1
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Rubel CZ, Ravn AK, Ho HC, Yang S, Li ZQ, Engle KM, Vantourout JC. Stereodivergent, Kinetically Controlled Isomerization of Terminal Alkenes via Nickel Catalysis. Angew Chem Int Ed Engl 2024; 63:e202320081. [PMID: 38494945 DOI: 10.1002/anie.202320081] [Citation(s) in RCA: 0] [Impact Index Per Article: 0] [Reference Citation Analysis] [Abstract] [Key Words] [Grants] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Received: 12/27/2023] [Revised: 03/05/2024] [Accepted: 03/17/2024] [Indexed: 03/19/2024]
Abstract
Because internal alkenes are more challenging synthetic targets than terminal alkenes, metal-catalyzed olefin mono-transposition (i.e., positional isomerization) approaches have emerged to afford valuable E- or Z- internal alkenes from their complementary terminal alkene feedstocks. However, the applicability of these methods has been hampered by lack of generality, commercial availability of precatalysts, and scalability. Here, we report a nickel-catalyzed platform for the stereodivergent E/Z-selective synthesis of internal alkenes at room temperature. Commercial reagents enable this one-carbon transposition of terminal alkenes to valuable E- or Z-internal alkenes via a Ni-H-mediated insertion/elimination mechanism. Though the mechanistic regime is the same in both systems, the underlying pathways that lead to each of the active catalysts are distinct, with the Z-selective catalyst forming from comproportionation of an oxidative addition complex followed by oxidative addition with substrate and the E-selective catalyst forming from protonation of the metal by the trialkylphosphonium salt additive. In each case, ligand sterics and denticity control stereochemistry and prevent over-isomerization.
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Affiliation(s)
- Camille Z Rubel
- Department of Chemistry, The Scripps Research Institute, 10550 N. Torrey Pines Road, La Jolla, CA 92037, USA
- Institut de Chimie et Biochimie Moléculaires et Supramoléculaires (ICMBS, UMR 5246 du CNRS), Université Lyon, Université Lyon 1, 1 rue Victor Grignard, 69100, Villeurbanne, France
| | - Anne K Ravn
- Department of Chemistry, The Scripps Research Institute, 10550 N. Torrey Pines Road, La Jolla, CA 92037, USA
| | - Hang Chi Ho
- Department of Chemistry, The Scripps Research Institute, 10550 N. Torrey Pines Road, La Jolla, CA 92037, USA
| | - Shenghua Yang
- Department of Chemistry, The Scripps Research Institute, 10550 N. Torrey Pines Road, La Jolla, CA 92037, USA
| | - Zi-Qi Li
- Department of Chemistry, The Scripps Research Institute, 10550 N. Torrey Pines Road, La Jolla, CA 92037, USA
| | - Keary M Engle
- Department of Chemistry, The Scripps Research Institute, 10550 N. Torrey Pines Road, La Jolla, CA 92037, USA
| | - Julien C Vantourout
- Institut de Chimie et Biochimie Moléculaires et Supramoléculaires (ICMBS, UMR 5246 du CNRS), Université Lyon, Université Lyon 1, 1 rue Victor Grignard, 69100, Villeurbanne, France
- Syngenta Crop Protection AG, Schaffauserstrasse, 4332, Stein, Switzerland
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2
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Chernyshov IY, Pidko EA. MACE: Automated Assessment of Stereochemistry of Transition Metal Complexes and Its Applications in Computational Catalysis. J Chem Theory Comput 2024; 20:2313-2320. [PMID: 38365199 PMCID: PMC10938507 DOI: 10.1021/acs.jctc.3c01313] [Citation(s) in RCA: 0] [Impact Index Per Article: 0] [Reference Citation Analysis] [Abstract] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Received: 11/30/2023] [Revised: 02/02/2024] [Accepted: 02/02/2024] [Indexed: 02/18/2024]
Abstract
Computational chemistry pipelines typically commence with geometry generation, well-established for organic compounds but presenting a considerable challenge for transition metal complexes. This paper introduces MACE, an automated computational workflow for converting chemist SMILES/MOL representations of the ligands and the metal center to 3D coordinates for all feasible stereochemical configurations for mononuclear octahedral and square planar complexes directly suitable for quantum chemical computations and implementation in high-throughput computational chemistry workflows. The workflow is validated through a structural screening of a data set of transition metal complexes extracted from the Cambridge Structural Database. To further illustrate the power and capabilities of MACE, we present the results of a model DFT study on the hemilability of pincer ligands in Ru, Fe, and Mn complexes, which highlights the utility of the workflow for both focused mechanistic studies and larger-scale high-throughput pipelines.
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Affiliation(s)
- Ivan Yu. Chernyshov
- Inorganic Systems Engineering,
Department of Chemical Engineering, Faculty of Applied Sciences, Delft University of Technology, Van der Maasweg 9, 2629 HZ, Delft, The Netherlands
| | - Evgeny A. Pidko
- Inorganic Systems Engineering,
Department of Chemical Engineering, Faculty of Applied Sciences, Delft University of Technology, Van der Maasweg 9, 2629 HZ, Delft, The Netherlands
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3
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Kalikadien AV, Mirza A, Hossaini AN, Sreenithya A, Pidko EA. Paving the road towards automated homogeneous catalyst design. Chempluschem 2024:e202300702. [PMID: 38279609 DOI: 10.1002/cplu.202300702] [Citation(s) in RCA: 0] [Impact Index Per Article: 0] [Reference Citation Analysis] [Abstract] [Key Words] [Grants] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Received: 11/29/2023] [Revised: 12/20/2023] [Indexed: 01/28/2024]
Abstract
In the past decade, computational tools have become integral to catalyst design. They continue to offer significant support to experimental organic synthesis and catalysis researchers aiming for optimal reaction outcomes. More recently, data-driven approaches utilizing machine learning have garnered considerable attention for their expansive capabilities. This Perspective provides an overview of diverse initiatives in the realm of computational catalyst design and introduces our automated tools tailored for high-throughput in silico exploration of the chemical space. While valuable insights are gained through methods for high-throughput in silico exploration and analysis of chemical space, their degree of automation and modularity are key. We argue that the integration of data-driven, automated and modular workflows is key to enhancing homogeneous catalyst design on an unprecedented scale, contributing to the advancement of catalysis research.
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Affiliation(s)
- Adarsh V Kalikadien
- Inorganic Systems Engineering, Department of Chemical Engineering, Faculty of Applied Sciences, Delft University of Technology, Van der Maasweg 9, 2629 HZ, Delft, The Netherlands
| | - Adrian Mirza
- Inorganic Systems Engineering, Department of Chemical Engineering, Faculty of Applied Sciences, Delft University of Technology, Van der Maasweg 9, 2629 HZ, Delft, The Netherlands
| | - Aydin Najl Hossaini
- Inorganic Systems Engineering, Department of Chemical Engineering, Faculty of Applied Sciences, Delft University of Technology, Van der Maasweg 9, 2629 HZ, Delft, The Netherlands
| | - Avadakkam Sreenithya
- Inorganic Systems Engineering, Department of Chemical Engineering, Faculty of Applied Sciences, Delft University of Technology, Van der Maasweg 9, 2629 HZ, Delft, The Netherlands
| | - Evgeny A Pidko
- Inorganic Systems Engineering, Department of Chemical Engineering, Faculty of Applied Sciences, Delft University of Technology, Van der Maasweg 9, 2629 HZ, Delft, The Netherlands
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4
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Zobernig DP, Luxner M, Stöger B, Veiros LF, Kirchner K. Hydrogenation of Terminal Alkenes Catalyzed by Air-Stable Mn(I) Complexes Bearing an N-Heterocyclic Carbene-Based PCP Pincer Ligand. Chemistry 2024; 30:e202302455. [PMID: 37814821 PMCID: PMC10952557 DOI: 10.1002/chem.202302455] [Citation(s) in RCA: 0] [Impact Index Per Article: 0] [Reference Citation Analysis] [Abstract] [Key Words] [Grants] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Received: 07/30/2023] [Revised: 10/09/2023] [Accepted: 10/10/2023] [Indexed: 10/11/2023]
Abstract
Efficient hydrogenations of terminal alkenes with molecular hydrogen catalyzed by well-defined bench stable Mn(I) complexes containing an N-heterocyclic carbene-based PCP pincer ligand are described. These reactions are environmentally benign and atom economic, implementing an inexpensive, earth abundant non-precious metal catalyst. A range of aromatic and aliphatic alkenes were efficiently converted into alkanes in good to excellent yields. The hydrogenation proceeds at 100 °C with catalyst loadings of 0.25-0.5 mol %, 2.5-5 mol % base (KOt Bu) and a hydrogen pressure of 20 bar. Mechanistic insight into the catalytic reaction is provided by means of DFT calculations.
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Affiliation(s)
- Daniel P. Zobernig
- Institute of Applied Synthetic ChemistryTU WienGetreidemarkt 9/163-AC1060WienAustria
| | - Michael Luxner
- Institute of Applied Synthetic ChemistryTU WienGetreidemarkt 9/163-AC1060WienAustria
| | | | - Luis F. Veiros
- Centro de Química Estrutural, Institute of Molecular SciencesDepartamento de Engenharia QuímicaInstituto Superior TécnicoUniversidade de LisboaAv. Rovisco Pais1049 001LisboaPortugal
| | - Karl Kirchner
- Institute of Applied Synthetic ChemistryTU WienGetreidemarkt 9/163-AC1060WienAustria
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5
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Hashemi A, Bougueroua S, Gaigeot MP, Pidko EA. HiREX: High-Throughput Reactivity Exploration for Extended Databases of Transition-Metal Catalysts. J Chem Inf Model 2023; 63:6081-6094. [PMID: 37738303 PMCID: PMC10565810 DOI: 10.1021/acs.jcim.3c00660] [Citation(s) in RCA: 1] [Impact Index Per Article: 1.0] [Reference Citation Analysis] [Abstract] [MESH Headings] [Grants] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Received: 05/02/2023] [Indexed: 09/24/2023]
Abstract
A method is introduced for the automated analysis of reactivity exploration for extended in silico databases of transition-metal catalysts. The proposed workflow is designed to tackle two key challenges for bias-free mechanistic explorations on large databases of catalysts: (1) automated exploration of the chemical space around each catalyst with unique structural and chemical features and (2) automated analysis of the resulting large chemical data sets. To address these challenges, we have extended the application of our previously developed ReNeGate method for bias-free reactivity exploration and implemented an automated analysis procedure to identify the classes of reactivity patterns within specific catalyst groups. Our procedure applied to an extended series of representative Mn(I) pincer complexes revealed correlations between structural and reactive features, pointing to new channels for catalyst transformation under the reaction conditions. Such an automated high-throughput virtual screening of systematically generated hypothetical catalyst data sets opens new opportunities for the design of high-performance catalysts as well as an accelerated method for expert bias-free high-throughput in silico reactivity exploration.
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Affiliation(s)
- Ali Hashemi
- Inorganic
Systems Engineering, Department of Chemical Engineering, Faculty of
Applied Sciences, Delft University of Technology, Van der Maasweg 9, Delft 2629 HZ, The Netherlands
| | - Sana Bougueroua
- Laboratoire
Analyse et Modélisation pour la Biologie et l’Environnement
(LAMBE) UMR8587, Paris-Saclay, Univ Evry,
CY Cergy Paris Université, CNRS, LAMBE UMR8587, Evry-Courcouronnes 91025, France
| | - Marie-Pierre Gaigeot
- Laboratoire
Analyse et Modélisation pour la Biologie et l’Environnement
(LAMBE) UMR8587, Paris-Saclay, Univ Evry,
CY Cergy Paris Université, CNRS, LAMBE UMR8587, Evry-Courcouronnes 91025, France
| | - Evgeny A. Pidko
- Inorganic
Systems Engineering, Department of Chemical Engineering, Faculty of
Applied Sciences, Delft University of Technology, Van der Maasweg 9, Delft 2629 HZ, The Netherlands
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6
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Oliemuller LK, Moore CE, Thomas CM. Synthesis, Characterization, and Reactivity of a (PPP) Pincer-Ligated Manganese Carbonyl Complex: Polarity Reversal Imparted by the Electrophilic Nature of a Planar Mn-P(NR 2) 2 Fragment. Inorg Chem 2023; 62:13997-14009. [PMID: 37585359 DOI: 10.1021/acs.inorgchem.3c01988] [Citation(s) in RCA: 2] [Impact Index Per Article: 2.0] [Reference Citation Analysis] [Abstract] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Indexed: 08/18/2023]
Abstract
The bonding interactions of a synthesized pincer-ligated manganese dicarbonyl complex featuring an N-heterocyclic phosphenium (NHP+) central moiety are explored. The pincer ligand [PPP]Cl was coordinated to a manganese center using Mn(CO)5Br and 254 nm light to afford the chlorophosphine complex (PPClP)Mn(CO)2Br (2) as a mixture of halide exchange products and stereoisomers. The target dicarbonyl species (PPP)Mn(CO)2 (3) was prepared by treatment of 2 with 2 equiv of the reductant KC8. Computational investigations and analysis of structural parameters were used to elucidate multiple bonding interactions between the Mn center and the PNHP atom in 3. The generation of a product of formal H2 addition, (PPHP)Mn(CO)2H (4), was achieved through the dehydrogenation of NH3BH3, affording a 2:1 mixture of 4syn:4anti stereoisomers. The nucleophilic nature of the Mn center and the electrophilic nature of the PNHP moiety were demonstrated through hydride addition and protonation of 3 to produce K(THF)2[(PPHP)Mn(CO)2] (6) and (PPClP)Mn(CO)2H (5), respectively. The observed reactivity suggests that 3 is best described as a Mn-I/NHP+ complex, in contrast to pincer-ligated dicarbonyl manganese analogues typically assigned as MnI species.
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Affiliation(s)
- Leah K Oliemuller
- Department of Chemistry and Biochemistry, The Ohio State University, 100 West 18th Avenue, Columbus, Ohio 43210, United States
| | - Curtis E Moore
- Department of Chemistry and Biochemistry, The Ohio State University, 100 West 18th Avenue, Columbus, Ohio 43210, United States
| | - Christine M Thomas
- Department of Chemistry and Biochemistry, The Ohio State University, 100 West 18th Avenue, Columbus, Ohio 43210, United States
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7
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Yang W, Filonenko GA, Pidko EA. Performance of homogeneous catalysts viewed in dynamics. Chem Commun (Camb) 2023; 59:1757-1768. [PMID: 36683401 PMCID: PMC9910057 DOI: 10.1039/d2cc05625a] [Citation(s) in RCA: 4] [Impact Index Per Article: 4.0] [Reference Citation Analysis] [Abstract] [Track Full Text] [Figures] [Journal Information] [Subscribe] [Scholar Register] [Indexed: 01/15/2023]
Abstract
Effective assessment of catalytic performance is the foundation for the rational design and development of new catalysts with superior performance. The ubiquitous screening/optimization studies use reaction yields as the sole performance metric in an approach that often neglects the complexity of the catalytic system and intrinsic reactivities of the catalysts. Using an example of hydrogenation catalysis, we examine the transient behavior of catalysts that are often encountered in activation, deactivation and catalytic turnover processes. Each of these processes and the reaction environment in which they take place are gradually shown to determine the real-time catalyst speciation and the resulting kinetics of the overall catalytic reaction. As a result, the catalyst performance becomes a complex and time-dependent metric defined by multiple descriptors apart from the reaction yield. This behaviour is not limited to hydrogenation catalysis and affects various catalytic transformations. In this feature article, we discuss these catalytically relevant descriptors in an attempt to arrive at a comprehensive depiction of catalytic performance.
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Affiliation(s)
- Wenjun Yang
- Inorganic Systems Engineering group, Department of Chemical Engineering, Faculty of Applied Sciences, Delft University of Technology, Van der Maasweg 9, 2629 HZ, Delft, The Netherlands.
| | - Georgy A. Filonenko
- Inorganic Systems Engineering group, Department of Chemical Engineering, Faculty of Applied Sciences, Delft University of Technology, Van der Maasweg 92629 HZDelftThe Netherlands
| | - Evgeny A. Pidko
- Inorganic Systems Engineering group, Department of Chemical Engineering, Faculty of Applied Sciences, Delft University of Technology, Van der Maasweg 92629 HZDelftThe Netherlands
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8
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Pandey B, Krause JA, Guan H. Methyl Effects on the Stereochemistry and Reactivity of PPP-Ligated Iron Hydride Complexes. Inorg Chem 2023; 62:967-978. [PMID: 36602907 DOI: 10.1021/acs.inorgchem.2c03803] [Citation(s) in RCA: 0] [Impact Index Per Article: 0] [Reference Citation Analysis] [Abstract] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Indexed: 01/06/2023]
Abstract
Iron dihydride complexes are key intermediates in many iron-catalyzed reactions. Previous efforts to study molecules of this type have led to the discovery of a remarkably stable cis-FeH2 complex, which is supported by bis[2-(diisopropylphosphino)phenyl]phosphine (iPrPPHP) along with CO. In this work, the hydrogen on the central phosphorus has been replaced with a methyl group, and the corresponding iron carbonyl dichloride, hydrido chloride, and dihydride complexes have been synthesized. The addition of the methyl group favors the anti configuration for the Me-P-Fe-H moiety and the trans geometry for the H-Fe-CO motif, which is distinctively different from the iPrPPHP system. Furthermore, it increases the thermal stability of the dihydride complex, cis-(iPrPPMeP)Fe(CO)H2 (iPrPPMeP = bis[2-(diisopropylphosphino)phenyl]methylphosphine). The variations in stereochemistry and compound stability contribute greatly to the differences between the two PPP systems in reactions with PhCHO, CS2, and HCO2H.
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Affiliation(s)
- Bedraj Pandey
- Department of Chemistry, University of Cincinnati, P.O. Box 210172, Cincinnati, Ohio45221-0172, United States
| | - Jeanette A Krause
- Department of Chemistry, University of Cincinnati, P.O. Box 210172, Cincinnati, Ohio45221-0172, United States
| | - Hairong Guan
- Department of Chemistry, University of Cincinnati, P.O. Box 210172, Cincinnati, Ohio45221-0172, United States
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