1
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Awadein M, Sparey M, Grall S, Kienberger F, Clement N, Gramse G. Nanoscale electrochemical charge transfer kinetics investigated by electrochemical scanning microwave microscopy. NANOSCALE ADVANCES 2023; 5:659-667. [PMID: 36756524 PMCID: PMC9890956 DOI: 10.1039/d2na00671e] [Citation(s) in RCA: 0] [Impact Index Per Article: 0] [Reference Citation Analysis] [Abstract] [Grants] [Track Full Text] [Download PDF] [Figures] [Subscribe] [Scholar Register] [Received: 09/30/2022] [Accepted: 11/17/2022] [Indexed: 06/18/2023]
Abstract
We show how microwave microscopy can be used to probe local charge transfer reactions with unprecedented sensitivity, visualizing surface reactions with only a few hundred molecules involved. While microwaves are too fast under classical conditions to interact and sense electrochemical processes, this is different at the nanoscale, where our heterodyne microwave sensing method allows for highly sensitive local cyclic voltammetry (LCV) and local electrochemical impedance spectroscopy (LEIS). LCV and LEIS allow for precise measurement of the localized charge transfer kinetics, as illustrated in this study for a ferrocene self-assembled monolayer immersed in an electrolyte. The theoretical analysis presented here enables a consistent mapping of the faradaic kinetics and the parasitic contributions (nonfaradaic) to be spectrally resolved and subtracted. In particular, this methodology reveals an undistorted assessment of accessible redox site density of states associated with faradaic capacitance, fractional surface coverage and electron transfer kinetics at the nanoscale. The developed methodology opens a new perspective on comprehending electrochemical reactivity at the nanoscale.
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Affiliation(s)
- Mohamed Awadein
- Keysight Labs Austria, Keysight Technologies Linz 4020 Austria
| | - Maxwell Sparey
- Keysight Labs Austria, Keysight Technologies Linz 4020 Austria
| | - Simon Grall
- LIMMS/CNRS Institute of Industrial Science, University of Tokyo Tokyo 153-8505 Japan
| | | | - Nicolas Clement
- LIMMS/CNRS Institute of Industrial Science, University of Tokyo Tokyo 153-8505 Japan
| | - Georg Gramse
- Keysight Labs Austria, Keysight Technologies Linz 4020 Austria
- Institute of Biophysics, Johannes Kepler University Linz 4020 Austria
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2
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De S, Nguyen HM, Liljeström V, Mäkinen K, Kostiainen MA, Vapaavuori J. Potato virus A particles - A versatile material for self-assembled nanopatterned surfaces. Virology 2023; 578:103-110. [PMID: 36493505 DOI: 10.1016/j.virol.2022.11.010] [Citation(s) in RCA: 2] [Impact Index Per Article: 2.0] [Reference Citation Analysis] [Abstract] [Key Words] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Received: 09/23/2022] [Revised: 11/16/2022] [Accepted: 11/22/2022] [Indexed: 11/27/2022]
Abstract
Potato virus A (PVA) is a plant-infecting RNA virus that produces flexible particles with a high aspect ratio. PVA has been investigated extensively for its infection biology, however, its potential to serve as a nanopatterning platform remains unexplored. Here, we study the liquid crystal and interfacial self-assembly behavior of PVA particles. Furthermore, we generate nanopatterned surfaces using self-assembled PVA particles through three different coating techniques: drop-casting, drop-top deposition and flow-coating. The liquid crystal phase of PVA solution visualized by polarized optical microscopy revealed a chiral nematic phase in water, while in pH 8 buffer it produced a nematic phase. This allowed us to produce thin films with either randomly or anisotropically oriented cylindrical nanopatterns using drop-top and flow-coating methods. Overall, this study explores the self-assembly process of PVA in different conditions, establishing a starting point for PVA self-assembly research and contributing a virus-assisted fabrication technique for nanopatterned surfaces.
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Affiliation(s)
- Swarnalok De
- Department of Chemistry and Materials Science, Aalto University, 00076, Espoo, Finland
| | - Hoang M Nguyen
- Department of Chemistry and Materials Science, Aalto University, 00076, Espoo, Finland
| | - Ville Liljeström
- Nanomicroscopy Center, OtaNano, Aalto University, 00076, Espoo, Finland
| | - Kristiina Mäkinen
- Department of Microbiology, University of Helsinki, 00014, Helsinki, Finland
| | - Mauri A Kostiainen
- Department of Bioproducts and Biosystems, Aalto University, 00076, Espoo, Finland.
| | - Jaana Vapaavuori
- Department of Chemistry and Materials Science, Aalto University, 00076, Espoo, Finland.
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3
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Bedendi G, De Moura Torquato LD, Webb S, Cadoux C, Kulkarni A, Sahin S, Maroni P, Milton RD, Grattieri M. Enzymatic and Microbial Electrochemistry: Approaches and Methods. ACS MEASUREMENT SCIENCE AU 2022; 2:517-541. [PMID: 36573075 PMCID: PMC9783092 DOI: 10.1021/acsmeasuresciau.2c00042] [Citation(s) in RCA: 3] [Impact Index Per Article: 1.5] [Reference Citation Analysis] [Abstract] [Key Words] [Grants] [Track Full Text] [Figures] [Subscribe] [Scholar Register] [Received: 06/22/2022] [Revised: 08/12/2022] [Accepted: 08/15/2022] [Indexed: 06/17/2023]
Abstract
The coupling of enzymes and/or intact bacteria with electrodes has been vastly investigated due to the wide range of existing applications. These span from biomedical and biosensing to energy production purposes and bioelectrosynthesis, whether for theoretical research or pure applied industrial processes. Both enzymes and bacteria offer a potential biotechnological alternative to noble/rare metal-dependent catalytic processes. However, when developing these biohybrid electrochemical systems, it is of the utmost importance to investigate how the approaches utilized to couple biocatalysts and electrodes influence the resulting bioelectrocatalytic response. Accordingly, this tutorial review starts by recalling some basic principles and applications of bioelectrochemistry, presenting the electrode and/or biocatalyst modifications that facilitate the interaction between the biotic and abiotic components of bioelectrochemical systems. Focus is then directed toward the methods used to evaluate the effectiveness of enzyme/bacteria-electrode interaction and the insights that they provide. The basic concepts of electrochemical methods widely employed in enzymatic and microbial electrochemistry, such as amperometry and voltammetry, are initially presented to later focus on various complementary methods such as spectroelectrochemistry, fluorescence spectroscopy and microscopy, and surface analytical/characterization techniques such as quartz crystal microbalance and atomic force microscopy. The tutorial review is thus aimed at students and graduate students approaching the field of enzymatic and microbial electrochemistry, while also providing a critical and up-to-date reference for senior researchers working in the field.
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Affiliation(s)
- Giada Bedendi
- Department
of Inorganic and Analytical Chemistry, Faculty of Sciences, University of Geneva, Quai Ernest-Ansermet 30, 1211 Geneva 4, Switzerland
| | | | - Sophie Webb
- Department
of Inorganic and Analytical Chemistry, Faculty of Sciences, University of Geneva, Quai Ernest-Ansermet 30, 1211 Geneva 4, Switzerland
- National
Centre of Competence in Research (NCCR) Catalysis, University of Geneva, Quai Ernest-Ansermet 30, 1211 Geneva 4, Switzerland
| | - Cécile Cadoux
- Department
of Inorganic and Analytical Chemistry, Faculty of Sciences, University of Geneva, Quai Ernest-Ansermet 30, 1211 Geneva 4, Switzerland
- National
Centre of Competence in Research (NCCR) Catalysis, University of Geneva, Quai Ernest-Ansermet 30, 1211 Geneva 4, Switzerland
| | - Amogh Kulkarni
- Department
of Inorganic and Analytical Chemistry, Faculty of Sciences, University of Geneva, Quai Ernest-Ansermet 30, 1211 Geneva 4, Switzerland
| | - Selmihan Sahin
- Department
of Inorganic and Analytical Chemistry, Faculty of Sciences, University of Geneva, Quai Ernest-Ansermet 30, 1211 Geneva 4, Switzerland
| | - Plinio Maroni
- Department
of Inorganic and Analytical Chemistry, Faculty of Sciences, University of Geneva, Quai Ernest-Ansermet 30, 1211 Geneva 4, Switzerland
| | - Ross D. Milton
- Department
of Inorganic and Analytical Chemistry, Faculty of Sciences, University of Geneva, Quai Ernest-Ansermet 30, 1211 Geneva 4, Switzerland
- National
Centre of Competence in Research (NCCR) Catalysis, University of Geneva, Quai Ernest-Ansermet 30, 1211 Geneva 4, Switzerland
| | - Matteo Grattieri
- Dipartimento
di Chimica, Università degli Studi
di Bari “Aldo Moro”, via E. Orabona 4, Bari 70125, Italy
- IPCF-CNR
Istituto per i Processi Chimico Fisici, Consiglio Nazionale delle Ricerche, via E. Orabona 4, Bari 70125, Italy
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4
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Phosphorylation disrupts long-distance electron transport in cytochrome c. Nat Commun 2022; 13:7100. [PMID: 36402842 PMCID: PMC9675734 DOI: 10.1038/s41467-022-34809-1] [Citation(s) in RCA: 0] [Impact Index Per Article: 0] [Reference Citation Analysis] [Abstract] [Key Words] [Track Full Text] [Figures] [Journal Information] [Subscribe] [Scholar Register] [Received: 07/18/2022] [Accepted: 11/08/2022] [Indexed: 11/21/2022] Open
Abstract
It has been recently shown that electron transfer between mitochondrial cytochrome c and the cytochrome c1 subunit of the cytochrome bc1 can proceed at long-distance through the aqueous solution. Cytochrome c is thought to adjust its activity by changing the affinity for its partners via Tyr48 phosphorylation, but it is unknown how it impacts the nanoscopic environment, interaction forces, and long-range electron transfer. Here, we constrain the orientation and separation between cytochrome c1 and cytochrome c or the phosphomimetic Y48pCMF cytochrome c, and deploy an array of single-molecule, bulk, and computational methods to investigate the molecular mechanism of electron transfer regulation by cytochrome c phosphorylation. We demonstrate that phosphorylation impairs long-range electron transfer, shortens the long-distance charge conduit between the partners, strengthens their interaction, and departs it from equilibrium. These results unveil a nanoscopic view of the interaction between redox protein partners in electron transport chains and its mechanisms of regulation.
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5
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Teng X, Dai Y, Li J. Methodological advances of bioanalysis and biochemical targeting of intracellular G-quadruplexes. EXPLORATION (BEIJING, CHINA) 2022; 2:20210214. [PMID: 37323879 PMCID: PMC10191030 DOI: 10.1002/exp.20210214] [Citation(s) in RCA: 6] [Impact Index Per Article: 3.0] [Reference Citation Analysis] [Abstract] [Key Words] [Grants] [Track Full Text] [Figures] [Subscribe] [Scholar Register] [Received: 11/14/2021] [Accepted: 01/11/2022] [Indexed: 06/17/2023]
Abstract
G-quadruplexes (G4s) are a kind of non-canonical nucleic acid secondary structures, which involve in various biological processes in living cells. The relationships between G4s and human diseases, such as tumors, neurodegenerative diseases, and viral infections, have attracted great attention in the last decade. G4s are considered as a promising new target for disease treatment. For instance, G4 ligands are reported to be potentially effective in SARS-COV-2 treatment. However, because of the lack of analytical methods with high performance for the identification of intracellular G4s, the detailed mechanisms of the biofunctions of G4s remain elusive. Meanwhile, through demonstrating the principles of how the G4s systematically modulate the cellular processes with advanced detection methods, biochemical targeting of G4s in living cells can be realized by chemical and biological tools and becomes useful in biomedicine. This review highlights recent methodological advances about intracellular G4s and provides an outlook on the improvement of the bioanalysis and biochemical targeting tools of G4s.
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Affiliation(s)
- Xucong Teng
- Department of Chemistry, Center for BioAnalytical Chemistry, Key Laboratory of Bioorganic Phosphorus Chemistry & Chemical BiologyTsinghua UniversityBeijingChina
| | - Yicong Dai
- Department of Chemistry, Center for BioAnalytical Chemistry, Key Laboratory of Bioorganic Phosphorus Chemistry & Chemical BiologyTsinghua UniversityBeijingChina
| | - Jinghong Li
- Department of Chemistry, Center for BioAnalytical Chemistry, Key Laboratory of Bioorganic Phosphorus Chemistry & Chemical BiologyTsinghua UniversityBeijingChina
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6
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Moraille P, Abdali Z, Ramkaran M, Polcari D, Patience GS, Dorval Courchesne N, Badia A. Experimental Methods in Chemical Engineering: Atomic force microscopy—
AFM. CAN J CHEM ENG 2022. [DOI: 10.1002/cjce.24407] [Citation(s) in RCA: 0] [Impact Index Per Article: 0] [Reference Citation Analysis] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Indexed: 11/08/2022]
Affiliation(s)
| | - Zahra Abdali
- Chemical Engineering, McGill University Québec Canada
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7
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Jin R, Lu HY, Cheng L, Zhuang J, Jiang D, Chen HY. Highly spatial imaging of electrochemical activity on the wrinkles of graphene using all-solid scanning electrochemical cell microscopy. FUNDAMENTAL RESEARCH 2022; 2:193-197. [PMID: 38933173 PMCID: PMC11197576 DOI: 10.1016/j.fmre.2021.08.001] [Citation(s) in RCA: 0] [Impact Index Per Article: 0] [Reference Citation Analysis] [Abstract] [Key Words] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Received: 06/02/2021] [Revised: 07/26/2021] [Accepted: 08/04/2021] [Indexed: 11/25/2022] Open
Abstract
Here, all-solid scanning electrochemical cell microscopy (SECCM) is first established by filling polyacrylamide (PAM) into nanocapillaries as a solid electrolyte. A solid PAM nanoball at the tip of a nanocapillary contacts graphene and behaves as an electrochemical cell for simultaneously measuring the morphology and electrochemical activity. Compared with liquid droplet-based SECCM, this solid nanoball is stable and does not leave any electrolyte at the contact regions, which permits accurate and continuous scanning of the surface without any intervals. Accordingly, the resolutions in the lateral (x-y) and vertical (z) directions are improved to ∼10 nm. The complete scanning of the wrinkles on graphene records low currents at the two sidewalls of the wrinkles and a relatively high current at the center of the wrinkles. The heterogeneity in the electrochemical activity of the wrinkle illustrates different electron transfer features on surfaces with varied curvatures, which is hardly observed by the current electrochemical or optical methods. The successful establishment of this high spatial electrochemical microscopy overcomes the current challenges in investigating the electrochemical activity of materials at the nanoscale, which is significant for a better understanding of electron transfer in materials.
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Affiliation(s)
- Rong Jin
- State Key Laboratory of Analytical Chemistry for Life Science, School of Chemistry and Chemical Engineering, Nanjing University, Nanjing, Jiangsu, 210023, China
| | - Hong-yan Lu
- State Key Laboratory of Analytical Chemistry for Life Science, School of Chemistry and Chemical Engineering, Nanjing University, Nanjing, Jiangsu, 210023, China
| | - Lei Cheng
- School of Mechanical Engineering, Xi'an Jiaotong University, Xi'an, Shanxi, 710049, China
| | - Jian Zhuang
- School of Mechanical Engineering, Xi'an Jiaotong University, Xi'an, Shanxi, 710049, China
| | - Dechen Jiang
- State Key Laboratory of Analytical Chemistry for Life Science, School of Chemistry and Chemical Engineering, Nanjing University, Nanjing, Jiangsu, 210023, China
| | - Hong-Yuan Chen
- State Key Laboratory of Analytical Chemistry for Life Science, School of Chemistry and Chemical Engineering, Nanjing University, Nanjing, Jiangsu, 210023, China
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8
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Paiva TO, Schneider A, Bataille L, Chovin A, Anne A, Michon T, Wege C, Demaille C. Enzymatic activity of individual bioelectrocatalytic viral nanoparticles: dependence of catalysis on the viral scaffold and its length. NANOSCALE 2022; 14:875-889. [PMID: 34985473 DOI: 10.1039/d1nr07445h] [Citation(s) in RCA: 3] [Impact Index Per Article: 1.5] [Reference Citation Analysis] [Abstract] [MESH Headings] [Track Full Text] [Subscribe] [Scholar Register] [Indexed: 06/14/2023]
Abstract
The enzymatic activity of tobacco mosaic virus (TMV) nanorod particles decorated with an integrated electro-catalytic system, comprising the quinoprotein glucose-dehydrogenase (PQQ-GDH) enzyme and ferrocenylated PEG chains as redox mediators, is probed at the individual virion scale by atomic force microscopy-scanning electrochemical atomic force microscopy (AFM-SECM). A marked dependence of the catalytic activity on the particle length is observed. This finding can be explained by electron propagation along the viral backbone, resulting from electron exchange between ferrocene moieties, coupled with enzymatic catalysis. Thus, the use of a simple 1D diffusion/reaction model allows the determination of the kinetic parameters of the virus-supported enzyme. Comparative analysis of the catalytic behavior of the Fc-PEG/PQQ-GDH system assembled on two differing viral scaffolds, TMV (this work) and bacteriophage-fd (previous work), reveals two distinct kinetic effects of scaffolding: An enhancement of catalysis that does not depend on the virus type and a modulation of substrate inhibition that depends on the virus type. AFM-SECM detection of the enzymatic activity of a few tens of PQQ-GDH molecules, decorating a 40 nm-long viral domain, is also demonstrated, a record in terms of the lowest number of enzyme molecules interrogated by an electrochemical imaging technique.
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Affiliation(s)
- Telmo O Paiva
- Université de Paris, Laboratoire d'Electrochimie Moléculaire, CNRS UMR 7591, F-75013 Paris, France.
| | - Angela Schneider
- University of Stuttgart, Institute of Biomaterials and Biomolecular Systems, Research Unit Molecular and Synthetic Plant Virology, 70569 Stuttgart, Germany.
| | - Laure Bataille
- Université de Bordeaux, Biologie du Fruit et Pathologie, INRA UMR 1332, F-33140 Villenave d'Ornon, France.
| | - Arnaud Chovin
- Université de Paris, Laboratoire d'Electrochimie Moléculaire, CNRS UMR 7591, F-75013 Paris, France.
| | - Agnès Anne
- Université de Paris, Laboratoire d'Electrochimie Moléculaire, CNRS UMR 7591, F-75013 Paris, France.
| | - Thierry Michon
- Université de Bordeaux, Biologie du Fruit et Pathologie, INRA UMR 1332, F-33140 Villenave d'Ornon, France.
| | - Christina Wege
- University of Stuttgart, Institute of Biomaterials and Biomolecular Systems, Research Unit Molecular and Synthetic Plant Virology, 70569 Stuttgart, Germany.
| | - Christophe Demaille
- Université de Paris, Laboratoire d'Electrochimie Moléculaire, CNRS UMR 7591, F-75013 Paris, France.
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9
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Sheng T, Guan X, Liu C, Su Y. De Novo Approach to Encapsulating Biocatalysts into Synthetic Matrixes: From Enzymes to Microbial Electrocatalysts. ACS APPLIED MATERIALS & INTERFACES 2021; 13:52234-52249. [PMID: 34352175 DOI: 10.1021/acsami.1c09708] [Citation(s) in RCA: 12] [Impact Index Per Article: 4.0] [Reference Citation Analysis] [Abstract] [Key Words] [Track Full Text] [Subscribe] [Scholar Register] [Indexed: 06/13/2023]
Abstract
Biocatalysts hold great promise in chemical and electrochemical reactions. However, biocatalysts are prone to inhospitable physiochemical conditions. Encapsulating biocatalysts into a synthetic host matrix can improve their stability and activity, and broaden their operational conditions. In this Review, we summarize the emerging de novo approaches to encapsulating biocatalysts into synthetic matrixes. Here, de novo means that embedding of biocatalysts and construction of matrixes take place simultaneously. We discuss the advantages and limitations of the de novo approach. On the basis of the nature of the biocatalysts and the synthetic frameworks, we specifically focus on two aspects: (1) encapsulation of enzymes (in vitro) in metal-organic frameworks and (2) encapsulation of microbial electrocatalysts (in vivo) on the electrode. For both cases, we discuss how the encapsulation improves biocatalysts' performance (stability, viability, activity, and etc.). We also highlight the benefit of encapsulation in facilitating the transport of charge carriers in microbial electrocatalysis.
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Affiliation(s)
- Tianran Sheng
- Suzhou Institute for Advanced Research, University of Science and Technology of China, Suzhou, Jiangsu 215123, China
| | - Xun Guan
- Department of Chemistry and Biochemistry, University of California, Los Angeles, Los Angeles, California 90095, United States
| | - Chong Liu
- Department of Chemistry and Biochemistry, University of California, Los Angeles, Los Angeles, California 90095, United States
| | - Yude Su
- Suzhou Institute for Advanced Research, University of Science and Technology of China, Suzhou, Jiangsu 215123, China
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10
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Bhat SV, Price JDW, Dahms TES. AFM-Based Correlative Microscopy Illuminates Human Pathogens. Front Cell Infect Microbiol 2021; 11:655501. [PMID: 34026660 PMCID: PMC8138568 DOI: 10.3389/fcimb.2021.655501] [Citation(s) in RCA: 5] [Impact Index Per Article: 1.7] [Reference Citation Analysis] [Abstract] [Key Words] [Track Full Text] [Download PDF] [Figures] [Journal Information] [Subscribe] [Scholar Register] [Received: 01/20/2021] [Accepted: 04/08/2021] [Indexed: 12/25/2022] Open
Abstract
Microbes have an arsenal of virulence factors that contribute to their pathogenicity. A number of challenges remain to fully understand disease transmission, fitness landscape, antimicrobial resistance and host heterogeneity. A variety of tools have been used to address diverse aspects of pathogenicity, from molecular host-pathogen interactions to the mechanisms of disease acquisition and transmission. Current gaps in our knowledge include a more direct understanding of host-pathogen interactions, including signaling at interfaces, and direct phenotypic confirmation of pathogenicity. Correlative microscopy has been gaining traction to address the many challenges currently faced in biomedicine, in particular the combination of optical and atomic force microscopy (AFM). AFM, generates high-resolution surface topographical images, and quantifies mechanical properties at the pN scale under physiologically relevant conditions. When combined with optical microscopy, AFM probes pathogen surfaces and their physical and molecular interaction with host cells, while the various modes of optical microscopy view internal cellular responses of the pathogen and host. Here we review the most recent advances in our understanding of pathogens, recent applications of AFM to the field, how correlative AFM-optical microspectroscopy and microscopy have been used to illuminate pathogenicity and how these methods can reach their full potential for studying host-pathogen interactions.
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Affiliation(s)
- Supriya V Bhat
- Department of Chemistry and Biochemistry, University of Regina, Regina, SK, Canada
| | - Jared D W Price
- Department of Chemistry and Biochemistry, University of Regina, Regina, SK, Canada
| | - Tanya E S Dahms
- Department of Chemistry and Biochemistry, University of Regina, Regina, SK, Canada
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11
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Souza JCP, Macedo LJA, Hassan A, Sedenho GC, Modenez IA, Crespilho FN. In Situ
and
Operando
Techniques for Investigating Electron Transfer in Biological Systems. ChemElectroChem 2020. [DOI: 10.1002/celc.202001327] [Citation(s) in RCA: 10] [Impact Index Per Article: 2.5] [Reference Citation Analysis] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Indexed: 12/12/2022]
Affiliation(s)
- João C. P. Souza
- São Carlos Institute of Chemistry University of São Paulo 13560-970 São Carlos São Paulo Brazil
- Campus Rio Verde Goiano Federal Institute of Education, Science and Technology 75901-970 Rio Verde Goiás Brazil
| | - Lucyano J. A. Macedo
- São Carlos Institute of Chemistry University of São Paulo 13560-970 São Carlos São Paulo Brazil
| | - Ayaz Hassan
- São Carlos Institute of Chemistry University of São Paulo 13560-970 São Carlos São Paulo Brazil
| | - Graziela C. Sedenho
- São Carlos Institute of Chemistry University of São Paulo 13560-970 São Carlos São Paulo Brazil
| | - Iago A. Modenez
- São Carlos Institute of Chemistry University of São Paulo 13560-970 São Carlos São Paulo Brazil
| | - Frank N. Crespilho
- São Carlos Institute of Chemistry University of São Paulo 13560-970 São Carlos São Paulo Brazil
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12
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Caniglia G, Kranz C. Scanning electrochemical microscopy and its potential for studying biofilms and antimicrobial coatings. Anal Bioanal Chem 2020; 412:6133-6148. [PMID: 32691088 PMCID: PMC7442582 DOI: 10.1007/s00216-020-02782-7] [Citation(s) in RCA: 12] [Impact Index Per Article: 3.0] [Reference Citation Analysis] [Abstract] [Key Words] [MESH Headings] [Grants] [Track Full Text] [Download PDF] [Figures] [Journal Information] [Subscribe] [Scholar Register] [Received: 05/17/2020] [Revised: 06/08/2020] [Accepted: 06/19/2020] [Indexed: 02/06/2023]
Abstract
Biofilms are known to be well-organized microbial communities embedded in an extracellular polymeric matrix, which supplies bacterial protection against external stressors. Biofilms are widespread and diverse, and despite the considerable large number of publications and efforts reported regarding composition, structure and cell-to-cell communication within biofilms in the last decades, the mechanisms of biofilm formation, the interaction and communication between bacteria are still not fully understood. This knowledge is required to understand why biofilms form and how we can combat them or how we can take advantage of these sessile communities, e.g. in biofuel cells. Therefore, in situ and real-time monitoring of nutrients, metabolites and quorum sensing molecules is of high importance, which may help to fill that knowledge gap. This review focuses on the potential of scanning electrochemical microscopy (SECM) as a versatile method for in situ studies providing temporal and lateral resolution in order to elucidate cell-to-cell communication, microbial metabolism and antimicrobial impact, e.g. of antimicrobial coatings through the study of electrochemical active molecules. Given the complexity and diversity of biofilms, challenges and limitations will be also discussed.
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Affiliation(s)
- Giada Caniglia
- Institute of Analytical and Bioanalytical Chemistry, Ulm University, Albert-Einstein-Allee, 11, 89081, Ulm, Germany
| | - Christine Kranz
- Institute of Analytical and Bioanalytical Chemistry, Ulm University, Albert-Einstein-Allee, 11, 89081, Ulm, Germany.
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13
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Paiva TO, Torbensen K, Patel AN, Anne A, Chovin A, Demaille C, Bataille L, Michon T. Probing the Enzymatic Activity of Individual Biocatalytic fd-Viral Particles by Electrochemical-Atomic Force Microscopy. ACS Catal 2020. [DOI: 10.1021/acscatal.0c01920] [Citation(s) in RCA: 5] [Impact Index Per Article: 1.3] [Reference Citation Analysis] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Indexed: 11/28/2022]
Affiliation(s)
- Telmo O. Paiva
- Université de Paris, Laboratoire d’Electrochimie Moléculaire, CNRS UMR 7591, F-75006 Paris, France
| | - Kristian Torbensen
- Université de Paris, Laboratoire d’Electrochimie Moléculaire, CNRS UMR 7591, F-75006 Paris, France
| | - Anisha N. Patel
- Université de Paris, Laboratoire d’Electrochimie Moléculaire, CNRS UMR 7591, F-75006 Paris, France
| | - Agnès Anne
- Université de Paris, Laboratoire d’Electrochimie Moléculaire, CNRS UMR 7591, F-75006 Paris, France
| | - Arnaud Chovin
- Université de Paris, Laboratoire d’Electrochimie Moléculaire, CNRS UMR 7591, F-75006 Paris, France
| | - Christophe Demaille
- Université de Paris, Laboratoire d’Electrochimie Moléculaire, CNRS UMR 7591, F-75006 Paris, France
| | - Laure Bataille
- Université de Bordeaux, Biologie du Fruit et Pathologie, INRA UMR 1332, F-33140 Villenave d’Ornon, France
| | - Thierry Michon
- Université de Bordeaux, Biologie du Fruit et Pathologie, INRA UMR 1332, F-33140 Villenave d’Ornon, France
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14
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Chen H, Qin Z, He M, Liu Y, Wu Z. Application of Electrochemical Atomic Force Microscopy (EC-AFM) in the Corrosion Study of Metallic Materials. MATERIALS 2020; 13:ma13030668. [PMID: 32028601 PMCID: PMC7041398 DOI: 10.3390/ma13030668] [Citation(s) in RCA: 16] [Impact Index Per Article: 4.0] [Reference Citation Analysis] [Abstract] [Key Words] [Track Full Text] [Download PDF] [Figures] [Subscribe] [Scholar Register] [Received: 12/27/2019] [Revised: 01/21/2020] [Accepted: 01/26/2020] [Indexed: 12/18/2022]
Abstract
Electrochemical atomic force microscopy (EC-AFM), a branch of a scanning probe microscopy (SPM), can image substrate topography with high resolution. Since its inception, it was extended to a wide range of research areas through continuous improvement. The presence of an electrolytic cell and a potentiostat makes it possible to observe the topographical changes of the sample surface in real time. EC-AFM is used in in situ corrosion research because the samples are not required to be electrically conductive. It is widely used in passive film properties, surface dissolution, early-stage corrosion initiation, inhibitor efficiency, and many other branches of corrosion science. This review provides the research progress of EC-AFM and summarizes the extensive applications and investigations using EC-AFM in corrosion science.
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Affiliation(s)
- Hanbing Chen
- School of Materials Science and Engineering, University of Shanghai for Science and Technology, Shanghai 200093, China;
| | - Zhenbo Qin
- Key Laboratory of Advanced Ceramics and Machining Technology (Ministry of Education), Tianjin University, Tianjin 300072, China;
| | - Meifeng He
- School of Materials Science and Engineering, University of Shanghai for Science and Technology, Shanghai 200093, China;
- Correspondence: (M.H.); (Z.W.)
| | - Yichun Liu
- School of Materials Science and Engineering, Kunming University of Science and Technology, Kunming 650093, China;
| | - Zhong Wu
- Key Laboratory of Advanced Ceramics and Machining Technology (Ministry of Education), Tianjin University, Tianjin 300072, China;
- Correspondence: (M.H.); (Z.W.)
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15
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Atomic force microscopy - Scanning electrochemical microscopy (AFM-SECM) for nanoscale topographical and electrochemical characterization: Principles, applications and perspectives. Electrochim Acta 2020. [DOI: 10.1016/j.electacta.2019.135472] [Citation(s) in RCA: 28] [Impact Index Per Article: 7.0] [Reference Citation Analysis] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Indexed: 01/18/2023]
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16
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Martínez-Turiño S, García JA. Potyviral coat protein and genomic RNA: A striking partnership leading virion assembly and more. Adv Virus Res 2020; 108:165-211. [PMID: 33837716 DOI: 10.1016/bs.aivir.2020.09.001] [Citation(s) in RCA: 16] [Impact Index Per Article: 4.0] [Reference Citation Analysis] [Abstract] [Key Words] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Indexed: 01/17/2023]
Abstract
Potyvirus genus clusters a significant and expanding number of widely distributed plant viruses, responsible for large losses impacting most crops of economic interest. The potyviral genome is a single-stranded, linear, positive-sense RNA of around 10kb that is encapsidated in flexuous rod-shaped filaments, mostly made up of a helically arranged coat protein (CP). Beyond its structural role of protecting the viral genome, the potyviral CP is a multitasking protein intervening in practically all steps of the virus life cycle. In particular, interactions between the CP and the viral RNA must be tightly controlled to allow the correct assignment of the RNA to each of its functions through the infection process. This review attempts to bring together the most relevant available information regarding the architecture and modus operandi of potyviral CP and virus particles, highlighting significant discoveries, but also substantial gaps in the existing knowledge on mechanisms orchestrating virion assembly and disassembly. Biotechnological applications based on potyvirus nanoparticles is another important topic addressed here.
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17
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Djoumer R, Anne A, Chovin A, Demaille C, Dejous C, Hallil H, Lachaud JL. Converting Any Faradaic Current Generated at an Electrode under Potentiostatic Control into a Remote Fluorescence Signal. Anal Chem 2019; 91:6775-6782. [PMID: 31034205 DOI: 10.1021/acs.analchem.9b00851] [Citation(s) in RCA: 5] [Impact Index Per Article: 1.0] [Reference Citation Analysis] [Abstract] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Indexed: 11/29/2022]
Abstract
We describe the development of an original faradaic current-to-fluorescence conversion scheme. The proposed instrumental strategy consists of coupling the electrochemical reaction of any species at an electrode under potentiostatic control with the fluorescence emission of a species produced at the counter electrode. In order to experimentally validate this scheme, the fluorogenic species resazurin is chosen as a fluorescent reporter molecule, and its complex reduction mechanism is first studied in unprecedented detail. This kinetic study is carried out by recording simultaneous cyclic voltammograms and voltfluorograms at the same electrode. Numerical simulations are used to account for the experimental current and fluorescence signals, to analyze their degree of correlation, and to decipher their relation to resazurin reduction kinetics. It is then shown that, provided that the reduction of resazurin takes place at a micrometer-sized electrode, the fluorescence emission perfectly tracks the faradaic current. By implementing this ideal configuration at the counter electrode of a potentiostatic setup, it is finally demonstrated that the oxidation reaction of a nonfluorescent species at the working electrode can be quantitatively transduced into simultaneous emission of fluorescence.
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Affiliation(s)
- Rabia Djoumer
- Laboratoire d'Electrochimie Moléculaire, UMR 7591 CNRS , Université Paris Diderot , Sorbonne Paris Cité, 15 rue Jean-Antoine de Baïf , Paris F-75205 Cedex 13 , France
| | - Agnès Anne
- Laboratoire d'Electrochimie Moléculaire, UMR 7591 CNRS , Université Paris Diderot , Sorbonne Paris Cité, 15 rue Jean-Antoine de Baïf , Paris F-75205 Cedex 13 , France
| | - Arnaud Chovin
- Laboratoire d'Electrochimie Moléculaire, UMR 7591 CNRS , Université Paris Diderot , Sorbonne Paris Cité, 15 rue Jean-Antoine de Baïf , Paris F-75205 Cedex 13 , France
| | - Christophe Demaille
- Laboratoire d'Electrochimie Moléculaire, UMR 7591 CNRS , Université Paris Diderot , Sorbonne Paris Cité, 15 rue Jean-Antoine de Baïf , Paris F-75205 Cedex 13 , France
| | - Corinne Dejous
- Université de Bordeaux , Bordeaux INP, IMS, UMR 5218 CNRS , Talence F-33405 , France
| | - Hamida Hallil
- Université de Bordeaux , Bordeaux INP, IMS, UMR 5218 CNRS , Talence F-33405 , France
| | - Jean-Luc Lachaud
- Université de Bordeaux , Bordeaux INP, IMS, UMR 5218 CNRS , Talence F-33405 , France
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18
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Torbensen K, Patel AN, Anne A, Chovin A, Demaille C, Bataille L, Michon T, Grelet E. Immuno-Based Molecular Scaffolding of Glucose Dehydrogenase and Ferrocene Mediator on fd Viral Particles Yields Enhanced Bioelectrocatalysis. ACS Catal 2019. [DOI: 10.1021/acscatal.9b01263] [Citation(s) in RCA: 7] [Impact Index Per Article: 1.4] [Reference Citation Analysis] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Indexed: 12/15/2022]
Affiliation(s)
- Kristian Torbensen
- Laboratoire d’Electrochimie Moléculaire, Université Paris Diderot, Sorbonne Paris Cité, Unité Mixte de Recherche Université − UMR 7591 CNRS, Bâtiment Lavoisier, 15 Rue Jean-Antoine de Baïf, 75205 CEDEX 13 Paris, France
| | - Anisha N. Patel
- Laboratoire d’Electrochimie Moléculaire, Université Paris Diderot, Sorbonne Paris Cité, Unité Mixte de Recherche Université − UMR 7591 CNRS, Bâtiment Lavoisier, 15 Rue Jean-Antoine de Baïf, 75205 CEDEX 13 Paris, France
| | - Agnès Anne
- Laboratoire d’Electrochimie Moléculaire, Université Paris Diderot, Sorbonne Paris Cité, Unité Mixte de Recherche Université − UMR 7591 CNRS, Bâtiment Lavoisier, 15 Rue Jean-Antoine de Baïf, 75205 CEDEX 13 Paris, France
| | - Arnaud Chovin
- Laboratoire d’Electrochimie Moléculaire, Université Paris Diderot, Sorbonne Paris Cité, Unité Mixte de Recherche Université − UMR 7591 CNRS, Bâtiment Lavoisier, 15 Rue Jean-Antoine de Baïf, 75205 CEDEX 13 Paris, France
| | - Christophe Demaille
- Laboratoire d’Electrochimie Moléculaire, Université Paris Diderot, Sorbonne Paris Cité, Unité Mixte de Recherche Université − UMR 7591 CNRS, Bâtiment Lavoisier, 15 Rue Jean-Antoine de Baïf, 75205 CEDEX 13 Paris, France
| | - Laure Bataille
- UMR 1332 Biologie du Fruit et Pathologie, INRA, Université de Bordeaux, 71, Avenue Edouard Bourlaux, CS 20032-33882 CEDEX Villenave d’Ornon, France
| | - Thierry Michon
- UMR 1332 Biologie du Fruit et Pathologie, INRA, Université de Bordeaux, 71, Avenue Edouard Bourlaux, CS 20032-33882 CEDEX Villenave d’Ornon, France
| | - Eric Grelet
- Centre de Recherche Paul-Pascal, UMR 5031 CNRS, Université de Bordeaux, 115 Avenue Schweitzer, 33600 Pessac, France
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19
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Conzuelo F, Schulte A, Schuhmann W. Biological imaging with scanning electrochemical microscopy. Proc Math Phys Eng Sci 2018; 474:20180409. [PMID: 30839832 PMCID: PMC6237495 DOI: 10.1098/rspa.2018.0409] [Citation(s) in RCA: 16] [Impact Index Per Article: 2.7] [Reference Citation Analysis] [Abstract] [Key Words] [Grants] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Received: 06/16/2018] [Accepted: 09/04/2018] [Indexed: 12/27/2022] Open
Abstract
Scanning electrochemical microscopy (SECM) is a powerful and versatile technique for visualizing the local electrochemical activity of a surface as an ultramicroelectrode tip is moved towards or over a sample of interest using precise positioning systems. In comparison with other scanning probe techniques, SECM not only enables topographical surface mapping but also gathers chemical information with high spatial resolution. Considerable progress has been made in the analysis of biological samples, including living cells and immobilized biomacromolecules such as enzymes, antibodies and DNA fragments. Moreover, combinations of SECM with comple-mentary analytical tools broadened its applicability and facilitated multi-functional analysis with extended life science capabilities. The aim of this review is to present a brief topical overview on recent applications of biological SECM, with particular emphasis on important technical improvements of this surface imaging technique, recommended applications and future trends.
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Affiliation(s)
- Felipe Conzuelo
- Analytical Chemistry—Center for Electrochemical Sciences (CES), Faculty for Chemistry and Biochemistry, Ruhr-Universität Bochum, Universitätsstr. 150, 44780 Bochum, Germany
| | - Albert Schulte
- School of Biomolecular Science and Engineering (BSE), Vidyasirimedhi Institute of Science and Technology (VISTEC), Rayong 21210, Thailand
| | - Wolfgang Schuhmann
- Analytical Chemistry—Center for Electrochemical Sciences (CES), Faculty for Chemistry and Biochemistry, Ruhr-Universität Bochum, Universitätsstr. 150, 44780 Bochum, Germany
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20
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Huang L, Li Z, Lou Y, Cao F, Zhang D, Li X. Recent Advances in Scanning Electrochemical Microscopy for Biological Applications. MATERIALS (BASEL, SWITZERLAND) 2018; 11:E1389. [PMID: 30096895 PMCID: PMC6119995 DOI: 10.3390/ma11081389] [Citation(s) in RCA: 13] [Impact Index Per Article: 2.2] [Reference Citation Analysis] [Abstract] [Key Words] [Track Full Text] [Download PDF] [Figures] [Subscribe] [Scholar Register] [Received: 06/25/2018] [Revised: 07/24/2018] [Accepted: 07/28/2018] [Indexed: 12/17/2022]
Abstract
Scanning electrochemical microscopy (SECM) is a chemical microscopy technique with high spatial resolution for imaging sample topography and mapping specific chemical species in liquid environments. With the development of smaller, more sensitive ultramicroelectrodes (UMEs) and more precise computer-controlled measurements, SECM has been widely used to study biological systems over the past three decades. Recent methodological breakthroughs have popularized SECM as a tool for investigating molecular-level chemical reactions. The most common applications include monitoring and analyzing the biological processes associated with enzymatic activity and DNA, and the physiological activity of living cells and other microorganisms. The present article first introduces the basic principles of SECM, followed by an updated review of the applications of SECM in biological studies on enzymes, DNA, proteins, and living cells. Particularly, the potential of SECM for investigating bacterial and biofilm activities is discussed.
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Affiliation(s)
- Luyao Huang
- Institute for Advanced Materials and Technology, University of Science and Technology Beijing, Beijing 100083, China.
| | - Ziyu Li
- Institute for Advanced Materials and Technology, University of Science and Technology Beijing, Beijing 100083, China.
| | - Yuntian Lou
- Institute for Advanced Materials and Technology, University of Science and Technology Beijing, Beijing 100083, China.
| | - Fahe Cao
- Department of Chemistry, Zhejiang University, Hangzhou 310027, China.
| | - Dawei Zhang
- Institute for Advanced Materials and Technology, University of Science and Technology Beijing, Beijing 100083, China.
| | - Xiaogang Li
- Institute for Advanced Materials and Technology, University of Science and Technology Beijing, Beijing 100083, China.
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21
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Wang Y, Shan X, Tao N. Emerging tools for studying single entity electrochemistry. Faraday Discuss 2018; 193:9-39. [PMID: 27722354 DOI: 10.1039/c6fd00180g] [Citation(s) in RCA: 69] [Impact Index Per Article: 11.5] [Reference Citation Analysis] [Abstract] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Indexed: 01/07/2023]
Abstract
Electrochemistry studies charge transfer and related processes at various microscopic structures (atomic steps, islands, pits and kinks on electrodes), and mesoscopic materials (nanoparticles, nanowires, viruses, vesicles and cells) made by nature and humans, involving ions and molecules. The traditional approach measures averaged electrochemical quantities of a large ensemble of these individual entities, including the microstructures, mesoscopic materials, ions and molecules. There is a need to develop tools to study single entities because a real system is usually heterogeneous, e.g., containing nanoparticles with different sizes and shapes. Even in the case of "homogeneous" molecules, they bind to different microscopic structures of an electrode, assume different conformations and fluctuate over time, leading to heterogeneous reactions. Here we highlight some emerging tools for studying single entity electrochemistry, discuss their strengths and weaknesses, and provide personal views on the need for tools with new capabilities for further advancing single entity electrochemistry.
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Affiliation(s)
- Yixian Wang
- Center for Biosensors and Bioelectronics, Biodesign Institute and School of Electrical, Computer and Energy Engineering, Arizona State University, Tempe, Arizona 85287, USA.
| | - Xiaonan Shan
- Center for Biosensors and Bioelectronics, Biodesign Institute and School of Electrical, Computer and Energy Engineering, Arizona State University, Tempe, Arizona 85287, USA.
| | - Nongjian Tao
- Center for Biosensors and Bioelectronics, Biodesign Institute and School of Electrical, Computer and Energy Engineering, Arizona State University, Tempe, Arizona 85287, USA. and State Key Laboratory of Analytical Chemistry for Life Science, School of Chemistry and Chemical Engineering, Nanjing University, Nanjing 210093, China
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22
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Patel AN, Kranz C. (Multi)functional Atomic Force Microscopy Imaging. ANNUAL REVIEW OF ANALYTICAL CHEMISTRY (PALO ALTO, CALIF.) 2018; 11:329-350. [PMID: 29490193 DOI: 10.1146/annurev-anchem-061417-125716] [Citation(s) in RCA: 10] [Impact Index Per Article: 1.7] [Reference Citation Analysis] [Abstract] [Key Words] [Track Full Text] [Subscribe] [Scholar Register] [Indexed: 06/08/2023]
Abstract
Incorporating functionality to atomic force microscopy (AFM) to obtain physical and chemical information has always been a strong focus in AFM research. Modifying AFM probes with specific molecules permits accessibility of chemical information via specific reactions and interactions. Fundamental understanding of molecular processes at the solid/liquid interface with high spatial resolution is essential to many emerging research areas. Nanoscale electrochemical imaging has emerged as a complementary technique to advanced AFM techniques, providing information on electrochemical interfacial processes. While this review presents a brief introduction to advanced AFM imaging modes, such as multiparametric AFM and topography recognition imaging, the main focus herein is on electrochemical imaging via hybrid AFM-scanning electrochemical microscopy. Recent applications and the challenges associated with such nanoelectrochemical imaging strategies are presented.
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Affiliation(s)
- Anisha N Patel
- Institute of Analytical and Bioanalytical Chemistry, Ulm University, Ulm 89081, Germany;
| | - Christine Kranz
- Institute of Analytical and Bioanalytical Chemistry, Ulm University, Ulm 89081, Germany;
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23
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Anne A, Chovin A, Demaille C, Michon T. Redox-Immunofunctionalized Potyvirus Nanoparticles for High-Resolution Imaging by AFM-SECM Correlative Microscopy. Methods Mol Biol 2018; 1776:455-470. [PMID: 29869260 DOI: 10.1007/978-1-4939-7808-3_30] [Citation(s) in RCA: 2] [Impact Index Per Article: 0.3] [Reference Citation Analysis] [Abstract] [Key Words] [MESH Headings] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Indexed: 06/08/2023]
Abstract
We present in this chapter a new experimental approach allowing the high resolution imaging of immune complexes on virus particles. Combined atomic force-electrochemical microscopy (AFM-SECM) is used to image the presence of ferrocene functionalized specific antibodies on the surface of potyvirus particles. For this purpose, potyviruses, flexuous filamentous phytoviruses with a high aspect ratio, have been chosen. This technique allows analysis of the distribution of antibody labeling over the virus population. But, more importantly, it opens up the imaging of immune complexes decorating a single viral particle. Finally, its high resolution allows the characterization in situ of the ultrastructure of a single immune complex on the particle.
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Affiliation(s)
- Agnès Anne
- Laboratory of Molecular Electrochemistry, CNRS-Université Paris Diderot, Paris, France.
| | - Arnaud Chovin
- Laboratory of Molecular Electrochemistry, CNRS-Université Paris Diderot, Paris, France
| | - Christophe Demaille
- Laboratory of Molecular Electrochemistry, CNRS-Université Paris Diderot, Paris, France.
| | - Thierry Michon
- Fruit Biology and Pathology, INRA-Université Bordeaux, Villenave d'Ornon, France.
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24
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Kai T, Zoski CG, Bard AJ. Scanning electrochemical microscopy at the nanometer level. Chem Commun (Camb) 2018; 54:1934-1947. [DOI: 10.1039/c7cc09777h] [Citation(s) in RCA: 81] [Impact Index Per Article: 13.5] [Reference Citation Analysis] [Abstract] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Indexed: 12/15/2022]
Abstract
Chemical and electrochemical reactions at high temporal and spatial resolution can be studied using nanoscale SECM.
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Affiliation(s)
- Tianhan Kai
- Center for Electrochemistry
- Department of Chemistry
- The University of Texas at Austin
- Austin
- USA
| | - Cynthia G. Zoski
- Center for Electrochemistry
- Department of Chemistry
- The University of Texas at Austin
- Austin
- USA
| | - Allen J. Bard
- Center for Electrochemistry
- Department of Chemistry
- The University of Texas at Austin
- Austin
- USA
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25
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Chennit K, Trasobares J, Anne A, Cambril E, Chovin A, Clément N, Demaille C. Electrochemical Imaging of Dense Molecular Nanoarrays. Anal Chem 2017; 89:11061-11069. [DOI: 10.1021/acs.analchem.7b03111] [Citation(s) in RCA: 8] [Impact Index Per Article: 1.1] [Reference Citation Analysis] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Indexed: 11/30/2022]
Affiliation(s)
- Khalil Chennit
- Laboratoire
d’Electrochimie Moléculaire, UMR 7591 CNRS, Université Paris Diderot, Sorbonne Paris Cité, 15 rue
Jean-Antoine de Baïf, F-75205
Cedex 13, Paris, France
| | - Jorge Trasobares
- Institute
of Electronics, Microelectronics and Nanotechnology, CNRS, University of Lille, Avenue Poincaré, BP60069, 59652, Villeneuve d’Ascq, France
| | - Agnès Anne
- Laboratoire
d’Electrochimie Moléculaire, UMR 7591 CNRS, Université Paris Diderot, Sorbonne Paris Cité, 15 rue
Jean-Antoine de Baïf, F-75205
Cedex 13, Paris, France
| | - Edmond Cambril
- Centre
de Nanosciences et de Nanotechnologies, CNRS, Univ. Paris-Sud, Université Paris-Saclay, C2N-Marcoussis, 91460, Marcoussis, France
| | - Arnaud Chovin
- Laboratoire
d’Electrochimie Moléculaire, UMR 7591 CNRS, Université Paris Diderot, Sorbonne Paris Cité, 15 rue
Jean-Antoine de Baïf, F-75205
Cedex 13, Paris, France
| | - Nicolas Clément
- Institute
of Electronics, Microelectronics and Nanotechnology, CNRS, University of Lille, Avenue Poincaré, BP60069, 59652, Villeneuve d’Ascq, France
| | - Christophe Demaille
- Laboratoire
d’Electrochimie Moléculaire, UMR 7591 CNRS, Université Paris Diderot, Sorbonne Paris Cité, 15 rue
Jean-Antoine de Baïf, F-75205
Cedex 13, Paris, France
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26
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Tavert-Roudet G, Anne A, Barra A, Chovin A, Demaille C, Michon T. The Potyvirus Particle Recruits the Plant Translation Initiation Factor eIF4E by Means of the VPg covalently Linked to the Viral RNA. MOLECULAR PLANT-MICROBE INTERACTIONS : MPMI 2017; 30:754-762. [PMID: 28609214 DOI: 10.1094/mpmi-04-17-0091-r] [Citation(s) in RCA: 17] [Impact Index Per Article: 2.4] [Reference Citation Analysis] [Abstract] [MESH Headings] [Track Full Text] [Subscribe] [Scholar Register] [Indexed: 05/12/2023]
Abstract
The viral protein genome-linked (VPg) of potyviruses is a protein covalently linked to the 5' end of viral RNA. It interacts with eIF4E, a component of the cellular translation initiation complex. It has been suggested that the 5' RNA-linked VPg could mimic the cellular mRNA cap, promoting synthesis of viral proteins. Here, we report evidence for recruitment of the plant eIF4E by Lettuce mosaic virus (LMV, potyvirus) particles via the 5' RNA-linked VPg. Analysis of the viral population was performed by enzyme-linked immunosorbent assay-based tests, either with crude extracts of LMV-infected tissues or purified viral particles. In both cases, LMV-VPg and LMV-eIF4E subpopulations could be detected. After reaching a maximum within the first 2 weeks postinoculation, these populations decreased and very few labeled particles were found later than 3 weeks postinoculation. The central domain of VPg (CD-VPg) was found to be exposed at the surface of the particles. Using a purified recombinant lettuce eIF4E and CD-VPg-specific antibodies, we demonstrate that the plant factor binds to the VPg via its central domain. Moreover, the plant eIF4E factor could be imaged at one end of the particles purified from LMV plant extracts, by immunoredox atomic force microscopy coupled to scanning electrochemical microscopy. We discuss the biological significance of these results.
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Affiliation(s)
| | - Agnès Anne
- 2 Laboratoire d'Electrochimie Moléculaire, UMR 7591 CNRS, Université Paris Diderot, Sorbonne Paris Cité, 15 rue Jean-Antoine de Baïf, F-75205 Paris Cedex 13, France
| | - Amandine Barra
- 1 UMR 1332 BFP, INRA, Université Bordeaux, 33883 Villenave d'Ornon, France; and
| | - Arnaud Chovin
- 2 Laboratoire d'Electrochimie Moléculaire, UMR 7591 CNRS, Université Paris Diderot, Sorbonne Paris Cité, 15 rue Jean-Antoine de Baïf, F-75205 Paris Cedex 13, France
| | - Christophe Demaille
- 2 Laboratoire d'Electrochimie Moléculaire, UMR 7591 CNRS, Université Paris Diderot, Sorbonne Paris Cité, 15 rue Jean-Antoine de Baïf, F-75205 Paris Cedex 13, France
| | - Thierry Michon
- 1 UMR 1332 BFP, INRA, Université Bordeaux, 33883 Villenave d'Ornon, France; and
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27
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Trasobares J, Rech J, Jonckheere T, Martin T, Aleveque O, Levillain E, Diez-Cabanes V, Olivier Y, Cornil J, Nys JP, Sivakumarasamy R, Smaali K, Leclere P, Fujiwara A, Théron D, Vuillaume D, Clément N. Estimation of π-π Electronic Couplings from Current Measurements. NANO LETTERS 2017; 17:3215-3224. [PMID: 28358215 DOI: 10.1021/acs.nanolett.7b00804] [Citation(s) in RCA: 14] [Impact Index Per Article: 2.0] [Reference Citation Analysis] [Abstract] [Key Words] [Track Full Text] [Subscribe] [Scholar Register] [Indexed: 05/28/2023]
Abstract
The π-π interactions between organic molecules are among the most important parameters for optimizing the transport and optical properties of organic transistors, light-emitting diodes, and (bio-) molecular devices. Despite substantial theoretical progress, direct experimental measurement of the π-π electronic coupling energy parameter t has remained an old challenge due to molecular structural variability and the large number of parameters that affect the charge transport. Here, we propose a study of π-π interactions from electrochemical and current measurements on a large array of ferrocene-thiolated gold nanocrystals. We confirm the theoretical prediction that t can be assessed from a statistical analysis of current histograms. The extracted value of t ≈35 meV is in the expected range based on our density functional theory analysis. Furthermore, the t distribution is not necessarily Gaussian and could be used as an ultrasensitive technique to assess intermolecular distance fluctuation at the subangström level. The present work establishes a direct bridge between quantum chemistry, electrochemistry, organic electronics, and mesoscopic physics, all of which were used to discuss results and perspectives in a quantitative manner.
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Affiliation(s)
- J Trasobares
- Institute of Electronics, Microelectronics and Nanotechnology, CNRS, University of Lille , Avenue Poincaré, BP60069, 59652, Villeneuve d'Ascq France
| | - J Rech
- Aix Marseille University, Universite de Toulon, CNRS, CPT , 163 Avenue de Luminy, 13288 Marseille cedex 9, France
| | - T Jonckheere
- Aix Marseille University, Universite de Toulon, CNRS, CPT , 163 Avenue de Luminy, 13288 Marseille cedex 9, France
| | - T Martin
- Aix Marseille University, Universite de Toulon, CNRS, CPT , 163 Avenue de Luminy, 13288 Marseille cedex 9, France
| | - O Aleveque
- Université d'Angers, CNRS UMR 6200, Laboratoire MOLTECH-Anjou , 2 bd Lavoisier, 49045 Angers cedex, France
| | - E Levillain
- Université d'Angers, CNRS UMR 6200, Laboratoire MOLTECH-Anjou , 2 bd Lavoisier, 49045 Angers cedex, France
| | - V Diez-Cabanes
- Laboratory for Chemistry of Novel Materials, University of Mons , Place du Parc 20, B-7000 Mons, Belgium
| | - Y Olivier
- Laboratory for Chemistry of Novel Materials, University of Mons , Place du Parc 20, B-7000 Mons, Belgium
| | - J Cornil
- Laboratory for Chemistry of Novel Materials, University of Mons , Place du Parc 20, B-7000 Mons, Belgium
| | - J P Nys
- Institute of Electronics, Microelectronics and Nanotechnology, CNRS, University of Lille , Avenue Poincaré, BP60069, 59652, Villeneuve d'Ascq France
| | - R Sivakumarasamy
- Institute of Electronics, Microelectronics and Nanotechnology, CNRS, University of Lille , Avenue Poincaré, BP60069, 59652, Villeneuve d'Ascq France
| | - K Smaali
- Institute of Electronics, Microelectronics and Nanotechnology, CNRS, University of Lille , Avenue Poincaré, BP60069, 59652, Villeneuve d'Ascq France
| | - P Leclere
- Laboratory for Chemistry of Novel Materials, University of Mons , Place du Parc 20, B-7000 Mons, Belgium
| | - A Fujiwara
- NTT Basic Research Laboratories, 3-1, Morinosato Wakamiya, Atsugi-shi, kanagawa 243-0198, Japan
| | - D Théron
- Institute of Electronics, Microelectronics and Nanotechnology, CNRS, University of Lille , Avenue Poincaré, BP60069, 59652, Villeneuve d'Ascq France
| | - D Vuillaume
- Institute of Electronics, Microelectronics and Nanotechnology, CNRS, University of Lille , Avenue Poincaré, BP60069, 59652, Villeneuve d'Ascq France
| | - N Clément
- Institute of Electronics, Microelectronics and Nanotechnology, CNRS, University of Lille , Avenue Poincaré, BP60069, 59652, Villeneuve d'Ascq France
- NTT Basic Research Laboratories, 3-1, Morinosato Wakamiya, Atsugi-shi, kanagawa 243-0198, Japan
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28
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Patel AN, Anne A, Chovin A, Demaille C, Grelet E, Michon T, Taofifenua C. Scaffolding of Enzymes on Virus Nanoarrays: Effects of Confinement and Virus Organization on Biocatalysis. SMALL (WEINHEIM AN DER BERGSTRASSE, GERMANY) 2017; 13:1603163. [PMID: 28098963 DOI: 10.1002/smll.201603163] [Citation(s) in RCA: 9] [Impact Index Per Article: 1.3] [Reference Citation Analysis] [Abstract] [Key Words] [MESH Headings] [Track Full Text] [Subscribe] [Scholar Register] [Received: 09/21/2016] [Revised: 11/18/2016] [Indexed: 06/06/2023]
Abstract
Organizing active enzyme molecules on nanometer-sized scaffolds is a promising strategy for designing highly efficient supported catalytic systems for biosynthetic and sensing applications. This is achieved by designing model nanoscale enzymatic platforms followed by thorough analysis of the catalytic activity. Herein, the virus fd bacteriophage is considered as an enzyme nanocarrier to study the scaffolding effects on enzymatic activity. Nanoarrays of randomly oriented, or directionally patterned, fd bacteriophage virus are functionalized with the enzyme glucose oxidase (GOx), using an immunological assembly strategy, directly on a gold electrode support. The scaffolding process on the virus capsid is monitored in situ by AFM (atomic force microscopy) imaging, while cyclic voltammetry is used to interrogate the catalytic activity of the resulting functional GOx-fd nanoarrays. Kinetic analysis reveals the ability to modulate the activity of GOx via nanocarrier patterning. The results evidence, for the first time, enhancement of the enzymatic activity due to scaffolding on a filamentous viral particle.
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Affiliation(s)
- Anisha N Patel
- Laboratoire d'Electrochimie Moléculaire, UMR 7591 CNRS, Université Paris Diderot, Sorbonne Paris Cité, 15 rue Jean-Antoine de Baïf, F-75205, Paris Cedex 13, France
| | - Agnès Anne
- Laboratoire d'Electrochimie Moléculaire, UMR 7591 CNRS, Université Paris Diderot, Sorbonne Paris Cité, 15 rue Jean-Antoine de Baïf, F-75205, Paris Cedex 13, France
| | - Arnaud Chovin
- Laboratoire d'Electrochimie Moléculaire, UMR 7591 CNRS, Université Paris Diderot, Sorbonne Paris Cité, 15 rue Jean-Antoine de Baïf, F-75205, Paris Cedex 13, France
| | - Christophe Demaille
- Laboratoire d'Electrochimie Moléculaire, UMR 7591 CNRS, Université Paris Diderot, Sorbonne Paris Cité, 15 rue Jean-Antoine de Baïf, F-75205, Paris Cedex 13, France
| | - Eric Grelet
- Centre de Recherche Paul-Pascal, UPR 8641 CNRS, Université de Bordeaux, 115 avenue Schweitzer, 33600, Pessac, France
| | - Thierry Michon
- Biologie du Fruit et Pathologie, UMR 1332 INRA, Université de Bordeaux, 71 avenue Edouard Bourlaux, CS20032, 33882, Villenave d'Ornon Cedex, France
| | - Cécilia Taofifenua
- Laboratoire d'Electrochimie Moléculaire, UMR 7591 CNRS, Université Paris Diderot, Sorbonne Paris Cité, 15 rue Jean-Antoine de Baïf, F-75205, Paris Cedex 13, France
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Takahashi Y, Kumatani A, Shiku H, Matsue T. Scanning Probe Microscopy for Nanoscale Electrochemical Imaging. Anal Chem 2016; 89:342-357. [DOI: 10.1021/acs.analchem.6b04355] [Citation(s) in RCA: 78] [Impact Index Per Article: 9.8] [Reference Citation Analysis] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Indexed: 12/14/2022]
Affiliation(s)
- Yasufumi Takahashi
- Division
of Electrical Engineering and Computer Science, Kanazawa University, Kanazawa 920-1192, Japan
- Precursory
Research for Embryonic Science and Technology (PRESTO), Japan Science and Technology Agency (JST), Saitama 332-0012, Japan
| | - Akichika Kumatani
- Advanced
Institute for Materials Research, Tohoku University, Sendai 980-8577, Japan
- Graduate
School of Environmental Studies, Tohoku University, Sendai 980-8579, Japan
| | - Hitoshi Shiku
- Department
of Applied Chemistry, Graduate School of Engineering, Tohoku University, Sendai 980-8579, Japan
| | - Tomokazu Matsue
- Advanced
Institute for Materials Research, Tohoku University, Sendai 980-8577, Japan
- Graduate
School of Environmental Studies, Tohoku University, Sendai 980-8579, Japan
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30
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Polcari D, Dauphin-Ducharme P, Mauzeroll J. Scanning Electrochemical Microscopy: A Comprehensive Review of Experimental Parameters from 1989 to 2015. Chem Rev 2016; 116:13234-13278. [PMID: 27736057 DOI: 10.1021/acs.chemrev.6b00067] [Citation(s) in RCA: 213] [Impact Index Per Article: 26.6] [Reference Citation Analysis] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Indexed: 02/08/2023]
Affiliation(s)
- David Polcari
- Department
of Chemistry, McGill University, 801 Sherbrooke Street West, Montreal, Quebec Canada, H3A 0B8
| | - Philippe Dauphin-Ducharme
- Department
of Chemistry, McGill University, 801 Sherbrooke Street West, Montreal, Quebec Canada, H3A 0B8
| | - Janine Mauzeroll
- Department
of Chemistry, McGill University, 801 Sherbrooke Street West, Montreal, Quebec Canada, H3A 0B8
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31
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Fan Y, Han C, Zhang B. Recent advances in the development and application of nanoelectrodes. Analyst 2016; 141:5474-87. [PMID: 27510555 DOI: 10.1039/c6an01285j] [Citation(s) in RCA: 36] [Impact Index Per Article: 4.5] [Reference Citation Analysis] [Abstract] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Indexed: 01/05/2023]
Abstract
Nanoelectrodes have key advantages compared to electrodes of conventional size and are the tool of choice for numerous applications in both fundamental electrochemistry research and bioelectrochemical analysis. This Minireview summarizes recent advances in the development, characterization, and use of nanoelectrodes in nanoscale electroanalytical chemistry. Methods of nanoelectrode preparation include laser-pulled glass-sealed metal nanoelectrodes, mass-produced nanoelectrodes, carbon nanotube based and carbon-filled nanopipettes, and tunneling nanoelectrodes. Several new topics of their recent application are covered, which include the use of nanoelectrodes for electrochemical imaging at ultrahigh spatial resolution, imaging with nanoelectrodes and nanopipettes, electrochemical analysis of single cells, single enzymes, and single nanoparticles, and the use of nanoelectrodes to understand single nanobubbles.
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Affiliation(s)
- Yunshan Fan
- Department of Chemistry, University of Washington, Seattle, Washington 98115, USA.
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32
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Blanchard PY, Sun T, Yu Y, Wei Z, Matsui H, Mirkin MV. Scanning Electrochemical Microscopy Study of Permeability of a Thiolated Aryl Multilayer and Imaging of Single Nanocubes Anchored to It. LANGMUIR : THE ACS JOURNAL OF SURFACES AND COLLOIDS 2016; 32:2500-8. [PMID: 26925511 PMCID: PMC6442464 DOI: 10.1021/acs.langmuir.5b03858] [Citation(s) in RCA: 31] [Impact Index Per Article: 3.9] [Reference Citation Analysis] [Abstract] [MESH Headings] [Grants] [Track Full Text] [Subscribe] [Scholar Register] [Indexed: 05/13/2023]
Abstract
Electroreduction of diazonium salts is a widely used technique for grafting organic films on various surfaces. In this paper, scanning electrochemical microscopy (SECM) was used for high-resolution characterization of a thiolated aryl multilayer film obtained by electrografting of thiophenol diazonium on highly ordered pyrolytic graphite (HOPG). The blocking properties of the film were evaluated, and the origins of incomplete surface passivation were elucidated by comparing current-distance curves and surface reactivity maps obtained with nanometer- and micrometer-sized tips. In this way, one can distinguish between different pathways of charge transport in the film, e.g., pinhole defects versus rate-limiting charge transfer through the film. Pd nanocubes were anchored to the film by thiol groups and imaged by SECM. The applicability of SECM to in situ visualization of the geometry of non-spherical nanoparticles has been demonstrated.
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Affiliation(s)
- Pierre-Yves Blanchard
- Department of Chemistry and Biochemistry, Queens College and the Graduate Center, City University of New York (CUNY), Flushing, New York 11367, United States
| | - Tong Sun
- Department of Chemistry and Biochemistry, Queens College and the Graduate Center, City University of New York (CUNY), Flushing, New York 11367, United States
| | - Yun Yu
- Department of Chemistry and Biochemistry, Queens College and the Graduate Center, City University of New York (CUNY), Flushing, New York 11367, United States
| | - Zengyan Wei
- Department of Chemistry and Biochemistry, Hunter College and the Graduate Center, City University of New York (CUNY), New York, New York 10021, United States
| | - Hiroshi Matsui
- Department of Chemistry and Biochemistry, Hunter College and the Graduate Center, City University of New York (CUNY), New York, New York 10021, United States
- Department of Biochemistry, Weill Medical College of Cornell University, New York, New York 10021, United States
- Corresponding Authors:.
| | - Michael V. Mirkin
- Department of Chemistry and Biochemistry, Queens College and the Graduate Center, City University of New York (CUNY), Flushing, New York 11367, United States
- Corresponding Authors:.
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Affiliation(s)
- Stephen M. Oja
- Department of Chemistry, University of Washington, Seattle, Washington 98195-1700, United States
| | - Yunshan Fan
- Department of Chemistry, University of Washington, Seattle, Washington 98195-1700, United States
| | - Chadd M. Armstrong
- Department of Chemistry, University of Washington, Seattle, Washington 98195-1700, United States
| | - Peter Defnet
- Department of Chemistry, University of Washington, Seattle, Washington 98195-1700, United States
| | - Bo Zhang
- Department of Chemistry, University of Washington, Seattle, Washington 98195-1700, United States
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