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Zhang M, Cai H, Pang C, Chen Z, Ling D, Jin Z, Chi YR. Design, Synthesis, and Herbicidal Evaluation of Pyrrolidinone-Containing 2-Phenylpyridine Derivatives as Novel Protoporphyrinogen Oxidase Inhibitors. JOURNAL OF AGRICULTURAL AND FOOD CHEMISTRY 2024; 72:10218-10226. [PMID: 38666644 DOI: 10.1021/acs.jafc.3c09173] [Citation(s) in RCA: 0] [Impact Index Per Article: 0] [Reference Citation Analysis] [Abstract] [Key Words] [MESH Headings] [Track Full Text] [Subscribe] [Scholar Register] [Indexed: 05/09/2024]
Abstract
In this work, a series of pyrrolidinone-containing 2-phenylpyridine derivatives were synthesized and evaluated as novel protoporphyrinogen IX oxidase (PPO, EC 1.3.3.4) inhibitors for herbicide development. At 150 g ai/ha, compounds 4d, 4f, and 4l can inhibit the grassy weeds of Echinochloa crus-galli (EC), Digitaria sanguinalis (DS), and Lolium perenne (LP) with a range of 60 to 90%. Remarkably, at 9.375 g ai/ha, these compounds showed 100% inhibition effects against broadleaf weeds of Amaranthus retroflexus (AR) and Abutilon theophrasti (AT), which were comparable to the performance of the commercial herbicides flumioxazin (FLU) and saflufenacil (SAF) and better than that of acifluorfen (ACI). Molecular docking analyses revealed significant hydrogen bonding and π-π stacking interactions between compounds 4d and 4l with Arg98, Asn67, and Phe392, respectively. Additionally, representative compounds were chosen for in vivo assessment of PPO inhibitory activity, with compounds 4d, 4f, and 4l demonstrating excellent inhibitory effects. Notably, compounds 4d and 4l induced the accumulation of reactive oxygen species (ROS) and a reduction in the chlorophyll (Chl) content. Consequently, compounds 4d, 4f, and 4l are promising lead candidates for the development of novel PPO herbicides.
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Affiliation(s)
- Meng Zhang
- National Key Laboratory of Green Pesticide, Key Laboratory of Green Pesticide and Agricultural Bioengineering, Ministry of Education, Guizhou University, Huaxi District, Guiyang 550025, People's Republic of China
| | - Hui Cai
- National Key Laboratory of Green Pesticide, Key Laboratory of Green Pesticide and Agricultural Bioengineering, Ministry of Education, Guizhou University, Huaxi District, Guiyang 550025, People's Republic of China
| | - Chen Pang
- National Key Laboratory of Green Pesticide, Key Laboratory of Green Pesticide and Agricultural Bioengineering, Ministry of Education, Guizhou University, Huaxi District, Guiyang 550025, People's Republic of China
| | - Zhongyin Chen
- National Key Laboratory of Green Pesticide, Key Laboratory of Green Pesticide and Agricultural Bioengineering, Ministry of Education, Guizhou University, Huaxi District, Guiyang 550025, People's Republic of China
| | - Dan Ling
- National Key Laboratory of Green Pesticide, Key Laboratory of Green Pesticide and Agricultural Bioengineering, Ministry of Education, Guizhou University, Huaxi District, Guiyang 550025, People's Republic of China
| | - Zhichao Jin
- National Key Laboratory of Green Pesticide, Key Laboratory of Green Pesticide and Agricultural Bioengineering, Ministry of Education, Guizhou University, Huaxi District, Guiyang 550025, People's Republic of China
| | - Yonggui Robin Chi
- National Key Laboratory of Green Pesticide, Key Laboratory of Green Pesticide and Agricultural Bioengineering, Ministry of Education, Guizhou University, Huaxi District, Guiyang 550025, People's Republic of China
- School of Chemistry, Chemical Engineering, and Biotechnology, Nanyang Technological University, 637371 Singapore
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2
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Nowak-Król A, Dydio P. The 55 th Bürgenstock Conference under the Banner of Sustainability. Angew Chem Int Ed Engl 2022; 61:e202214722. [PMID: 36477955 DOI: 10.1002/anie.202214722] [Citation(s) in RCA: 0] [Impact Index Per Article: 0] [Reference Citation Analysis] [Key Words] [MESH Headings] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Received: 10/06/2022] [Indexed: 12/12/2022]
Affiliation(s)
- Agnieszka Nowak-Król
- Institut für Anorganische Chemie and Institute for Sustainable Chemistry & Catalysis with Boron, Universität Würzburg, Am Hubland, 97074, Würzburg, Germany
| | - Paweł Dydio
- University of Strasbourg, CNRS, ISIS UMR 7006, 8 allée Gaspard Monge, 67000, Strasbourg, France
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Nowak‐Król A, Dydio P. The 55
th
Bürgenstock Conference under the Banner of Sustainability**. Angew Chem Int Ed Engl 2022. [DOI: 10.1002/ange.202214722] [Citation(s) in RCA: 0] [Impact Index Per Article: 0] [Reference Citation Analysis] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Indexed: 12/13/2022]
Affiliation(s)
- Agnieszka Nowak‐Król
- Institut für Anorganische Chemie and Institute for Sustainable Chemistry & Catalysis with Boron Universität Würzburg Am Hubland 97074 Würzburg Germany
| | - Paweł Dydio
- University of Strasbourg CNRS ISIS UMR 7006 8 allée Gaspard Monge 67000 Strasbourg France
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4
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Ramos De Dios SM, Tiwari VK, McCune CD, Dhokale RA, Berkowitz DB. Biomacromolecule-Assisted Screening for Reaction Discovery and Catalyst Optimization. Chem Rev 2022; 122:13800-13880. [PMID: 35904776 DOI: 10.1021/acs.chemrev.2c00213] [Citation(s) in RCA: 4] [Impact Index Per Article: 2.0] [Reference Citation Analysis] [Abstract] [MESH Headings] [Grants] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Indexed: 11/30/2022]
Abstract
Reaction discovery and catalyst screening lie at the heart of synthetic organic chemistry. While there are efforts at de novo catalyst design using computation/artificial intelligence, at its core, synthetic chemistry is an experimental science. This review overviews biomacromolecule-assisted screening methods and the follow-on elaboration of chemistry so discovered. All three types of biomacromolecules discussed─enzymes, antibodies, and nucleic acids─have been used as "sensors" to provide a readout on product chirality exploiting their native chirality. Enzymatic sensing methods yield both UV-spectrophotometric and visible, colorimetric readouts. Antibody sensors provide direct fluorescent readout upon analyte binding in some cases or provide for cat-ELISA (Enzyme-Linked ImmunoSorbent Assay)-type readouts. DNA biomacromolecule-assisted screening allows for templation to facilitate reaction discovery, driving bimolecular reactions into a pseudo-unimolecular format. In addition, the ability to use DNA-encoded libraries permits the barcoding of reactants. All three types of biomacromolecule-based screens afford high sensitivity and selectivity. Among the chemical transformations discovered by enzymatic screening methods are the first Ni(0)-mediated asymmetric allylic amination and a new thiocyanopalladation/carbocyclization transformation in which both C-SCN and C-C bonds are fashioned sequentially. Cat-ELISA screening has identified new classes of sydnone-alkyne cycloadditions, and DNA-encoded screening has been exploited to uncover interesting oxidative Pd-mediated amido-alkyne/alkene coupling reactions.
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Affiliation(s)
| | - Virendra K Tiwari
- Department of Chemistry, University of Nebraska-Lincoln, Lincoln, Nebraska 68588, United States
| | - Christopher D McCune
- Department of Chemistry, University of Nebraska-Lincoln, Lincoln, Nebraska 68588, United States
| | - Ranjeet A Dhokale
- Higuchi Biosciences Center, University of Kansas, Lawrence, Kansas 66047, United States
| | - David B Berkowitz
- Department of Chemistry, University of Nebraska-Lincoln, Lincoln, Nebraska 68588, United States
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5
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Poimanova EY, Shaposhnik PA, Anisimov DS, Zavyalova EG, Trul AA, Skorotetcky MS, Borshchev OV, Vinnitskiy DZ, Polinskaya MS, Krylov VB, Nifantiev NE, Agina EV, Ponomarenko SA. Biorecognition Layer Based On Biotin-Containing [1]Benzothieno[3,2- b][1]benzothiophene Derivative for Biosensing by Electrolyte-Gated Organic Field-Effect Transistors. ACS APPLIED MATERIALS & INTERFACES 2022; 14:16462-16476. [PMID: 35357127 DOI: 10.1021/acsami.1c24109] [Citation(s) in RCA: 3] [Impact Index Per Article: 1.5] [Reference Citation Analysis] [Abstract] [Key Words] [MESH Headings] [Track Full Text] [Subscribe] [Scholar Register] [Indexed: 06/14/2023]
Abstract
Requirements of speed and simplicity in testing stimulate the development of modern biosensors. Electrolyte-gated organic field-effect transistors (EGOFETs) are a promising platform for ultrasensitive, fast, and reliable detection of biological molecules for low-cost, point-of-care bioelectronic sensing. Biosensitivity of the EGOFET devices can be achieved by modification with receptors of one of the electronic active interfaces of the transistor gate or organic semiconductor surface. Functionalization of the latter gives the advantage in the creation of a planar architecture and compact devices for lab-on-chip design. Herein, we propose a universal, fast, and simple technique based on doctor blading and Langmuir-Schaefer methods for functionalization of the semiconducting surface of C8-BTBT-C8, allowing the fabrication of a large-scale biorecognition layer based on the novel functional derivative of BTBT-containing biotin fragments as a foundation for further biomodification. The fabricated devices are very efficient and operate stably in phosphate-buffered saline solution with high reproducibility of electrical properties in the EGOFET regime. The development of biorecognition properties of the proposed biolayer is based on the streptavidin-biotin interactions between the consecutive layers and can be used for a wide variety of receptors. As a proof-of-concept, we demonstrate the specific response of the BTBT-based biorecognition layer in EGOFETs to influenza A virus (H7N1 strain). The elaborated approach to biorecognition layer formation is appropriate but not limited to aptamer-based receptor molecules and can be further applied for fabricating several biosensors for various analytes on one substrate and paves the way for "electronic tongue" creation.
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Affiliation(s)
- Elena Yu Poimanova
- Enikolopov Institute of Synthetic Polymeric Materials of Russian Academy of Sciences, Profsoyuznaya Str. 70, 117393 Moscow, Russian Federation
| | - Polina A Shaposhnik
- Enikolopov Institute of Synthetic Polymeric Materials of Russian Academy of Sciences, Profsoyuznaya Str. 70, 117393 Moscow, Russian Federation
- Chemistry Department, Lomonosov Moscow State University, Leninskiye Gory 1/3, 119991 Moscow, Russian Federation
| | - Daniil S Anisimov
- Enikolopov Institute of Synthetic Polymeric Materials of Russian Academy of Sciences, Profsoyuznaya Str. 70, 117393 Moscow, Russian Federation
| | - Elena G Zavyalova
- Chemistry Department, Lomonosov Moscow State University, Leninskiye Gory 1/3, 119991 Moscow, Russian Federation
| | - Askold A Trul
- Enikolopov Institute of Synthetic Polymeric Materials of Russian Academy of Sciences, Profsoyuznaya Str. 70, 117393 Moscow, Russian Federation
| | - Maxim S Skorotetcky
- Enikolopov Institute of Synthetic Polymeric Materials of Russian Academy of Sciences, Profsoyuznaya Str. 70, 117393 Moscow, Russian Federation
| | - Oleg V Borshchev
- Enikolopov Institute of Synthetic Polymeric Materials of Russian Academy of Sciences, Profsoyuznaya Str. 70, 117393 Moscow, Russian Federation
| | - Dmitry Z Vinnitskiy
- Enikolopov Institute of Synthetic Polymeric Materials of Russian Academy of Sciences, Profsoyuznaya Str. 70, 117393 Moscow, Russian Federation
| | - Marina S Polinskaya
- Zelinsky Institute of Organic Chemistry of Russian Academy of Sciences, Leninskiy pr. 47, 119991 Moscow, Russian Federation
| | - Vadim B Krylov
- Zelinsky Institute of Organic Chemistry of Russian Academy of Sciences, Leninskiy pr. 47, 119991 Moscow, Russian Federation
| | - Nikolay E Nifantiev
- Zelinsky Institute of Organic Chemistry of Russian Academy of Sciences, Leninskiy pr. 47, 119991 Moscow, Russian Federation
| | - Elena V Agina
- Enikolopov Institute of Synthetic Polymeric Materials of Russian Academy of Sciences, Profsoyuznaya Str. 70, 117393 Moscow, Russian Federation
| | - Sergey A Ponomarenko
- Enikolopov Institute of Synthetic Polymeric Materials of Russian Academy of Sciences, Profsoyuznaya Str. 70, 117393 Moscow, Russian Federation
- Chemistry Department, Lomonosov Moscow State University, Leninskiye Gory 1/3, 119991 Moscow, Russian Federation
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Liang J, Rao Y, Zhu W, Wen T, Huang J, Chen Z, Chen L, Li Y, Chen X, Zhu Z. AgNO 3 as Nitrogen Source for Cu-Catalyzed Cyclization of Oximes with Isocyanates: A Facile Route to N-2-Aryl-1,2,3-triazoles. Org Lett 2021; 23:7028-7032. [PMID: 34459610 DOI: 10.1021/acs.orglett.1c02323] [Citation(s) in RCA: 4] [Impact Index Per Article: 1.3] [Reference Citation Analysis] [Abstract] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Indexed: 11/29/2022]
Abstract
A versatile copper-catalyzed [3 + 1 + 1] annulation of oximes and isocyanates with AgNO3 is described. In this conversion, AgNO3 and isocyanates instead of conventional azide or diazonium reagents were used as the nitrogen source. This three-component transformation was achieved by cleaving N-O/C-H/C-N bonds and building C═N/N-N bonds, which provides a strategy to prepare N-2-aryl-1,2,3-triazoles with a good substrate and functional compatibility.
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Affiliation(s)
- Jingwen Liang
- School of Biotechnology and Health Sciences, Wuyi University, Jiangmen 529020, China
| | - Yingqi Rao
- School of Biotechnology and Health Sciences, Wuyi University, Jiangmen 529020, China
| | - Weidong Zhu
- School of Biotechnology and Health Sciences, Wuyi University, Jiangmen 529020, China
| | - Tingting Wen
- School of Biotechnology and Health Sciences, Wuyi University, Jiangmen 529020, China
| | - Junjie Huang
- School of Biotechnology and Health Sciences, Wuyi University, Jiangmen 529020, China
| | - Zhichao Chen
- School of Biotechnology and Health Sciences, Wuyi University, Jiangmen 529020, China
| | - Lu Chen
- School of Biotechnology and Health Sciences, Wuyi University, Jiangmen 529020, China
| | - Yibiao Li
- School of Biotechnology and Health Sciences, Wuyi University, Jiangmen 529020, China
| | - Xiuwen Chen
- School of Biotechnology and Health Sciences, Wuyi University, Jiangmen 529020, China
| | - Zhongzhi Zhu
- School of Biotechnology and Health Sciences, Wuyi University, Jiangmen 529020, China
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7
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Porte K, Riomet M, Figliola C, Audisio D, Taran F. Click and Bio-Orthogonal Reactions with Mesoionic Compounds. Chem Rev 2021; 121:6718-6743. [PMID: 33238101 DOI: 10.1021/acs.chemrev.0c00806] [Citation(s) in RCA: 26] [Impact Index Per Article: 8.7] [Reference Citation Analysis] [Abstract] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Indexed: 12/13/2022]
Abstract
Click and bio-orthogonal reactions are dominated by cycloaddition reactions in general and 1,3-dipolar cycloadditions in particular. Among the dipoles routinely used for click chemistry, azides, nitrones, isonitriles, and nitrile oxides are the most popular. This review is focused on the emerging click chemistry that uses mesoionic compounds as dipole partners. Mesoionics are a very old family of molecules, but their use as reactants for click and bio-orthogonal chemistry is quite recent. The facility to derivatize these dipoles and to tune their reactivity toward cycloaddition reactions makes mesoionics an attractive opportunity for future click chemistry development. In addition, some compounds from this family are able to undergo click-and-release reactions, finding interesting applications in cells, as well as in animals. This review covers the synthetic access to main mesoionics, their reaction with dipolarophiles, and recent applications in chemical biology and heterocycle synthesis.
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Affiliation(s)
- Karine Porte
- Université Paris-Saclay, CEA, INRAE, Département Médicaments et Technologies pour la Santé (DMTS), SCBM, 91191 Gif-sur-Yvette, France
| | - Margaux Riomet
- Université Paris-Saclay, CEA, INRAE, Département Médicaments et Technologies pour la Santé (DMTS), SCBM, 91191 Gif-sur-Yvette, France
| | - Carlotta Figliola
- Université Paris-Saclay, CEA, INRAE, Département Médicaments et Technologies pour la Santé (DMTS), SCBM, 91191 Gif-sur-Yvette, France
| | - Davide Audisio
- Université Paris-Saclay, CEA, INRAE, Département Médicaments et Technologies pour la Santé (DMTS), SCBM, 91191 Gif-sur-Yvette, France
| | - Frédéric Taran
- Université Paris-Saclay, CEA, INRAE, Département Médicaments et Technologies pour la Santé (DMTS), SCBM, 91191 Gif-sur-Yvette, France
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Synthesis of 6,7-Dihydro-1 H,5 H-pyrazolo[1,2- a]pyrazoles by Azomethine Imine-Alkyne Cycloadditions Using Immobilized Cu(II)-Catalysts. Molecules 2021; 26:molecules26020400. [PMID: 33451154 PMCID: PMC7828622 DOI: 10.3390/molecules26020400] [Citation(s) in RCA: 5] [Impact Index Per Article: 1.7] [Reference Citation Analysis] [Abstract] [Key Words] [Track Full Text] [Download PDF] [Figures] [Journal Information] [Subscribe] [Scholar Register] [Received: 12/09/2020] [Revised: 01/07/2021] [Accepted: 01/11/2021] [Indexed: 11/17/2022] Open
Abstract
A series of 12 silica gel-bound enaminones and their Cu(II) complexes were prepared and tested for their suitability as heterogeneous catalysts in azomethine imine-alkyne cycloadditions (CuAIAC). Immobilized Cu(II)-enaminone complexes showed promising catalytic activity in the CuAIAC reaction, but these new catalysts suffered from poor reusability. This was not due to the decoordination of copper ions, as the use of enaminone ligands with additional complexation sites resulted in negligible improvement. On the other hand, reusability was improved by the use of 4-aminobenzoic acid linker, attached to 3-aminopropyl silica gel via an amide bond to the enaminone over the more hydrolytically stable N-arylenamine C-N bond. The study showed that silica gel-bound Cu(II)-enaminone complexes are readily available and suitable heterogeneous catalysts for the synthesis of 6,7-dihydro-1H,5H-pyrazolo[1,2-a]pyrazoles.
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10
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Cherepanov IA, Moiseev SK. Recent developments in the chemistry of sydnones and sydnone imines. ADVANCES IN HETEROCYCLIC CHEMISTRY 2020. [DOI: 10.1016/bs.aihch.2019.11.003] [Citation(s) in RCA: 11] [Impact Index Per Article: 2.8] [Reference Citation Analysis] [Track Full Text] [Subscribe] [Scholar Register] [Indexed: 01/21/2023]
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11
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Chen CY, Lu X, Holland MC, Lv S, Ji X, Liu W, Liu J, Depre D, Westerduin P. Synthesis of 2-Substituted 1,2,3-Triazoles via an Intramolecular N
-N
Bond Formation. European J Org Chem 2019. [DOI: 10.1002/ejoc.201901519] [Citation(s) in RCA: 7] [Impact Index Per Article: 1.4] [Reference Citation Analysis] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Indexed: 11/10/2022]
Affiliation(s)
- Cheng-yi Chen
- API Small Molecule Development; Discovery Product Development & Supply; Janssen R&D; Hochstrasse 201 8205 Schaffhausen Switzerland
| | - Xiaowei Lu
- Zizhu Science Park; Discovery Product Development & Supply; Porton (Shanghai) R&D Center; 1299 Ziyue Road 200241 Shanghai Minhang District China
| | - Mareike C. Holland
- API Small Molecule Development; Discovery Product Development & Supply; Janssen R&D; Turnhoutseweg 30 2340 Beerse Belgium
| | - Shichang Lv
- Zizhu Science Park; Discovery Product Development & Supply; Porton (Shanghai) R&D Center; 1299 Ziyue Road 200241 Shanghai Minhang District China
| | - Xuebao Ji
- Zizhu Science Park; Discovery Product Development & Supply; Porton (Shanghai) R&D Center; 1299 Ziyue Road 200241 Shanghai Minhang District China
| | - Wei Liu
- Zizhu Science Park; Discovery Product Development & Supply; Porton (Shanghai) R&D Center; 1299 Ziyue Road 200241 Shanghai Minhang District China
| | - Jie Liu
- Zizhu Science Park; Discovery Product Development & Supply; Porton (Shanghai) R&D Center; 1299 Ziyue Road 200241 Shanghai Minhang District China
| | - Dominique Depre
- API Small Molecule Development; Discovery Product Development & Supply; Janssen R&D; Turnhoutseweg 30 2340 Beerse Belgium
| | - Pieter Westerduin
- API Small Molecule Development; Discovery Product Development & Supply; Janssen R&D; Turnhoutseweg 30 2340 Beerse Belgium
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12
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Du W, Liu W, Ma X, Cheng H, Jiang Y. Cu(OTf) 2-Catalyzed 1,2,3-triazole-ring-controlled selective phenolic O–H bond methylthiomethylation. SYNTHETIC COMMUN 2019. [DOI: 10.1080/00397911.2019.1634735] [Citation(s) in RCA: 0] [Impact Index Per Article: 0] [Reference Citation Analysis] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Indexed: 10/26/2022]
Affiliation(s)
- Weigen Du
- Faculty of Science, Kunming University of Science and Technology, Kunming, China
| | - Wei Liu
- School of Pharmacy, Nantong University, Nantong, China
| | - Xinyuan Ma
- Faculty of Science, Kunming University of Science and Technology, Kunming, China
| | - Huiling Cheng
- Faculty of Science, Kunming University of Science and Technology, Kunming, China
| | - Yubo Jiang
- Faculty of Science, Kunming University of Science and Technology, Kunming, China
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