1
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Guo L, Yang M, Dong B, Lewman S, Van Horn A, Jia S. Engineering Central Substitutions in Heptamethine Dyes for Improved Fluorophore Performance. JACS AU 2024; 4:3007-3017. [PMID: 39211623 PMCID: PMC11350720 DOI: 10.1021/jacsau.4c00343] [Citation(s) in RCA: 0] [Impact Index Per Article: 0] [Reference Citation Analysis] [Abstract] [Key Words] [Grants] [Track Full Text] [Figures] [Subscribe] [Scholar Register] [Received: 04/17/2024] [Revised: 07/27/2024] [Accepted: 07/29/2024] [Indexed: 09/04/2024]
Abstract
As a major family of red-shifted fluorophores that operate beyond visible light, polymethine dyes are pivotal in light-based biological techniques. However, methods for tuning this kind of fluorophores by structural modification remain restricted to bottom-up synthesis and modification using coupling or nucleophilic substitutions. In this study, we introduce a two-step, late-stage functionalization process for heptamethine dyes. This process enables the substitution of the central chlorine atom in the commonly used 4'-chloro heptamethine scaffold with various aryl groups using aryllithium reagents. This method borrows the building block and designs from the xanthene dye community and offers a mild and convenient way for the diversification of heptamethine fluorophores. Notably, this efficient conversion allows for the synthesis of heptamethine-X, the heptamethine scaffold with two ortho-substituents on the 4'-aryl modification, which brings enhanced stability and reduced aggregation to the fluorophore. We showcase the utility of this method by a facile synthesis of a fluorogenic, membrane-localizing fluorophore that outperforms its commercial counterparts with a significantly higher brightness and contrast. Overall, this method establishes the synthetic similarities between polymethine and xanthene fluorophores and provides a versatile and feasible toolbox for future optimizing heptamethine fluorophores for their biological applications.
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Affiliation(s)
- Lei Guo
- Department
of Civil Engineering, University of Arkansas,
Fayetteville, Fayetteville, Arkansas 72701, United States
| | - Meek Yang
- Department
of Chemistry and Biochemistry, University
of Arkansas, Fayetteville, Fayetteville, Arkansas 72701, United States
| | - Bin Dong
- Department
of Chemistry and Biochemistry, University
of Arkansas, Fayetteville, Fayetteville, Arkansas 72701, United States
| | - Seth Lewman
- Department
of Chemistry and Biochemistry, University
of Arkansas, Fayetteville, Fayetteville, Arkansas 72701, United States
| | - Alex Van Horn
- Department
of Chemistry and Biochemistry, University
of Arkansas, Fayetteville, Fayetteville, Arkansas 72701, United States
| | - Shang Jia
- Department
of Chemistry and Biochemistry, University
of Arkansas, Fayetteville, Fayetteville, Arkansas 72701, United States
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2
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Grover K, Koblova A, Pezacki AT, Chang CJ, New EJ. Small-Molecule Fluorescent Probes for Binding- and Activity-Based Sensing of Redox-Active Biological Metals. Chem Rev 2024; 124:5846-5929. [PMID: 38657175 DOI: 10.1021/acs.chemrev.3c00819] [Citation(s) in RCA: 0] [Impact Index Per Article: 0] [Reference Citation Analysis] [Abstract] [MESH Headings] [Grants] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Indexed: 04/26/2024]
Abstract
Although transition metals constitute less than 0.1% of the total mass within a human body, they have a substantial impact on fundamental biological processes across all kingdoms of life. Indeed, these nutrients play crucial roles in the physiological functions of enzymes, with the redox properties of many of these metals being essential to their activity. At the same time, imbalances in transition metal pools can be detrimental to health. Modern analytical techniques are helping to illuminate the workings of metal homeostasis at a molecular and atomic level, their spatial localization in real time, and the implications of metal dysregulation in disease pathogenesis. Fluorescence microscopy has proven to be one of the most promising non-invasive methods for studying metal pools in biological samples. The accuracy and sensitivity of bioimaging experiments are predominantly determined by the fluorescent metal-responsive sensor, highlighting the importance of rational probe design for such measurements. This review covers activity- and binding-based fluorescent metal sensors that have been applied to cellular studies. We focus on the essential redox-active metals: iron, copper, manganese, cobalt, chromium, and nickel. We aim to encourage further targeted efforts in developing innovative approaches to understanding the biological chemistry of redox-active metals.
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Affiliation(s)
- Karandeep Grover
- School of Chemistry, The University of Sydney, Sydney, New South Wales 2006, Australia
- Australian Research Council Centre of Excellence for Innovations in Peptide and Protein Science, The University of Sydney, Sydney, New South Wales 2006, Australia
| | - Alla Koblova
- School of Chemistry, The University of Sydney, Sydney, New South Wales 2006, Australia
- Australian Research Council Centre of Excellence for Innovations in Peptide and Protein Science, The University of Sydney, Sydney, New South Wales 2006, Australia
| | - Aidan T Pezacki
- Department of Chemistry, University of California, Berkeley, Berkeley, California 94720, United States
| | - Christopher J Chang
- Department of Chemistry, University of California, Berkeley, Berkeley, California 94720, United States
- Department of Molecular and Cell Biology, University of California, Berkeley, Berkeley, California 94720, United States
| | - Elizabeth J New
- School of Chemistry, The University of Sydney, Sydney, New South Wales 2006, Australia
- Australian Research Council Centre of Excellence for Innovations in Peptide and Protein Science, The University of Sydney, Sydney, New South Wales 2006, Australia
- Sydney Nano Institute, The University of Sydney, Sydney, New South Wales 2006, Australia
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3
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Dai M, Yang YJ, Sarkar S, Ahn KH. Strategies to convert organic fluorophores into red/near-infrared emitting analogues and their utilization in bioimaging probes. Chem Soc Rev 2023; 52:6344-6358. [PMID: 37608780 DOI: 10.1039/d3cs00475a] [Citation(s) in RCA: 11] [Impact Index Per Article: 11.0] [Reference Citation Analysis] [Abstract] [MESH Headings] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Indexed: 08/24/2023]
Abstract
Organic fluorophores aided by current microscopy imaging modalities are essential for studying biological systems. Recently, red/near-infrared emitting fluorophores have attracted great research efforts, as they enable bioimaging applications with reduced autofluorescence interference and light scattering, two significant obstacles for deep-tissue imaging, as well as reduced photodamage and photobleaching. Herein, we analyzed the current strategies to convert key organic fluorophores bearing xanthene, coumarin, and naphthalene cores into longer wavelength-emitting derivatives by focussing on their effectiveness and limitations. Together, we introduced typical examples of how such fluorophores can be used to develop molecular probes for biological analytes, along with key sensing features. Finally, we listed several critical issues to be considered in developing new fluorophores.
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Affiliation(s)
- Mingchong Dai
- Department of Chemistry, Pohang University of Science and Technology, Pohang, 37673, South Korea.
- CEDAR, Knight Cancer Institute, School of Medicine, Oregon Health & Science University, Portland, Oregon, 97201, USA.
| | - Yun Jae Yang
- Department of Chemistry, Pohang University of Science and Technology, Pohang, 37673, South Korea.
| | - Sourav Sarkar
- Department of Chemistry, Pohang University of Science and Technology, Pohang, 37673, South Korea.
| | - Kyo Han Ahn
- Department of Chemistry, Pohang University of Science and Technology, Pohang, 37673, South Korea.
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4
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Mao Z, Rha H, Kim J, You X, Zhang F, Tao W, Kim JS. THQ-Xanthene: An Emerging Strategy to Create Next-Generation NIR-I/II Fluorophores. ADVANCED SCIENCE (WEINHEIM, BADEN-WURTTEMBERG, GERMANY) 2023; 10:e2301177. [PMID: 37114796 PMCID: PMC10288261 DOI: 10.1002/advs.202301177] [Citation(s) in RCA: 10] [Impact Index Per Article: 10.0] [Reference Citation Analysis] [Abstract] [Key Words] [MESH Headings] [Grants] [Track Full Text] [Subscribe] [Scholar Register] [Received: 02/20/2023] [Revised: 04/13/2023] [Indexed: 06/19/2023]
Abstract
Near-infrared fluorescence imaging is vital for exploring the biological world. The short emissions (<650 nm) and small Stokes shifts (<30 nm) of current xanthene dyes obstruct their biological applications since a long time. Recently, a potent and universal THQ structural modification technique that shifts emission to the NIR-I/II range and enables a substantial Stokes shift (>100 nm) for THQ-modified xanthene dyes is established. Thus, a timely discussion of THQ-xanthene and its applications is extensive. Hence, the advent, working principles, development trajectory, and biological applications of THQ-xanthene dyes, especially in the fields of fluorescence probe-based sensing and imaging, cancer theranostics, and super-resolution imaging, are introduced. It is envisioned that the THQ modification tactic is a simple yet exceptional approach to upgrade the performance of conventional xanthene dyes. THQ-xanthene will advance the strides of xanthene-based potentials in early fluorescent diagnosis of diseases, cancer theranostics, and imaging-guided surgery.
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Affiliation(s)
- Zhiqiang Mao
- College of Health Science and EngineeringCollege of Chemistry and Chemical EngineeringHubei UniversityWuhan430062China
- Department of ChemistryKorea UniversitySeoul02841South Korea
| | - Hyeonji Rha
- Department of ChemistryKorea UniversitySeoul02841South Korea
| | - Jungryun Kim
- Department of ChemistryKorea UniversitySeoul02841South Korea
| | - Xinru You
- Center for Nanomedicine and Department of AnesthesiologyBrigham and Women's HospitalHarvard Medical SchoolBostonMA02115USA
| | - Fan Zhang
- College of Health Science and EngineeringCollege of Chemistry and Chemical EngineeringHubei UniversityWuhan430062China
| | - Wei Tao
- Center for Nanomedicine and Department of AnesthesiologyBrigham and Women's HospitalHarvard Medical SchoolBostonMA02115USA
| | - Jong Seung Kim
- Department of ChemistryKorea UniversitySeoul02841South Korea
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5
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Xanthene dyes for cancer imaging and treatment: A material odyssey. Coord Chem Rev 2023. [DOI: 10.1016/j.ccr.2022.214841] [Citation(s) in RCA: 0] [Impact Index Per Article: 0] [Reference Citation Analysis] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Indexed: 11/05/2022]
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6
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Li Z, Hou JT, Wang S, Zhu L, He X, Shen J. Recent advances of luminescent sensors for iron and copper: Platforms, mechanisms, and bio-applications. Coord Chem Rev 2022. [DOI: 10.1016/j.ccr.2022.214695] [Citation(s) in RCA: 2] [Impact Index Per Article: 1.0] [Reference Citation Analysis] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Indexed: 02/09/2023]
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7
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Green O, Finkelstein P, Rivero-Crespo MA, Lutz MDR, Bogdos MK, Burger M, Leroux JC, Morandi B. Activity-Based Approach for Selective Molecular CO 2 Sensing. J Am Chem Soc 2022; 144:8717-8724. [PMID: 35503368 DOI: 10.1021/jacs.2c02361] [Citation(s) in RCA: 1] [Impact Index Per Article: 0.5] [Reference Citation Analysis] [Abstract] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Indexed: 12/22/2022]
Abstract
Carbon dioxide (CO2) impacts every aspect of life, and numerous sensing technologies have been established to detect and monitor this ubiquitous molecule. However, its selective sensing at the molecular level remains an unmet challenge, despite the tremendous potential of such an approach for understanding this molecule's role in complex environments. In this work, we introduce a unique class of selective fluorescent carbon dioxide molecular sensors (CarboSen) that addresses these existing challenges through an activity-based approach. Besides the design, synthesis, and evaluation of these small molecules as CO2 sensors, we demonstrate their utility by tailoring their reactivity and optical properties, allowing their use in a broad spectrum of multidisciplinary applications, including atmospheric sensing, chemical reaction monitoring, enzymology, and live-cell imaging. Collectively, these results showcase the potential of CarboSen sensors as broadly applicable tools to monitor and visualize carbon dioxide across multiple disciplines.
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Affiliation(s)
- Ori Green
- Laboratory of Organic Chemistry, Department of Chemistry and Applied Biosciences, ETH Zürich, Vladimir-Prelog-Weg 3, HCI, Zürich 8093, Switzerland
| | - Patrick Finkelstein
- Laboratory of Organic Chemistry, Department of Chemistry and Applied Biosciences, ETH Zürich, Vladimir-Prelog-Weg 3, HCI, Zürich 8093, Switzerland
| | - Miguel A Rivero-Crespo
- Laboratory of Organic Chemistry, Department of Chemistry and Applied Biosciences, ETH Zürich, Vladimir-Prelog-Weg 3, HCI, Zürich 8093, Switzerland
| | - Marius D R Lutz
- Laboratory of Organic Chemistry, Department of Chemistry and Applied Biosciences, ETH Zürich, Vladimir-Prelog-Weg 3, HCI, Zürich 8093, Switzerland
| | - Michael K Bogdos
- Laboratory of Organic Chemistry, Department of Chemistry and Applied Biosciences, ETH Zürich, Vladimir-Prelog-Weg 3, HCI, Zürich 8093, Switzerland
| | - Michael Burger
- Institute of Pharmaceutical Sciences, Department of Chemistry and Applied Biosciences, ETH Zürich, Vladimir-Prelog-Weg 3, HCI, Zürich 8093, Switzerland
| | - Jean-Christophe Leroux
- Institute of Pharmaceutical Sciences, Department of Chemistry and Applied Biosciences, ETH Zürich, Vladimir-Prelog-Weg 3, HCI, Zürich 8093, Switzerland
| | - Bill Morandi
- Laboratory of Organic Chemistry, Department of Chemistry and Applied Biosciences, ETH Zürich, Vladimir-Prelog-Weg 3, HCI, Zürich 8093, Switzerland
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8
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Cepeda C, Denisov SA, Boturyn D, McClenaghan ND, Sénèque O. Ratiometric Luminescence Detection of Copper(I) by a Resonant System Comprising Two Antenna/Lanthanide Pairs. Inorg Chem 2021; 60:17426-17434. [PMID: 34788035 DOI: 10.1021/acs.inorgchem.1c02985] [Citation(s) in RCA: 2] [Impact Index Per Article: 0.7] [Reference Citation Analysis] [Abstract] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Indexed: 12/25/2022]
Abstract
Selective and sensitive detection of Cu(I) is an ongoing challenge due to its important role in biological systems, for example. Herein, we describe a photoluminescent molecular chemosensor integrating two lanthanide ions (Tb3+ and Eu3+) and respective tryptophan and naphthalene antennas onto a polypeptide backbone. The latter was structurally inspired from copper-regulating biomacromolecules in Gram-negative bacteria and was found to bind Cu+ effectively under pseudobiological conditions (log KCu+ = 9.7 ± 0.2). Ion regulated modulation of lanthanide luminescence in terms of intensity and long, millisecond lifetime offers perspectives in terms of ratiometric and time-gated detection of Cu+. The role of the bound ion in determining the photophysical properties is discussed with the aid of additional model compounds.
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Affiliation(s)
- Céline Cepeda
- Univ. Grenoble Alpes, CNRS, CEA, IRIG, LCBM (UMR 5249), 38000 Grenoble, France
| | | | - Didier Boturyn
- Univ. Grenoble Alpes, CNRS, DCM (UMR 5250), 38000 Grenoble, France
| | | | - Olivier Sénèque
- Univ. Grenoble Alpes, CNRS, CEA, IRIG, LCBM (UMR 5249), 38000 Grenoble, France
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9
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Isaac M, Denisov SA, McClenaghan ND, Sénèque O. Bioinspired Luminescent Europium-Based Probe Capable of Discrimination between Ag + and Cu . Inorg Chem 2021; 60:10791-10798. [PMID: 34236828 DOI: 10.1021/acs.inorgchem.1c01486] [Citation(s) in RCA: 2] [Impact Index Per Article: 0.7] [Reference Citation Analysis] [Abstract] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Indexed: 12/30/2022]
Abstract
Due to their similar coordination properties, discrimination of Cu+ and Ag+ by water-soluble luminescent probes is challenging. We have synthesized LCC4Eu, an 18 amino acid cyclic peptide bearing a europium complex, which is able to bind one Cu+ or Ag+ ion by the side chains of two methionines, a histidine and a 3-(1-naphthyl)-l-alanine. In this system, the naphthyl moiety establishes a cation-π interaction with these cations. It also acts as an antenna for the sensitization of Eu3+ luminescence. Interestingly, when excited at 280 nm, LCC4Eu behaves as a turn-on probe for Ag+ (+150% Eu emission) and as a turn-off probe for Cu+ (-50% Eu3+ emission). Shifting the excitation wavelength to 305 nm makes the probe responsive to Ag+ (+380% Eu3+ emission) but not to Cu+ or other physiological cations. Thus, LCC4Eu is uniquely capable of discriminating Ag+ from Cu+. A detailed spectroscopic characterization based on steady-state and time-resolved measurements clearly demonstrates that Eu3+ sensitization relies on electronic energy transfer from the naphthalene triplet state to the Eu3+ excited states and that the cation-π interaction lowers the energy of this triplet state by 700 and 2400 cm-1 for Ag+ and Cu+, respectively. Spectroscopic data point to a modulation of the efficiency of the electronic energy transfer caused by the differential red shift of the naphthalene triplet, deciphering the differential luminescence response of LCC4Eu toward Ag+ and Cu+.
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Affiliation(s)
- Manon Isaac
- Université Grenoble Alpes, CNRS, CEA, IRIG, LCBM (UMR 5249), 38000 Grenoble, France
| | - Sergey A Denisov
- Université Bordeaux, CNRS, ISM (UMR 5255), 33405 Talence, France
| | | | - Olivier Sénèque
- Université Grenoble Alpes, CNRS, CEA, IRIG, LCBM (UMR 5249), 38000 Grenoble, France
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10
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Ogasawara H, Tanaka Y, Taki M, Yamaguchi S. Late-stage functionalisation of alkyne-modified phospha-xanthene dyes: lysosomal imaging using an off-on-off type of pH probe. Chem Sci 2021; 12:7902-7907. [PMID: 34168843 PMCID: PMC8188471 DOI: 10.1039/d1sc01705e] [Citation(s) in RCA: 20] [Impact Index Per Article: 6.7] [Reference Citation Analysis] [Abstract] [Grants] [Track Full Text] [Download PDF] [Figures] [Journal Information] [Subscribe] [Scholar Register] [Received: 03/25/2021] [Accepted: 04/30/2021] [Indexed: 12/16/2022] Open
Abstract
Near-infrared (NIR) fluorescent molecules are of great importance for the visualisation of biological processes. Among the most promising dye scaffolds for this purpose are P[double bond, length as m-dash]O-substituted phospha-xanthene (POX) dyes, which show NIR emission with high photostability. Their practical utility for in vitro and in vivo imaging has recently been demonstrated. Although classical modification methods have been used to produce POX-based fluorescent probes, it is still a challenge to introduce additional functional groups to control the localisation of the probe in cells. Herein, we report on the development of POXs that bear a 4-ethynylphenyl group on the phosphorus atom. These dyes can subsequently be functionalised with azide-tagged biomolecules via a late-stage Cu-catalysed azide/alkyne cycloaddition (CuAAC) reaction, thus achieving target-selective labelling. To demonstrate the practical utility of the functionalised POXs, we designed a sophisticated NIR probe that exhibits a bell-shaped off-on-off pH-response and is able to assess the degree of endosomal maturation.
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Affiliation(s)
- Hiroaki Ogasawara
- Department of Chemistry, Graduate School of Science, Integrated Research Consortium on Chemical Sciences (IRCCS), Nagoya University Furo, Chikusa Nagoya 464-8602 Japan
| | - Yoshiki Tanaka
- Department of Chemistry, Graduate School of Science, Integrated Research Consortium on Chemical Sciences (IRCCS), Nagoya University Furo, Chikusa Nagoya 464-8602 Japan
| | - Masayasu Taki
- Institute of Transformative Bio-Molecules (WPI-ITbM), Nagoya University Furo, Chikusa Nagoya 464-8601 Japan
| | - Shigehiro Yamaguchi
- Department of Chemistry, Graduate School of Science, Integrated Research Consortium on Chemical Sciences (IRCCS), Nagoya University Furo, Chikusa Nagoya 464-8602 Japan
- Institute of Transformative Bio-Molecules (WPI-ITbM), Nagoya University Furo, Chikusa Nagoya 464-8601 Japan
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11
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Peng W, Athukorale S, Hu J, Cui X, Zhang D. Kinetic spectroscopic quantification using two-step chromogenic and fluorogenic reactions: From theoretical modeling to experimental quantification of biomarkers in practical samples. Anal Chim Acta 2021; 1153:338293. [PMID: 33714449 DOI: 10.1016/j.aca.2021.338293] [Citation(s) in RCA: 0] [Impact Index Per Article: 0] [Reference Citation Analysis] [Abstract] [Key Words] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Received: 12/11/2020] [Revised: 01/20/2021] [Accepted: 02/01/2021] [Indexed: 11/27/2022]
Abstract
Kinetic chromogenic (CG) and fluorogenic (FG) quantification deduces analyte concentration based on the reaction rate between the CG/FG probe and its targeted molecule. Little progress has been made in the past half century in either the theory or the applications of the kinetic spectroscopic quantification methods. Current kinetic CG/FG quantification is limited only to a subset of CG/FG reactions that can be approximated as the single-step process, and more problematically, to research samples with no matrix interferences. Reported herein is a kinetic quantification model established for multistep CG/FG reactions and a proof-of-concept demonstration of direct kinetic FG quantification of biomarkers in practical samples. The kinetic spectral intensity of the CG/FG reactions with two rate-limiting steps comprises three temporal regions: an accelerating period where rate of signal change is increasingly rapid, a linear region where the rate of signal change is approximately constant, and a deceleration region where the rate of signal increase becomes progressively small. Kinetic quantification is performed through simple linear-curve-fitting of the kinetic signal in its linear time-course region. The theoretical model is validated with the dual CG/FG 2-thiobarbituric acid (TBA) and malondialdehyde (MDA) reaction. Proof-of-concept kinetic spectroscopic quantification of analytes in practical samples is demonstrated with the FG quantification of MDA in canned chicken. The only sample preparation is bench-top centrifugation followed by two sequential syringe filtrations. The total kinetic FG assay time is less than 10 min, more than 10 times more efficient than the current equilibrium-based MDA assay. The theoretical model and the measurement design strategies offered by this work should help transform the current kinetic spectroscopic quantification from a niche research tool to an indispensable technique for time-sensitive applications.
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Affiliation(s)
- Weiyu Peng
- Department of Chemistry, Mississippi State University, Mississippi State, MS, 39762, United States
| | - Sumudu Athukorale
- Department of Chemistry, Mississippi State University, Mississippi State, MS, 39762, United States
| | - Juan Hu
- Department of Mathematical Sciences, DePaul University, Chicago, IL, 60604, United States
| | - Xin Cui
- Department of Chemistry, Mississippi State University, Mississippi State, MS, 39762, United States
| | - Dongmao Zhang
- Department of Chemistry, Mississippi State University, Mississippi State, MS, 39762, United States.
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12
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G. Keller S, Kamiya M, Urano Y. Recent Progress in Small Spirocyclic, Xanthene-Based Fluorescent Probes. Molecules 2020; 25:E5964. [PMID: 33339370 PMCID: PMC7766215 DOI: 10.3390/molecules25245964] [Citation(s) in RCA: 20] [Impact Index Per Article: 5.0] [Reference Citation Analysis] [Abstract] [Key Words] [MESH Headings] [Grants] [Track Full Text] [Download PDF] [Figures] [Journal Information] [Subscribe] [Scholar Register] [Received: 11/04/2020] [Revised: 12/14/2020] [Accepted: 12/14/2020] [Indexed: 12/13/2022] Open
Abstract
The use of fluorescent probes in a multitude of applications is still an expanding field. This review covers the recent progress made in small molecular, spirocyclic xanthene-based probes containing different heteroatoms (e.g., oxygen, silicon, carbon) in position 10'. After a short introduction, we will focus on applications like the interaction of probes with enzymes and targeted labeling of organelles and proteins, detection of small molecules, as well as their use in therapeutics or diagnostics and super-resolution microscopy. Furthermore, the last part will summarize recent advances in the synthesis and understanding of their structure-behavior relationship including novel computational approaches.
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Affiliation(s)
- Sascha G. Keller
- Graduate School of Medicine, The University of Tokyo, 7-3-1 Hongo, Bunkyo-ku, Tokyo 113-0033, Japan; (S.G.K.); (M.K.)
| | - Mako Kamiya
- Graduate School of Medicine, The University of Tokyo, 7-3-1 Hongo, Bunkyo-ku, Tokyo 113-0033, Japan; (S.G.K.); (M.K.)
| | - Yasuteru Urano
- Graduate School of Medicine, The University of Tokyo, 7-3-1 Hongo, Bunkyo-ku, Tokyo 113-0033, Japan; (S.G.K.); (M.K.)
- Graduate School of Pharmaceutical Sciences, The University of Tokyo, 7-3-1 Hongo, Bunkyo-ku, Tokyo 113-0033, Japan
- AMED-CREST, Japan Agency for Medical Research and Development, 1-7-1 Otemachi, Chiyoda-ku, Tokyo 100-0004, Japan
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13
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Ding Z, Wang C, Fan M, Zhang M, Zhou Y, Cui X, Zhang D, Wang T. Far-red imaging of β-galactosidase through a phospha-fluorescein. Chem Commun (Camb) 2020; 56:13579-13582. [PMID: 33052367 DOI: 10.1039/d0cc05529h] [Citation(s) in RCA: 8] [Impact Index Per Article: 2.0] [Reference Citation Analysis] [Abstract] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Indexed: 11/21/2022]
Abstract
The introduction of phosphine oxide into a fluorescein scaffold has yielded phospha-fluorescein with bathochromically shifted spectra, reliable photostability and solubility. Moreover, ratiometric and turn-on fluorescence in the decaging process has ensured that the phospha-fluorescein is a unique scaffold for fluorescence bioimaging. Probe DiMe-PF-Gal without further structural decoration was designed for accurately monitoring β-galactosidase in vivo.
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Affiliation(s)
- Zichao Ding
- College of Pharmacy, Second Military Medical University, Shanghai, 200433, P. R. China.
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14
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Chen Y, Zhang S, Huang Y, Lv L, Dai H, Lin Y. A bio-bar-code photothermal probe triggered multi-signal readout sensing system for nontoxic detection of mycotoxins. Biosens Bioelectron 2020; 167:112501. [PMID: 32818747 DOI: 10.1016/j.bios.2020.112501] [Citation(s) in RCA: 9] [Impact Index Per Article: 2.3] [Reference Citation Analysis] [Abstract] [Key Words] [MESH Headings] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Received: 03/09/2020] [Revised: 07/02/2020] [Accepted: 08/05/2020] [Indexed: 12/17/2022]
Abstract
Herein, a photothermal triggered multi-signal readout (MSR) system was innovatively established with great convenience for low-cost and sensitive point-of-care testing (POCT). In this sensing system, an intelligent multi-signal readout interface (MSRI) with multidimensional response-ability to thermal stimulus was developed and utilized as a sensing element. A bio-bar-code photothermal probe peptides@H2N-HCNTs acted as a target associated photothermal agent anchored on MSRI via competitive reaction. The multi-signal assay of target was realized under the driven of 808 nm laser, photo-to-thermal conversion effect of photothermal probe caused dramatically thermal energy increase on MSRI. As a result, the competitive recognition events were translated into several detectable signals on MSRI, including a local temperature elevation, a visual color change from blue to green as well as weight loss on MSRI, all of these signals were proportional to the target concentration. This assay has been successfully applied in field work for detecting zearalenone (ZEN), a common mycotoxin in grain food, with linear ranger from 10-7 ng/mL to 10-1 ng/mL and detection limits of 1.06 × 10-7 ng/mL. Combination of the different signal principles was expected to result in more reliable and precise results. Accordingly, this creatively designed MSR-system not only provided a platform for sensitive monitor of mycotoxin but also offered new method for reliable and affordable personal assays in daily life and low-resource setting.
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Affiliation(s)
- Yanjie Chen
- College of Chemistry and Materials, Fujian Normal University, Fuzhou, 350108, PR China
| | - Shupei Zhang
- College of Chemical and Material Engineering, Quzhou University, Quzhou, Zhejiang, 32400, China
| | - Yitian Huang
- College of Chemistry and Materials, Fujian Normal University, Fuzhou, 350108, PR China
| | - Liang Lv
- College of Chemical and Material Engineering, Quzhou University, Quzhou, Zhejiang, 32400, China.
| | - Hong Dai
- College of Chemistry and Materials, Fujian Normal University, Fuzhou, 350108, PR China.
| | - Yanyu Lin
- College of Chemistry and Materials, Fujian Normal University, Fuzhou, 350108, PR China
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15
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Lee S, Chung CYS, Liu P, Craciun L, Nishikawa Y, Bruemmer KJ, Hamachi I, Saijo K, Miller EW, Chang CJ. Activity-Based Sensing with a Metal-Directed Acyl Imidazole Strategy Reveals Cell Type-Dependent Pools of Labile Brain Copper. J Am Chem Soc 2020; 142:14993-15003. [PMID: 32815370 PMCID: PMC7877313 DOI: 10.1021/jacs.0c05727] [Citation(s) in RCA: 42] [Impact Index Per Article: 10.5] [Reference Citation Analysis] [Abstract] [MESH Headings] [Grants] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Indexed: 12/14/2022]
Abstract
Copper is a required nutrient for life and particularly important to the brain and central nervous system. Indeed, copper redox activity is essential to maintaining normal physiological responses spanning neural signaling to metabolism, but at the same time copper misregulation is associated with inflammation and neurodegeneration. As such, chemical probes that can track dynamic changes in copper with spatial resolution, especially in loosely bound, labile forms, are valuable tools to identify and characterize its contributions to healthy and disease states. In this report, we present an activity-based sensing (ABS) strategy for copper detection in live cells that preserves spatial information by a copper-dependent bioconjugation reaction. Specifically, we designed copper-directed acyl imidazole dyes that operate through copper-mediated activation of acyl imidazole electrophiles for subsequent labeling of proximal proteins at sites of elevated labile copper to provide a permanent stain that resists washing and fixation. To showcase the utility of this new ABS platform, we sought to characterize labile copper pools in the three main cell types in the brain: neurons, astrocytes, and microglia. Exposure of each of these cell types to physiologically relevant stimuli shows distinct changes in labile copper pools. Neurons display translocation of labile copper from somatic cell bodies to peripheral processes upon activation, whereas astrocytes and microglia exhibit global decreases and increases in intracellular labile copper pools, respectively, after exposure to inflammatory stimuli. This work provides foundational information on cell type-dependent homeostasis of copper, an essential metal in the brain, as well as a starting point for the design of new activity-based probes for metals and other dynamic signaling and stress analytes in biology.
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Affiliation(s)
| | | | | | | | - Yuki Nishikawa
- Department of Synthetic Chemistry and Biological Chemistry, Graduate School of Engineering, Kyoto University, Katsura, Nishikyo-ku, Kyoto 615-8510, Japan
- ERATO Innovative Molecular Technology for Neuroscience Project, Japan Science and Technology Agency (JST), Kyoto 615-8530, Japan
| | | | - Itaru Hamachi
- Department of Synthetic Chemistry and Biological Chemistry, Graduate School of Engineering, Kyoto University, Katsura, Nishikyo-ku, Kyoto 615-8510, Japan
- ERATO Innovative Molecular Technology for Neuroscience Project, Japan Science and Technology Agency (JST), Kyoto 615-8530, Japan
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16
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Jun JV, Chenoweth DM, Petersson EJ. Rational design of small molecule fluorescent probes for biological applications. Org Biomol Chem 2020; 18:5747-5763. [PMID: 32691820 PMCID: PMC7453994 DOI: 10.1039/d0ob01131b] [Citation(s) in RCA: 110] [Impact Index Per Article: 27.5] [Reference Citation Analysis] [Abstract] [MESH Headings] [Grants] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Indexed: 12/20/2022]
Abstract
Fluorescent small molecules are powerful tools for visualizing biological events, embodying an essential facet of chemical biology. Since the discovery of the first organic fluorophore, quinine, in 1845, both synthetic and theoretical efforts have endeavored to "modulate" fluorescent compounds. An advantage of synthetic dyes is the ability to employ modern organic chemistry strategies to tailor chemical structures and thereby rationally tune photophysical properties and functionality of the fluorophore. This review explores general factors affecting fluorophore excitation and emission spectra, molar absorption, Stokes shift, and quantum efficiency; and provides guidelines for chemist to create novel probes. Structure-property relationships concerning the substituents are discussed in detail with examples for several dye families. We also present a survey of functional probes based on PeT, FRET, and environmental or photo-sensitivity, focusing on representative recent work in each category. We believe that a full understanding of dyes with diverse chemical moieties enables the rational design of probes for the precise interrogation of biochemical and biological phenomena.
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Affiliation(s)
- Joomyung V Jun
- Department of Chemistry, University of Pennsylvania, 231 South 34th Street, Philadelphia, PA 19104, USA. and Department of Chemistry, Massachusetts Institute of Technology, 77 Massachusetts Avenue, Cambridge, MA 02139, USA
| | - David M Chenoweth
- Department of Chemistry, University of Pennsylvania, 231 South 34th Street, Philadelphia, PA 19104, USA.
| | - E James Petersson
- Department of Chemistry, University of Pennsylvania, 231 South 34th Street, Philadelphia, PA 19104, USA. and Department of Biochemistry and Molecular Biophysics, Perelman School of Medicine, University of Pennsylvania, 3700 Hamilton Walk, Philadelphia, PA 19104, USA
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17
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Xiong M, Yang Z, Lake RJ, Li J, Hong S, Fan H, Zhang XB, Lu Y. DNAzyme-Mediated Genetically Encoded Sensors for Ratiometric Imaging of Metal Ions in Living Cells. ANGEWANDTE CHEMIE (WEINHEIM AN DER BERGSTRASSE, GERMANY) 2020; 132:1907-1912. [PMID: 36312441 PMCID: PMC9615436 DOI: 10.1002/ange.201912514] [Citation(s) in RCA: 9] [Impact Index Per Article: 2.3] [Reference Citation Analysis] [Abstract] [Key Words] [Grants] [Track Full Text] [Subscribe] [Scholar Register] [Received: 09/30/2019] [Indexed: 09/07/2024]
Abstract
Genetically encoded fluorescent proteins (FPs) have been used for metal ion detection. However, their applications are restricted to a limited number of metal ions owing to the lack of available metal-binding proteins or peptides that can be fused to FPs and the difficulty in transforming the binding of metal ions into a change of fluorescent signal. We report herein the use of Mg2+-specific 10-23 or Zn2+-specific 8-17 RNA-cleaving DNAzymes to regulate the expression of FPs as a new class of ratiometric fluorescent sensors for metal ions. Specifically, we demonstrate the use of DNAzymes to suppress the expression of Clover2, a variant of the green FP (GFP), by cleaving the mRNA of Clover2, while the expression of Ruby2, a mutant of the red FP (RFP), is not affected. The Mg2+ or Zn2+ in HeLa cells can be detected using both confocal imaging and flow cytometry. Since a wide variety of metal-specific DNAzymes can be obtained, this method can likely be applied to imaging many other metal ions, expanding the range of the current genetically encoded fluorescent protein-based sensors.
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Affiliation(s)
- Mengyi Xiong
- Molecular Science and Biomedicine Laboratory (MBL), State Key Laboratory of Chemo/Biosensing and Chemometrics, College of Chemistry and Chemical Engineering, Collaborative Innovation Center for Chemistry and Molecular Medicine, Hunan University Changsha 410082 (P. R. China)
- Department of Chemistry, University of Illinois at Urbana-Champaign, Urbana, IL 61801 (USA)
| | - Zhenglin Yang
- Department of Biochemistry, University of Illinois at Urbana-Champaign, Urbana, IL 61801 (USA)
| | - Ryan J Lake
- Department of Chemistry, University of Illinois at Urbana-Champaign, Urbana, IL 61801 (USA)
| | - Junjie Li
- Department of Chemistry, University of Illinois at Urbana-Champaign, Urbana, IL 61801 (USA)
| | - Shanni Hong
- Department of Chemistry, University of Illinois at Urbana-Champaign, Urbana, IL 61801 (USA)
| | - Huanhuan Fan
- Molecular Science and Biomedicine Laboratory (MBL), State Key Laboratory of Chemo/Biosensing and Chemometrics, College of Chemistry and Chemical Engineering, Collaborative Innovation Center for Chemistry and Molecular Medicine, Hunan University Changsha 410082 (P. R. China)
- Department of Chemistry, University of Illinois at Urbana-Champaign, Urbana, IL 61801 (USA)
| | - Xiao-Bing Zhang
- Molecular Science and Biomedicine Laboratory (MBL), State Key Laboratory of Chemo/Biosensing and Chemometrics, College of Chemistry and Chemical Engineering, Collaborative Innovation Center for Chemistry and Molecular Medicine, Hunan University Changsha 410082 (P. R. China)
| | - Yi Lu
- Department of Chemistry, University of Illinois at Urbana-Champaign, Urbana, IL 61801 (USA)
- Department of Biochemistry, University of Illinois at Urbana-Champaign, Urbana, IL 61801 (USA)
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18
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Lv X, Gao C, Han T, Shi H, Guo W. Improving the quantum yields of fluorophores by inhibiting twisted intramolecular charge transfer using electron-withdrawing group-functionalized piperidine auxochromes. Chem Commun (Camb) 2019; 56:715-718. [PMID: 31848530 DOI: 10.1039/c9cc09138f] [Citation(s) in RCA: 47] [Impact Index Per Article: 9.4] [Reference Citation Analysis] [Abstract] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Indexed: 11/21/2022]
Abstract
Herein, we present that the negative inductive effect exerted by electron-withdrawing groups, such as sulfone groups, can obviously improve the ionization potential of amino auxochromes, thereby effectively inhibiting twisted intramolecular charge transfer (TICT) and markedly improving the quantum yields of several families of fluorophores in aqueous solution.
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Affiliation(s)
- Xin Lv
- School of Chemistry and Chemical Engineering, Shanxi University, Taiyuan 030006, China.
| | - Chunmei Gao
- School of Chemistry and Chemical Engineering, Shanxi University, Taiyuan 030006, China.
| | - Taihe Han
- School of Chemistry and Chemical Engineering, Shanxi University, Taiyuan 030006, China.
| | - Hu Shi
- School of Chemistry and Chemical Engineering, Shanxi University, Taiyuan 030006, China.
| | - Wei Guo
- School of Chemistry and Chemical Engineering, Shanxi University, Taiyuan 030006, China.
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19
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Xiong M, Yang Z, Lake RJ, Li J, Hong S, Fan H, Zhang XB, Lu Y. DNAzyme-Mediated Genetically Encoded Sensors for Ratiometric Imaging of Metal Ions in Living Cells. Angew Chem Int Ed Engl 2019; 59:1891-1896. [PMID: 31746514 DOI: 10.1002/anie.201912514] [Citation(s) in RCA: 49] [Impact Index Per Article: 9.8] [Reference Citation Analysis] [Abstract] [Key Words] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Received: 09/30/2019] [Indexed: 12/21/2022]
Abstract
Genetically encoded fluorescent proteins (FPs) have been used for metal ion detection. However, their applications are restricted to a limited number of metal ions owing to the lack of available metal-binding proteins or peptides that can be fused to FPs and the difficulty in transforming the binding of metal ions into a change of fluorescent signal. We report herein the use of Mg2+ -specific 10-23 or Zn2+ -specific 8-17 RNA-cleaving DNAzymes to regulate the expression of FPs as a new class of ratiometric fluorescent sensors for metal ions. Specifically, we demonstrate the use of DNAzymes to suppress the expression of Clover2, a variant of the green FP (GFP), by cleaving the mRNA of Clover2, while the expression of Ruby2, a mutant of the red FP (RFP), is not affected. The Mg2+ or Zn2+ in HeLa cells can be detected using both confocal imaging and flow cytometry. Since a wide variety of metal-specific DNAzymes can be obtained, this method can likely be applied to imaging many other metal ions, expanding the range of the current genetically encoded fluorescent protein-based sensors.
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Affiliation(s)
- Mengyi Xiong
- Molecular Science and Biomedicine Laboratory (MBL), State Key Laboratory of Chemo/Biosensing and Chemometrics, College of Chemistry and Chemical Engineering, Collaborative Innovation Center for Chemistry and Molecular Medicine, Hunan University, Changsha, 410082, P. R. China.,Department of Chemistry, University of Illinois at Urbana-Champaign, Urbana, IL, 61801, USA
| | - Zhenglin Yang
- Department of Biochemistry, University of Illinois at Urbana-Champaign, Urbana, IL, 61801, USA
| | - Ryan J Lake
- Department of Chemistry, University of Illinois at Urbana-Champaign, Urbana, IL, 61801, USA
| | - Junjie Li
- Department of Chemistry, University of Illinois at Urbana-Champaign, Urbana, IL, 61801, USA
| | - Shanni Hong
- Department of Chemistry, University of Illinois at Urbana-Champaign, Urbana, IL, 61801, USA
| | - Huanhuan Fan
- Molecular Science and Biomedicine Laboratory (MBL), State Key Laboratory of Chemo/Biosensing and Chemometrics, College of Chemistry and Chemical Engineering, Collaborative Innovation Center for Chemistry and Molecular Medicine, Hunan University, Changsha, 410082, P. R. China.,Department of Chemistry, University of Illinois at Urbana-Champaign, Urbana, IL, 61801, USA
| | - Xiao-Bing Zhang
- Molecular Science and Biomedicine Laboratory (MBL), State Key Laboratory of Chemo/Biosensing and Chemometrics, College of Chemistry and Chemical Engineering, Collaborative Innovation Center for Chemistry and Molecular Medicine, Hunan University, Changsha, 410082, P. R. China
| | - Yi Lu
- Department of Chemistry, University of Illinois at Urbana-Champaign, Urbana, IL, 61801, USA.,Department of Biochemistry, University of Illinois at Urbana-Champaign, Urbana, IL, 61801, USA
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20
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Poronik YM, Vygranenko KV, Gryko D, Gryko DT. Rhodols - synthesis, photophysical properties and applications as fluorescent probes. Chem Soc Rev 2019; 48:5242-5265. [PMID: 31549709 DOI: 10.1039/c9cs00166b] [Citation(s) in RCA: 52] [Impact Index Per Article: 10.4] [Reference Citation Analysis] [Abstract] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Indexed: 12/20/2022]
Abstract
The formal replacement of one dialkylamino group in rhodamines with a hydroxyl group transforms them into rhodols. This apparently minor difference is not as small as one may think; rhodamines belong to the cyanine family whereas rhodols belong to merocyanines. Discovered in the late 19th century, rhodols have only very recently begun to gain momentum in the field of advanced fluorescence imaging. This is in part due to the increased understanding of their photophysical properties, and new methods of synthesis. Rationalization of how the nature and arrangement of polar substituents around the core affect the photophysical properties of rhodols is now possible. The emergence of so-called π-expanded and heteroatom-modified rhodols has also allowed their fluorescence to be bathochromically shifted into regions applicable for biological imaging. This review serves to outline applicable synthetic strategies for the synthesis of rhodols, and to highlight important structure-property relationships. In the first part of this Review, various synthetic methods leading to rhodols are presented, followed by structural considerations and an overview of photophysical properties. The second part of this review is entirely devoted to the applications of rhodols as fluorescent reporters in biological imaging.
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Affiliation(s)
- Yevgen M Poronik
- Institute of Organic Chemistry, Polish Academy of Sciences, Kasprzaka 44/52, 01-224 Warsaw, Poland.
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21
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Benson S, Fernandez A, Barth ND, de Moliner F, Horrocks MH, Herrington CS, Abad JL, Delgado A, Kelly L, Chang Z, Feng Y, Nishiura M, Hori Y, Kikuchi K, Vendrell M. SCOTfluors: Small, Conjugatable, Orthogonal, and Tunable Fluorophores for In Vivo Imaging of Cell Metabolism. Angew Chem Int Ed Engl 2019; 58:6911-6915. [PMID: 30924239 PMCID: PMC6563150 DOI: 10.1002/anie.201900465] [Citation(s) in RCA: 83] [Impact Index Per Article: 16.6] [Reference Citation Analysis] [Abstract] [Key Words] [MESH Headings] [Grants] [Track Full Text] [Download PDF] [Figures] [Journal Information] [Subscribe] [Scholar Register] [Received: 01/12/2019] [Indexed: 12/11/2022]
Abstract
The transport and trafficking of metabolites are critical for the correct functioning of live cells. However, in situ metabolic imaging studies are hampered by the lack of fluorescent chemical structures that allow direct monitoring of small metabolites under physiological conditions with high spatial and temporal resolution. Herein, we describe SCOTfluors as novel small-sized multi-colored fluorophores for real-time tracking of essential metabolites in live cells and in vivo and for the acquisition of metabolic profiles from human cancer cells of variable origin.
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Affiliation(s)
- Sam Benson
- Centre for Inflammation ResearchThe University of EdinburghEH16 4TJEdinburghUK
| | - Antonio Fernandez
- Centre for Inflammation ResearchThe University of EdinburghEH16 4TJEdinburghUK
| | - Nicole D. Barth
- Centre for Inflammation ResearchThe University of EdinburghEH16 4TJEdinburghUK
| | - Fabio de Moliner
- Centre for Inflammation ResearchThe University of EdinburghEH16 4TJEdinburghUK
| | - Mathew H. Horrocks
- UK Dementia Research Institute and EaStCHEM School of ChemistryThe University of EdinburghEH9 3FJEdinburghUK
| | | | - Jose Luis Abad
- Research Unit on Bioactive MoleculesInstitute for Advanced Chemistry of Catalonia08034BarcelonaSpain
- University of BarcelonaFaculty of Pharmacy, Unit of Pharmaceutical Chemistry (CSIC Associated Unit)BarcelonaSpain
| | - Antonio Delgado
- Research Unit on Bioactive MoleculesInstitute for Advanced Chemistry of Catalonia08034BarcelonaSpain
- University of BarcelonaFaculty of Pharmacy, Unit of Pharmaceutical Chemistry (CSIC Associated Unit)BarcelonaSpain
| | - Lisa Kelly
- Centre for Inflammation ResearchThe University of EdinburghEH16 4TJEdinburghUK
| | - Ziyuan Chang
- Centre for Inflammation ResearchThe University of EdinburghEH16 4TJEdinburghUK
| | - Yi Feng
- Centre for Inflammation ResearchThe University of EdinburghEH16 4TJEdinburghUK
| | | | - Yuichiro Hori
- Graduate School of EngineeringOsaka UniversitySuitaJapan
| | - Kazuya Kikuchi
- Graduate School of EngineeringOsaka UniversitySuitaJapan
| | - Marc Vendrell
- Centre for Inflammation ResearchThe University of EdinburghEH16 4TJEdinburghUK
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22
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Luo Q, Bandi KR, Dong Y, Bao H, Li D, Chen Q. Synthesis and living cell imaging of a novel fluorescent sensor for selective cupric detection. SPECTROCHIMICA ACTA. PART A, MOLECULAR AND BIOMOLECULAR SPECTROSCOPY 2019; 214:146-151. [PMID: 30776715 DOI: 10.1016/j.saa.2019.02.013] [Citation(s) in RCA: 4] [Impact Index Per Article: 0.8] [Reference Citation Analysis] [Abstract] [Key Words] [MESH Headings] [Track Full Text] [Subscribe] [Scholar Register] [Received: 10/31/2018] [Revised: 01/31/2019] [Accepted: 02/09/2019] [Indexed: 06/09/2023]
Abstract
Copper is an important element indispensable for human life and health. Many copper-determining probes have been created for exploring its functional behavior in various cell types but few of them contains both fluorescent and colorimetric characters. In the present study, we developed a set of copper probes by synthesizing several novel thiophene-based Schiff bases in order to make a suitable sensor for quantifying and imaging copper in living cells. We find that the ligand FS-1 has a splendid selectivity and affinity toward Cu2+ among the common divalent metal ions. Living cell imaging show that FS-1 has a robust and repetitive fluorescence response in the presence of Cu2+ only in the cytosolic space of Hepg2 cell and not in the other cells examined. These data suggest that we have developed a new copper probe that can be used as a Cu2+ fluorescent and colorimetric sensor for in vivo and in vitro copper studies.
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Affiliation(s)
- Qianping Luo
- Key Laboratory of Innate Immune Biology of Fujian Province, Biomedical Research Center of South China, College of Life Sciences, Fujian Normal University, 1 Keji Road, Fuzhou 350117, PR China
| | - Koteswara Rao Bandi
- Key Laboratory of Coal to Ethylene Glycol and Its Related Technology, Fujian Institute of Research on the Structure of Matter, Chinese Academy of Sciences, 155 Yangqiao Road West, Fuzhou 350002, PR China
| | - Yanqiu Dong
- Key Laboratory of Innate Immune Biology of Fujian Province, Biomedical Research Center of South China, College of Life Sciences, Fujian Normal University, 1 Keji Road, Fuzhou 350117, PR China
| | - Hongli Bao
- Key Laboratory of Coal to Ethylene Glycol and Its Related Technology, Fujian Institute of Research on the Structure of Matter, Chinese Academy of Sciences, 155 Yangqiao Road West, Fuzhou 350002, PR China
| | - Daliang Li
- Key Laboratory of Innate Immune Biology of Fujian Province, Biomedical Research Center of South China, College of Life Sciences, Fujian Normal University, 1 Keji Road, Fuzhou 350117, PR China; The Public Service Platform for Industrialization Development Technology of Marine Biological Medicine and Product of State Oceanic Administration, Center of Engineering Technology Research for Microalgae Germplasm Improvement of Fujian, Southern Institute of Oceanography, Fujian Normal University, Fuzhou 350117, PR China.
| | - Qi Chen
- Key Laboratory of Innate Immune Biology of Fujian Province, Biomedical Research Center of South China, College of Life Sciences, Fujian Normal University, 1 Keji Road, Fuzhou 350117, PR China.
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23
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Benson S, Fernandez A, Barth ND, de Moliner F, Horrocks MH, Herrington CS, Abad JL, Delgado A, Kelly L, Chang Z, Feng Y, Nishiura M, Hori Y, Kikuchi K, Vendrell M. SCOTfluors: Small, Conjugatable, Orthogonal, and Tunable Fluorophores for In Vivo Imaging of Cell Metabolism. Angew Chem Int Ed Engl 2019. [DOI: 10.1002/ange.201900465] [Citation(s) in RCA: 25] [Impact Index Per Article: 5.0] [Reference Citation Analysis] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Indexed: 01/19/2023]
Affiliation(s)
- Sam Benson
- Centre for Inflammation ResearchThe University of Edinburgh EH16 4TJ Edinburgh UK
| | - Antonio Fernandez
- Centre for Inflammation ResearchThe University of Edinburgh EH16 4TJ Edinburgh UK
| | - Nicole D. Barth
- Centre for Inflammation ResearchThe University of Edinburgh EH16 4TJ Edinburgh UK
| | - Fabio de Moliner
- Centre for Inflammation ResearchThe University of Edinburgh EH16 4TJ Edinburgh UK
| | - Mathew H. Horrocks
- UK Dementia Research Institute and EaStCHEM School of ChemistryThe University of Edinburgh EH9 3FJ Edinburgh UK
| | | | - Jose Luis Abad
- Research Unit on Bioactive MoleculesInstitute for Advanced Chemistry of Catalonia 08034 Barcelona Spain
- University of BarcelonaFaculty of Pharmacy, Unit of Pharmaceutical Chemistry (CSIC Associated Unit) Barcelona Spain
| | - Antonio Delgado
- Research Unit on Bioactive MoleculesInstitute for Advanced Chemistry of Catalonia 08034 Barcelona Spain
- University of BarcelonaFaculty of Pharmacy, Unit of Pharmaceutical Chemistry (CSIC Associated Unit) Barcelona Spain
| | - Lisa Kelly
- Centre for Inflammation ResearchThe University of Edinburgh EH16 4TJ Edinburgh UK
| | - Ziyuan Chang
- Centre for Inflammation ResearchThe University of Edinburgh EH16 4TJ Edinburgh UK
| | - Yi Feng
- Centre for Inflammation ResearchThe University of Edinburgh EH16 4TJ Edinburgh UK
| | | | - Yuichiro Hori
- Graduate School of EngineeringOsaka University Suita Japan
| | - Kazuya Kikuchi
- Graduate School of EngineeringOsaka University Suita Japan
| | - Marc Vendrell
- Centre for Inflammation ResearchThe University of Edinburgh EH16 4TJ Edinburgh UK
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24
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Sharma DK, Adams ST, Liebmann KL, Choi A, Miller SC. Sulfonamides Are an Overlooked Class of Electron Donors in Luminogenic Luciferins and Fluorescent Dyes. Org Lett 2019; 21:1641-1644. [PMID: 30835125 DOI: 10.1021/acs.orglett.9b00173] [Citation(s) in RCA: 19] [Impact Index Per Article: 3.8] [Reference Citation Analysis] [Abstract] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Indexed: 01/26/2023]
Abstract
Many fluorophores, and all bright light-emitting substrates for firefly luciferase, contain hydroxyl or amine electron donors. Sulfonamides were found to be capable of serving as replacements for these canonical groups. Unlike "caged" carboxamides, sulfonamide donors enable bioluminescence, and sulfonamidyl luciferins, coumarins, rhodols, and rhodamines are fluorescent in water.
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Affiliation(s)
- Deepak K Sharma
- Department of Biochemistry and Molecular Pharmacology , University of Massachusetts Medical School , 364 Plantation Street , Worcester , Massachusetts 01605 , United States
| | - Spencer T Adams
- Department of Biochemistry and Molecular Pharmacology , University of Massachusetts Medical School , 364 Plantation Street , Worcester , Massachusetts 01605 , United States
| | - Kate L Liebmann
- Department of Biochemistry and Molecular Pharmacology , University of Massachusetts Medical School , 364 Plantation Street , Worcester , Massachusetts 01605 , United States
| | - Adam Choi
- Department of Biochemistry and Molecular Pharmacology , University of Massachusetts Medical School , 364 Plantation Street , Worcester , Massachusetts 01605 , United States
| | - Stephen C Miller
- Department of Biochemistry and Molecular Pharmacology , University of Massachusetts Medical School , 364 Plantation Street , Worcester , Massachusetts 01605 , United States
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25
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Ou P, Zhang R, Liu Z, Tian X, Han G, Liu B, Hu Z, Zhang Z. Gasotransmitter Regulation of Phosphatase Activity in Live Cells Studied by Three‐Channel Imaging Correlation. Angew Chem Int Ed Engl 2019; 58:2261-2265. [DOI: 10.1002/anie.201811391] [Citation(s) in RCA: 38] [Impact Index Per Article: 7.6] [Reference Citation Analysis] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Received: 10/03/2018] [Revised: 11/25/2018] [Indexed: 02/06/2023]
Affiliation(s)
- Pan Ou
- School of Chemistry and Chemical Engineering, andInstitute of Physical Science and Information TechnologyAnhui University Hefei Anhui 230601 China
| | - Ruilong Zhang
- School of Chemistry and Chemical Engineering, andInstitute of Physical Science and Information TechnologyAnhui University Hefei Anhui 230601 China
| | - Zhengjie Liu
- School of Chemistry and Chemical Engineering, andInstitute of Physical Science and Information TechnologyAnhui University Hefei Anhui 230601 China
| | - Xiaohe Tian
- School of Chemistry and Chemical Engineering, andInstitute of Physical Science and Information TechnologyAnhui University Hefei Anhui 230601 China
| | - Guangmei Han
- Institute of Intelligent MachinesChinese Academy of Sciences Hefei Anhui 230031 China
| | - Bianhua Liu
- Institute of Intelligent MachinesChinese Academy of Sciences Hefei Anhui 230031 China
| | - Zhangjun Hu
- Department of Physics, Chemistry and BiologyLinköping University Linköping 58183 Sweden
| | - Zhongping Zhang
- School of Chemistry and Chemical Engineering, andInstitute of Physical Science and Information TechnologyAnhui University Hefei Anhui 230601 China
- Institute of Intelligent MachinesChinese Academy of Sciences Hefei Anhui 230031 China
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26
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Ou P, Zhang R, Liu Z, Tian X, Han G, Liu B, Hu Z, Zhang Z. Gasotransmitter Regulation of Phosphatase Activity in Live Cells Studied by Three-Channel Imaging Correlation. Angew Chem Int Ed Engl 2019. [DOI: 10.1002/ange.201811391] [Citation(s) in RCA: 4] [Impact Index Per Article: 0.8] [Reference Citation Analysis] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Indexed: 11/09/2022]
Affiliation(s)
- Pan Ou
- School of Chemistry and Chemical Engineering, and; Institute of Physical Science and Information Technology; Anhui University; Hefei Anhui 230601 China
| | - Ruilong Zhang
- School of Chemistry and Chemical Engineering, and; Institute of Physical Science and Information Technology; Anhui University; Hefei Anhui 230601 China
| | - Zhengjie Liu
- School of Chemistry and Chemical Engineering, and; Institute of Physical Science and Information Technology; Anhui University; Hefei Anhui 230601 China
| | - Xiaohe Tian
- School of Chemistry and Chemical Engineering, and; Institute of Physical Science and Information Technology; Anhui University; Hefei Anhui 230601 China
| | - Guangmei Han
- Institute of Intelligent Machines; Chinese Academy of Sciences; Hefei Anhui 230031 China
| | - Bianhua Liu
- Institute of Intelligent Machines; Chinese Academy of Sciences; Hefei Anhui 230031 China
| | - Zhangjun Hu
- Department of Physics, Chemistry and Biology; Linköping University; Linköping 58183 Sweden
| | - Zhongping Zhang
- School of Chemistry and Chemical Engineering, and; Institute of Physical Science and Information Technology; Anhui University; Hefei Anhui 230601 China
- Institute of Intelligent Machines; Chinese Academy of Sciences; Hefei Anhui 230031 China
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27
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Regulska E, Hindenberg P, Romero‐Nieto C. From Phosphaphenalenes to Diphosphahexaarenes: An Overview of Linearly Fused Six‐Membered Phosphorus Heterocycles. Eur J Inorg Chem 2019. [DOI: 10.1002/ejic.201801340] [Citation(s) in RCA: 19] [Impact Index Per Article: 3.8] [Reference Citation Analysis] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Indexed: 02/05/2023]
Affiliation(s)
- Elzbieta Regulska
- Organisch‐Chemisches Institut Ruprecht‐Karls‐Universität Heidelberg Im Neuenheimer Feld 270 69120 Heidelberg Germany
| | - Philip Hindenberg
- Organisch‐Chemisches Institut Ruprecht‐Karls‐Universität Heidelberg Im Neuenheimer Feld 270 69120 Heidelberg Germany
| | - Carlos Romero‐Nieto
- Organisch‐Chemisches Institut Ruprecht‐Karls‐Universität Heidelberg Im Neuenheimer Feld 270 69120 Heidelberg Germany
- Faculty of Pharmacy University of Castilla‐La Mancha Calle Almansa 14 ‐ Edif. Bioincubadora 02008 Albacete Spain
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28
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Rakshit A, Khatua K, Shanbhag V, Comba P, Datta A. Cu 2+ selective chelators relieve copper-induced oxidative stress in vivo. Chem Sci 2018; 9:7916-7930. [PMID: 30450181 PMCID: PMC6202919 DOI: 10.1039/c8sc04041a] [Citation(s) in RCA: 46] [Impact Index Per Article: 7.7] [Reference Citation Analysis] [Abstract] [Track Full Text] [Download PDF] [Figures] [Journal Information] [Subscribe] [Scholar Register] [Received: 09/11/2018] [Accepted: 09/29/2018] [Indexed: 02/06/2023] Open
Abstract
Copper ions are essential for biological function yet are severely detrimental when present in excess. At the molecular level, copper ions catalyze the production of hydroxyl radicals that can irreversibly alter essential bio-molecules. Hence, selective copper chelators that can remove excess copper ions and alleviate oxidative stress will help assuage copper-overload diseases. However, most currently available chelators are non-specific leading to multiple undesirable side-effects. The challenge is to build chelators that can bind to copper ions with high affinity but leave the levels of essential metal ions unaltered. Here we report the design and development of redox-state selective Cu ion chelators that have 108 times higher conditional stability constants toward Cu2+ compared to both Cu+ and other biologically relevant metal ions. This unique selectivity allows the specific removal of Cu2+ ions that would be available only under pathophysiological metal overload and oxidative stress conditions and provides access to effective removal of the aberrant redox-cycling Cu ion pool without affecting the essential non-redox cycling Cu+ labile pool. We have shown that the chelators provide distinct protection against copper-induced oxidative stress in vitro and in live cells via selective Cu2+ ion chelation. Notably, the chelators afford significant reduction in Cu-induced oxidative damage in Atp7a-/- Menkes disease model cells that have endogenously high levels of Cu ions. Finally, in vivo testing of our chelators in a live zebrafish larval model demonstrate their protective properties against copper-induced oxidative stress.
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Affiliation(s)
- Ananya Rakshit
- Department of Chemical Sciences , Tata Institute of Fundamental Research , 1 Homi Bhabha Road, Colaba , Mumbai-400005 , India .
| | - Kaustav Khatua
- Department of Chemical Sciences , Tata Institute of Fundamental Research , 1 Homi Bhabha Road, Colaba , Mumbai-400005 , India .
| | - Vinit Shanbhag
- Department of Biochemistry , Christopher S. Bond Life Science Center , University of Missouri , Columbia , USA
| | - Peter Comba
- Universität Heidelberg , Anorganisch-Chemisches Institut , Interdisciplinary Center for Scientific Computing , INF 270 , D-69120 Heidelberg , Germany
| | - Ankona Datta
- Department of Chemical Sciences , Tata Institute of Fundamental Research , 1 Homi Bhabha Road, Colaba , Mumbai-400005 , India .
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