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Porat A, Tekinalp A, Bhosale Y, Gazzola M, Meroz Y. On the mechanical origins of waving, coiling and skewing in Arabidopsis thaliana roots. Proc Natl Acad Sci U S A 2024; 121:e2312761121. [PMID: 38446852 PMCID: PMC10945788 DOI: 10.1073/pnas.2312761121] [Citation(s) in RCA: 0] [Impact Index Per Article: 0] [Reference Citation Analysis] [Abstract] [Key Words] [MESH Headings] [Grants] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Received: 07/25/2023] [Accepted: 12/07/2023] [Indexed: 03/08/2024] Open
Abstract
By masterfully balancing directed growth and passive mechanics, plant roots are remarkably capable of navigating complex heterogeneous environments to find resources. Here, we present a theoretical and numerical framework which allows us to interrogate and simulate the mechanical impact of solid interfaces on the growth pattern of plant organs. We focus on the well-known waving, coiling, and skewing patterns exhibited by roots of Arabidopsis thaliana when grown on inclined surfaces, serving as a minimal model of the intricate interplay with solid substrates. By modeling growing slender organs as Cosserat rods that mechanically interact with the environment, our simulations verify hypotheses of waving and coiling arising from the combination of active gravitropism and passive root-plane responses. Skewing is instead related to intrinsic twist due to cell file rotation. Numerical investigations are outfitted with an analytical framework that consistently relates transitions between straight, waving, coiling, and skewing patterns with substrate tilt angle. Simulations are found to corroborate theory and recapitulate a host of reported experimental observations, thus providing a systematic approach for studying in silico plant organs behavior in relation to their environment.
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Affiliation(s)
- Amir Porat
- Department of Condensed Matter, School of Physics and Astronomy, Tel Aviv University, Tel Aviv69978, Israel
- Center for Physics, Chemistry of Living Systems, Tel-Aviv University, Tel Aviv69978, Israel
| | - Arman Tekinalp
- Mechanical Sciences and Engineering, University of Illinois at Urbana–Champaign, Urbana, IL61801
| | - Yashraj Bhosale
- Mechanical Sciences and Engineering, University of Illinois at Urbana–Champaign, Urbana, IL61801
| | - Mattia Gazzola
- Mechanical Sciences and Engineering, University of Illinois at Urbana–Champaign, Urbana, IL61801
| | - Yasmine Meroz
- Center for Physics, Chemistry of Living Systems, Tel-Aviv University, Tel Aviv69978, Israel
- Faculty of Life Sciences, School of Plant Sciences and Food Security, Tel Aviv University, Tel Aviv, Israel
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2
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Nonomura Y, Tsuchiya U, Taguchi M, Tsuchiya R, Goto T. Characterization of Powder Cosmetics Based on Friction Dynamics. J Oleo Sci 2022; 71:1459-1467. [PMID: 36089401 DOI: 10.5650/jos.ess22173] [Citation(s) in RCA: 0] [Impact Index Per Article: 0] [Reference Citation Analysis] [Abstract] [Key Words] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Indexed: 11/13/2022] Open
Abstract
Frictional properties are one of the most important physical factors in the design of powder cosmetics. In this study, 21 powder cosmetics were applied to artificial skin, and their friction characteristics were evaluated using a sinusoidal motion friction evaluation system. Three friction profiles were observed that depended on the sliding velocity. Principal component analysis showed that the principal component (Z), which characterized the friction dynamics of powder cosmetics, included the static friction coefficient (μ s), the kinetic friction coefficient (μ k), the delay time (δ), and the viscosity coefficient (C). Furthermore, a cluster analysis on Z suggested that powder cosmetics can be classified into three groups according to their friction dynamics. These results may be helpful to understand the phenomena that occur during the application of powder cosmetics.
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Affiliation(s)
- Yoshimune Nonomura
- Department of Applied Chemistry, Chemical Engineering, and Biochemical Engineering, Graduate School of Science and Engineering, Yamagata University
| | - Urara Tsuchiya
- Department of Applied Chemistry, Chemical Engineering, and Biochemical Engineering, Graduate School of Science and Engineering, Yamagata University
| | - Mayu Taguchi
- Department of Applied Chemistry, Chemical Engineering, and Biochemical Engineering, Graduate School of Science and Engineering, Yamagata University
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Nonomura Y, Tsuchiya U, Taguchi M, Tsuchiya R, Goto T. Characterization of Cosmetic Dispersions Based on Friction Dynamics. J Oleo Sci 2022; 71:1159-1168. [PMID: 35793976 DOI: 10.5650/jos.ess22083] [Citation(s) in RCA: 1] [Impact Index Per Article: 0.5] [Reference Citation Analysis] [Abstract] [Key Words] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Indexed: 11/13/2022] Open
Abstract
Frictional properties are one of the most important physical factors in the design of cosmetic dispersions in which solid particles are dispersed in a liquid. The effects of ingredients and formulations on frictional properties have been previously reported. In this study, the frictional properties of 33 cosmetic dispersions were evaluated using a sinusoidal motion friction evaluation system when applied on an artificial skin. A detailed analysis of the velocity dependence of the friction coefficient demonstrated that all cosmetic dispersions exhibited stabile pattern and the friction behavior did not change during the round trip. We analyzed friction-based parameters by principal component analysis and demonstrated that the principal components Z1 and Z2 include the static friction coefficient μs, kinetic friction coefficient μk, delay time δ, and viscosity coefficient C, and that these factors are involved in characterizing friction dynamics. The cluster analysis on Z1 and Z2 suggested that these dispersions can be classified in three groups with respect to friction dynamics. These results can help understand the characteristics of cosmetics and control their function and utility.
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Affiliation(s)
- Yoshimune Nonomura
- Department of Biochemical Engineering, Graduate School of Science and Engineering, Yamagata University
| | - Urara Tsuchiya
- Department of Biochemical Engineering, Graduate School of Science and Engineering, Yamagata University
| | - Mayu Taguchi
- Department of Biochemical Engineering, Graduate School of Science and Engineering, Yamagata University
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A mechano-sensing mechanism for waving in plant roots. Sci Rep 2022; 12:9635. [PMID: 35688922 PMCID: PMC9187721 DOI: 10.1038/s41598-022-14093-1] [Citation(s) in RCA: 0] [Impact Index Per Article: 0] [Reference Citation Analysis] [Abstract] [Track Full Text] [Download PDF] [Figures] [Journal Information] [Subscribe] [Scholar Register] [Received: 09/07/2021] [Accepted: 06/01/2022] [Indexed: 11/15/2022] Open
Abstract
Arabidopsis roots grown on inclined agar surfaces exhibit unusual sinusoidal patterns known as root-waving. The origin of these patterns has been ascribed to both genetic and environmental factors. Here we propose a mechano-sensing model for root-waving, based on a combination of friction induced by gravitropism, the elasticity of the root and the anchoring of the root to the agar by thin hairs, and demonstrate its relevance to previously obtained experimental results. We further test the applicability of this model by performing experiments in which we measure the effect of gradually changing the inclination angles of the agar surfaces on the wavelength and other properties of the growing roots. We find that the observed dynamics is different than the dynamics reported in previous works, but that it can still be explained using the same mechano-sensing considerations. This is supported by the fact that a scaling relation derived from the model describes the observed dependence of the wavelength on the tilt angle for a large range of angles. We also compare the prevalence of waving in different plant species and show that it depends on root thickness as predicted by the model. The results indicate that waving can be explained using mechanics and gravitropism alone and that mechanics may play a greater role in root growth and form than was previously considered.
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Kikuchi K, Iwasawa A, Omori M, Mayama H, Nonomura Y. Friction Dynamics of Foams under Nonlinear Motion. ACS OMEGA 2022; 7:16515-16523. [PMID: 35601302 PMCID: PMC9118422 DOI: 10.1021/acsomega.2c00677] [Citation(s) in RCA: 1] [Impact Index Per Article: 0.5] [Reference Citation Analysis] [Abstract] [Grants] [Track Full Text] [Download PDF] [Figures] [Subscribe] [Scholar Register] [Received: 02/02/2022] [Accepted: 04/21/2022] [Indexed: 06/15/2023]
Abstract
Foams are viscoelastic soft materials with complex mechanical properties. Here, we evaluated the friction dynamics of foams between acrylic plates using a sinusoidal motion friction evaluation system and we found some interesting characteristics under accelerated conditions. On a typical solid surface, a symmetrical friction profile, in which static and kinetic frictions are observed, is obtained under reciprocating nonlinear motion. Meanwhile, significant lubricant effects and velocity-dependent friction profiles without static friction were observed in foams. The friction force in foams increased in proportion to the power of velocity, with a power index of <1. These characteristic and dynamic phenomena in foams were observed in this study. They had been caused by the formation of a thick lubricant film and various dissipative modes including surfactant diffusion, viscous dissipation, and wall slip of bubbles. Moreover, the addition of a thickener increased the friction force and the delay time of friction response and improved the foam durability against normal force and shear. These findings are useful for understanding dynamic phenomena in soft materials.
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Affiliation(s)
- Kei Kikuchi
- Department
of Biochemical Engineering, Graduate School of Science and Engineering, Yamagata University, 4-3-16 Jonan, Yonezawa 992-8510, Japan
| | - Akari Iwasawa
- Department
of Biochemical Engineering, Graduate School of Science and Engineering, Yamagata University, 4-3-16 Jonan, Yonezawa 992-8510, Japan
| | - Mitsuki Omori
- Department
of Biochemical Engineering, Graduate School of Science and Engineering, Yamagata University, 4-3-16 Jonan, Yonezawa 992-8510, Japan
| | - Hiroyuki Mayama
- Department
of Chemistry, Asahikawa Medical University, 2-1-1-1 Midorigaoka-Higashi, Asahikawa 078-8510, Japan
| | - Yoshimune Nonomura
- Department
of Biochemical Engineering, Graduate School of Science and Engineering, Yamagata University, 4-3-16 Jonan, Yonezawa 992-8510, Japan
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Sakata Y, Mayama H, Nonomura Y. Friction dynamics of moisturized human skin under non-linear motion. Int J Cosmet Sci 2021; 44:20-29. [PMID: 34767633 DOI: 10.1111/ics.12751] [Citation(s) in RCA: 5] [Impact Index Per Article: 1.7] [Reference Citation Analysis] [Abstract] [Key Words] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Received: 10/10/2021] [Revised: 11/09/2021] [Accepted: 11/10/2021] [Indexed: 11/30/2022]
Abstract
OBJECTIVE Evaluating friction in human skin is important to assess its condition and the effects of skincare cosmetics. In this study, we evaluated the friction dynamics of moisturized skin to show the effects of moisturization on its mechanical properties. METHODS Friction force was evaluated using a sinusoidal motion friction evaluation system. The skin of the upper arm of 20 subjects was rubbed using a contact probe. The water content of the stratum corneum and the softness of the skin were measured using a Corneometer and a Cutometer, respectively. RESULTS When human skin was treated with water or 10 wt% glycerol aqueous solution, the friction coefficients increased by 0.23 ± 0.01 and 0.17 ± 0.14, respectively, and the delay times (normalized by calculating the time interval from contact with the probe to the friction response divided by the friction time for one round trip) increased by 0.048 ± 0.034 and 0.055 ± 0.024, respectively. Three different friction profiles were observed: (a) a stable pattern, in which a smooth profile was observed during the sliding process; (b) an oscillation pattern, in which significant oscillation was obtained; and (c) a stick pattern, in which the friction coefficient increased even during the deceleration process. In the case of untreated skin, the oscillation pattern was observed for the majority of subjects. The appearance rate of the stick pattern increased by 80.3% ± 29.4% after treatment with 10 wt% glycerol aqueous solution. These characteristic friction profiles can be explained by a two-step friction model consisting of two modes: (a) friction at the skin surface and (b) the delayed response due to skin deformation. CONCLUSION Moisturizing the skin with water or 10 wt% glycerol aqueous solution increased the friction coefficient and delay time, dramatically changing the friction profile. These changes were considered to be due to the swelling and softening of the stratum corneum and the increased true contact area between the contact probe and the skin surface.
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Affiliation(s)
- Yuka Sakata
- Department of Biochemical Engineering, Graduate School of Science and Engineering, Yamagata University, Yonezawa, Japan
| | - Hiroyuki Mayama
- Department of Chemistry, Asahikawa Medical University, Asahikawa, Japan
| | - Yoshimune Nonomura
- Department of Biochemical Engineering, Graduate School of Science and Engineering, Yamagata University, Yonezawa, Japan
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7
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Kikuchi K, Mayama H, Nonomura Y. Nonlinear Friction Dynamics of Oil-in-Water and Water-in-Oil Emulsions on Hydrogel Surfaces. LANGMUIR : THE ACS JOURNAL OF SURFACES AND COLLOIDS 2021; 37:8045-8052. [PMID: 34157225 DOI: 10.1021/acs.langmuir.1c01339] [Citation(s) in RCA: 3] [Impact Index Per Article: 1.0] [Reference Citation Analysis] [Abstract] [MESH Headings] [Track Full Text] [Subscribe] [Scholar Register] [Indexed: 06/13/2023]
Abstract
In this study, the friction properties of emulsions in an oral environment were investigated to understand the food-texture recognition mechanisms occurring on biological surfaces. Numerous publications have suggested that the friction phenomena depend on friction conditions, such as the surface characteristics, as well as the shape and movement of contact probes. Traditional friction evaluation systems are unsuitable for mimicking the oral environment. Thus, in this study, the friction forces between two fractal agar gel substrates in an emulsion were examined using a sinusoidal motion friction evaluation system that effectively mimics the oral environment. The physical properties of the fractal agar gel, including the elasticity, hydrophilicity, and surface roughness, were analogous to those of the human tongue. Furthermore, the sinusoidal motion imitated the movements of living organisms. Depending on the samples, three friction profiles were observed. For water, the surfactant aqueous solution, and olive oil, the friction profiles of the outward and homeward processes were symmetric (stable pattern). Interestingly, for an oil-in-water (O/W) emulsion, friction behaviors with not only an asymmetric friction profile (unstable pattern I) but also a lubrication phenomenon, which temporarily decreased the friction force (unstable pattern II), were noted. The probability for the appearance of unstable patterns and adhesion force between the gel substrates increased with the oil content of the O/W emulsions. These characteristic friction phenomena were attributed to the strong adhesive force in the emulsion, which was sandwiched between the agar gel substrates. The findings obtained in this study would contribute significantly to understanding the food-texture recognition mechanisms and dynamic phenomena occurring on biological surfaces.
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Affiliation(s)
- Kei Kikuchi
- Department of Biochemical Engineering, Graduate School of Science and Engineering, Yamagata University, 4-3-16 Jonan, Yonezawa 992-8510, Japan
| | - Hiroyuki Mayama
- Department of Chemistry, Asahikawa Medical University, 2-1-1-1 Midorigaoka-Higashi, Asahikawa 078-8510, Japan
| | - Yoshimune Nonomura
- Department of Biochemical Engineering, Graduate School of Science and Engineering, Yamagata University, 4-3-16 Jonan, Yonezawa 992-8510, Japan
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Kato Y, Kuhara R, Sakamoto M, Tsuchiya R, Nagatani N, Nonomura Y. Recognition Mechanism of the "Sara-sara Feel" of Cosmetic Powders. J Oleo Sci 2021; 70:195-202. [PMID: 33456008 DOI: 10.5650/jos.ess20252] [Citation(s) in RCA: 3] [Impact Index Per Article: 1.0] [Reference Citation Analysis] [Abstract] [Key Words] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Indexed: 11/13/2022] Open
Abstract
The Sara-sara feel, which means "a state in which things are not damp or sticky and feel dry," is a preferred tactile sensation when people touch human skin, hair, clothing, and cosmetics. In this study, the Sara-sara feel was evaluated for silicone powder, cellulose powder, hydrophobized sericite powder, and various mixes of these powders. It was found that the highest Sara-sara feel score was achieved by the silicone powder. A multiple regression analysis showed that the Sara-sara feel was strongly correlated with a slippery feel. The relationship between certain physical properties, e.g., particle size distribution, and the slippery feel was analyzed to demonstrate how the subjects felt the slippery feel. It was observed that as the friction coefficient µ k was reduced, most subjects strongly felt the slippery feel. This coefficient slightly decreased when the composition of spherical silicone powder increased, because the contact area between spherical particles is smaller than that between plate and amorphous particles.
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Affiliation(s)
- Yuta Kato
- Department of Biochemical Engineering, Graduate School of Science and Engineering, Yamagata University
| | - Rieko Kuhara
- Department of Biochemical Engineering, Graduate School of Science and Engineering, Yamagata University
| | - Maki Sakamoto
- Department of Informatics, The University of Electro-Communications
| | | | | | - Yoshimune Nonomura
- Department of Biochemical Engineering, Graduate School of Science and Engineering, Yamagata University
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9
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Shinomiya K, Okawara H, Kikuchi K, Mayama H, Nonomura Y. Friction Dynamics of Hydrogel Substrates with a Fractal Surface: Effects of Thickness. ACS OMEGA 2020; 5:16406-16412. [PMID: 32685803 PMCID: PMC7364433 DOI: 10.1021/acsomega.9b04184] [Citation(s) in RCA: 2] [Impact Index Per Article: 0.5] [Reference Citation Analysis] [Abstract] [Track Full Text] [Figures] [Subscribe] [Scholar Register] [Received: 02/05/2020] [Accepted: 06/17/2020] [Indexed: 06/11/2023]
Abstract
Interfacial phenomena on soft and wet materials, such as hydrogels, are important for modeling physical phenomena, such as friction, wetting, and adhesion on hydrophilic biosurfaces. Interfacial phenomena on soft material surfaces are not only affected by the properties of the surface but also by the geometry of the substrate. However, there are few reports on the influence of geometry and deformability on friction behavior at gel interfaces. In this study, we evaluate the effects of the thickness (H) of the upper agar gel layer on the friction force between gels under a sinusoidal movement. Although H does not significantly affect the friction force or pattern, the normalized delay time (δ), which is the normalized time lag in the friction force response to the contact probe's movement, increases with H. A regression analysis between δ and H shows that δ increased linearly with H. We present a simple model incorporating a shear modulus to qualitatively explain the experimental results. The analysis and our model indicate that one must not only consider surface properties, such as adhesion, but also thickness and rigidity when studying friction behavior at the gel-surface interface. These findings will be useful for understanding friction phenomena on soft biological systems, such as the tongue, throat, esophagus, and gut surfaces.
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Affiliation(s)
- Koki Shinomiya
- Department of Biochemical Engineering, Graduate School of Science and Engineering, Yamagata University, 4-3-16 Jonan, Yonezawa 992-8510, Japan
| | - Hina Okawara
- Department of Biochemical Engineering, Graduate School of Science and Engineering, Yamagata University, 4-3-16 Jonan, Yonezawa 992-8510, Japan
| | - Kei Kikuchi
- Department of Biochemical Engineering, Graduate School of Science and Engineering, Yamagata University, 4-3-16 Jonan, Yonezawa 992-8510, Japan
| | - Hiroyuki Mayama
- Department of Chemistry, Asahikawa Medical University, 2-1-1-1 Midorigaoka-Higashi, Asahikawa 078-8510, Japan
| | - Yoshimune Nonomura
- Department of Biochemical Engineering, Graduate School of Science and Engineering, Yamagata University, 4-3-16 Jonan, Yonezawa 992-8510, Japan
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Okawara H, Shinomiya K, Fujita M, Koda T, Nishioka A, Nonomura Y. Nonlinear friction dynamics in the cognitive process of food textures: Thickness of polysaccharide solution. J Texture Stud 2020; 51:779-788. [DOI: 10.1111/jtxs.12538] [Citation(s) in RCA: 2] [Impact Index Per Article: 0.5] [Reference Citation Analysis] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Received: 01/17/2020] [Revised: 05/16/2020] [Accepted: 05/17/2020] [Indexed: 11/28/2022]
Affiliation(s)
- Hina Okawara
- Department of Biochemical Engineering, Graduate School of Science and Engineering Yamagata University Yonezawa Japan
| | - Koki Shinomiya
- Department of Biochemical Engineering, Graduate School of Science and Engineering Yamagata University Yonezawa Japan
| | - Minoru Fujita
- Department of Organic Materials Science, Graduate School of Organic Materials Science Yamagata University Yonezawa Japan
| | - Tomonori Koda
- Department of Organic Materials Science, Graduate School of Organic Materials Science Yamagata University Yonezawa Japan
| | - Akihiro Nishioka
- Department of Organic Materials Science, Graduate School of Organic Materials Science Yamagata University Yonezawa Japan
| | - Yoshimune Nonomura
- Department of Biochemical Engineering, Graduate School of Science and Engineering Yamagata University Yonezawa Japan
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11
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Affiliation(s)
- Yoshimune Nonomura
- Department of Biochemical Engineering, Graduate School of Science and Engineering, Yamagata University
| | - Haruka Ouchi
- Department of Biochemical Engineering, Graduate School of Science and Engineering, Yamagata University
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12
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Sasaki S, Yano H, Koda T, Nishioka A, Nonomura Y. Friction Force on Hydrogel Containing Nanoparticles. CHEM LETT 2019. [DOI: 10.1246/cl.190095] [Citation(s) in RCA: 0] [Impact Index Per Article: 0] [Reference Citation Analysis] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Indexed: 11/12/2022]
Affiliation(s)
- Shiori Sasaki
- Department of Biochemical Engineering, Graduate School of Science and Engineering, Yamagata University, 4-3-16 Jonan, Yonezawa, Yamagata 992-8510, Japan
| | - Hiroko Yano
- Department of Organic Materials Science, Graduate School of Science and Engineering, Yamagata University, 4-3-16 Jonan, Yonezawa, Yamagata 992-8510, Japan
| | - Tomonori Koda
- Department of Organic Materials Science, Graduate School of Science and Engineering, Yamagata University, 4-3-16 Jonan, Yonezawa, Yamagata 992-8510, Japan
| | - Akihiro Nishioka
- Department of Organic Materials Science, Graduate School of Science and Engineering, Yamagata University, 4-3-16 Jonan, Yonezawa, Yamagata 992-8510, Japan
| | - Yoshimune Nonomura
- Department of Biochemical Engineering, Graduate School of Science and Engineering, Yamagata University, 4-3-16 Jonan, Yonezawa, Yamagata 992-8510, Japan
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Okawara H, Shinomiya K, Nonomura Y. Friction Dynamics on Rough Agar Gel Surfaces. J Oleo Sci 2019; 68:873-879. [DOI: 10.5650/jos.ess19099] [Citation(s) in RCA: 5] [Impact Index Per Article: 1.0] [Reference Citation Analysis] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Indexed: 11/13/2022] Open
Affiliation(s)
- Hina Okawara
- Department of Biochemical Engineering, Graduate School of Science and Engineering, Yamagata University
| | - Koki Shinomiya
- Department of Biochemical Engineering, Graduate School of Science and Engineering, Yamagata University
| | - Yoshimune Nonomura
- Department of Biochemical Engineering, Graduate School of Science and Engineering, Yamagata University
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