1
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Ganesan V, Priya MH. Probing the Conformational Preference to β-Strand during Peptide Self-Assembly. J Phys Chem B 2023. [PMID: 37364023 DOI: 10.1021/acs.jpcb.3c02327] [Citation(s) in RCA: 0] [Impact Index Per Article: 0] [Reference Citation Analysis] [Abstract] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Indexed: 06/28/2023]
Abstract
Alanine-rich tetrapeptides like A3K dominantly exist as polyproline II helices in dilute aqueous solutions. However, during self-assembly, based on the free energy calculation in implicit solvent for various peptide conformations, only the peptides in the β-strand conformation can be packed closely. This necessitates the conformational transition to the β-strand commonly observed during peptide self-assembly such as in amyloid fibril formation. In fact, the closest interpeptide distance of 4.8 Å is consistent with the interstrand distance determined from the X-ray diffraction pattern of many amyloid fibrils. The position of free energy minimum obtained from implicit solvent calculation matches exactly with the explicit solvent simulation through umbrella sampling when the peptide conformations are restrained, demonstrating the applicability of the former for rapid screening of peptide configurations favorable for self-assembly. The barrier in the free energy profile in the presence of water arises out of the entropic restriction on the interstitial water molecules while satisfying the hydrogen bonding of both the peptides by forming water mediated hydrogen bond bridge. Further, the high energy barrier observed for the β-strand suggests that peptides initially tend to self-assemble in the polyproline II structure to mitigate the desolvation energy cost; the transition to the β-strand would happen only in the later stage after crossing the barrier. The umbrella sampling simulations with peptides allowed to change conformations, relative to each other, confirm the dynamic conformational transition during the course of the self-assembly supporting the "dock and lock" mechanism suggested for amyloid fibrillar growth.
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Affiliation(s)
- Vidhya Ganesan
- Department of Biotechnology, Bhupat and Jyoti Mehta School of Biosciences, Indian Institute of Technology Madras, Chennai 600 036, India
| | - M Hamsa Priya
- Department of Biotechnology, Bhupat and Jyoti Mehta School of Biosciences, Indian Institute of Technology Madras, Chennai 600 036, India
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2
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X de Andrade D, Colherinhas G. Polar Zipper on a Peptide Nanomembrane: A Characterization by Potential of Mean Force. J Phys Chem B 2023; 127:228-235. [PMID: 36548131 DOI: 10.1021/acs.jpcb.2c07135] [Citation(s) in RCA: 0] [Impact Index Per Article: 0] [Reference Citation Analysis] [Abstract] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Indexed: 12/24/2022]
Abstract
In this work, nanomembranes formed by the I3XGK (X = Q, S, or N) polar peptides are studied to characterize the average force and energy required to separate two neighboring β-sheets laterally joined by polar zippers. The results presented are obtained using a methodology (state of the art) involving the pulling umbrella method to generate the samples (umbrella sampling) and the potential of mean force (PMF) to evaluate the energetic variation evolved in the process of separating the polar zipper. It was observed that the maximum force required to separate the regions linked by polar zippers is 1.48 kJ/mol nm for the I3NGK nanomembrane and 1.22 kJ/mol nm [1.30 kJ/mol nm] for the I3QGK [I3SGK] nanomembranes, emphasizing that polar zippers play an important role in the interaction that interconnects β-sheets in broad and robust two-dimensional structures (tapes and membranes), offering an agile route to the construction of distinct nanomaterials from β-sheets. Also, negative values were obtained for energy as a function of the reaction coordinate for the regions where the formation of polar zippers occurs, showing that the lateral union of neighboring β-sheets is energetically favorable, with a value up to -3.0 kJ/mol, in the case of I3NGK nanomembranes.
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Affiliation(s)
- Douglas X de Andrade
- Instituto Federal de Educação, Ciência e Tecnologia de Goiás, Aparecida de Goiânia, GO74968-755, Brazil
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3
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Yang Z, He S, Wu H, Yin T, Wang L, Shan A. Nanostructured Antimicrobial Peptides: Crucial Steps of Overcoming the Bottleneck for Clinics. Front Microbiol 2021; 12:710199. [PMID: 34475862 PMCID: PMC8406695 DOI: 10.3389/fmicb.2021.710199] [Citation(s) in RCA: 16] [Impact Index Per Article: 5.3] [Reference Citation Analysis] [Abstract] [Key Words] [Track Full Text] [Download PDF] [Figures] [Journal Information] [Subscribe] [Scholar Register] [Received: 05/17/2021] [Accepted: 07/13/2021] [Indexed: 12/12/2022] Open
Abstract
The security issue of human health is faced with dispiriting threats from multidrug-resistant bacteria infections induced by the abuse and misuse of antibiotics. Over decades, the antimicrobial peptides (AMPs) hold great promise as a viable alternative to treatment with antibiotics due to their peculiar antimicrobial mechanisms of action, broad-spectrum antimicrobial activity, lower drug residue, and ease of synthesis and modification. However, they universally express a series of disadvantages that hinder their potential application in the biomedical field (e.g., low bioavailability, poor protease resistance, and high cytotoxicity) and extremely waste the abundant resources of AMP database discovered over the decades. For all these reasons, the nanostructured antimicrobial peptides (Ns-AMPs), based on a variety of nanosystem modification, have made up for the deficiencies and pushed the development of novel AMP-based antimicrobial therapies. In this review, we provide an overview of the advantages of Ns-AMPs in improving therapeutic efficacy and biological stability, reducing side effects, and gaining the effect of organic targeting and drug controlled release. Then the different material categories of Ns-AMPs are described, including inorganic material nanosystems containing AMPs, organic material nanosystems containing AMPs, and self-assembled AMPs. Additionally, this review focuses on the Ns-AMPs for the effect of biological activities, with emphasis on antimicrobial activity, biosecurity, and biological stability. The "state-of-the-art" antimicrobial modes of Ns-AMPs, including controlled release of AMPs under a specific environment or intrinsic antimicrobial properties of Ns-AMPs, are also explicated. Finally, the perspectives and conclusions of the current research in this field are also summarized.
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Affiliation(s)
| | | | | | | | | | - Anshan Shan
- Institute of Animal Nutrition, Northeast Agricultural University, Harbin, China
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4
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Alves ED, de Andrade DX, de Almeida AR, Colherinhas G. Atomistic molecular dynamics study on the influence of high temperatures on the structure of peptide nanomembranes candidates for organic supercapacitor electrode. J Mol Liq 2021. [DOI: 10.1016/j.molliq.2021.116126] [Citation(s) in RCA: 8] [Impact Index Per Article: 2.7] [Reference Citation Analysis] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Indexed: 10/21/2022]
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5
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Andrade D, Colherinhas G. The influence of polar and non-polar interactions on the self-assembly of peptide nanomembranes and their applications: An atomistic study using classical molecular dynamics. J Mol Liq 2020. [DOI: 10.1016/j.molliq.2020.114263] [Citation(s) in RCA: 11] [Impact Index Per Article: 2.8] [Reference Citation Analysis] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Indexed: 11/28/2022]
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6
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Abdrabo WS, Elgendy B, Soliman KA, Abd El-Lateef HM, Tantawy AH. Synthesis, assessment and corrosion protection investigations of some novel peptidomimetic cationic surfactants: Empirical and theoretical insights. J Mol Liq 2020. [DOI: 10.1016/j.molliq.2020.113672] [Citation(s) in RCA: 22] [Impact Index Per Article: 5.5] [Reference Citation Analysis] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Indexed: 12/20/2022]
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7
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Edwards-Gayle CC, Castelletto V, Hamley IW, Barrett G, Greco F, Hermida-Merino D, Rambo RP, Seitsonen J, Ruokolainen J. Self-Assembly, Antimicrobial Activity, and Membrane Interactions of Arginine-Capped Peptide Bola-Amphiphiles. ACS APPLIED BIO MATERIALS 2019; 2:2208-2218. [PMID: 31157325 PMCID: PMC6537463 DOI: 10.1021/acsabm.9b00172] [Citation(s) in RCA: 20] [Impact Index Per Article: 4.0] [Reference Citation Analysis] [Abstract] [Key Words] [Track Full Text] [Download PDF] [Figures] [Journal Information] [Subscribe] [Scholar Register] [Received: 03/04/2019] [Accepted: 04/16/2019] [Indexed: 12/27/2022]
Abstract
The self-assembly and antimicrobial activity of two novel arginine-capped bola-amphiphile peptides, namely RA6R and RA9R (R, arginine; A, alanine) are investigated. RA6R does not self-assemble in water due to its high solubility, but RA9R self-assembles above a critical aggregation concentration into ordered nanofibers due to the high hydrophobicity of the A9block. The structure of the RA9R nanofibers is studied by cryogenic transmission electron microscopy (cryo-TEM) and small-angle X-ray scattering (SAXS). Circular dichroism spectroscopy shows that both RA6R and RA9R adopt coil conformations in water at low concentration, but only RA9R adopts a β-sheet conformation at high concentration. SAXS and differential scanning calorimetry are used to study RA6R and RA9R interactions with a mixed lipid membrane that models a bacterial cell wall, consisting of multilamellar 1,2-dipalmitoyl-sn-glycero-3-phosphoglycerol/1,2-dipalmitoyl-sn-glycero-3-phosphoethanolamine vesicles. Cytotoxicity studies show that RA6R is more cytocompatible than RA9R. RA6R has enhanced activity against the Gram-negative pathogen P. aeruginosa at a concentration where viability of mammalian cells is retained. RA9R has little antimicrobial activity, independently of concentration. Our results highlight the influence of the interplay between relative charge and hydrophobicity on the self-assembly, cytocompatibility, and bioactivity of peptide bola-amphiphiles.
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Affiliation(s)
- Charlotte
J. C. Edwards-Gayle
- School
of Chemistry, Food Biosciences and Pharmacy, University of Reading, Whiteknights, Reading RG6 6AD, U.K.
- Diamond
Light Source, Harwell Science and Innovation
Campus, Didcot, Oxfordshire OX11 0DE, U.K.
| | - Valeria Castelletto
- School
of Chemistry, Food Biosciences and Pharmacy, University of Reading, Whiteknights, Reading RG6 6AD, U.K.
| | - Ian W. Hamley
- School
of Chemistry, Food Biosciences and Pharmacy, University of Reading, Whiteknights, Reading RG6 6AD, U.K.
| | - Glyn Barrett
- School
of Biological Sciences, University of Reading, Reading RG6 6UR, U.K.
| | - Francesca Greco
- School
of Chemistry, Food Biosciences and Pharmacy, University of Reading, Whiteknights, Reading RG6 6AD, U.K.
| | | | - Robert P. Rambo
- Diamond
Light Source, Harwell Science and Innovation
Campus, Didcot, Oxfordshire OX11 0DE, U.K.
| | - Jani Seitsonen
- Department
of Applied Physics, Aalto School of Science, P.O. Box 15100, FI-00076 Aalto, Finland
| | - Janne Ruokolainen
- Department
of Applied Physics, Aalto School of Science, P.O. Box 15100, FI-00076 Aalto, Finland
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8
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Castelletto V, Edwards-Gayle CJC, Hamley IW, Barrett G, Seitsonen J, Ruokolainen J. Peptide-Stabilized Emulsions and Gels from an Arginine-Rich Surfactant-like Peptide with Antimicrobial Activity. ACS APPLIED MATERIALS & INTERFACES 2019; 11:9893-9903. [PMID: 30785266 PMCID: PMC7005944 DOI: 10.1021/acsami.9b00581] [Citation(s) in RCA: 28] [Impact Index Per Article: 5.6] [Reference Citation Analysis] [Abstract] [Key Words] [MESH Headings] [Track Full Text] [Subscribe] [Scholar Register] [Received: 01/10/2019] [Accepted: 02/20/2019] [Indexed: 05/05/2023]
Abstract
The preparation of hydrogels and stable emulsions is important in the formulation of many functional nanostructured soft materials. We investigate the multifunctional self-assembly and bioactivity properties of a novel surfactant-like peptide (SLP) that shows antimicrobial activity, is able to form hydrogels without pH adjustment, and is able to stabilize oil-in-water emulsions. Furthermore, we demonstrate on-demand de-emulsification in response to the protease enzyme elastase. We show that SLP (Ala)9-Arg (A9R) forms β-sheet fibers above a critical aggregation concentration and that water-in-oil emulsions are stabilized by a coating of β-sheet fibers around the emulsion droplets. Furthermore, we demonstrate enzyme-responsive de-emulsification, which has potential in the development of responsive release systems. The peptide shows selective antimicrobial activity against Gram-negative pathogens including Pseudomonas aeruginosa, which causes serious infections. Our results highlight the utility of SLPs in the stabilization of oil/water emulsions and the potential for these to be used to formulate antimicrobial peptide emulsions which are additionally responsive to protease. The peptide A9R has pronounced antibacterial activity against clinically challenging pathogens, and its ability to form β-sheet fibers plays a key role in its diverse structural properties, ranging from hydrogel formation to emulsion stabilization.
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Affiliation(s)
- Valeria Castelletto
- Department of Chemistry and School of Biological
Sciences, University of Reading, Reading RG6 6AD, United Kingdom
| | | | - Ian W. Hamley
- Department of Chemistry and School of Biological
Sciences, University of Reading, Reading RG6 6AD, United Kingdom
| | - Glyn Barrett
- Department of Chemistry and School of Biological
Sciences, University of Reading, Reading RG6 6AD, United Kingdom
| | - Jani Seitsonen
- Nanomicroscopy Center, Aalto University, Puumiehenkuja
2, FIN-02150 Espoo, Finland
| | - Janne Ruokolainen
- Nanomicroscopy Center, Aalto University, Puumiehenkuja
2, FIN-02150 Espoo, Finland
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9
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Qin J, Luo T, Kiick KL. Self-Assembly of Stable Nanoscale Platelets from Designed Elastin-like Peptide–Collagen-like Peptide Bioconjugates. Biomacromolecules 2019; 20:1514-1521. [DOI: 10.1021/acs.biomac.8b01681] [Citation(s) in RCA: 20] [Impact Index Per Article: 4.0] [Reference Citation Analysis] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Indexed: 02/04/2023]
Affiliation(s)
- Jingya Qin
- Department of Materials Science and Engineering, University of Delaware, Newark, Delaware 19716, United States
| | - Tianzhi Luo
- Department of Materials Science and Engineering, University of Delaware, Newark, Delaware 19716, United States
| | - Kristi L. Kiick
- Department of Materials Science and Engineering, University of Delaware, Newark, Delaware 19716, United States
- Delaware Biotechnology
Institute, Newark, Delaware 19711, United States
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10
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Castelletto V, Barnes RH, Karatzas KA, Edwards-Gayle CJC, Greco F, Hamley IW, Seitsonen J, Ruokolainen J. Restructuring of Lipid Membranes by an Arginine-Capped Peptide Bolaamphiphile. LANGMUIR : THE ACS JOURNAL OF SURFACES AND COLLOIDS 2019; 35:1302-1311. [PMID: 30056711 DOI: 10.1021/acs.langmuir.8b01014] [Citation(s) in RCA: 15] [Impact Index Per Article: 3.0] [Reference Citation Analysis] [Abstract] [MESH Headings] [Track Full Text] [Subscribe] [Scholar Register] [Indexed: 05/22/2023]
Abstract
We study the self-assembly of arginine-capped bolaamphiphile peptide RA3R (A: alanine, R: arginine) together with its binding to model membranes and its cytotoxicity and antimicrobial activity. Anionic 2-oleoyl-1-palmitoyl- sn-glycero-3-phospho-rac-(1-glycerol) sodium salt/2-oleoyl-1-palmitoyl- sn-glycero-3-phosphoethanolamine (POPG/POPE) vesicles and zwitterionic 1,2-dioleoyl- sn-glycero-3-phosphocholine/2-oleoyl-1-palmitoyl- sn-glycero-3-phosphocholine (POPC/DOPC) vesicles are used as model membranes to mimic bacterial and mammalian cell membranes, respectively. We show that RA3R adopts a polyproline-II collagen-like conformation in water. Binding of RA3R to POPG/POPE vesicles induces a strong correlation between the lipid bilayers, driven by RA3R/POPG attractive electrostatic interaction together with a shift of the intramolecular POPE zwitterionic interaction toward an attractive electrostatic interaction with the RA3R. Populations of RA3R/POPG/POPE vesicles comprise different bilayer spacings, dA and dB, controlled by the conformation of the lipid chains corresponding to the Lβ (gel-like) and Lα (liquid-crystal) phases, respectively. Cryo-TEM images reveal the presence of vesicles with no internal structure, compartmentalized thin-wall vesicles, or multilayer vesicles with uncorrelated layers and compartmentalization depending on the RA3R/POPG/POPE composition. In contrast, the interaction of RA3R with multilamellar POPC/DOPC vesicles leads to the decorrelation of the lipid bilayers. RA3R was tolerated by skin fibroblast cells for a concentration up to 0.01 wt %, while 0.25 wt % RA3R proved to be an efficient antibacterial agent against Gram-positive bacteria L. monocytogenes. Our results highlight the ability of RA3R to distinguish between bacterial and mammalian cells and establish this peptide as a candidate to reduce the proliferation of L. monocytogenes bacteria.
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Affiliation(s)
- Valeria Castelletto
- School of Chemistry, Food Biosciences and Pharmacy , University of Reading , Whiteknights , Reading RG6 6AD , United Kingdom
| | - Ruth H Barnes
- School of Chemistry, Food Biosciences and Pharmacy , University of Reading , Whiteknights , Reading RG6 6AD , United Kingdom
| | - Kimon-Andreas Karatzas
- School of Chemistry, Food Biosciences and Pharmacy , University of Reading , Whiteknights , Reading RG6 6AD , United Kingdom
| | - Charlotte J C Edwards-Gayle
- School of Chemistry, Food Biosciences and Pharmacy , University of Reading , Whiteknights , Reading RG6 6AD , United Kingdom
| | - Francesca Greco
- School of Chemistry, Food Biosciences and Pharmacy , University of Reading , Whiteknights , Reading RG6 6AD , United Kingdom
| | - Ian W Hamley
- School of Chemistry, Food Biosciences and Pharmacy , University of Reading , Whiteknights , Reading RG6 6AD , United Kingdom
| | - Jani Seitsonen
- Department of Applied Physics , Aalto School of Science , P.O. Box 15100, FI-00076 Aalto , Finland
| | - Janne Ruokolainen
- Department of Applied Physics , Aalto School of Science , P.O. Box 15100, FI-00076 Aalto , Finland
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11
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Wang L, Zeng C, Xu H, Yin P, Chen D, Deng J, Li M, Zheng N, Gu C, Ma Y. A highly soluble, crystalline covalent organic framework compatible with device implementation. Chem Sci 2019; 10:1023-1028. [PMID: 30774897 PMCID: PMC6346726 DOI: 10.1039/c8sc04255a] [Citation(s) in RCA: 109] [Impact Index Per Article: 21.8] [Reference Citation Analysis] [Abstract] [Track Full Text] [Download PDF] [Figures] [Journal Information] [Subscribe] [Scholar Register] [Received: 09/25/2018] [Accepted: 10/22/2018] [Indexed: 12/23/2022] Open
Abstract
Covalent organic frameworks (COFs) have emerged as a tailor-made platform for designing next-generation two-dimensional materials. However, COFs are produced as insoluble and unprocessable solids, which precludes the preparation of thin films for optoelectronic applications. Here, we report designed synthesis of a highly soluble yet crystalline COF material through the regulation of its inter-layer interactions. The resulting COF is remarkably soluble in a variety of organic solvents and forms stable true solutions with retention of its layered structure. These unique features endow the COF with solution processability; high-quality, large-area COF films can be produced on various substrates in a high-throughput and efficient manner, with good control over the film thickness, making this material compatible with a variety of device applications. The films are electrically anisotropic; the intra-layer carrier conduction is inhibited, while the inter-layer carrier migration is outstanding, showing the highest conductivity among all reported COF materials. Our highly soluble and processable COF may open new pathways for realising high-performance COF-based optoelectronic devices with diverse functions.
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Affiliation(s)
- Lingling Wang
- State Key Laboratory of Luminescent Materials and Devices , Institute of Polymer Optoelectronic Materials and Devices , South China University of Technology , Guangzhou 510640 , P. R. China . ;
| | - Cheng Zeng
- State Key Laboratory of Luminescent Materials and Devices , Institute of Polymer Optoelectronic Materials and Devices , South China University of Technology , Guangzhou 510640 , P. R. China . ;
| | - Hong Xu
- Institute of Nuclear and New Energy Technology , Tsinghua University , Beijing 100084 , P. R. China
| | - Panchao Yin
- State Key Laboratory of Luminescent Materials and Devices , Institute of Polymer Optoelectronic Materials and Devices , South China University of Technology , Guangzhou 510640 , P. R. China . ;
- South China Advanced Institute for Soft Matter Science and Technology , South China University of Technology , Guangzhou 510640 , P. R. China
| | - Dongcheng Chen
- State Key Laboratory of Luminescent Materials and Devices , Institute of Polymer Optoelectronic Materials and Devices , South China University of Technology , Guangzhou 510640 , P. R. China . ;
| | - Jian Deng
- State Key Laboratory of Luminescent Materials and Devices , Institute of Polymer Optoelectronic Materials and Devices , South China University of Technology , Guangzhou 510640 , P. R. China . ;
| | - Mu Li
- State Key Laboratory of Luminescent Materials and Devices , Institute of Polymer Optoelectronic Materials and Devices , South China University of Technology , Guangzhou 510640 , P. R. China . ;
- South China Advanced Institute for Soft Matter Science and Technology , South China University of Technology , Guangzhou 510640 , P. R. China
| | - Nan Zheng
- State Key Laboratory of Luminescent Materials and Devices , Institute of Polymer Optoelectronic Materials and Devices , South China University of Technology , Guangzhou 510640 , P. R. China . ;
| | - Cheng Gu
- State Key Laboratory of Luminescent Materials and Devices , Institute of Polymer Optoelectronic Materials and Devices , South China University of Technology , Guangzhou 510640 , P. R. China . ;
| | - Yuguang Ma
- State Key Laboratory of Luminescent Materials and Devices , Institute of Polymer Optoelectronic Materials and Devices , South China University of Technology , Guangzhou 510640 , P. R. China . ;
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12
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Hutchinson JA, Burholt S, Hamley IW, Lundback AK, Uddin S, Gomes dos Santos A, Reza M, Seitsonen J, Ruokolainen J. The Effect of Lipidation on the Self-Assembly of the Gut-Derived Peptide Hormone PYY3–36. Bioconjug Chem 2018; 29:2296-2308. [DOI: 10.1021/acs.bioconjchem.8b00286] [Citation(s) in RCA: 23] [Impact Index Per Article: 3.8] [Reference Citation Analysis] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Indexed: 11/28/2022]
Affiliation(s)
- Jessica A. Hutchinson
- Department of Chemistry, University of Reading, Whiteknights, Reading RG6 6AD, United Kingdom
| | - Samuel Burholt
- Department of Chemistry, University of Reading, Whiteknights, Reading RG6 6AD, United Kingdom
| | - Ian W. Hamley
- Department of Chemistry, University of Reading, Whiteknights, Reading RG6 6AD, United Kingdom
| | | | - Shahid Uddin
- Medimmune, Granta Park, Cambridge CB21 6GH, United Kingdom
| | | | - Mehedi Reza
- Department of Applied Physics, Aalto University, P.O.
Box 15100, FI-00076 Aalto, Finland
| | - Jani Seitsonen
- Department of Applied Physics, Aalto University, P.O.
Box 15100, FI-00076 Aalto, Finland
| | - Janne Ruokolainen
- Department of Applied Physics, Aalto University, P.O.
Box 15100, FI-00076 Aalto, Finland
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13
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Castelletto V, Barnes RH, Karatzas KA, Edwards-Gayle CJC, Greco F, Hamley IW, Rambo R, Seitsonen J, Ruokolainen J. Arginine-Containing Surfactant-Like Peptides: Interaction with Lipid Membranes and Antimicrobial Activity. Biomacromolecules 2018; 19:2782-2794. [PMID: 29738229 DOI: 10.1021/acs.biomac.8b00391] [Citation(s) in RCA: 40] [Impact Index Per Article: 6.7] [Reference Citation Analysis] [Abstract] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Indexed: 01/05/2023]
Abstract
The activity of antimicrobial peptides stems from their interaction with bacterial membranes, which are disrupted according to a number of proposed mechanisms. Here, we investigate the interaction of a model antimicrobial peptide that contains a single arginine residue with vesicles containing model lipid membranes. The surfactant-like peptide Ala6-Arg (A6R) is studied in the form where both termini are capped (CONH-A6R-NH2, capA6R) or uncapped (NH2-A6R-OH, A6R). Lipid membranes are selected to correspond to model anionic membranes (POPE/POPG) resembling those in bacteria or model zwitterionic membranes (POPC/DOPC) similar to those found in mammalian cells. Viable antimicrobial agents should show activity against anionic membranes but not zwitterionic membranes. We find, using small-angle X-ray scattering (SAXS) and cryogenic-TEM (transmission electron microscopy) that, uniquely, capA6R causes structuring of anionic membranes due to the incorporation of the peptide in the lipid bilayer with peptide β-sheet conformation revealed by circular dichroism spectroscopy (CD). There is a preferential interaction of the peptide with POPG (which is the only anionic lipid in the systems studied) due to electrostatic interactions and bidentate hydrogen bonding between arginine guanidinium and lipid phosphate groups. At a certain composition, this peptide leads to the remarkable tubulation of zwitterionic phosphatidylcholine (PC) vesicles, which is ascribed to the interaction of the peptide with the outer lipid membrane, which occurs without penetration into the membrane. In contrast, peptide A6R has a minimal influence on the anionic lipid membranes (and no β-sheet peptide structure is observed) but causes thinning (lamellar decorrelation) of zwitterionic membranes. We also investigated the cytotoxicity (to fibroblasts) and antimicrobial activity of these two peptides against model Gram positive and Gram negative bacteria. A strong selective antimicrobial activity against Gram positive Listeria monocytogenes, which is an important food-borne pathogen, is observed for capA6R. Peptide A6R is active against all three studied bacteria. The activity of the peptides against bacteria and mammalian cells is related to the specific interactions uncovered through our SAXS, cryo-TEM, and CD measurements. Our results highlight the exquisite sensitivity to the charge distribution in these designed peptides and its effect on the interaction with lipid membranes bearing different charges, and ultimately on antimicrobial activity.
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Affiliation(s)
- Valeria Castelletto
- School of Chemistry, Food Biosciences and Pharmacy , University of Reading , Whiteknights , Reading RG6 6AD , United Kingdom
| | - Ruth H Barnes
- School of Chemistry, Food Biosciences and Pharmacy , University of Reading , Whiteknights , Reading RG6 6AD , United Kingdom
| | - Kimon-Andreas Karatzas
- School of Chemistry, Food Biosciences and Pharmacy , University of Reading , Whiteknights , Reading RG6 6AD , United Kingdom
| | - Charlotte J C Edwards-Gayle
- School of Chemistry, Food Biosciences and Pharmacy , University of Reading , Whiteknights , Reading RG6 6AD , United Kingdom
| | - Francesca Greco
- School of Chemistry, Food Biosciences and Pharmacy , University of Reading , Whiteknights , Reading RG6 6AD , United Kingdom
| | - Ian W Hamley
- School of Chemistry, Food Biosciences and Pharmacy , University of Reading , Whiteknights , Reading RG6 6AD , United Kingdom
| | - Robert Rambo
- Diamond Light Source , Harwell Science and Innovation Campus , Didcot, Oxfordshire OX11 0DE , United Kingdom
| | - Jani Seitsonen
- Department of Applied Physics , Aalto School of Science , P.O. Box 15100, FI-00076 Aalto , Finland
| | - Janne Ruokolainen
- Department of Applied Physics , Aalto School of Science , P.O. Box 15100, FI-00076 Aalto , Finland
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14
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Mushnoori S, Schmidt K, Nanda V, Dutt M. Designing phenylalanine-based hybrid biological materials: controlling morphology via molecular composition. Org Biomol Chem 2018; 16:2499-2507. [PMID: 29565077 DOI: 10.1039/c8ob00130h] [Citation(s) in RCA: 7] [Impact Index Per Article: 1.2] [Reference Citation Analysis] [Abstract] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Indexed: 11/21/2022]
Abstract
Harnessing the self-assembly of peptide sequences has demonstrated great promise in the domain of creating high precision shape-tunable biomaterials. The unique properties of peptides allow for a building block approach to material design. In this study, self-assembly of mixed systems encompassing two peptide sequences with identical hydrophobic regions and distinct polar segments is investigated. The two peptide sequences are diphenylalanine and phenylalanine-asparagine-phenylalanine. The study examines the impact of molecular composition (namely, the total peptide concentration and the relative tripeptide concentration) on the morphology of the self-assembled hybrid biological material. We report a rich polymorphism in the assemblies of these peptides and explain the relationship between the peptide sequence, concentration and the morphology of the supramolecular assembly.
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Affiliation(s)
- Srinivas Mushnoori
- Department of Chemical and Biochemical Engineering, Robert Wood Johnson Medical School, Rutgers The State University of New Jersey, Piscataway, New Jersey, USA.
| | - Kassandra Schmidt
- Department of Biomedical Engineering, Robert Wood Johnson Medical School, Rutgers The State University of New Jersey, Piscataway, New Jersey, USA
| | - Vikas Nanda
- Center for Advanced Biotechnology and Medicine, Robert Wood Johnson Medical School, Rutgers The State University of New Jersey, Piscataway, New Jersey, USA and Department of Biochemistry and Molecular Biology, Robert Wood Johnson Medical School, Rutgers The State University of New Jersey, Piscataway, New Jersey, USA
| | - Meenakshi Dutt
- Department of Chemical and Biochemical Engineering, Robert Wood Johnson Medical School, Rutgers The State University of New Jersey, Piscataway, New Jersey, USA.
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Cao M, Lu S, Zhao W, Deng L, Wang M, Wang J, Zhou P, Wang D, Xu H, Lu JR. Peptide Self-Assembled Nanostructures with Distinct Morphologies and Properties Fabricated by Molecular Design. ACS APPLIED MATERIALS & INTERFACES 2017; 9:39174-39184. [PMID: 29067798 DOI: 10.1021/acsami.7b11681] [Citation(s) in RCA: 24] [Impact Index Per Article: 3.4] [Reference Citation Analysis] [Abstract] [Key Words] [Track Full Text] [Subscribe] [Scholar Register] [Indexed: 05/27/2023]
Abstract
Six surfactant-like peptides with the same amino acid composition but different primary sequences are designed, including G3A3V3I3K3, K3I3V3A3G3, I3V3A3G3K3, K3G3A3V3I3, V3G3I3A3K3, and K3A3I3G3V3. These peptides form antiparallel β-sheets during self-assembly. Because the constituent residues have different side chain size and hydrophobicity, sequence changes adjust group distribution and hydrophobicity on the two sides of a given β-sheet. This consequently tunes the binding energy of the side-to-side pairing conformations and leads to different self-assembled structures. G3A3V3I3K3 and K3I3V3A3G3 form short nanorods with diameters of 8.5 ± 1.0 nm and lengths <150 nm. I3V3A3G3K3 and K3G3A3V3I3 form nanosheets with heights of 4.0 ± 0.5 nm and limited lengths and widths. V3G3I3A3K3 and K3A3I3G3V3 form long fibrils with diameters of 7.0 ± 1.0 nm and lengths of micrometer scale. These nanostructures exhibit different capacity in encapsulating insoluble hydrophobic drug molecules and delivering them into the cells. The nanosheets of I3V3A3G3K3 and K3G3A3V3I3 can encapsulate both nile red and doxorubicin molecules to an extent of up to 17-23% in mole ratio. Moreover, the shape and size of the nanostructures affect the drug delivery into cells greatly, with the nanosheets and short rods exhibiting higher efficiency than the long fibrils. The study provides new insights into programmed peptide self-assembly toward specific functionalities.
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Affiliation(s)
- Meiwen Cao
- State Key Laboratory of Heavy Oil Processing and Centre for Bioengineering and Biotechnology, China University of Petroleum (East China) , 66 Changjiang West Road, Qingdao 266580, China
| | - Sha Lu
- State Key Laboratory of Heavy Oil Processing and Centre for Bioengineering and Biotechnology, China University of Petroleum (East China) , 66 Changjiang West Road, Qingdao 266580, China
| | - Wenjing Zhao
- State Key Laboratory of Heavy Oil Processing and Centre for Bioengineering and Biotechnology, China University of Petroleum (East China) , 66 Changjiang West Road, Qingdao 266580, China
| | - Li Deng
- State Key Laboratory of Heavy Oil Processing and Centre for Bioengineering and Biotechnology, China University of Petroleum (East China) , 66 Changjiang West Road, Qingdao 266580, China
| | - Meng Wang
- State Key Laboratory of Heavy Oil Processing and Centre for Bioengineering and Biotechnology, China University of Petroleum (East China) , 66 Changjiang West Road, Qingdao 266580, China
| | - Jiqian Wang
- State Key Laboratory of Heavy Oil Processing and Centre for Bioengineering and Biotechnology, China University of Petroleum (East China) , 66 Changjiang West Road, Qingdao 266580, China
| | - Peng Zhou
- State Key Laboratory of Heavy Oil Processing and Centre for Bioengineering and Biotechnology, China University of Petroleum (East China) , 66 Changjiang West Road, Qingdao 266580, China
| | - Dong Wang
- State Key Laboratory of Heavy Oil Processing and Centre for Bioengineering and Biotechnology, China University of Petroleum (East China) , 66 Changjiang West Road, Qingdao 266580, China
| | - Hai Xu
- State Key Laboratory of Heavy Oil Processing and Centre for Bioengineering and Biotechnology, China University of Petroleum (East China) , 66 Changjiang West Road, Qingdao 266580, China
| | - Jian R Lu
- Biological Physics Laboratory, School of Physics and Astronomy, University of Manchester , Schuster Building, Oxford Road, Manchester M13 9PL, U.K
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Das Mahapatra R, Dey J, Weiss RG. l-Carnosine-Derived Fmoc-Tripeptides Forming pH-Sensitive and Proteolytically Stable Supramolecular Hydrogels. LANGMUIR : THE ACS JOURNAL OF SURFACES AND COLLOIDS 2017; 33:12989-12999. [PMID: 29064707 DOI: 10.1021/acs.langmuir.7b03018] [Citation(s) in RCA: 10] [Impact Index Per Article: 1.4] [Reference Citation Analysis] [Abstract] [Track Full Text] [Subscribe] [Scholar Register] [Indexed: 05/24/2023]
Abstract
A series of β-amino acid containing tripeptides has been designed and synthesized in order to develop oligopeptide-based, thermoreversible, pH-sensitive, and proteolytically stable hydrogels. The Fmoc [N-(fluorenyl-9-methoxycarbonyl)]-protected tripeptides were found to produce hydrogels in both pH 7 and 2 buffers at a very low concentration (<0.2% w/v). It has been shown that the Fmoc group plays an important role in the gelation process. Also a dependence of gelation ability on hydrophobicity of the side chain of the Fmoc-protected α-amino acid was observed. The effect of the addition of inorganic salts on the gelation process was investigated as well. Spectroscopic studies indicated formation of J-aggregates through π-π stacking interactions between Fmoc groups in solution as well as in the gel state. In the gel phase, these self-assembling tripeptides form long interconnected nanofibrils leading to the formation of 3-dimensional network structure. The hydrogels were characterized by various techniques, including field emission electron microscopy, transmission electron microscopy, atomic force microscopy, rheology, Fourier transform IR, circular dichroism (CD), and wide-angle X-ray diffraction (WAXD) spectroscopy. The CD studies and WAXD analyses show an antiparallel β-sheet structure in the gel state. l-Phenylalanine and l-tyrosine containing tripeptides formed helical aggregates with handedness opposite to those containing l-valine and l-leucine residues. The mechanical stability of the hydrogels was found to depend on the hydrophobicity of the side chain of the tripeptide as well as on the pH of the solution. Also, the tripeptides exhibit in vitro proteolytic stability against proteinase K enzyme.
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Affiliation(s)
- Rita Das Mahapatra
- Department of Chemistry, Indian Institute of Technology Kharagpur , Kharagpur 721 302, India
| | - Joykrishna Dey
- Department of Chemistry, Indian Institute of Technology Kharagpur , Kharagpur 721 302, India
| | - Richard G Weiss
- Department of Chemistry and Institute for Soft Matter Synthesis and Metrology, Georgetown University , Washington, D.C. 20057-1227, United States
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Basu K, Nandi N, Mondal B, Dehsorkhi A, Hamley IW, Banerjee A. Peptide-based ambidextrous bifunctional gelator: applications in oil spill recovery and removal of toxic organic dyes for waste water management. Interface Focus 2017; 7:20160128. [PMID: 29147552 DOI: 10.1098/rsfs.2016.0128] [Citation(s) in RCA: 29] [Impact Index Per Article: 4.1] [Reference Citation Analysis] [Abstract] [Key Words] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Indexed: 11/12/2022] Open
Abstract
A low molecular weight peptide-based ambidextrous gelator molecule has been discovered for efficient control of water pollution. The gelator molecules can gel various organic solvents with diverse polarity, e.g. n-hexane, n-octane, petroleum ether, petrol, diesel, aromatic solvents like chlorobenzene, toluene, benzene, o-xylene and even aqueous phosphate buffer of pH 7.5. These gels have been thoroughly characterized using various techniques including field emission scanning electron microscopy, Fourier transform infrared spectroscopy, X-ray powder diffraction analysis, small angle X-ray scattering and rheological experiments. Interestingly, hydrogel obtained from the gelator molecule has been found to absorb toxic organic dyes (both cationic and anionic dyes) from dye-contaminated water. The gelator molecule can be reused for several cycles, indicating its possible future use in waste water management. Moreover, this gelator can selectively gel petrol, diesel, pump oil from an oil-water mixture in the presence of a carrier solvent, ethyl acetate, suggesting its efficient application for oil spill recovery. These results indicate that the peptide-based ambidextrous gelator produces soft materials (gels) with dual function: (i) removal of toxic organic dyes in waste water treatment and (ii) oil spill recovery.
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Affiliation(s)
- Kingshuk Basu
- Department of Biological Chemistry, Indian Association for the Cultivation of Science, Jadavpur, Kolkata 700032, India
| | - Nibedita Nandi
- Department of Biological Chemistry, Indian Association for the Cultivation of Science, Jadavpur, Kolkata 700032, India
| | - Biplab Mondal
- Department of Biological Chemistry, Indian Association for the Cultivation of Science, Jadavpur, Kolkata 700032, India
| | - Ashkan Dehsorkhi
- Department of Chemistry, University of Reading, Whiteknights, Reading RG6 6AD, UK
| | - Ian W Hamley
- Department of Chemistry, University of Reading, Whiteknights, Reading RG6 6AD, UK
| | - Arindam Banerjee
- Department of Biological Chemistry, Indian Association for the Cultivation of Science, Jadavpur, Kolkata 700032, India
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