DNA-Modulated Plasmon Resonance: Methods and Optical Applications

Dynamic Gold Nanostructures Based on DNA Self Assembly

The combination of DNA nanotechnology and Nano Gold (NG) plasmon has opened exciting possibilities for a new generation of functional plasmonic systems that exhibit tailored optical properties and find utility in various applications. In this review, the booming development of dynamic gold nanostructures are summarized, which are formed by DNA self-assembly using DNA-modified NG, DNA frameworks, and various driving forces. The utilization of bottom-up strategies enables precise control over the assembly of reversible and dynamic aggregations, nano-switcher structures, and robotic nanomachines capable of undergoing on-demand, reversible structural changes that profoundly impact their properties. Benefiting from the vast design possibilities, complete addressability, and sub-10 nm resolution, DNA duplexes, tiles, single-stranded tiles and origami structures serve as excellent platforms for constructing diverse 3D reconfigurable plasmonic nanostructures with tailored optical properties. Leveraging the responsive nature of DNA interactions, the fabrication of dynamic assemblies of NG becomes readily achievable, and environmental stimulation can be harnessed as a driving force for the nanomotors. It is envisioned that intelligent DNA-assembled NG nanodevices will assume increasingly important roles in the realms of biological, biomedical, and nanomechanical studies, opening a new avenue toward exploration and innovation.

Nucleic Acid Probes in Bio-Imaging and Diagnostics: Recent Advances in ODN-Based Fluorescent and Surface-Enhanced Raman Scattering Nanoparticle and Nanostructured Systems

Raman nanoparticle probes are a potent class of optical labels for the interrogation of pathological and physiological processes in cells, bioassays, and tissues. Herein, we review the recent advancements in fluorescent and Raman imaging using oligodeoxyribonucleotide (ODN)-based nanoparticles and nanostructures, which show promise as effective tools for live-cell analysis. These nanodevices can be used to investigate a vast number of biological processes occurring at various levels, starting from those involving organelles, cells, tissues, and whole living organisms. ODN-based fluorescent and Raman probes have contributed to the achievement of significant advancements in the comprehension of the role played by specific analytes in pathological processes and have inaugurated new possibilities for diagnosing health conditions. The technological implications that have emerged from the studies herein described could open new avenues for innovative diagnostics aimed at identifying socially relevant diseases like cancer through the utilization of intracellular markers and/or guide surgical procedures based on fluorescent or Raman imaging. Particularly complex probe structures have been developed within the past five years, creating a versatile toolbox for live-cell analysis, with each tool possessing its own strengths and limitations for specific studies. Analyzing the literature reports in the field, we predict that the development of ODN-based fluorescent and Raman probes will continue in the near future, disclosing novel ideas on their application in therapeutic and diagnostic strategies.

Rational Fabrication of Ag Nanocone Arrays Embedded with Ag NPs and Their Sensing Applications

Colloidal lithography is used to design and construct a high-performance plasmonic sensor based on Ag nanocone arrays embedded with Ag NPs. The surface plasmon polariton (SPP) of the Ag nanocone array and the localized surface plasmon resonance (LSPR) of Ag NPs inside the nanocones can both couple incident photons. Sharp reflectance troughs are considerably enhanced by coupling the SPPs and LSPR, which is made possible by carefully tuning the nanocone sizes. To maximize the line shape and sensitivity, other geometric factors, such as the thickness of the silver layer and the size of the Ag NPs, are modified. Finite-difference time-domain computations confirm these hypotheses and experimental findings. We use well-researched solvents with various refractive indices as a model system to demonstrate good sensing performance as a proof of concept. The crystal used in this investigation has the ideal refractive index sensitivity, having 500 nm lattice constant, 350 nm nanocone height, and 350 nm base diameter (aspect ratio = 1). The Ag nanocone array embedded with Ag NPs is a good contender for a sensing platform due to its compact structure and efficient read-out apparatus.

Single-Particle Measurements of Nanocatalysis with Dark-Field Microscopy

Due to the complexity of heterogeneous reactions and heterogeneities of individual catalyst particles in size, morphology, and the surrounding medium, it is very important to characterize the structure of nanocatalysts and measure the reaction process of nanocatalysis at the single-particle level. Traditional ensemble measurements, however, only provide averaged results of billions of nanoparticles (NPs), which do not help reveal structure–activity relationships and may overlook a few NPs with high activity. The advent of dark-field microscopy (DFM) combined with plasmonic resonance Rayleigh scattering (PRRS) spectroscopy provides a powerful means for directly recording the localized surface plasmon resonance (LSPR) spectrum of single plasmonic nanoparticles (PNPs), which also enables quantitative measurements. In recent years, DFM has developed rapidly for a series of single-particle catalytic reactions such as redox reactions, electrocatalytic reactions, and DNAzyme catalysis, with the ability to monitor the catalytic reaction process in real time and reveal the catalytic mechanism. This review provides a comprehensive overview of the fundamental principles and practical applications of DFM in measuring various kinds of catalysis (including chemocatalysis, electrocatalysis, photocatalysis, and biocatalysis) at the single-particle level. Perspectives on the remaining challenges and future trends in this field are also proposed.

Gap Effect on Electric Field Enhancement and Photothermal Conversion in Gold Nanostructures

Plasmonic optical tweezers and thermophoresis are promising tools for nanomaterial manipulation. When a gold nanostructure is irradiated with laser light, an electric field around the nanostructure is enhanced because of the localized surface plasmon resonance, which increases the optical radiation pressure applied to the nanomaterials. In addition, a temperature gradient is also generated by the photothermal conversion, and thermophoretic force is then generated. This study numerically evaluated the electric and temperature fields induced by the localized surface plasmon resonance between two gold nanostructures. Here, we focused on the effect of the gap width between nanostructures on the optical radiation pressure and thermophoretic force. The simulation results show that the electric field is locally enhanced according to the gap width, but the effect on the temperature rise due to the photothermal heating is small. This fact suggests that the gap effect between the nanostructures is particularly dominant in nanomanipulation using optical force, whereas it has little effect in nanomanipulation using thermophoresis.

Tetrahedral DNA-directed core-satellite assembly as SERS sensor for mercury ions at the single-particle level

To monitor the deteriorating mercury emissions, it is imperative to propose methods for detecting mercury ions (Hg²⁺) with sensitivity and selectivity. The SERS spectral-resolved single-particle detection approach can be carried out using dark-field optical microscopy (DFM) combined with Raman spectroscopy. Herein, we have designed a novel yet convenient single-particle detection assay for quantifying Hg²⁺ using DFM-correlated Raman spectroscopy. In the assay, a tetrahedral DNA-directed core-satellite nanostructure is used as the SERS probe. Especially, one edge of the tetrahedron is made up of a single-stranded DNA containing a Hg²⁺ aptamer, which reconfigures upon the specific recognition of Hg²⁺. As a result, the interparticle distance reduces from 4.5 to 1.2 nm, thus generating Raman signal enhancement. As a proof of concept, Hg²⁺ was detected in a linear range from 1 to 100 nM based on the variation in SERS intensity. Furthermore, the experimental results were supported by the finite difference time domain (FDTD) calculations. Owing to its high sensitivity and selectivity, this method was further employed to detect Hg²⁺ in practical tap water and lake water samples, revealing that the single-particle detection strategy holds great promise for Hg²⁺ analysis in real environment analysis.

Assembling gold nanobipyramids into chiral plasmonic nanostructures with DNA origami

Herein, we report the assembly of gold nanobipyramids (AuNBPs) into static and dynamic chiral plasmonic nanostructures via DNA origami. Compared with conventional chiral dimers of gold nanorods (AuNRs), AuNBP dimers exhibit more intriguing chiroptical responses, suggesting that they could be a superior alternative for constructing chiral plasmonic nanostructures for biosensing.

Enhanced Catalytic Activity of Magnetic Bimetallic Ag-Au Nanoparticles Mediated by Surface Plasmon Resonance

We firstly discover the enhanced catalytic activity of magnetic noble metal nanoparticles mediated by surface plasmon resonance. Under light irradiation with certain wavelength, the catalytic performance of magnetic noble metal nanoparticles shows changes with different degrees and directions that are associated with the surface plasmon resonance (SPR) of the noble metal. Moreover, the coupling of silver and gold allows the catalytic performance of magnetic bimetallic Ag-Au nanoparticles to show more positive response to surface plasmon resonance. The magnetic bimetallic Ag-Au nanoparticles show excellent catalytic performance toward the reduction reaction of aromatic nitro group, and corresponding rate constant of the catalytic reduction reaction increases about three times with light irradiation.

Photothermal Intracellular Delivery Using Gold Nanodisk Arrays

Local heating using pulsed laser-induced photothermal effects on plasmonic nanostructured substrates can be used for intracellular delivery applications. However, the fabrication of plasmonic nanostructured interfaces is hampered by complex nanomanufacturing schemes. Here, we demonstrate the fabrication of large-area plasmonic gold (Au) nanodisk arrays that enable photothermal intracellular delivery of biomolecular cargo at high efficiency. The Au nanodisks (350 nm in diameter) were fabricated using chemical lift-off lithography (CLL). Nanosecond laser pulses were used to excite the plasmonic nanostructures, thereby generating transient pores at the outer membranes of targeted cells that enable the delivery of biomolecules via diffusion. Delivery efficiencies of >98% were achieved using the cell impermeable dye calcein (0.6 kDa) as a model payload, while maintaining cell viabilities at >98%. The highly efficient intracellular delivery approach demonstrated in this work will facilitate translational studies targeting molecular screening and drug testing that bridge laboratory and clinical investigations.