1
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Queiroz MH, Santos SA, Sampaio BS, Alves TV, Rivelino R. A theoretical study of the photochemistry of 1,3-cyclopentadiene and its cyano derivatives bound to a water dimer: Assessing reactivity of ionized clusters and possible photoproducts. SPECTROCHIMICA ACTA. PART A, MOLECULAR AND BIOMOLECULAR SPECTROSCOPY 2024; 320:124637. [PMID: 38878722 DOI: 10.1016/j.saa.2024.124637] [Citation(s) in RCA: 0] [Impact Index Per Article: 0] [Reference Citation Analysis] [Abstract] [Key Words] [Track Full Text] [Subscribe] [Scholar Register] [Received: 04/15/2024] [Revised: 05/31/2024] [Accepted: 06/08/2024] [Indexed: 07/08/2024]
Abstract
We theoretically investigate the photoionization scenarios of molecular complexes involving cyclopentadiene and cyanocyclopentadiene bound to water dimers. Using electronic structure calculations within density-functional theory (DFT) and time dependent DFT (TD-DFT), we explore the potential photochemical pathways following ionization, and determine the charge transfer excitations related to the possible subsequent reactions. Our findings suggest that the investigated photochemical pathways of the hydrated complexes take place in two well-defined ultraviolet regions: (i) 8.2-9.5 eV for the cyclic compounds and (ii) 11.2-11.4 eV for the bound water dimer. We quantify how H-bonding effects can influence the photoionization channels. Before forming possible photoproducts, we also examine the regiospecificity of OH addition to 1,3-cyclopentadiene and its cyano derivatives We analyze our results in light of photoionization studies of jet-cooled molecular complexes and possible implications in astrochemical environments.
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Affiliation(s)
- Murillo H Queiroz
- Departamento de Físico-Química, Instituto de Química, Universidade Federal da Bahia, Rua Barão de Jeremoabo 147, 40170-115 Salvador, Bahia, Brazil.
| | - Suelen A Santos
- Departamento de Físico-Química, Instituto de Química, Universidade Federal da Bahia, Rua Barão de Jeremoabo 147, 40170-115 Salvador, Bahia, Brazil
| | - Bruno S Sampaio
- Departamento de Físico-Química, Instituto de Química, Universidade Federal da Bahia, Rua Barão de Jeremoabo 147, 40170-115 Salvador, Bahia, Brazil
| | - Tiago V Alves
- Departamento de Físico-Química, Instituto de Química, Universidade Federal da Bahia, Rua Barão de Jeremoabo 147, 40170-115 Salvador, Bahia, Brazil
| | - Roberto Rivelino
- Instituto de Física, Universidade Federal da Bahia, 40210-340 Salvador, Bahia, Brazil
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2
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Hu Y, Zhu Y, Lai Y, Wang S, Xu Y. Examination of Nafion membrane performance with acid-base functionalized graphene oxide. Phys Chem Chem Phys 2024; 26:20919-20927. [PMID: 39045818 DOI: 10.1039/d4cp01526f] [Citation(s) in RCA: 0] [Impact Index Per Article: 0] [Reference Citation Analysis] [Abstract] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Indexed: 07/25/2024]
Abstract
Functionalized graphene oxide (GO) as a good additive can improve the performance of proton exchange membrane (PEM) via the introduction of various functional groups. How to balance the proton conductivity and durability of membrane based on functionalized GO is a key issue. In this work, benzoic-acid-functionalized GO(BAF-GO) and 1,2,4-triazole-functionalized GO(TF-GO) are employed as doping candidates, and the co-doping effect on membrane performance is investigated by means of experiment and molecular dynamics simulation. Meanwhile, the quantum chemistry method is implemented to explore the interaction between TF-GO, membrane and BAF-GO. The results reveal that the composite membrane exhibits high durability and enhanced proton conductivity. When the doping mass ratio of BAF-GO to TF-GO is 3 : 1, the proton conductivity can be greatly improved, especially under low-humidity conditions. Excessive addition of basic groups does not enhance proton transport.
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Affiliation(s)
- Yu Hu
- School of Energy Science and Engineering, Harbin Institute of Technology, Harbin, 150001, China.
| | - Yaochen Zhu
- School of Energy Science and Engineering, Harbin Institute of Technology, Harbin, 150001, China.
| | - Yuhua Lai
- School of Energy Science and Engineering, Harbin Institute of Technology, Harbin, 150001, China.
| | - Shuai Wang
- School of Energy Science and Engineering, Harbin Institute of Technology, Harbin, 150001, China.
| | - Yao Xu
- School of Automotive and Transportation Engineering, Hefei University of Technology, Hefei, Anhui, 230009, China
- Anhui Conch Group Co. Ltd, Wuhu, Anhui, 241000, China
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3
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Ramanthrikkovil Variyam A, Rzycki M, Yucknovsky A, Stuchebrukhov AA, Drabik D, Amdursky N. Proton diffusion on the surface of mixed lipid membranes highlights the role of membrane composition. Biophys J 2024:S0006-3495(24)00441-7. [PMID: 38961623 DOI: 10.1016/j.bpj.2024.07.002] [Citation(s) in RCA: 0] [Impact Index Per Article: 0] [Reference Citation Analysis] [Abstract] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Received: 03/27/2024] [Revised: 06/13/2024] [Accepted: 07/01/2024] [Indexed: 07/05/2024] Open
Abstract
Proton circuits within biological membranes, the foundation of natural bioenergetic systems, are significantly influenced by the lipid compositions of different biological membranes. In this study, we investigate the influence of mixed lipid membrane composition on the proton transfer (PT) properties on the surface of the membrane. We track the excited-state PT (ESPT) process from a tethered probe to the membrane with timescales and length scales of PT relevant to bioenergetic systems. Two processes can happen during ESPT: the initial PT from the probe to the membrane at short timescales, followed by diffusion of dissociated protons around the probe on the membrane, and the possible geminate recombination with the probe at longer timescales. Here, we use membranes composed of mixtures of phosphatidylcholine (PC) and phosphatidic acid (PA). We show that the changes in the ESPT properties are not monotonous with the concentration of the lipid mixture; at a low concentration of PA in PC, we find that the membrane is a poor proton acceptor. Molecular dynamics simulations indicate that the membrane is more structured at this specific lipid mixture, with the least number of defects. Accordingly, we suggest that the structure of the membrane is an important factor in facilitating PT. We further show that the composition of the membrane affects the geminate proton diffusion around the probe, whereas, on a timescale of tens of nanoseconds, the dissociated proton is mostly lateral restricted to the membrane plane in PA membranes, while in PC, the diffusion is less restricted by the membrane.
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Affiliation(s)
| | - Mateusz Rzycki
- Department of Biomedical Engineering, Wroclaw University of Science and Technology, Wroclaw, Poland
| | - Anna Yucknovsky
- Schulich Faculty of Chemistry, Technion - Israel Institute of Technology, Haifa, Israel
| | | | - Dominik Drabik
- Department of Biomedical Engineering, Wroclaw University of Science and Technology, Wroclaw, Poland
| | - Nadav Amdursky
- Schulich Faculty of Chemistry, Technion - Israel Institute of Technology, Haifa, Israel.
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4
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Butin O, Pereyaslavets L, Kamath G, Illarionov A, Sakipov S, Kurnikov IV, Voronina E, Ivahnenko I, Leontyev I, Nawrocki G, Darkhovskiy M, Olevanov M, Cherniavskyi YK, Lock C, Greenslade S, Kornberg RD, Levitt M, Fain B. The Determination of Free Energy of Hydration of Water Ions from First Principles. J Chem Theory Comput 2024; 20:5215-5224. [PMID: 38842599 DOI: 10.1021/acs.jctc.3c01411] [Citation(s) in RCA: 0] [Impact Index Per Article: 0] [Reference Citation Analysis] [Abstract] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Indexed: 06/07/2024]
Abstract
We model the autoionization of water by determining the free energy of hydration of the major intermediate species of water ions. We represent the smallest ions─the hydroxide ion OH-, the hydronium ion H3O+, and the Zundel ion H5O2+─by bonded models and the more extended ionic structures by strong nonbonded interactions (e.g., the Eigen H9O4+ = H3O+ + 3(H2O) and the Stoyanov H13O6+ = H5O2+ + 4(H2O)). Our models are faithful to the precise QM energies and their components to within 1% or less. Using the calculated free energies and atomization energies, we compute the pKa of pure water from first principles as a consistency check and arrive at a value within 1.3 log units of the experimental one. From these calculations, we conclude that the hydronium ion, and its hydrated state, the Eigen cation, are the dominant species in the water autoionization process.
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Affiliation(s)
- Oleg Butin
- InterX, Inc. (a subsidiary of NeoTX Therapeutics, Ltd.), 805 Allston Way, Berkeley, California 94710, United States
| | - Leonid Pereyaslavets
- InterX, Inc. (a subsidiary of NeoTX Therapeutics, Ltd.), 805 Allston Way, Berkeley, California 94710, United States
| | - Ganesh Kamath
- InterX, Inc. (a subsidiary of NeoTX Therapeutics, Ltd.), 805 Allston Way, Berkeley, California 94710, United States
| | - Alexey Illarionov
- InterX, Inc. (a subsidiary of NeoTX Therapeutics, Ltd.), 805 Allston Way, Berkeley, California 94710, United States
| | - Serzhan Sakipov
- InterX, Inc. (a subsidiary of NeoTX Therapeutics, Ltd.), 805 Allston Way, Berkeley, California 94710, United States
| | - Igor V Kurnikov
- InterX, Inc. (a subsidiary of NeoTX Therapeutics, Ltd.), 805 Allston Way, Berkeley, California 94710, United States
| | - Ekaterina Voronina
- InterX, Inc. (a subsidiary of NeoTX Therapeutics, Ltd.), 805 Allston Way, Berkeley, California 94710, United States
- Skobeltsyn Institute of Nuclear Physics, Lomonosov Moscow State University, Moscow 119991, Russia
| | - Ilya Ivahnenko
- InterX, Inc. (a subsidiary of NeoTX Therapeutics, Ltd.), 805 Allston Way, Berkeley, California 94710, United States
| | - Igor Leontyev
- InterX, Inc. (a subsidiary of NeoTX Therapeutics, Ltd.), 805 Allston Way, Berkeley, California 94710, United States
| | - Grzegorz Nawrocki
- InterX, Inc. (a subsidiary of NeoTX Therapeutics, Ltd.), 805 Allston Way, Berkeley, California 94710, United States
| | - Mikhail Darkhovskiy
- InterX, Inc. (a subsidiary of NeoTX Therapeutics, Ltd.), 805 Allston Way, Berkeley, California 94710, United States
| | - Michael Olevanov
- InterX, Inc. (a subsidiary of NeoTX Therapeutics, Ltd.), 805 Allston Way, Berkeley, California 94710, United States
- Department of Physics, Lomonosov Moscow State University, Moscow 119991, Russia
| | - Yevhen K Cherniavskyi
- InterX, Inc. (a subsidiary of NeoTX Therapeutics, Ltd.), 805 Allston Way, Berkeley, California 94710, United States
| | - Christopher Lock
- InterX, Inc. (a subsidiary of NeoTX Therapeutics, Ltd.), 805 Allston Way, Berkeley, California 94710, United States
- Department of Neurology and Neurological Sciences, Stanford University School of Medicine, Palo Alto, California 94304, United States
| | - Sean Greenslade
- InterX, Inc. (a subsidiary of NeoTX Therapeutics, Ltd.), 805 Allston Way, Berkeley, California 94710, United States
| | - Roger D Kornberg
- Department of Structural Biology, Stanford University School of Medicine, Stanford, California 94305, United States
| | - Michael Levitt
- Department of Structural Biology, Stanford University School of Medicine, Stanford, California 94305, United States
| | - Boris Fain
- InterX, Inc. (a subsidiary of NeoTX Therapeutics, Ltd.), 805 Allston Way, Berkeley, California 94710, United States
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5
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Kaiser S, Yue Z, Peng Y, Nguyen TD, Chen S, Teng D, Voth GA. Molecular Dynamics Simulation of Complex Reactivity with the Rapid Approach for Proton Transport and Other Reactions (RAPTOR) Software Package. J Phys Chem B 2024; 128:4959-4974. [PMID: 38742764 PMCID: PMC11129700 DOI: 10.1021/acs.jpcb.4c01987] [Citation(s) in RCA: 0] [Impact Index Per Article: 0] [Reference Citation Analysis] [Abstract] [Grants] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Received: 03/26/2024] [Revised: 05/05/2024] [Accepted: 05/06/2024] [Indexed: 05/16/2024]
Abstract
Simulating chemically reactive phenomena such as proton transport on nanosecond to microsecond and beyond time scales is a challenging task. Ab initio methods are unable to currently access these time scales routinely, and traditional molecular dynamics methods feature fixed bonding arrangements that cannot account for changes in the system's bonding topology. The Multiscale Reactive Molecular Dynamics (MS-RMD) method, as implemented in the Rapid Approach for Proton Transport and Other Reactions (RAPTOR) software package for the LAMMPS molecular dynamics code, offers a method to routinely sample longer time scale reactive simulation data with statistical precision. RAPTOR may also be interfaced with enhanced sampling methods to drive simulations toward the analysis of reactive rare events, and a number of collective variables (CVs) have been developed to facilitate this. Key advances to this methodology, including GPU acceleration efforts and novel CVs to model water wire formation are reviewed, along with recent applications of the method which demonstrate its versatility and robustness.
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Affiliation(s)
- Scott Kaiser
- Department
of Chemistry, Chicago Center for Theoretical Chemistry, James Franck
Institute, and Institute for Biophysical Dynamics, The University of Chicago, Chicago, Illinois 60637, United States
| | - Zhi Yue
- Department
of Chemistry, Chicago Center for Theoretical Chemistry, James Franck
Institute, and Institute for Biophysical Dynamics, The University of Chicago, Chicago, Illinois 60637, United States
| | - Yuxing Peng
- NVIDIA
Corporation, Santa
Clara, California 95051, United States
| | - Trung Dac Nguyen
- Research
Computing Center, The University of Chicago, Chicago, Illinois 60637, United States
| | - Sijia Chen
- Department
of Chemistry, Chicago Center for Theoretical Chemistry, James Franck
Institute, and Institute for Biophysical Dynamics, The University of Chicago, Chicago, Illinois 60637, United States
| | - Da Teng
- Department
of Chemistry, Chicago Center for Theoretical Chemistry, James Franck
Institute, and Institute for Biophysical Dynamics, The University of Chicago, Chicago, Illinois 60637, United States
| | - Gregory A. Voth
- Department
of Chemistry, Chicago Center for Theoretical Chemistry, James Franck
Institute, and Institute for Biophysical Dynamics, The University of Chicago, Chicago, Illinois 60637, United States
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6
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Katke C, Korevaar PA, Kaplan CN. Diffusiophoretic Fast Swelling of Chemically Responsive Hydrogels. PHYSICAL REVIEW LETTERS 2024; 132:208201. [PMID: 38829102 DOI: 10.1103/physrevlett.132.208201] [Citation(s) in RCA: 0] [Impact Index Per Article: 0] [Reference Citation Analysis] [Abstract] [Track Full Text] [Subscribe] [Scholar Register] [Received: 09/08/2023] [Accepted: 04/01/2024] [Indexed: 06/05/2024]
Abstract
Acid-induced release of stored ions from polyacrylic acid hydrogels (with a free surface fully permeable to the ion and acid) was observed to increase the gel osmotic pressure that leads to rapid swelling faster than the characteristic solvent absorption rate of the gel. The subsequent equilibration of the diffusing ion concentration across the gel surface diminishes the osmotic pressure. Then, the swollen gel contracts, thereby completing one actuation cycle. We develop a continuum poroelastic theory that explains the experiments by introducing a "gel diffusiophoresis" mechanism: Steric repulsion between the gel polymers and released ions can induce a diffusio-osmotic solvent intake counteracted by the diffusiophoretic expansion of the gel network that ceases when the ion gradient vanishes. For applications ranging from drug delivery to soft robotics, engineering the gel diffusiophoresis may enable stimuli-responsive hydrogels with amplified strain rates and power output.
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Affiliation(s)
- Chinmay Katke
- Department of Physics, Virginia Polytechnic Institute and State University, Blacksburg, Virginia 24061, USA
- Center for Soft Matter and Biological Physics, Virginia Polytechnic Institute and State University, Blacksburg, Virginia 24061, USA
| | - Peter A Korevaar
- Institute for Molecules and Materials, Radboud University, 6525 AJ Nijmegen, The Netherlands
| | - C Nadir Kaplan
- Department of Physics, Virginia Polytechnic Institute and State University, Blacksburg, Virginia 24061, USA
- Center for Soft Matter and Biological Physics, Virginia Polytechnic Institute and State University, Blacksburg, Virginia 24061, USA
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7
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Kacenauskaite L, Moncada Cohen M, Van Wyck SJ, Fayer MD. Fast Structural Dynamics in Concentrated HCl Solutions: From Proton Hopping to the Bulk Viscosity. J Am Chem Soc 2024; 146:12355-12364. [PMID: 38682723 DOI: 10.1021/jacs.3c11620] [Citation(s) in RCA: 0] [Impact Index Per Article: 0] [Reference Citation Analysis] [Abstract] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Indexed: 05/01/2024]
Abstract
Concentrated acid solutions, particularly HCl, have been studied extensively to examine the proton hopping and infrared spectral signatures of hydronium ions. Much less attention has been given to the structural dynamics of concentrated HCl solutions. Here, we apply optical heterodyne detected-optical Kerr effect (OHD-OKE) measurements to examine HCl concentration-dependent dynamics from moderate (0.8 m) to very high (15.5 m) concentrations and compare the results to the dynamics of NaCl solutions, as Na+ is similar in size to the hydronium cation. Both HCl and NaCl OHD-OKE signals decay as triexponentials at all concentrations, in contrast to pure water, which decays as a biexponential. Two remarkable features of the HCl dynamics are the following: (1) the bulk viscosity is linearly related to the slowest decay constant, t3, and (2) the concentration-dependent proton hopping times, determined by ab initio MD simulations and 2D IR chemical exchange experiments, both obtained from the literature, fall on the same line as the slowest structural dynamics relaxation time, t3, within experimental error. The structural dynamics of hydronium/chloride/water clusters, with relaxation times t3, are responsible for the concentration dependence of microscopic property of proton hopping and the macroscopic bulk viscosity. The slowest time constant (t3), which does not have a counterpart in pure water, is 3 ps at 0.8 m and increases by a factor of ∼2 by 15.5 m. The two fastest HCl decay constants, t1 and t2, are similar to those of pure water and increase mildly with the concentration.
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Affiliation(s)
- Laura Kacenauskaite
- Department of Chemistry, Stanford University, Stanford, California 94305, United States
- Nano-Science Center & Department of Chemistry, University of Copenhagen, Copenhagen 2100, Denmark
| | - Max Moncada Cohen
- Department of Chemistry, Stanford University, Stanford, California 94305, United States
| | - Stephen J Van Wyck
- Department of Chemistry, Stanford University, Stanford, California 94305, United States
| | - Michael D Fayer
- Department of Chemistry, Stanford University, Stanford, California 94305, United States
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8
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Zhang Z, Cui R, Jiang X, Yu C, Zhou Y. Effect of ionic groups on the morphology and transport properties in a novel perfluorinated ionomer containing sulfonic and phosphonic acid groups: a molecular dynamics study. Phys Chem Chem Phys 2024; 26:12806-12819. [PMID: 38619877 DOI: 10.1039/d4cp00962b] [Citation(s) in RCA: 0] [Impact Index Per Article: 0] [Reference Citation Analysis] [Abstract] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Indexed: 04/17/2024]
Abstract
Combining the phosphonic acid group with the sulfonic acid group in PEMs has been shown to be an effective strategy for improving the fuel cell performance. However, the interplay of two different ionic groups and the resulting effect on the membrane properties have not been fully elucidated. Here, we used classical molecular dynamics simulation to investigate the morphologies, transport properties and effects of ionic groups in a novel perfluorinated PEM containing two ionic groups (PFSA-PFPA) in comparison to the corresponding homopolymers. Phase separations between hydrophilic and hydrophobic domains are confirmed in these PEMs and result from the evolution of water clusters formed around the ionic groups. The combination of both ionic groups brings a complicated morphological feature in PFSA-PFPA, with near-cylindrical aqueous domains of large length scales interconnected by tortuous domains of small sizes. And we found that the self-diffusion coefficients of water molecules are strongly related to morphologies, with the water transport in PFSA-PFPA lying between two analogous homopolymers. At the molecular level, we found that the sulfonic and phosphonic acid groups have distinct effects on the coordination behaviors and the dynamics of water molecules and hydronium ions. Strong electrostatic interactions lead to compact coordination structures and sluggish dynamics of hydronium ions around phosphonic acid groups, which determine the morphological evolution and transport properties in PFSA-PFPA. Our study affords insights into the relationship between molecular characteristics and transport properties bridged by phase-separated morphologies in a novel PEM containing both sulfonic acid and phosphonic acid groups, which deepens the understanding of the interplay between two ionic groups and may inspire the rational design of high-performance PEMs.
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Affiliation(s)
- Zongwei Zhang
- School of Chemistry & Chemical Engineering, Frontiers Science Center for Transformative Molecules, Shanghai Key Laboratory of Electrical Insulation and Thermal Aging, Shanghai Jiao Tong University, 800 Dongchuan Road, Shanghai, 200240, China.
| | - Rui Cui
- School of Chemistry & Chemical Engineering, Frontiers Science Center for Transformative Molecules, Shanghai Key Laboratory of Electrical Insulation and Thermal Aging, Shanghai Jiao Tong University, 800 Dongchuan Road, Shanghai, 200240, China.
| | - Xuesong Jiang
- School of Chemistry & Chemical Engineering, Frontiers Science Center for Transformative Molecules, Shanghai Key Laboratory of Electrical Insulation and Thermal Aging, Shanghai Jiao Tong University, 800 Dongchuan Road, Shanghai, 200240, China.
- Key Laboratory of Green and High-end Utilization of Salt Lake Resources, Chinese Academy of Sciences, China
| | - Chunyang Yu
- School of Chemistry & Chemical Engineering, Frontiers Science Center for Transformative Molecules, Shanghai Key Laboratory of Electrical Insulation and Thermal Aging, Shanghai Jiao Tong University, 800 Dongchuan Road, Shanghai, 200240, China.
- Key Laboratory of Green and High-end Utilization of Salt Lake Resources, Chinese Academy of Sciences, China
| | - Yongfeng Zhou
- School of Chemistry & Chemical Engineering, Frontiers Science Center for Transformative Molecules, Shanghai Key Laboratory of Electrical Insulation and Thermal Aging, Shanghai Jiao Tong University, 800 Dongchuan Road, Shanghai, 200240, China.
- Key Laboratory of Green and High-end Utilization of Salt Lake Resources, Chinese Academy of Sciences, China
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9
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Fidalgo-Marijuan A, Ruiz de Larramendi I, Barandika G. Superprotonic Conductivity in a Metalloporphyrin-Based SMOF (Supramolecular Metal-Organic Framework). NANOMATERIALS (BASEL, SWITZERLAND) 2024; 14:398. [PMID: 38470729 PMCID: PMC10934030 DOI: 10.3390/nano14050398] [Citation(s) in RCA: 0] [Impact Index Per Article: 0] [Reference Citation Analysis] [Abstract] [Key Words] [Track Full Text] [Subscribe] [Scholar Register] [Received: 01/29/2024] [Revised: 02/16/2024] [Accepted: 02/19/2024] [Indexed: 03/14/2024]
Abstract
Metal-organic frameworks and supramolecular metal-organic frameworks (SMOFs) exhibit great potential for a broad range of applications taking advantage of the high surface area and pore sizes and tunable chemistry. In particular, metalloporphyrin-based MOFs and SMOFs are becoming of great importance in many fields due to the bioessential functions of these macrocycles that are being mimicked. On the other hand, during the last years, proton-conducting materials have aroused much interest, and those presenting high conductivity values are potential candidates to play a key role in some solid-state electrochemical devices such as batteries and fuel cells. In this way, using metalloporphyrins as building units we have obtained a new crystalline material with formula [H(bipy)]2[(MnTPPS)(H2O)2]·2bipy·14H2O, where bipy is 4,4'-bipyidine and TPPS4- is the meso-tetra(4-sulfonatephenyl) porphyrin. The crystal structure shows a zig-zag water chain along the [100] direction located between the sulfonate groups of the porphyrin. Taking into account those structural features, the compound was tested for proton conduction by complex electrochemical impedance spectroscopy (EIS). The as-obtained conductivity is 1 × 10-2 S·cm-1 at 40 °C and 98% relative humidity, which is a remarkably high value.
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Affiliation(s)
- Arkaitz Fidalgo-Marijuan
- Department of Organic and Inorganic Chemistry, University of the Basque Country (UPV/EHU), Barrio Sarriena s/n, 48940 Leioa, Spain;
- BCMaterials, Basque Center for Materials, Applications and Nanostructures, Barrio Sarriena s/n, 48940 Leioa, Spain
| | - Idoia Ruiz de Larramendi
- Department of Organic and Inorganic Chemistry, University of the Basque Country (UPV/EHU), Barrio Sarriena s/n, 48940 Leioa, Spain;
| | - Gotzone Barandika
- Department of Organic and Inorganic Chemistry, University of the Basque Country (UPV/EHU), Barrio Sarriena s/n, 48940 Leioa, Spain;
- BCMaterials, Basque Center for Materials, Applications and Nanostructures, Barrio Sarriena s/n, 48940 Leioa, Spain
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10
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Palma Banos M, Popov AV, Hernandez R. Representability and Dynamical Consistency in Coarse-Grained Models. J Phys Chem B 2024; 128:1506-1514. [PMID: 38315661 DOI: 10.1021/acs.jpcb.3c08054] [Citation(s) in RCA: 0] [Impact Index Per Article: 0] [Reference Citation Analysis] [Abstract] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Indexed: 02/07/2024]
Abstract
We address the challenge of representativity and dynamical consistency when unbonded fine-grained particles are collected together into coarse-grained particles. We implement a hybrid procedure for identifying and tracking the underlying fine-grained particles─e.g., atoms or molecules─by exchanging them between the coarse-grained particles periodically at a characteristic time. The exchange involves a back-mapping of the coarse-grained particles into fine-grained particles and a subsequent reassignment to coarse-grained particles conserving total mass and momentum. We find that an appropriate choice of the characteristic exchange time can lead to the correct effective diffusion rate of the fine-grained particles when simulated in hybrid coarse-grained dynamics. In the compressed (supercritical) fluid regime, without the exchange term, fine-grained particles remain associated with a given coarse-grained particle, leading to substantially lower diffusion rates than seen in all-atom molecular dynamics of the fine-grained particles. Thus, this work confirms the need for addressing the representativity of fine-grained particles within coarse-grained particles and offers a simple exchange mechanism so as to retain dynamical consistency between the fine- and coarse-grained scales.
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Affiliation(s)
- Manuel Palma Banos
- Department of Chemistry, Johns Hopkins University, Baltimore, Maryland 21218, United States
| | - Alexander V Popov
- Department of Chemistry, Johns Hopkins University, Baltimore, Maryland 21218, United States
| | - Rigoberto Hernandez
- Department of Chemistry, Johns Hopkins University, Baltimore, Maryland 21218, United States
- Department of Chemical & Biomolecular Engineering, Johns Hopkins University, Baltimore, Maryland 21218, United States
- Department of Materials Science & Engineering, Johns Hopkins University, Baltimore, Maryland 21218, United States
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11
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Ramanthrikkovil Variyam A, Stolov M, Feng J, Amdursky N. Solid-State Molecular Protonics Devices of Solid-Supported Biological Membranes Reveal the Mechanism of Long-Range Lateral Proton Transport. ACS NANO 2024; 18:5101-5112. [PMID: 38314693 PMCID: PMC10867892 DOI: 10.1021/acsnano.3c11990] [Citation(s) in RCA: 0] [Impact Index Per Article: 0] [Reference Citation Analysis] [Abstract] [Key Words] [MESH Headings] [Grants] [Track Full Text] [Subscribe] [Scholar Register] [Received: 11/30/2023] [Revised: 01/27/2024] [Accepted: 01/30/2024] [Indexed: 02/07/2024]
Abstract
Lateral proton transport (PT) on the surface of biological membranes is a fundamental biochemical process in the bioenergetics of living cells, but a lack of available experimental techniques has resulted in a limited understanding of its mechanism. Here, we present a molecular protonics experimental approach to investigate lateral PT across membranes by measuring long-range (70 μm) lateral proton conduction via a few layers of lipid bilayers in a solid-state-like environment, i.e., without having bulk water surrounding the membrane. This configuration enables us to focus on lateral proton conduction across the surface of the membrane while decoupling it from bulk water. Hence, by controlling the relative humidity of the environment, we can directly explore the role of water in the lateral PT process. We show that proton conduction is dependent on the number of water molecules and their structure and on membrane composition, where we explore the role of the headgroup, the tail saturation, the membrane phase, and membrane fluidity. The measured PT as a function of temperature shows an inverse temperature dependency, which we explain by the desorption and adsorption of water molecules into the solid membrane platform. We explain our findings by discussing the role of percolating hydrogen bonding within the membrane structure in a Grotthuss-like mechanism.
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Affiliation(s)
| | - Mikhail Stolov
- Wolfson
Department of Chemical Engineering, Technion
− Israel Institute of Technology, Haifa 3200003, Israel
| | - Jiajun Feng
- Schulich
Faculty of Chemistry, Technion −
Israel Institute of Technology, Haifa 3200003, Israel
| | - Nadav Amdursky
- Schulich
Faculty of Chemistry, Technion −
Israel Institute of Technology, Haifa 3200003, Israel
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12
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Zhou X, Huang Z, He X. Diffusion Monte Carlo method for barrier heights of multiple proton exchanges and complexation energies in small water, ammonia, and hydrogen fluoride clusters. J Chem Phys 2024; 160:054103. [PMID: 38310472 DOI: 10.1063/5.0182164] [Citation(s) in RCA: 0] [Impact Index Per Article: 0] [Reference Citation Analysis] [Abstract] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Received: 10/18/2023] [Accepted: 01/09/2024] [Indexed: 02/05/2024] Open
Abstract
Proton exchange reactions are of key importance in many processes in water. However, it is nontrivial to achieve reliable barrier heights for multiple proton exchanges and complexation energies in hydrogen-bonded systems theoretically. Performance of the fixed-node diffusion quantum Monte Carlo (FN-DMC) with the single-Slater-Jastrow trial wavefunction on total energies, barrier heights of multiple proton exchanges, and complexation energies of small water, ammonia, and hydrogen fluoride clusters is investigated in this study. Effects of basis sets and those of locality approximation (LA), T-move approximation (T-move), and determinant localization approximation (DLA) schemes in dealing with the nonlocal part of pseudopotentials on FN-DMC results are evaluated. According to our results, diffuse basis functions are important in achieving reliable barrier heights and complexation energies with FN-DMC, although the cardinal number of the basis set is more important than diffuse basis functions on total energies of these systems. Our results also show that the time step bias with DLA and LA is smaller than T-move; however, the time step bias of DMC energies with respect to time steps using the T-move is roughly linear up to 0.06 a.u., while this is not the case with LA and DLA. Barrier heights and complexation energies with FN-DMC using these three schemes are always within chemical accuracy. Taking into account the fact that T-move and DLA are typically more stable than LA, FN-DMC calculations with the T-move or DLA scheme and basis sets containing diffuse basis functions are suggested for barrier heights of multiple proton exchanges and complexation energies of hydrogen-bonded clusters.
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Affiliation(s)
- Xiaojun Zhou
- Shanghai Engineering Research Center of Molecular Therapeutics and New Drug Development, Shanghai Frontiers Science Center of Molecule Intelligent Syntheses, School of Chemistry and Molecular Engineering, East China Normal University, Shanghai 200062, People's Republic of China
- School of Physics & Information Science, Shaanxi University of Science and Technology, Xi'an 710021, People's Republic of China
| | - Zhiru Huang
- Institute of Atomic and Molecular Physics, Key Laboratory of High Energy Density Physics and Technology, Ministry of Education, Sichuan University, Chengdu, People's Republic of China
| | - Xiao He
- Shanghai Engineering Research Center of Molecular Therapeutics and New Drug Development, Shanghai Frontiers Science Center of Molecule Intelligent Syntheses, School of Chemistry and Molecular Engineering, East China Normal University, Shanghai 200062, People's Republic of China
- Chongqing Key Laboratory of Precision Optics, Chongqing Institute of East China Normal University, Chongqing 401120, People's Republic of China
- New York University-East China Normal University Center for Computational Chemistry, New York University Shanghai, Shanghai 200062, People's Republic of China
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13
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Struts AV, Barmasov AV, Fried SDE, Hewage KSK, Perera SMDC, Brown MF. Osmotic stress studies of G-protein-coupled receptor rhodopsin activation. Biophys Chem 2024; 304:107112. [PMID: 37952496 DOI: 10.1016/j.bpc.2023.107112] [Citation(s) in RCA: 0] [Impact Index Per Article: 0] [Reference Citation Analysis] [Abstract] [Key Words] [MESH Headings] [Grants] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Received: 05/06/2023] [Revised: 09/22/2023] [Accepted: 09/24/2023] [Indexed: 11/14/2023]
Abstract
We summarize and critically review osmotic stress studies of the G-protein-coupled receptor rhodopsin. Although small amounts of structural water are present in these receptors, the effect of bulk water on their function remains uncertain. Studies of the influences of osmotic stress on the GPCR archetype rhodopsin have given insights into the functional role of water in receptor activation. Experimental work has discovered that osmolytes shift the metarhodopsin equilibrium after photoactivation, either to the active or inactive conformations according to their molar mass. At least 80 water molecules are found to enter rhodopsin in the transition to the photoreceptor active state. We infer that this movement of water is both necessary and sufficient for receptor activation. If the water influx is prevented, e.g., by large polymer osmolytes or by dehydration, then the receptor functional transition is back shifted. These findings imply a new paradigm in which rhodopsin becomes solvent swollen in the activation mechanism. Water thus acts as an allosteric modulator of function for rhodopsin-like receptors in lipid membranes.
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Affiliation(s)
- Andrey V Struts
- Department of Chemistry and Biochemistry, University of Arizona, Tucson, AZ 85721, USA; Laboratory of Biomolecular NMR, St.-Petersburg State University, 199034 St.-Petersburg, Russia
| | - Alexander V Barmasov
- Department of Biophysics, St.-Petersburg State Pediatric Medical University, 194100 St.-Petersburg, Russia; Department of Physics, St.-Petersburg State University, 199034 St.-Petersburg, Russia
| | - Steven D E Fried
- Department of Chemistry, Stanford University, Stanford, CA 94305, USA
| | - Kushani S K Hewage
- Department of Chemistry and Biochemistry, University of Arizona, Tucson, AZ 85721, USA
| | | | - Michael F Brown
- Department of Chemistry and Biochemistry, University of Arizona, Tucson, AZ 85721, USA; Department of Physics, University of Arizona, Tucson, AZ 85721, USA.
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14
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Di Pino S, Donkor ED, Sánchez VM, Rodriguez A, Cassone G, Scherlis D, Hassanali A. ZundEig: The Structure of the Proton in Liquid Water from Unsupervised Learning. J Phys Chem B 2023; 127:9822-9832. [PMID: 37930954 DOI: 10.1021/acs.jpcb.3c06078] [Citation(s) in RCA: 0] [Impact Index Per Article: 0] [Reference Citation Analysis] [Abstract] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Indexed: 11/08/2023]
Abstract
The structure of the excess proton in liquid water has been the subject of lively debate on both experimental and theoretical fronts for the last century. Fluctuations of the proton are typically interpreted in terms of limiting states referred to as the Eigen and Zundel species. Here, we put these ideas under the microscope, taking advantage of recent advances in unsupervised learning that use local atomic descriptors to characterize environments of acidic water combined with advanced clustering techniques. Our agnostic approach leads to the observation of only one charged cluster and two neutral ones. We demonstrate that the charged cluster involving the excess proton is best seen as an ionic topological defect in water's hydrogen bond network, forming a single local minimum on the global free-energy landscape. This charged defect is a highly fluxional moiety, where the idealized Eigen and Zundel species are neither limiting configurations nor distinct thermodynamic states. Instead, the ionic defect enhances the presence of neutral water defects through strong interactions with the network. We dub the combination of the charged and neutral defect clusters as ZundEig, demonstrating that the fluctuations between these local environments provide a general framework for rationalizing more descriptive notions of the proton in the existing literature.
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Affiliation(s)
- Solana Di Pino
- Departamento de Química Inorgánica, Analítica y Química Física/INQUIMAE, Facultad de Ciencias Exactas y Naturales, Universidad de Buenos Aires, Ciudad Universitaria, C1428EHA Buenos Aires, Argentina
| | - Edward Danquah Donkor
- International Centre for Theoretical Physics, Strada Costiera 11, 34151 Trieste, Italy
- Scuola Internazionale Superiore di Studi Avanzati (SISSA), 34136 Trieste, Italy
| | - Veronica M Sánchez
- Departamento de Química Inorgánica, Analítica y Química Física/INQUIMAE, Facultad de Ciencias Exactas y Naturales, Universidad de Buenos Aires, Ciudad Universitaria, C1428EHA Buenos Aires, Argentina
| | - Alex Rodriguez
- International Centre for Theoretical Physics, Strada Costiera 11, 34151 Trieste, Italy
- Dipartimento di Matematica e Geoscienze, Universitá degli Studi di Trieste, via Alfonso Valerio 12/1, 34127 Trieste, Italy
| | - Giuseppe Cassone
- Institute for Chemical-Physical Processes, National Research Council (CNR-IPCF), Viale Stagno d'Alcontres 37, 98158 Messina, Italy
| | - Damian Scherlis
- Departamento de Química Inorgánica, Analítica y Química Física/INQUIMAE, Facultad de Ciencias Exactas y Naturales, Universidad de Buenos Aires, Ciudad Universitaria, C1428EHA Buenos Aires, Argentina
| | - Ali Hassanali
- International Centre for Theoretical Physics, Strada Costiera 11, 34151 Trieste, Italy
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15
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Murakami T, Matsumoto N, Fujihara T, Takayanagi T. Possible Roles of Transition Metal Cations in the Formation of Interstellar Benzene via Catalytic Acetylene Cyclotrimerization. Molecules 2023; 28:7454. [PMID: 37959873 PMCID: PMC10649463 DOI: 10.3390/molecules28217454] [Citation(s) in RCA: 0] [Impact Index Per Article: 0] [Reference Citation Analysis] [Abstract] [Key Words] [Grants] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Received: 10/12/2023] [Revised: 10/28/2023] [Accepted: 11/03/2023] [Indexed: 11/15/2023] Open
Abstract
Polycyclic aromatic hydrocarbons (PAHs) are ubiquitous interstellar molecules. However, the formation mechanisms of PAHs and even the simplest cyclic aromatic hydrocarbon, benzene, are not yet fully understood. Recently, we reported the statistical and dynamical properties in the reaction mechanism of Fe+-catalyzed acetylene cyclotrimerization, whereby three acetylene molecules are directly converted to benzene. In this study, we extended our previous work and explored the possible role of the complex of other 3d transition metal cations, TM+ (TM = Sc, Ti, Mn, Co, and Ni), as a catalyst in acetylene cyclotrimerization. Potential energy profiles for bare TM+-catalyst (TM = Sc and Ti), for TM+NC--catalyst (TM = Sc, Ti, Mn, Co, and Ni), and for TM+-(H2O)8-catalyst (TM = Sc and Ti) systems were obtained using quantum chemistry calculations, including the density functional theory levels. The calculation results show that the scandium and titanium cations act as efficient catalysts in acetylene cyclotrimerization and that reactants, which contain an isolated acetylene and (C2H2)2 bound to a bare (ligated) TM cation (TM = Sc and Ti), can be converted into a benzene-metal-cation product complex without an entrance barrier. We found that the number of electrons in the 3d orbitals of the transition metal cation significantly contributes to the catalytic efficiency in the acetylene cyclotrimerization process. On-the-fly Born-Oppenheimer molecular dynamics (BOMD) simulations of the Ti+-NC- and Ti+-(H2O)8 complexes were also performed to comprehensively understand the nuclear dynamics of the reactions. The computational results suggest that interstellar benzene can be produced via acetylene cyclotrimerization reactions catalyzed by transition metal cation complexes.
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Affiliation(s)
- Tatsuhiro Murakami
- Department of Chemistry, Saitama University, Shimo-Okubo 255, Sakura-ku, Saitama City 338-8570, Japan; (N.M.); (T.F.)
- Department of Materials & Life Sciences, Faculty of Science & Technology, Sophia University, 7-1 Kioicho, Chiyoda-ku, Tokyo 102-8554, Japan
| | - Naoki Matsumoto
- Department of Chemistry, Saitama University, Shimo-Okubo 255, Sakura-ku, Saitama City 338-8570, Japan; (N.M.); (T.F.)
| | - Takashi Fujihara
- Department of Chemistry, Saitama University, Shimo-Okubo 255, Sakura-ku, Saitama City 338-8570, Japan; (N.M.); (T.F.)
- Comprehensive Analysis Center for Science, Saitama University, Shimo-Okubo 255, Sakura-ku, Saitama City 338-8570, Japan
| | - Toshiyuki Takayanagi
- Department of Chemistry, Saitama University, Shimo-Okubo 255, Sakura-ku, Saitama City 338-8570, Japan; (N.M.); (T.F.)
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16
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Bhat B, Pahari S, Kwon JSI, Akbulut MES. Stimuli-responsive viscosity modifiers. Adv Colloid Interface Sci 2023; 321:103025. [PMID: 37871381 DOI: 10.1016/j.cis.2023.103025] [Citation(s) in RCA: 0] [Impact Index Per Article: 0] [Reference Citation Analysis] [Abstract] [Key Words] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Received: 04/18/2023] [Revised: 09/01/2023] [Accepted: 10/10/2023] [Indexed: 10/25/2023]
Abstract
Stimuli responsive viscosity modifiers entail an important class of materials which allow for smart material formation utilizing various stimuli for switching such as pH, temperature, light and salinity. They have seen applications in the biomedical space including tissue engineering and drug delivery, wherein stimuli responsive hydrogels and polymeric vessels have been extensively applied. Applications have also been seen in other domains like the energy sector and automobile industry, in technologies such as enhanced oil recovery. The chemistry and microstructural arrangements of the aqueous morphologies of dissolved materials are usually sensitive to the aforementioned stimuli which subsequently results in rheological sensitivity as well. Herein, we overview different structures capable of viscosity modification as well as go over the rheological theory associated with classical systems studied in literature. A detailed analysis allows us to explore correlations between commonly discussed models such as molecular packing parameter, tube reptation and stress relaxation with structural and rheological changes. We then present five primary mechanisms corresponding to stimuli responsive viscosity modification: (i) packing parameter modification via functional group conditioning and (ii) via dynamic bond formation, (iii) mesh formation by interlinking of network nodes, (iv) viscosity modification by chain conformation changes and (v) viscosity modification by particle jamming. We also overview several recent examples from literature that employ the concepts discussed to create novel classes of intriguing stimuli responsive structures and their corresponding rheological properties. Furthermore, we also explore systems that are responsive to multiple stimuli which can provide enhanced functionality and versatility by providing multi-level and precise actuation. Such systems have been used for programmed site-specific drug delivery.
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Affiliation(s)
- Bhargavi Bhat
- Artie McFerrin Department of Chemical Engineering, Texas A&M University, College Station, TX 77843, USA
| | - Silabrata Pahari
- Artie McFerrin Department of Chemical Engineering, Texas A&M University, College Station, TX 77843, USA
| | - Joseph Sang-Il Kwon
- Artie McFerrin Department of Chemical Engineering, Texas A&M University, College Station, TX 77843, USA; Texas A&M Energy Institute, College Station, TX 77843, USA
| | - Mustafa E S Akbulut
- Artie McFerrin Department of Chemical Engineering, Texas A&M University, College Station, TX 77843, USA; Department of Materials Science and Engineering, Texas A&M University, College Station, TX 77843, USA; Texas A&M Energy Institute, College Station, TX 77843, USA.
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17
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Mouhat F, Peria M, Morresi T, Vuilleumier R, Saitta AM, Casula M. Thermal dependence of the hydrated proton and optimal proton transfer in the protonated water hexamer. Nat Commun 2023; 14:6930. [PMID: 37903819 PMCID: PMC10616126 DOI: 10.1038/s41467-023-42366-4] [Citation(s) in RCA: 0] [Impact Index Per Article: 0] [Reference Citation Analysis] [Abstract] [Key Words] [Grants] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Received: 12/12/2022] [Accepted: 09/25/2023] [Indexed: 11/01/2023] Open
Abstract
Water is a key ingredient for life and plays a central role as solvent in many biochemical reactions. However, the intrinsically quantum nature of the hydrogen nucleus, revealing itself in a large variety of physical manifestations, including proton transfer, gives rise to unexpected phenomena whose description is still elusive. Here we study, by a combination of state-of-the-art quantum Monte Carlo methods and path-integral molecular dynamics, the structure and hydrogen-bond dynamics of the protonated water hexamer, the fundamental unit for the hydrated proton. We report a remarkably low thermal expansion of the hydrogen bond from zero temperature up to 300 K, owing to the presence of short-Zundel configurations, characterised by proton delocalisation and favoured by the synergy of nuclear quantum effects and thermal activation. The hydrogen bond strength progressively weakens above 300 K, when localised Eigen-like configurations become relevant. Our analysis, supported by the instanton statistics of shuttling protons, reveals that the near-room-temperature range from 250 K to 300 K is optimal for proton transfer in the protonated water hexamer.
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Affiliation(s)
- Félix Mouhat
- Saint Gobain Research Paris, 39, Quai Lucien Lefranc, 93300, Aubervilliers, France
| | - Matteo Peria
- IMPMC, Sorbonne Université, CNRS, MNHN, UMR 7590, 4 Place Jussieu, 75252, Paris, France
| | - Tommaso Morresi
- ECT*-Fondazione Bruno Kessler*, 286 Strada delle Tabarelle, 38123, Trento, Italy
| | - Rodolphe Vuilleumier
- PASTEUR, Département de Chimie, École normale supérieure, PSL Research University, Sorbonne Université, CNRS, 24 Rue Lhomond, 75005, Paris, France
| | - Antonino Marco Saitta
- IMPMC, Sorbonne Université, CNRS, MNHN, UMR 7590, 4 Place Jussieu, 75252, Paris, France
| | - Michele Casula
- IMPMC, Sorbonne Université, CNRS, MNHN, UMR 7590, 4 Place Jussieu, 75252, Paris, France.
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18
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Maurer M, Lazaridis T. Comparison of classical and ab initio simulations of hydronium and aqueous proton transfer. J Chem Phys 2023; 159:134506. [PMID: 37795787 DOI: 10.1063/5.0166596] [Citation(s) in RCA: 0] [Impact Index Per Article: 0] [Reference Citation Analysis] [Abstract] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Received: 07/06/2023] [Accepted: 09/25/2023] [Indexed: 10/06/2023] Open
Abstract
Proton transport in aqueous systems occurs by making and breaking covalent bonds, a process that classical force fields cannot reproduce. Various attempts have been made to remedy this deficiency, by valence bond theory or instantaneous proton transfers, but the ability of such methods to provide a realistic picture of this fundamental process has not been fully evaluated. Here we compare an ab initio molecular dynamics (AIMD) simulation of an excess proton in water to a simulation of a classical H3O+ in TIP3P water. The energy gap upon instantaneous proton transfer from H3O+ to an acceptor water molecule is much higher in the classical simulation than in the AIMD configurations evaluated with the same classical potential. The origins of this discrepancy are identified by comparing the solvent structures around the excess proton in the two systems. One major structural difference is in the tilt angle of the water molecules that accept an hydrogen bond from H3O+. The lack of lone pairs in TIP3P produces a tilt angle that is too large and generates an unfavorable geometry after instantaneous proton transfer. This problem can be alleviated by the use of TIP5P, which gives a tilt angle much closer to the AIMD result. Another important factor that raises the energy gap is the different optimal distance in water-water vs H3O+-water H-bonds. In AIMD the acceptor is gradually polarized and takes a hydronium-like configuration even before proton transfer actually happens. Ways to remedy some of these problems in classical simulations are discussed.
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Affiliation(s)
- Manuela Maurer
- Department of Chemistry, City College of New York/CUNY, 160 Convent Ave., New York, New York 10031, USA
| | - Themis Lazaridis
- Department of Chemistry, City College of New York/CUNY, 160 Convent Ave., New York, New York 10031, USA
- Graduate Programs in Chemistry, Biochemistry, and Physics, The Graduate Center, City University of New York, 365 Fifth Ave., New York, New York 10016, USA
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19
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Lei Y, Zhao W, Yin J, Ma Y, Zhao Z, Yin J, Khan Y, Hedhili MN, Chen L, Wang Q, Yuan Y, Zhang X, Bakr OM, Mohammed OF, Alshareef HN. Discovery of a three-proton insertion mechanism in α-molybdenum trioxide leading to enhanced charge storage capacity. Nat Commun 2023; 14:5490. [PMID: 37679354 PMCID: PMC10485074 DOI: 10.1038/s41467-023-41277-8] [Citation(s) in RCA: 1] [Impact Index Per Article: 1.0] [Reference Citation Analysis] [Abstract] [Key Words] [Grants] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Received: 12/14/2022] [Accepted: 08/29/2023] [Indexed: 09/09/2023] Open
Abstract
The α-molybdenum trioxide has attracted much attention for proton storage owing to its easily modified bilayer structure, fast proton insertion kinetics, and high theoretical specific capacity. However, the fundamental science of the proton insertion mechanism in α-molybdenum trioxide has not been fully understood. Herein, we uncover a three-proton intercalation mechanism in α-molybdenum trioxide using a specially designed phosphoric acid based liquid crystalline electrolyte. The semiconductor-to-metal transition behavior and the expansion of the lattice interlayers of α-molybdenum trioxide after trapping one mole of protons are verified experimentally and theoretically. Further investigation of the morphology of α-molybdenum trioxide indicates its fracture behavior upon the proton intercalation process, which creates diffusion channels for hydronium ions. Notably, the observation of an additional redox behavior at low potential endows α-molybdenum trioxide with an improved specific discharge capacity of 362 mAh g-1.
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Affiliation(s)
- Yongjiu Lei
- Physical Science and Engineering Division, King Abdullah University of Science and Technology (KAUST), Thuwal, 23955-6900, Kingdom of Saudi Arabia
| | - Wenli Zhao
- Physical Science and Engineering Division, King Abdullah University of Science and Technology (KAUST), Thuwal, 23955-6900, Kingdom of Saudi Arabia
| | - Jun Yin
- Physical Science and Engineering Division, King Abdullah University of Science and Technology (KAUST), Thuwal, 23955-6900, Kingdom of Saudi Arabia
- Department of Applied Physics, The Hong Kong Polytechnic University, Kowloon, 999077, Hong Kong, PR China
| | - Yinchang Ma
- Physical Science and Engineering Division, King Abdullah University of Science and Technology (KAUST), Thuwal, 23955-6900, Kingdom of Saudi Arabia
| | - Zhiming Zhao
- Physical Science and Engineering Division, King Abdullah University of Science and Technology (KAUST), Thuwal, 23955-6900, Kingdom of Saudi Arabia
| | - Jian Yin
- Physical Science and Engineering Division, King Abdullah University of Science and Technology (KAUST), Thuwal, 23955-6900, Kingdom of Saudi Arabia
| | - Yusuf Khan
- Physical Science and Engineering Division, King Abdullah University of Science and Technology (KAUST), Thuwal, 23955-6900, Kingdom of Saudi Arabia
| | - Mohamed Nejib Hedhili
- Core Labs, King Abdullah University of Science and Technology (KAUST), Thuwal, 23955-6900, Kingdom of Saudi Arabia
| | - Long Chen
- Core Labs, King Abdullah University of Science and Technology (KAUST), Thuwal, 23955-6900, Kingdom of Saudi Arabia
| | - Qingxiao Wang
- Core Labs, King Abdullah University of Science and Technology (KAUST), Thuwal, 23955-6900, Kingdom of Saudi Arabia
| | - Youyou Yuan
- Core Labs, King Abdullah University of Science and Technology (KAUST), Thuwal, 23955-6900, Kingdom of Saudi Arabia
| | - Xixiang Zhang
- Physical Science and Engineering Division, King Abdullah University of Science and Technology (KAUST), Thuwal, 23955-6900, Kingdom of Saudi Arabia
| | - Osman M Bakr
- Physical Science and Engineering Division, King Abdullah University of Science and Technology (KAUST), Thuwal, 23955-6900, Kingdom of Saudi Arabia
| | - Omar F Mohammed
- Advanced Membranes and Porous Materials Center, KAUST Catalysis Center, Physical Science and Engineering Division, King Abdullah University of Science and Technology, Thuwal, 23955-6900, Kingdom of Saudi Arabia
| | - Husam N Alshareef
- Physical Science and Engineering Division, King Abdullah University of Science and Technology (KAUST), Thuwal, 23955-6900, Kingdom of Saudi Arabia.
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20
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Wang L, Yan J, Hong Y, Yu Z, Chen J, Zheng J. Ultrahigh-rate and ultralong-life aqueous batteries enabled by special pair-dancing proton transfer. SCIENCE ADVANCES 2023; 9:eadf4589. [PMID: 37146149 PMCID: PMC10162668 DOI: 10.1126/sciadv.adf4589] [Citation(s) in RCA: 10] [Impact Index Per Article: 10.0] [Reference Citation Analysis] [Abstract] [Track Full Text] [Subscribe] [Scholar Register] [Indexed: 05/07/2023]
Abstract
The design of Faradaic battery electrodes with high rate capability and long cycle life comparable to those of supercapacitors is a grand challenge. Here, we bridge this performance gap by taking advantage of a unique ultrafast proton conduction mechanism in vanadium oxide electrode, developing an aqueous battery with untrahigh rate capability up to 1000 C (400 A g-1) and extremely long life of 0.2 million cycles. The mechanism is elucidated by comprehensive experimental and theoretical results. Instead of slow individual Zn2+ transfer or Grotthuss chain transfer of confined H+, the ultrafast kinetics and excellent cyclic stability are enabled by rapid 3D proton transfer in vanadium oxide via the special pair dance switching between Eigen and Zundel configurations with little constraint and low energy barriers. This work provides insight into developing high-power and long-life electrochemical energy storage devices with nonmetal ion transfer through special pair dance topochemistry dictated by hydrogen bond.
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Affiliation(s)
- Lulu Wang
- College of Chemistry and Molecular Engineering, Beijing National Laboratory for Molecular Sciences, Peking University, Beijing 100871, China
| | - Jie Yan
- College of Chemistry and Molecular Engineering, Beijing National Laboratory for Molecular Sciences, Peking University, Beijing 100871, China
| | - Yuexian Hong
- College of Chemistry and Molecular Engineering, Beijing National Laboratory for Molecular Sciences, Peking University, Beijing 100871, China
| | - Zhihao Yu
- College of Chemistry and Molecular Engineering, Beijing National Laboratory for Molecular Sciences, Peking University, Beijing 100871, China
| | - Jitao Chen
- College of Chemistry and Molecular Engineering, Beijing National Laboratory for Molecular Sciences, Peking University, Beijing 100871, China
| | - Junrong Zheng
- College of Chemistry and Molecular Engineering, Beijing National Laboratory for Molecular Sciences, Peking University, Beijing 100871, China
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21
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Li XY, Wang T, Cai YC, Meng ZD, Nan JW, Ye JY, Yi J, Zhan DP, Tian N, Zhou ZY, Sun SG. Mechanism of Cations Suppressing Proton Diffusion Kinetics for Electrocatalysis. Angew Chem Int Ed Engl 2023; 62:e202218669. [PMID: 36762956 DOI: 10.1002/anie.202218669] [Citation(s) in RCA: 19] [Impact Index Per Article: 19.0] [Reference Citation Analysis] [Abstract] [Key Words] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Received: 12/19/2022] [Revised: 02/07/2023] [Accepted: 02/10/2023] [Indexed: 02/11/2023]
Abstract
Proton transfer is crucial for electrocatalysis. Accumulating cations at electrochemical interfaces can alter the proton transfer rate and then tune electrocatalytic performance. However, the mechanism for regulating proton transfer remains ambiguous. Here, we quantify the cation effect on proton diffusion in solution by hydrogen evolution on microelectrodes, revealing the rate can be suppressed by more than 10 times. Different from the prevalent opinions that proton transport is slowed down by modified electric field, we found water structure imposes a more evident effect on kinetics. FTIR test and path integral molecular dynamics simulation indicate that proton prefers to wander within the hydration shell of cations rather than to hop rapidly along water wires. Low connectivity of water networks disrupted by cations corrupts the fast-moving path in bulk water. This study highlights the promising way for regulating proton kinetics via a modified water structure.
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Affiliation(s)
- Xiao-Yu Li
- State Key Laboratory of Physical Chemistry of Solid Surfaces, Tan Kah Kee Innovation Laboratory, Collaborative Innovation Center of Chemistry for Energy Materials, College of Chemistry and Chemical Engineering, Xiamen University, Xiamen, 361005, P. R. China
| | - Tao Wang
- State Key Laboratory of Physical Chemistry of Solid Surfaces, Tan Kah Kee Innovation Laboratory, Collaborative Innovation Center of Chemistry for Energy Materials, College of Chemistry and Chemical Engineering, Xiamen University, Xiamen, 361005, P. R. China
| | - Yu-Chen Cai
- State Key Laboratory of Physical Chemistry of Solid Surfaces, Tan Kah Kee Innovation Laboratory, Collaborative Innovation Center of Chemistry for Energy Materials, College of Chemistry and Chemical Engineering, Xiamen University, Xiamen, 361005, P. R. China
| | - Zhao-Dong Meng
- State Key Laboratory of Physical Chemistry of Solid Surfaces, Tan Kah Kee Innovation Laboratory, Collaborative Innovation Center of Chemistry for Energy Materials, College of Chemistry and Chemical Engineering, Xiamen University, Xiamen, 361005, P. R. China
| | - Jing-Wen Nan
- State Key Laboratory of Physical Chemistry of Solid Surfaces, Tan Kah Kee Innovation Laboratory, Collaborative Innovation Center of Chemistry for Energy Materials, College of Chemistry and Chemical Engineering, Xiamen University, Xiamen, 361005, P. R. China
| | - Jin-Yu Ye
- State Key Laboratory of Physical Chemistry of Solid Surfaces, Tan Kah Kee Innovation Laboratory, Collaborative Innovation Center of Chemistry for Energy Materials, College of Chemistry and Chemical Engineering, Xiamen University, Xiamen, 361005, P. R. China
| | - Jun Yi
- School of Electronic Science and Engineering, Xiamen University, Xiamen, 361005, P. R. China
| | - Dong-Ping Zhan
- State Key Laboratory of Physical Chemistry of Solid Surfaces, Tan Kah Kee Innovation Laboratory, Collaborative Innovation Center of Chemistry for Energy Materials, College of Chemistry and Chemical Engineering, Xiamen University, Xiamen, 361005, P. R. China
| | - Na Tian
- State Key Laboratory of Physical Chemistry of Solid Surfaces, Tan Kah Kee Innovation Laboratory, Collaborative Innovation Center of Chemistry for Energy Materials, College of Chemistry and Chemical Engineering, Xiamen University, Xiamen, 361005, P. R. China
| | - Zhi-You Zhou
- State Key Laboratory of Physical Chemistry of Solid Surfaces, Tan Kah Kee Innovation Laboratory, Collaborative Innovation Center of Chemistry for Energy Materials, College of Chemistry and Chemical Engineering, Xiamen University, Xiamen, 361005, P. R. China
| | - Shi-Gang Sun
- State Key Laboratory of Physical Chemistry of Solid Surfaces, Tan Kah Kee Innovation Laboratory, Collaborative Innovation Center of Chemistry for Energy Materials, College of Chemistry and Chemical Engineering, Xiamen University, Xiamen, 361005, P. R. China
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22
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Compton RG, Sokolov SV. Electrochemistry needs electrochemists: “goodbye to rotating discs”. J Solid State Electrochem 2023. [DOI: 10.1007/s10008-023-05443-8] [Citation(s) in RCA: 0] [Impact Index Per Article: 0] [Reference Citation Analysis] [Abstract] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Indexed: 03/28/2023]
Abstract
AbstractThe essential need for expert, fully trained electrochemists in the successful application of the subject is illustrated with several examples including the use of rotating electrodes and impedance spectroscopy where the use of the techniques in “black box” mode non-experts is likely to lead to disappointment or embarrassment.
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23
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Park NA, Glish GL, Dick JE. Investigating Electrosprayed Droplets Using Particle-into-Liquid Sampling for Nanoliter Electrochemical Reactions. JOURNAL OF THE AMERICAN SOCIETY FOR MASS SPECTROMETRY 2023; 34:320-327. [PMID: 36629397 DOI: 10.1021/jasms.2c00338] [Citation(s) in RCA: 2] [Impact Index Per Article: 2.0] [Reference Citation Analysis] [Abstract] [Track Full Text] [Subscribe] [Scholar Register] [Indexed: 06/17/2023]
Abstract
Electrospray ionization (ESI) is a powerful ionization technique that can generate charged solvent droplets and bare analyte ions from sample solutions. Despite seeing extensive use in mass spectrometry due in part to the low internal energy deposited into the ions formed during ionization, some unknowns persist regarding the exact dynamics of droplet breakup and molecule behavior during spray, and research is still underway regarding how various types of molecules acquire charge during the ESI process. Previously, the authors introduced a novel aerosol measurement technique, particle-into-liquid sampling for nanoliter electrochemical reactions (PILSNER). The current work introduces a new method utilizing PILSNER for the examination of the particles generated during ESI using simple analysis techniques with a commercially available potentiostat. This technique is applied in this work for the detection of charges on electrosprayed droplets, including the estimation of the number of charges on individual ESI droplets using a fluorescent proxy. This technique provides an additional tool for the exploration of the complex process of droplet generation and ion liberation during ESI.
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Affiliation(s)
- Nathaneal A Park
- Department of Chemistry, The University of North Carolina at Chapel Hill, Chapel Hill, North Carolina27599, United States
| | - Gary L Glish
- Department of Chemistry, The University of North Carolina at Chapel Hill, Chapel Hill, North Carolina27599, United States
| | - Jeffrey E Dick
- Department of Chemistry, The University of North Carolina at Chapel Hill, Chapel Hill, North Carolina27599, United States
- Lineberger Comprehensive Cancer Center, School of Medicine, The University of North Carolina at Chapel Hill, Chapel Hill, North Carolina27599, United States
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24
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Bandyopadhyay D, Bhanja K, Choudhury N. On the Propensity of Excess Hydroxide Ions at the Alcohol Monolayer-Water Interface. J Phys Chem B 2023; 127:783-793. [PMID: 36639623 DOI: 10.1021/acs.jpcb.2c05719] [Citation(s) in RCA: 0] [Impact Index Per Article: 0] [Reference Citation Analysis] [Abstract] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Indexed: 01/15/2023]
Abstract
Atomistic molecular dynamics simulations have been employed to study the self-ion (H+ and OH-) distribution at the interface between long-chain C16-OH alcohol (cetyl alcohol) monolayer and water. It is well known that the free air-water interface is acidic due to accumulation of the hydronium (H3O+) ions at the interface. In the present study, we have observed that contrary to the air-water interface, at the long-chain alcohol monolayer-water interface, it is the hydroxide (OH-) ion, not the hydronium ion (H3O+) that gets accumulated. By calculating the potential of mean forces, it is confirmed that there is extra stabilization for the OH- ions at the interface relative to the bulk, but no such stabilization is observed for the H3O+ ions. By analyzing the interaction of the self-ions with other constituents in the medium, it is clearly shown that the favorable interaction of the OH- ions with the alcoholic -OH groups stabilizes this ion at the interface. By calculating coordination numbers of the self-ions it is observed that around 50% water neighbors are substituted by alcoholic -OH in case of the hydroxide ion at the interface, whereas in the case of hydronium ions, only 15% water neighbors are substituted by the alcoholic -OH. The most interesting observation about the local structure and H-bonding pattern is that the hydroxide ion acts solely as the H-bond acceptor, but the hydronium ion acts only as the H-bond donor.
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Affiliation(s)
| | - Kalyan Bhanja
- Heavy Water Division, Bhabha Atomic Research Centre, Mumbai400 085, India
| | - Niharendu Choudhury
- Theoretical Chemistry Section, Chemistry Division, Bhabha Atomic Research Centre, Mumbai400 085, India.,Homi Bhabha National Institute, Anushaktinagar, Mumbai400 094, India
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25
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Hao H, Adams EM, Funke S, Schwaab G, Havenith M, Head-Gordon T. Highly Altered State of Proton Transport in Acid Pools in Charged Reverse Micelles. J Am Chem Soc 2023; 145:1826-1834. [PMID: 36633459 PMCID: PMC9881006 DOI: 10.1021/jacs.2c11331] [Citation(s) in RCA: 0] [Impact Index Per Article: 0] [Reference Citation Analysis] [Abstract] [Track Full Text] [Figures] [Journal Information] [Subscribe] [Scholar Register] [Indexed: 01/13/2023]
Abstract
Transport mechanisms of solvated protons of 1 M HCl acid pools, confined within reverse micelles (RMs) containing the negatively charged surfactant sodium bis(2-ethylhexyl) sulfosuccinate (NaAOT) or the positively charged cetyltrimethylammonium bromide (CTABr), are analyzed with reactive force field simulations to interpret dynamical signatures from TeraHertz absorption and dielectric relaxation spectroscopy. We find that the forward proton hopping events for NaAOT are further suppressed compared to a nonionic RM, while the Grotthuss mechanism ceases altogether for CTABr. We attribute the sluggish proton dynamics for both charged RMs as due to headgroup and counterion charges that expel hydronium and chloride ions from the interface and into the bulk interior, thereby increasing the pH of the acid pools relative to the nonionic RM. For charged NaAOT and CTABr RMs, the localization of hydronium near a counterion or conjugate base reduces the Eigen and Zundel configurations that enable forward hopping. Thus, localized oscillatory hopping dominates, an effect that is most extreme for CTABr in which the proton residence time increases dramatically such that even oscillatory hopping is slow.
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Affiliation(s)
- Hongxia Hao
- Kenneth
S. Pitzer Center for Theoretical Chemistry, Department of Chemistry, University of California, Berkeley, California94720, United States
| | - Ellen M. Adams
- Cluster
of Excellence Physics of Life, Technische
Universität Dresden, 01307Dresden, Germany,Helmholtz-Zentrum
Dresden-Rossendorf, Institute of Resource
Ecology, 01328Dresden, Germany
| | - Sarah Funke
- Lehrstuhl
für Physkalische Chemie II, Ruhr
Universität Bochum, 44801Bochum, Germany
| | - Gerhard Schwaab
- Lehrstuhl
für Physkalische Chemie II, Ruhr
Universität Bochum, 44801Bochum, Germany
| | - Martina Havenith
- Lehrstuhl
für Physkalische Chemie II, Ruhr
Universität Bochum, 44801Bochum, Germany
| | - Teresa Head-Gordon
- Kenneth
S. Pitzer Center for Theoretical Chemistry, Department of Chemistry, University of California, Berkeley, California94720, United States,Department
of Bioengineering, Department of Chemical and Biomolecular Engineering, University of California, Berkeley, California94720, United States,Chemical
Sciences Division, Lawrence Berkeley National
Laboratory, Berkeley, California94720, United States,
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26
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Yan S, Wang B, Lin H. Tracking the Delocalized Proton in Concerted Proton Transfer in Bulk Water. J Chem Theory Comput 2023; 19:448-459. [PMID: 36630655 DOI: 10.1021/acs.jctc.2c01097] [Citation(s) in RCA: 2] [Impact Index Per Article: 2.0] [Reference Citation Analysis] [Abstract] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Indexed: 01/13/2023]
Abstract
A solvated proton in water is often characterized as a charge or structural defect, and it is important to track its evolution on-the-fly in certain dynamics simulations. Previously, we introduced the proton indicator, a pseudo-atom, whose position approximates the location of the excess proton modeled as a structural defect. The proton indicator generally yields a smooth trajectory of a hydrated proton diffusing in aqueous solutions, including in the events of stepwise proton transfer via the Grotthuss mechanism; however, the proton indicator did not perform well in the events of concerted proton transfer, for which it occasionally yielded large position displacements between two successive time steps. To overcome this hurdle, we develop a new algorithm of a proton indicator with greatly enhanced performance for concerted proton transfer in bulk water. A protocol is proposed to exhaustively explore the hydrogen-bonding network of the water wires over which the excess proton is delocalized and to properly account for the contributions of the water molecules in this network as the geometry evolves. The new proton indicator (called Indicator 2.0) is assessed in dynamics simulations of an excess proton in bulk water and in specially constructed model systems of more complex architectures. The results demonstrate that the new indicator yields a smooth trajectory in both stepwise and concerted proton transfers.
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Affiliation(s)
- Shengheng Yan
- State Key Laboratory of Physical Chemistry of Solid Surfaces and Fujian Provincial Key Laboratory of Theoretical and Computational Chemistry, College of Chemistry and Chemical Engineering, Xiamen University, Xiamen360015P. R. China
| | - Binju Wang
- State Key Laboratory of Physical Chemistry of Solid Surfaces and Fujian Provincial Key Laboratory of Theoretical and Computational Chemistry, College of Chemistry and Chemical Engineering, Xiamen University, Xiamen360015P. R. China
| | - Hai Lin
- Department of Chemistry, CB 194, University of Colorado Denver, P.O. Box 173364, Denver, Colorado80217, United States
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27
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Liu Y, Li C, Voth GA. Generalized Transition State Theory Treatment of Water-Assisted Proton Transport Processes in Proteins. J Phys Chem B 2022; 126:10452-10459. [PMID: 36459423 PMCID: PMC9762399 DOI: 10.1021/acs.jpcb.2c06703] [Citation(s) in RCA: 0] [Impact Index Per Article: 0] [Reference Citation Analysis] [Abstract] [MESH Headings] [Grants] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Received: 09/20/2022] [Revised: 11/15/2022] [Indexed: 12/03/2022]
Abstract
Transition state theory (TST) is widely employed for estimating the transition rate of a reaction when combined with free energy sampling techniques. A derivation of the transition theory rate expression for a general n-dimensional case is presented in this work which specifically focuses on water-assisted proton transfer/transport reactions, especially for protein systems. Our work evaluates the TST prefactor calculated at the transition state dividing surface compared to one sampled, as an approximation, in the reactant state in four case studies of water-assisted proton transport inside membrane proteins and highlights the significant impact of the prefactor position dependence in proton transport processes.
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Affiliation(s)
- Yu Liu
- Department of Chemistry, Chicago Center
for Theoretical Chemistry, James Franck Institute, and Institute for
Biophysical Dynamics, The University of
Chicago, Chicago, Illinois60637, United States
| | - Chenghan Li
- Department of Chemistry, Chicago Center
for Theoretical Chemistry, James Franck Institute, and Institute for
Biophysical Dynamics, The University of
Chicago, Chicago, Illinois60637, United States
| | - Gregory A. Voth
- Department of Chemistry, Chicago Center
for Theoretical Chemistry, James Franck Institute, and Institute for
Biophysical Dynamics, The University of
Chicago, Chicago, Illinois60637, United States
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28
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Knorr J, Sülzner N, Geissler B, Spies C, Grandjean A, Kutta RJ, Jung G, Nuernberger P. Ultrafast transient absorption and solvation of a super-photoacid in acetoneous environments. PHOTOCHEMICAL & PHOTOBIOLOGICAL SCIENCES : OFFICIAL JOURNAL OF THE EUROPEAN PHOTOCHEMISTRY ASSOCIATION AND THE EUROPEAN SOCIETY FOR PHOTOBIOLOGY 2022; 21:2179-2192. [PMID: 36178669 DOI: 10.1007/s43630-022-00287-z] [Citation(s) in RCA: 1] [Impact Index Per Article: 0.5] [Reference Citation Analysis] [Abstract] [Track Full Text] [Subscribe] [Scholar Register] [Received: 05/11/2022] [Accepted: 08/08/2022] [Indexed: 12/13/2022]
Abstract
The phenomenon of photoacidity, i.e., an increase in acidity by several orders of magnitude upon electronic excitation, is frequently encountered in aromatic alcohols capable of transferring a proton to a suitable acceptor. A promising new class of neutral super-photoacids based on pyranine derivatives has been shown to exhibit pronounced solvatochromic effects. To disclose the underlying mechanisms contributing to excited-state proton transfer (ESPT) and the temporal characteristics of solvation and ESPT, we scrutinize the associated ultrafast dynamics of the strongest photoacid of this class, namely tris(1,1,1,3,3,3-hexafluoropropan-2-yl)8-hydroxypyrene-1,3,6-trisulfonate, in acetoneous environment, thereby finding experimental evidence for ESPT even under these adverse conditions for proton transfer. Juxtaposing results from time-correlated single-photon counting and femtosecond transient absorption measurements combined with a complete decomposition of all signal components, i.e., absorption of ground and excited states as well as stimulated emission, we disclose dynamics of solvation, rotational diffusion, and radiative relaxation processes in acetone and identify the relevant steps of ESPT along with the associated time scales.
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Affiliation(s)
- Johannes Knorr
- Physikalische Chemie II, Ruhr-Universität Bochum, 44780, Bochum, Germany.,Erlangen Graduate School in Advanced Optical Technologies (SAOT), Friedrich-Alexander-Universität Erlangen-Nürnberg (FAU), Paul-Gordan-Straße 6, 91052, Erlangen, Germany
| | - Niklas Sülzner
- Lehrstuhl für Theoretische Chemie, Ruhr-Universität Bochum, 44780, Bochum, Germany.,Physikalische Chemie II, Ruhr-Universität Bochum, 44780, Bochum, Germany
| | - Bastian Geissler
- Institut für Physikalische und Theoretische Chemie, Universität Regensburg, Universitätsstraße 31, 95053, Regensburg, Germany.,Physikalische Chemie II, Ruhr-Universität Bochum, 44780, Bochum, Germany
| | - Christian Spies
- Biophysikalische Chemie, Universität des Saarlandes, 66123, Saarbrücken, Germany.,Physikalische Chemie II, Ruhr-Universität Bochum, 44780, Bochum, Germany
| | - Alexander Grandjean
- Biophysikalische Chemie, Universität des Saarlandes, 66123, Saarbrücken, Germany
| | - Roger Jan Kutta
- Institut für Physikalische und Theoretische Chemie, Universität Regensburg, Universitätsstraße 31, 95053, Regensburg, Germany
| | - Gregor Jung
- Biophysikalische Chemie, Universität des Saarlandes, 66123, Saarbrücken, Germany
| | - Patrick Nuernberger
- Institut für Physikalische und Theoretische Chemie, Universität Regensburg, Universitätsstraße 31, 95053, Regensburg, Germany. .,Physikalische Chemie II, Ruhr-Universität Bochum, 44780, Bochum, Germany.
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29
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Sun W, Xu Z, Qiao C, Lv B, Gai L, Ji X, Jiang H, Liu L. Antifreezing Proton Zwitterionic Hydrogel Electrolyte via Ionic Hopping and Grotthuss Transport Mechanism toward Solid Supercapacitor Working at -50 °C. ADVANCED SCIENCE (WEINHEIM, BADEN-WURTTEMBERG, GERMANY) 2022; 9:e2201679. [PMID: 35882629 PMCID: PMC9507348 DOI: 10.1002/advs.202201679] [Citation(s) in RCA: 12] [Impact Index Per Article: 6.0] [Reference Citation Analysis] [Abstract] [Key Words] [Grants] [Track Full Text] [Figures] [Subscribe] [Scholar Register] [Received: 03/22/2022] [Revised: 05/09/2022] [Indexed: 06/15/2023]
Abstract
Hydrogel electrolyte is widely used in solid energy storage devices because of its high ionic conductivity, environmental friendliness, and non-leakage property. However, hydrogel electrolyte is not resistant to freezing. Here, a high proton conductive zwitterionic hydrogel electrolyte with super conductivity of 1.51 mS cm-1 at -50 °C is fabricated by random copolymerization of acrylamide and zwitterionic monomer in the presence of 1 m H2 SO4 and ethylene glycol (EG). The antifreezing performance and low temperature conductivity are ascribed to hydrogen bonds and ionic bonds between the components and water molecules in the system and can be tuned by changing the monomer ratio and EG contents. The proton hopping migration on the ionic group of the polymer chains and Grotthuss proton transport mechanism are responsible for the high proton conductivity while Grotthuss transport is dominated at the glassy state of the polymer chains. The electrolyte-assembled supercapacitor (SC) offers high specific capacitance of 93.5 F g-1 at 25 °C and 62.0 F g-1 at -50 °C with a capacitance retention of 91.1% and 81.5% after 10 000 cycles, respectively. The SC can even work at -70 °C. The electrolyte outperforms most reported antifreezing hydrogel electrolytes and has high potential in low-temperature devices.
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Affiliation(s)
- Weigang Sun
- School of Chemistry and Chemical EngineeringState Key Laboratory of Biobased Material and Green PapermakingQilu University of Technology (Shandong Academy of Sciences)Jinan250353China
| | - Zhen Xu
- School of Chemistry and Chemical EngineeringState Key Laboratory of Biobased Material and Green PapermakingQilu University of Technology (Shandong Academy of Sciences)Jinan250353China
| | - Congde Qiao
- School of Chemistry and Chemical EngineeringState Key Laboratory of Biobased Material and Green PapermakingQilu University of Technology (Shandong Academy of Sciences)Jinan250353China
| | - Bingxi Lv
- School of Chemistry and Chemical EngineeringState Key Laboratory of Biobased Material and Green PapermakingQilu University of Technology (Shandong Academy of Sciences)Jinan250353China
| | - Ligang Gai
- School of Chemistry and Chemical EngineeringState Key Laboratory of Biobased Material and Green PapermakingQilu University of Technology (Shandong Academy of Sciences)Jinan250353China
| | - Xingxiang Ji
- School of Chemistry and Chemical EngineeringState Key Laboratory of Biobased Material and Green PapermakingQilu University of Technology (Shandong Academy of Sciences)Jinan250353China
| | - Haihui Jiang
- School of Chemistry and Chemical EngineeringState Key Laboratory of Biobased Material and Green PapermakingQilu University of Technology (Shandong Academy of Sciences)Jinan250353China
| | - Libin Liu
- School of Chemistry and Chemical EngineeringState Key Laboratory of Biobased Material and Green PapermakingQilu University of Technology (Shandong Academy of Sciences)Jinan250353China
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30
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Shen J, Ye R, Liu Z, Zeng H. Hybrid Pyridine–Pyridone Foldamer Channels as M2‐Like Artificial Proton Channels. Angew Chem Int Ed Engl 2022; 61:e202200259. [DOI: 10.1002/anie.202200259] [Citation(s) in RCA: 0] [Impact Index Per Article: 0] [Reference Citation Analysis] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Received: 01/07/2022] [Indexed: 11/05/2022]
Affiliation(s)
- Jie Shen
- College of Chemistry Fuzhou University Fuzhou Fujian 350116 China
| | - Ruijuan Ye
- College of Chemistry Fuzhou University Fuzhou Fujian 350116 China
| | - Zhiwei Liu
- Department of Chemistry & Biochemistry Rowan University 201 Mullica Hill Road Glassboro NJ 08028 USA
| | - Huaqiang Zeng
- College of Chemistry Fuzhou University Fuzhou Fujian 350116 China
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31
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Xu T, Wang D, Li Z, Chen Z, Zhang J, Hu T, Zhang X, Shen L. Electrochemical Proton Storage: From Fundamental Understanding to Materials to Devices. NANO-MICRO LETTERS 2022; 14:126. [PMID: 35699769 PMCID: PMC9198198 DOI: 10.1007/s40820-022-00864-y] [Citation(s) in RCA: 13] [Impact Index Per Article: 6.5] [Reference Citation Analysis] [Abstract] [Key Words] [Grants] [Track Full Text] [Subscribe] [Scholar Register] [Received: 02/14/2022] [Accepted: 04/12/2022] [Indexed: 05/14/2023]
Abstract
Simultaneously improving the energy density and power density of electrochemical energy storage systems is the ultimate goal of electrochemical energy storage technology. An effective strategy to achieve this goal is to take advantage of the high capacity and rapid kinetics of electrochemical proton storage to break through the power limit of batteries and the energy limit of capacitors. This article aims to review the research progress on the physicochemical properties, electrochemical performance, and reaction mechanisms of electrode materials for electrochemical proton storage. According to the different charge storage mechanisms, the surface redox, intercalation, and conversion materials are classified and introduced in detail, where the influence of crystal water and other nanostructures on the migration kinetics of protons is clarified. Several reported advanced full cell devices are summarized to promote the commercialization of electrochemical proton storage. Finally, this review provides a framework for research directions of charge storage mechanism, basic principles of material structure design, construction strategies of full cell device, and goals of practical application for electrochemical proton storage.
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Affiliation(s)
- Tiezhu Xu
- Jiangsu Key Laboratory of Electrochemical Energy Storage Technologies, College of Material Science and Technology, Nanjing University of Aeronautics and Astronautics, Nanjing, 211106, People's Republic of China
| | - Di Wang
- Jiangsu Key Laboratory of Electrochemical Energy Storage Technologies, College of Material Science and Technology, Nanjing University of Aeronautics and Astronautics, Nanjing, 211106, People's Republic of China
| | - Zhiwei Li
- Jiangsu Key Laboratory of Electrochemical Energy Storage Technologies, College of Material Science and Technology, Nanjing University of Aeronautics and Astronautics, Nanjing, 211106, People's Republic of China
| | - Ziyang Chen
- Jiangsu Key Laboratory of Electrochemical Energy Storage Technologies, College of Material Science and Technology, Nanjing University of Aeronautics and Astronautics, Nanjing, 211106, People's Republic of China
| | - Jinhui Zhang
- Jiangsu Key Laboratory of Electrochemical Energy Storage Technologies, College of Material Science and Technology, Nanjing University of Aeronautics and Astronautics, Nanjing, 211106, People's Republic of China
| | - Tingsong Hu
- Jiangsu Key Laboratory of Electrochemical Energy Storage Technologies, College of Material Science and Technology, Nanjing University of Aeronautics and Astronautics, Nanjing, 211106, People's Republic of China
| | - Xiaogang Zhang
- Jiangsu Key Laboratory of Electrochemical Energy Storage Technologies, College of Material Science and Technology, Nanjing University of Aeronautics and Astronautics, Nanjing, 211106, People's Republic of China.
| | - Laifa Shen
- Jiangsu Key Laboratory of Electrochemical Energy Storage Technologies, College of Material Science and Technology, Nanjing University of Aeronautics and Astronautics, Nanjing, 211106, People's Republic of China.
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32
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Zuo Y, Liu P, Ling L, Tian M, Wang Z, Tian H, Meng T, Sun X, Cai S. Boosted H + Intercalation Enables Ultrahigh Rate Performance of the δ-MnO 2 Cathode for Aqueous Zinc Batteries. ACS APPLIED MATERIALS & INTERFACES 2022; 14:26653-26661. [PMID: 35613712 DOI: 10.1021/acsami.2c02960] [Citation(s) in RCA: 7] [Impact Index Per Article: 3.5] [Reference Citation Analysis] [Abstract] [Key Words] [Track Full Text] [Subscribe] [Scholar Register] [Indexed: 06/15/2023]
Abstract
H+ intercalation, as a critical battery chemistry, enables electrodes' high rate performance due to the fast diffusion kinetics of H+. In this work, more water molecules are introduced into δ-MnO2 by the protonation of δ-MnO2 with abundant oxygen vacancies. Benefiting from the structure with a close arrangement of water molecules in interlayers, the Grotthuss transport of proton is achieved in the energy storage of the δ-MnO2 cathode. As a result, the δ-MnO2 cathode exhibits an ultrahigh rate performance with a capacity of 368.1 mAh g-1 at 0.5 A g-1 and 83.4 mAh g-1 at 50 A g-1, which has a capacity retention of 73% after 1100 cycles at 10 A g-1. The study of the storage mechanism reveals that the Grotthuss intercalation of proton predominates the storage process, which empowers the cathode with high rate performance.
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Affiliation(s)
- You Zuo
- Key Laboratory of Advanced Ceramics and Machining Technology of Ministry of Education, School of Materials Science and Engineering, Tianjin University, Tianjin 300072, China
| | - Pengbo Liu
- Key Laboratory of Advanced Ceramics and Machining Technology of Ministry of Education, School of Materials Science and Engineering, Tianjin University, Tianjin 300072, China
| | - Lei Ling
- Key Laboratory of Advanced Ceramics and Machining Technology of Ministry of Education, School of Materials Science and Engineering, Tianjin University, Tianjin 300072, China
| | - Meng Tian
- Key Laboratory of Advanced Ceramics and Machining Technology of Ministry of Education, School of Materials Science and Engineering, Tianjin University, Tianjin 300072, China
| | - Zhongyan Wang
- Key Laboratory of Advanced Ceramics and Machining Technology of Ministry of Education, School of Materials Science and Engineering, Tianjin University, Tianjin 300072, China
| | - Hao Tian
- Key Laboratory of Advanced Ceramics and Machining Technology of Ministry of Education, School of Materials Science and Engineering, Tianjin University, Tianjin 300072, China
| | - Tengfei Meng
- Key Laboratory of Advanced Ceramics and Machining Technology of Ministry of Education, School of Materials Science and Engineering, Tianjin University, Tianjin 300072, China
| | - Xiaohong Sun
- Key Laboratory of Advanced Ceramics and Machining Technology of Ministry of Education, School of Materials Science and Engineering, Tianjin University, Tianjin 300072, China
| | - Shu Cai
- Key Laboratory of Advanced Ceramics and Machining Technology of Ministry of Education, School of Materials Science and Engineering, Tianjin University, Tianjin 300072, China
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33
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Abstract
Although G-protein–coupled receptors (GPCRs) control vast physiological pathways, their activation remains chemically and physically enigmatic. Our osmotic stress studies of the visual receptor rhodopsin have redefined the standard model of GPCR signaling by revealing the essential role of bulk water. We show results consistent with a large number of water molecules flooding the rhodopsin interior during activation to stabilize the effector binding conformation. These results suggest a model of GPCR activation in which the receptor becomes solvent-swollen upon formation of the active state. We thus demonstrate the mechanism whereby water acts as a powerful allosteric modulator of a pharmacologically important membrane protein family. The Rhodopsin family of G-protein–coupled receptors (GPCRs) comprises the targets of nearly a third of all pharmaceuticals. Despite structural water present in GPCR X-ray structures, the physiological relevance of these solvent molecules to rhodopsin signaling remains unknown. Here, we show experimental results consistent with the idea that rhodopsin activation in lipid membranes is coupled to bulk water movements into the protein. To quantify hydration changes, we measured reversible shifting of the metarhodopsin equilibrium due to osmotic stress using an extensive series of polyethylene glycol (PEG) osmolytes. We discovered clear evidence that light activation entails a large influx of bulk water (∼80–100 molecules) into the protein, giving insight into GPCR activation mechanisms. Various size polymer osmolytes directly control rhodopsin activation, in which large solutes are excluded from rhodopsin and dehydrate the protein, favoring the inactive state. In contrast, small osmolytes initially forward shift the activation equilibrium until a quantifiable saturation point is reached, similar to gain-of-function protein mutations. For the limit of increasing osmolyte size, a universal response of rhodopsin to osmotic stress is observed, suggesting it adopts a dynamic, hydrated sponge-like state upon photoactivation. Our results demand a rethinking of the role of water dynamics in modulating various intermediates in the GPCR energy landscape. We propose that besides bound water, an influx of bulk water plays a necessary role in establishing the active GPCR conformation that mediates signaling.
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34
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Proton Coupling and the Multiscale Kinetic Mechanism of a Peptide Transporter. Biophys J 2022; 121:2266-2278. [PMID: 35614850 DOI: 10.1016/j.bpj.2022.05.029] [Citation(s) in RCA: 0] [Impact Index Per Article: 0] [Reference Citation Analysis] [Abstract] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Received: 02/24/2022] [Revised: 05/13/2022] [Accepted: 05/19/2022] [Indexed: 11/02/2022] Open
Abstract
Proton coupled peptide transporters (POTs) are crucial for the uptake of di- and tri-peptides as well as drug and pro-drug molecules in prokaryotes and eukaryotic cells. We illustrate from multiscale modeling how transmembrane proton flux couples within a POT protein to drive essential steps of the full functional cycle: 1) protonation of a glutamate on transmembrane helix (TM) 7 opens the extracellular gate, allowing ligand entry; 2) inward proton flow induces the cytosolic release of ligand by varying the protonation state of a second conserved glutamate on TM10; 3) proton movement between TM7 and TM10 is thermodynamically driven and kinetically permissible via water proton shuttling without the participation of ligand. Our results, for the first time, give direct computational confirmation for the alternating access model of POTs, and point to a quantitative multiscale kinetic picture of the functioning protein mechanism.
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35
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Shen J, Ye R, Liu Z, Zeng H. Hybrid Pyridine–Pyridone Foldamer Channels as M2‐Like Artificial Proton Channels. Angew Chem Int Ed Engl 2022. [DOI: 10.1002/ange.202200259] [Citation(s) in RCA: 0] [Impact Index Per Article: 0] [Reference Citation Analysis] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Indexed: 11/06/2022]
Affiliation(s)
- Jie Shen
- College of Chemistry Fuzhou University Fuzhou Fujian 350116 China
| | - Ruijuan Ye
- College of Chemistry Fuzhou University Fuzhou Fujian 350116 China
| | - Zhiwei Liu
- Department of Chemistry & Biochemistry Rowan University 201 Mullica Hill Road Glassboro NJ 08028 USA
| | - Huaqiang Zeng
- College of Chemistry Fuzhou University Fuzhou Fujian 350116 China
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36
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Konermann L, Kim S. Grotthuss Molecular Dynamics Simulations for Modeling Proton Hopping in Electrosprayed Water Droplets. J Chem Theory Comput 2022; 18:3781-3794. [PMID: 35544700 DOI: 10.1021/acs.jctc.2c00001] [Citation(s) in RCA: 2] [Impact Index Per Article: 1.0] [Reference Citation Analysis] [Abstract] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Indexed: 12/23/2022]
Abstract
Excess protons in water exhibit unique transport properties because they can rapidly hop along H-bonded water wires. Considerable progress has been made in unraveling this Grotthuss diffusion mechanism using quantum mechanical-based computational techniques. Unfortunately, high computational cost tends to restrict those techniques to small systems and short times. Molecular dynamics (MD) simulations can be applied to much larger systems and longer time windows. However, standard MD methods do not permit the dissociation/formation of covalent bonds, such that Grotthuss diffusion cannot be captured. Here, we bridge this gap by combining atomistic MD simulations (using Gromacs and TIP4P/2005 water) with proton hopping. Excess protons are modeled as hydronium ions that undergo H3O+ + H2O → H2O + H3O+ transitions. In accordance with ab initio MD data, these Grotthuss hopping events are executed in "bursts" with quasi-instantaneous hopping across one or more waters. The bursts are separated by regular MD periods during which H3O+ ions undergo Brownian diffusion. The resulting proton diffusion coefficient agrees with the literature value. We apply this Grotthuss MD technique to highly charged water droplets that are in a size regime encountered during electrospray ionization (5 nm radius, ∼17,000 H2O). The droplets undergo rapid solvent evaporation and occasional H3O+ ejection, keeping them at ca. 81% of the Rayleigh limit. The simulated behavior is consistent with phase Doppler anemometry data. The Grotthuss MD technique developed here should be useful for modeling the behavior of various proton-containing systems that are too large for high-level computational approaches. In particular, we envision future applications related to electrospray processes, where earlier simulations used metal cations while in reality excess protons dominate.
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Affiliation(s)
- Lars Konermann
- Department of Chemistry, The University of Western Ontario, London, Ontario N6A 5B7, Canada
| | - Scott Kim
- Department of Chemistry, The University of Western Ontario, London, Ontario N6A 5B7, Canada
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37
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Zhou Y, Zhang J, Cheng Y, Zhang X, Wu J, Zhang J. Click Modification for Polysaccharides via Novel Tunnel Transmission Phenomenon in Ionic Liquids. RESEARCH (WASHINGTON, D.C.) 2022; 2022:9853529. [PMID: 35252875 PMCID: PMC8857704 DOI: 10.34133/2022/9853529] [Citation(s) in RCA: 1] [Impact Index Per Article: 0.5] [Reference Citation Analysis] [Abstract] [Track Full Text] [Download PDF] [Figures] [Subscribe] [Scholar Register] [Received: 11/11/2021] [Accepted: 01/11/2022] [Indexed: 11/20/2022]
Abstract
It is extremely difficult to achieve a rapid and efficient modification of natural polysaccharides, due to the intrinsic strong hydrogen bonding networks and the slow mass transfer process during the reaction process. Herein, we found a fascinating anion-tunnel transmission phenomenon in the imidazolium-based ionic liquids with carboxylate anions. A novel click esterification of natural polysaccharides thus was demonstrated under a catalyst-free condition within a very short reaction time of 15 min at 0-80°C. Such a super-rapid and highly efficient modification strategy is available for various polysaccharides (cellulose, starch, inulin, pullulan, dextran, and xylan), different esterification reactions (acetification, propionation, benzoylation, and cyclohexyl formylation), and high concentrations, claiming a revolutionary potential in polysaccharide chemistry industries.
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Affiliation(s)
- Yan Zhou
- CAS Key Laboratory of Engineering Plastics, CAS Research/Education Center for Excellence in Molecular Sciences, Institute of Chemistry, Chinese Academy of Sciences (CAS), Beijing 100190, China.,University of Chinese Academy of Sciences, Beijing 100049, China
| | - Jinming Zhang
- CAS Key Laboratory of Engineering Plastics, CAS Research/Education Center for Excellence in Molecular Sciences, Institute of Chemistry, Chinese Academy of Sciences (CAS), Beijing 100190, China
| | - Yaohui Cheng
- CAS Key Laboratory of Engineering Plastics, CAS Research/Education Center for Excellence in Molecular Sciences, Institute of Chemistry, Chinese Academy of Sciences (CAS), Beijing 100190, China
| | - Xin Zhang
- CAS Key Laboratory of Engineering Plastics, CAS Research/Education Center for Excellence in Molecular Sciences, Institute of Chemistry, Chinese Academy of Sciences (CAS), Beijing 100190, China.,University of Chinese Academy of Sciences, Beijing 100049, China
| | - Jin Wu
- CAS Key Laboratory of Engineering Plastics, CAS Research/Education Center for Excellence in Molecular Sciences, Institute of Chemistry, Chinese Academy of Sciences (CAS), Beijing 100190, China
| | - Jun Zhang
- CAS Key Laboratory of Engineering Plastics, CAS Research/Education Center for Excellence in Molecular Sciences, Institute of Chemistry, Chinese Academy of Sciences (CAS), Beijing 100190, China.,University of Chinese Academy of Sciences, Beijing 100049, China
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38
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Watkins LC, DeGrado WF, Voth GA. Multiscale Simulation of an Influenza A M2 Channel Mutant Reveals Key Features of Its Markedly Different Proton Transport Behavior. J Am Chem Soc 2022; 144:769-776. [PMID: 34985907 PMCID: PMC8834648 DOI: 10.1021/jacs.1c09281] [Citation(s) in RCA: 3] [Impact Index Per Article: 1.5] [Reference Citation Analysis] [Abstract] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Indexed: 01/21/2023]
Abstract
The influenza A M2 channel, a prototype for viroporins, is an acid-activated viroporin that conducts protons across the viral membrane, a critical step in the viral life cycle. Four central His37 residues control channel activation by binding subsequent protons from the viral exterior, which opens the Trp41 gate and allows proton flux to the interior. Asp44 is essential for maintaining the Trp41 gate in a closed state at high pH, resulting in asymmetric conduction. The prevalent D44N mutant disrupts this gate and opens the C-terminal end of the channel, resulting in increased conduction and a loss of this asymmetric conduction. Here, we use extensive Multiscale Reactive Molecular Dynamics (MS-RMD) and quantum mechanics/molecular mechanics (QM/MM) molecular dynamics simulations with an explicit, reactive excess proton to calculate the free energy of proton transport in this M2 mutant and to study the dynamic molecular-level behavior of D44N M2. We find that this mutation significantly lowers the barrier of His37 deprotonation in the activated state and shifts the barrier for entry to the Val27 tetrad. These free energy changes are reflected in structural shifts. Additionally, we show that the increased hydration around the His37 tetrad diminishes the effect of the His37 charge on the channel's water structure, facilitating proton transport and enabling activation from the viral interior. Altogether, this work provides key insight into the fundamental characteristics of PT in WT M2 and how the D44N mutation alters this PT mechanism, and it expands understanding of the role of emergent mutations in viroporins.
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Affiliation(s)
- Laura C. Watkins
- Department of Chemistry, Chicago Center for Theoretical Chemistry, Institute for Biophysical Dynamics and James Franck Institute, The University of Chicago, Chicago, Illinois 60637, United States
| | - William F. DeGrado
- Department of Pharmaceutical Chemistry, University of California, San Francisco, San Francisco, California, 94158, United States
| | - Gregory A. Voth
- Department of Chemistry, Chicago Center for Theoretical Chemistry, Institute for Biophysical Dynamics and James Franck Institute, The University of Chicago, Chicago, Illinois 60637, United States,Corresponding Author
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39
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Hu Y, Wang S, He Y, An L. Evaluation of proton transport and solvation effect in hydrated Nafion membrane with degradation. Phys Chem Chem Phys 2022; 24:29024-29033. [DOI: 10.1039/d2cp02817d] [Citation(s) in RCA: 0] [Impact Index Per Article: 0] [Reference Citation Analysis] [Abstract] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Indexed: 11/26/2022]
Abstract
In proton exchange membrane fuel cells (PEMFCs), free radicals easily attack ionomers, resulting in membrane degradation.
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Affiliation(s)
- Yu Hu
- School of Energy Science and Engineering, Harbin Institute of Technology, Harbin, 150001, China
| | - Shuai Wang
- School of Energy Science and Engineering, Harbin Institute of Technology, Harbin, 150001, China
| | - Yurong He
- School of Energy Science and Engineering, Harbin Institute of Technology, Harbin, 150001, China
| | - Liang An
- Department of Mechanical Engineering, The Hong Kong Polytechnic University, Hung Hom, Kowloon, Hong Kong SAR, China
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40
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Rajasekaran M, Ayappa G. Influence of the extent of hydrophobicity on water organization and dynamics on 2D graphene oxide surfaces. Phys Chem Chem Phys 2022; 24:14909-14923. [DOI: 10.1039/d1cp03962h] [Citation(s) in RCA: 1] [Impact Index Per Article: 0.5] [Reference Citation Analysis] [Abstract] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Indexed: 11/21/2022]
Abstract
Graphene oxide (GO) nanomaterials are being extensively explored for a wide spectrum of applications, ranging from water desalination to fuel cell applications due to their tunable mechanical, thermal, and electrical...
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41
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Zhang X, Lefebvre PL, Harvey JN. Effect of solvent motions on the dynamics of the Diels-Alder reaction. Phys Chem Chem Phys 2021; 24:1120-1130. [PMID: 34928279 DOI: 10.1039/d1cp05272a] [Citation(s) in RCA: 2] [Impact Index Per Article: 0.7] [Reference Citation Analysis] [Abstract] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Indexed: 01/05/2023]
Abstract
How solvent motions affect the dynamics of chemical reactions in which the solute undergoes a substantial shape change is a fundamental but elusive issue. This work utilizes reactive simulation and Grote-Hynes theory to explore the effect of solvent motions on the dynamics of the Diels-Alder reaction (in the reverse direction, this reaction involves very substantial solute expansion) in aprotic solvents. The results reveal that the solvent environment is not sufficiently constraining to influence transition state passage dynamics, with the calculated transmission coefficients being close to unity. Even when solvent motions are suppressed or artificially slowed down, the solvent only affects the reaction dynamics in the transition state region to a very small extent. The only notable effect of solvent occurs far from the transition state region and corresponds to caging of the reactants within the reactant well.
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Affiliation(s)
- Xiaoyong Zhang
- Theoretical and Computational Chemistry, Department of Chemistry, KU Leuven Celestijnenlaan 200F, 3001, Leuven, Belgium.
| | - Pierre-Louis Lefebvre
- Theoretical and Computational Chemistry, Department of Chemistry, KU Leuven Celestijnenlaan 200F, 3001, Leuven, Belgium. .,Quantum Theory Project, Departments of Chemistry and Physics, University of Florida, Gainesville, Florida 32611, USA
| | - Jeremy N Harvey
- Theoretical and Computational Chemistry, Department of Chemistry, KU Leuven Celestijnenlaan 200F, 3001, Leuven, Belgium.
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42
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Silverstein TP. The Proton in Biochemistry: Impacts on Bioenergetics, Biophysical Chemistry, and Bioorganic Chemistry. Front Mol Biosci 2021; 8:764099. [PMID: 34901158 PMCID: PMC8661011 DOI: 10.3389/fmolb.2021.764099] [Citation(s) in RCA: 5] [Impact Index Per Article: 1.7] [Reference Citation Analysis] [Abstract] [Key Words] [Track Full Text] [Download PDF] [Figures] [Journal Information] [Subscribe] [Scholar Register] [Received: 08/25/2021] [Accepted: 10/11/2021] [Indexed: 11/13/2022] Open
Abstract
The proton is the smallest atomic particle, and in aqueous solution it is the smallest hydrated ion, having only two waters in its first hydration shell. In this article we survey key aspects of the proton in chemistry and biochemistry, starting with the definitions of pH and pK a and their application inside biological cells. This includes an exploration of pH in nanoscale spaces, distinguishing between bulk and interfacial phases. We survey the Eigen and Zundel models of the structure of the hydrated proton, and how these can be used to explain: a) the behavior of protons at the water-hydrophobic interface, and b) the extraordinarily high mobility of protons in bulk water via Grotthuss hopping, and inside proteins via proton wires. Lastly, we survey key aspects of the effect of proton concentration and proton transfer on biochemical reactions including ligand binding and enzyme catalysis, as well as pH effects on biochemical thermodynamics, including the Chemiosmotic Theory. We find, for example, that the spontaneity of ATP hydrolysis at pH ≥ 7 is not due to any inherent property of ATP (or ADP or phosphate), but rather to the low concentration of H+. Additionally, we show that acidification due to fermentation does not derive from the organic acid waste products, but rather from the proton produced by ATP hydrolysis.
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Affiliation(s)
- Todd P Silverstein
- Chemistry Department (emeritus), Willamette University, Salem, OR, United States
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43
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Adams EM, Hao H, Leven I, Rüttermann M, Wirtz H, Havenith M, Head‐Gordon T. Proton Traffic Jam: Effect of Nanoconfinement and Acid Concentration on Proton Hopping Mechanism. Angew Chem Int Ed Engl 2021. [DOI: 10.1002/ange.202108766] [Citation(s) in RCA: 1] [Impact Index Per Article: 0.3] [Reference Citation Analysis] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Indexed: 11/10/2022]
Affiliation(s)
- Ellen M. Adams
- Lehrstuhl für Physkalische Chemie II Ruhr Universität Bochum 44801 Bochum Germany
| | - Hongxia Hao
- Chemical Sciences Division Lawrence Berkeley National Laboratory Berkeley California 94720 USA
- Kenneth S. Pitzer Center for Theoretical Chemistry University of California Berkeley California 94720 USA
- Department of Chemistry University of California Berkeley California 94720 USA
| | - Itai Leven
- Chemical Sciences Division Lawrence Berkeley National Laboratory Berkeley California 94720 USA
- Kenneth S. Pitzer Center for Theoretical Chemistry University of California Berkeley California 94720 USA
- Department of Chemistry University of California Berkeley California 94720 USA
| | | | - Hanna Wirtz
- Lehrstuhl für Physkalische Chemie II Ruhr Universität Bochum 44801 Bochum Germany
| | - Martina Havenith
- Lehrstuhl für Physkalische Chemie II Ruhr Universität Bochum 44801 Bochum Germany
| | - Teresa Head‐Gordon
- Chemical Sciences Division Lawrence Berkeley National Laboratory Berkeley California 94720 USA
- Kenneth S. Pitzer Center for Theoretical Chemistry University of California Berkeley California 94720 USA
- Department of Chemistry University of California Berkeley California 94720 USA
- Department of Chemical and Biomolecular Engineering University of California Berkeley California 94720 USA
- Department of Bioengineering University of California Berkeley California 94720 USA
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44
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Butts CT, Martin RW. Bayesian estimation of the hydroxyl radical diffusion coefficient at low temperature and high pressure from atomistic molecular dynamics. J Chem Phys 2021; 155:194504. [PMID: 34800943 DOI: 10.1063/5.0064995] [Citation(s) in RCA: 0] [Impact Index Per Article: 0] [Reference Citation Analysis] [Abstract] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Indexed: 11/14/2022] Open
Abstract
The hydroxyl radical is the primary reactive oxygen species produced by the radiolysis of water and is a significant source of radiation damage to living organisms. Mobility of the hydroxyl radical at low temperatures and/or high pressures is hence a potentially important factor in determining the challenges facing psychrophilic and/or barophilic organisms in high-radiation environments (e.g., ice-interface or undersea environments in which radiative heating is a potential heat and energy source). Here, we estimate the diffusion coefficient for the hydroxyl radical in aqueous solution using a hierarchical Bayesian model based on atomistic molecular dynamics trajectories in TIP4P/2005 water over a range of temperatures and pressures.
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Affiliation(s)
- Carter T Butts
- Departments of Sociology, Statistics, Computer Science, and EECS, University of California, Irvine, California 92697, USA
| | - Rachel W Martin
- Departments of Chemistry and Molecular Biology and Biochemistry, University of California, Irvine, California 92697, USA
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45
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Walker AR, Wu B, Meisner J, Fayer MD, Martínez TJ. Proton Transfer from a Photoacid to a Water Wire: First Principles Simulations and Fast Fluorescence Spectroscopy. J Phys Chem B 2021; 125:12539-12551. [PMID: 34743512 DOI: 10.1021/acs.jpcb.1c07254] [Citation(s) in RCA: 4] [Impact Index Per Article: 1.3] [Reference Citation Analysis] [Abstract] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Indexed: 11/30/2022]
Abstract
Proton transfer reactions are ubiquitous in chemistry, especially in aqueous solutions. We investigate photoinduced proton transfer between the photoacid 8-hydroxypyrene-1,3,6-trisulfonate (HPTS) and water using fast fluorescence spectroscopy and ab initio molecular dynamics simulations. Photoexcitation causes rapid proton release from the HPTS hydroxyl. Previous experiments on HPTS/water described the progress from photoexcitation to proton diffusion using kinetic equations with two time constants. The shortest time constant has been interpreted as protonated and photoexcited HPTS evolving into an "associated" state, where the proton is "shared" between the HPTS hydroxyl and an originally hydrogen bonded water. The longer time constant has been interpreted as indicating evolution to a "solvent separated" state where the shared proton undergoes long distance diffusion. In this work, we refine the previous experimental results using very pure HPTS. We then use excited state ab initio molecular dynamics to elucidate the detailed molecular mechanism of aqueous excited state proton transfer in HPTS. We find that the initial excitation results in rapid rearrangement of water, forming a strong hydrogen bonded network (a "water wire") around HPTS. HPTS then deprotonates in ≤3 ps, resulting in a proton that migrates back and forth along the wire before localizing on a single water molecule. We find a near linear relationship between the emission wavelength and proton-HPTS distance over the simulated time scale, suggesting that the emission wavelength can be used as a ruler for the proton distance. Our simulations reveal that the "associated" state corresponds to a water wire with a mobile proton and that the diffusion of the proton away from this water wire (to a generalized "solvent-separated" state) corresponds to the longest experimental time constant.
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Affiliation(s)
- Alice R Walker
- Department of Chemistry, Stanford University, Stanford, California 94305, United States.,The PULSE Institute, Stanford University, Stanford, California 94305, United States.,SLAC National Accelerator Laboratory, Menlo Park, California 94025, United States
| | - Boning Wu
- Department of Chemistry, Stanford University, Stanford, California 94305, United States
| | - Jan Meisner
- Department of Chemistry, Stanford University, Stanford, California 94305, United States.,The PULSE Institute, Stanford University, Stanford, California 94305, United States.,SLAC National Accelerator Laboratory, Menlo Park, California 94025, United States
| | - Michael D Fayer
- Department of Chemistry, Stanford University, Stanford, California 94305, United States
| | - Todd J Martínez
- Department of Chemistry, Stanford University, Stanford, California 94305, United States.,The PULSE Institute, Stanford University, Stanford, California 94305, United States.,SLAC National Accelerator Laboratory, Menlo Park, California 94025, United States
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46
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Corti HR, Appignanesi GA, Barbosa MC, Bordin JR, Calero C, Camisasca G, Elola MD, Franzese G, Gallo P, Hassanali A, Huang K, Laria D, Menéndez CA, de Oca JMM, Longinotti MP, Rodriguez J, Rovere M, Scherlis D, Szleifer I. Structure and dynamics of nanoconfined water and aqueous solutions. THE EUROPEAN PHYSICAL JOURNAL. E, SOFT MATTER 2021; 44:136. [PMID: 34779954 DOI: 10.1140/epje/s10189-021-00136-4] [Citation(s) in RCA: 16] [Impact Index Per Article: 5.3] [Reference Citation Analysis] [Abstract] [Track Full Text] [Subscribe] [Scholar Register] [Received: 08/27/2021] [Accepted: 10/06/2021] [Indexed: 06/13/2023]
Abstract
This review is devoted to discussing recent progress on the structure, thermodynamic, reactivity, and dynamics of water and aqueous systems confined within different types of nanopores, synthetic and biological. Currently, this is a branch of water science that has attracted enormous attention of researchers from different fields interested to extend the understanding of the anomalous properties of bulk water to the nanoscopic domain. From a fundamental perspective, the interactions of water and solutes with a confining surface dramatically modify the liquid's structure and, consequently, both its thermodynamical and dynamical behaviors, breaking the validity of the classical thermodynamic and phenomenological description of the transport properties of aqueous systems. Additionally, man-made nanopores and porous materials have emerged as promising solutions to challenging problems such as water purification, biosensing, nanofluidic logic and gating, and energy storage and conversion, while aquaporin, ion channels, and nuclear pore complex nanopores regulate many biological functions such as the conduction of water, the generation of action potentials, and the storage of genetic material. In this work, the more recent experimental and molecular simulations advances in this exciting and rapidly evolving field will be reported and critically discussed.
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Affiliation(s)
- Horacio R Corti
- Departmento de Física de la Materia Condensada & Instituto de Nanociencia y Nanotecnología (CNEA-CONICET), Comisión Nacional de Energía Atómica, B1650LWP, Buenos Aires, Argentina.
| | - Gustavo A Appignanesi
- INQUISUR, Departamento de Química, Universidad Nacional del Sur (UNS)-CONICET, 8000, Bahía Blanca, Argentina
| | - Marcia C Barbosa
- Institute of Physics, Federal University of Rio Grande do Sul, 91501-970, Porto Alegre, Brazil
| | - J Rafael Bordin
- Department of Physics, Institute of Physics and Mathematics, 96050-500, Pelotas, RS, Brazil
| | - Carles Calero
- Secció de Física Estadística i Interdisciplinària - Departament de Física de la Matèria Condensada, Universitat de Barcelona & Institut de Nanociència i Nanotecnologia (IN2UB), Universitat de Barcelona, 08028, Barcelona, Spain
| | - Gaia Camisasca
- Dipartimento di Matematica e Fisica, Università degli Studi Roma Tre, 00146, Roma, Italy
| | - M Dolores Elola
- Departmento de Física de la Materia Condensada & Instituto de Nanociencia y Nanotecnología (CNEA-CONICET), Comisión Nacional de Energía Atómica, B1650LWP, Buenos Aires, Argentina
| | - Giancarlo Franzese
- Secció de Física Estadística i Interdisciplinària - Departament de Física de la Matèria Condensada, Universitat de Barcelona & Institut de Nanociència i Nanotecnologia (IN2UB), Universitat de Barcelona, 08028, Barcelona, Spain
| | - Paola Gallo
- Dipartimento di Matematica e Fisica, Università degli Studi Roma Tre, 00146, Roma, Italy
| | - Ali Hassanali
- Condensed Matter and Statistical Physics Section (CMSP), The International Center for Theoretical Physics (ICTP), Trieste, Italy
| | - Kai Huang
- Institute of Systems and Physical Biology, Shenzhen Bay Laboratory, Shenzhen, Guangdong, China
| | - Daniel Laria
- Departmento de Física de la Materia Condensada & Instituto de Nanociencia y Nanotecnología (CNEA-CONICET), Comisión Nacional de Energía Atómica, B1650LWP, Buenos Aires, Argentina
- Instituto de Química Física de los Materiales, Medio Ambiente y Energía (INQUIMAE-CONICET), Universidad de Buenos Aires, Buenos Aires, Argentina
| | - Cintia A Menéndez
- INQUISUR, Departamento de Química, Universidad Nacional del Sur (UNS)-CONICET, 8000, Bahía Blanca, Argentina
| | - Joan M Montes de Oca
- INQUISUR, Departamento de Química, Universidad Nacional del Sur (UNS)-CONICET, 8000, Bahía Blanca, Argentina
| | - M Paula Longinotti
- Instituto de Química Física de los Materiales, Medio Ambiente y Energía (INQUIMAE-CONICET), Universidad de Buenos Aires, Buenos Aires, Argentina
| | - Javier Rodriguez
- Departmento de Física de la Materia Condensada & Instituto de Nanociencia y Nanotecnología (CNEA-CONICET), Comisión Nacional de Energía Atómica, B1650LWP, Buenos Aires, Argentina
- Escuela de Ciencia y Tecnología, Universidad Nacional de General San Martín, San Martín, Buenos Aires, Argentina
| | - Mauro Rovere
- Dipartimento di Matematica e Fisica, Università degli Studi Roma Tre, 00146, Roma, Italy
| | - Damián Scherlis
- Instituto de Química Física de los Materiales, Medio Ambiente y Energía (INQUIMAE-CONICET), Universidad de Buenos Aires, Buenos Aires, Argentina
| | - Igal Szleifer
- Biomedical Engineering Department, Northwestern University, Evanston, USA
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47
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Calio PB, Li C, Voth GA. Resolving the Structural Debate for the Hydrated Excess Proton in Water. J Am Chem Soc 2021; 143:18672-18683. [PMID: 34723507 DOI: 10.1021/jacs.1c08552] [Citation(s) in RCA: 23] [Impact Index Per Article: 7.7] [Reference Citation Analysis] [Abstract] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Indexed: 02/06/2023]
Abstract
It has long been proposed that the hydrated excess proton in water (aka the solvated "hydronium" cation) likely has two limiting forms, that of the Eigen cation (H9O4+) and that of the Zundel cation (H5O2+). There has been debate over which of these two is the more dominant species and/or whether intermediate (or "distorted") structures between these two limits are the more realistic representation. Spectroscopy experiments have recently provided further results regarding the excess proton. These experiments show that the hydrated proton has an anisotropy reorientation time scale on the order of 1-2 ps. This time scale has been suggested to possibly contradict the picture of the more rapid "special pair dance" phenomenon for the hydrated excess proton, which is a signature of a distorted Eigen cation. The special pair dance was predicted from prior computational studies in which the hydrated central core hydronium structure continually switches (O-H···O)* special pair hydrogen-bond partners with the closest three water molecules, yielding on average a distorted Eigen cation with three equivalent and dynamically exchanging distortions. Through state-of-art simulations it is shown here that anisotropy reorientation time scales of the same magnitude are obtained that also include structural reorientations associated with the special pair dance, leading to a reinterpretation of the experimental results. These results and additional analyses point to a distorted and dynamic Eigen cation as the most prevalent hydrated proton species in aqueous acid solutions of dilute to moderate concentration, as opposed to a stabilized or a distorted (but not "dancing") Zundel cation.
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Affiliation(s)
- Paul B Calio
- Department of Chemistry, Chicago Center for Theoretical Chemistry, James Franck Institute, and Institute for Biophysical Dynamics, The University of Chicago, 5735 South Ellis Avenue, Chicago, Illinois 60637, United States
| | - Chenghan Li
- Department of Chemistry, Chicago Center for Theoretical Chemistry, James Franck Institute, and Institute for Biophysical Dynamics, The University of Chicago, 5735 South Ellis Avenue, Chicago, Illinois 60637, United States
| | - Gregory A Voth
- Department of Chemistry, Chicago Center for Theoretical Chemistry, James Franck Institute, and Institute for Biophysical Dynamics, The University of Chicago, 5735 South Ellis Avenue, Chicago, Illinois 60637, United States
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48
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Roet S, Daub CD, Riccardi E. Chemistrees: Data-Driven Identification of Reaction Pathways via Machine Learning. J Chem Theory Comput 2021; 17:6193-6202. [PMID: 34555907 PMCID: PMC8515787 DOI: 10.1021/acs.jctc.1c00458] [Citation(s) in RCA: 2] [Impact Index Per Article: 0.7] [Reference Citation Analysis] [Abstract] [Track Full Text] [Download PDF] [Figures] [Journal Information] [Subscribe] [Scholar Register] [Indexed: 12/03/2022]
Abstract
![]()
We propose to analyze
molecular dynamics (MD) output via a supervised machine
learning (ML) algorithm, the decision tree.
The approach aims to identify the predominant geometric features which
correlate with trajectories that transition between two arbitrarily
defined states. The data-driven algorithm aims to identify these features
without the bias of human “chemical intuition”. We demonstrate
the method by analyzing the proton exchange reactions in formic acid
solvated in small water clusters. The simulations were performed with ab initio MD combined with a method to efficiently sample
the rare event, path sampling. Our ML analysis identified relevant
geometric variables involved in the proton transfer reaction and how
they may change as the number of solvating water molecules changes.
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Affiliation(s)
- Sander Roet
- Department of Chemistry, Norwegian University of Science and Technology, Høgskoleringen 5, 7491 Trondheim, Norway
| | - Christopher D Daub
- Department of Chemistry, University of Helsinki, P.O. Box 55, FI-00014 Helsinki, Finland
| | - Enrico Riccardi
- Department of Informatics, UiO, Gaustadalléen 23B, 0373 Oslo, Norway
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49
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Li C, Voth GA. Using Constrained Density Functional Theory to Track Proton Transfers and to Sample Their Associated Free Energy Surface. J Chem Theory Comput 2021; 17:5759-5765. [PMID: 34468142 PMCID: PMC8444337 DOI: 10.1021/acs.jctc.1c00609] [Citation(s) in RCA: 6] [Impact Index Per Article: 2.0] [Reference Citation Analysis] [Abstract] [Grants] [Track Full Text] [Download PDF] [Figures] [Journal Information] [Subscribe] [Scholar Register] [Received: 06/20/2021] [Indexed: 11/30/2022]
Abstract
Ab initio molecular dynamics (AIMD) and quantum mechanics/molecular mechanics (QM/MM) methods are powerful tools for studying proton solvation, transfer, and transport processes in various environments. However, due to the high computational cost of such methods, achieving sufficient sampling of rare events involving excess proton motion-especially when Grotthuss proton shuttling is involved-usually requires enhanced free energy sampling methods to obtain informative results. Moreover, an appropriate collective variable (CV) that describes the effective position of the net positive charge defect associated with an excess proton is essential both for tracking the trajectory of the defect and for the free energy sampling of the processes associated with the resulting proton transfer and transport. In this work, such a CV is derived from first principles using constrained density functional theory (CDFT). This CV is applicable to a broad array of proton transport and transfer processes as studied via AIMD and QM/MM simulations.
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Affiliation(s)
- Chenghan Li
- Department of Chemistry,
Chicago Center for Theoretical Chemistry, James Franck Institute,
and Institute for Biophysical Dynamics, University of Chicago, Chicago, Illinois 60637, United States
| | - Gregory A. Voth
- Department of Chemistry,
Chicago Center for Theoretical Chemistry, James Franck Institute,
and Institute for Biophysical Dynamics, University of Chicago, Chicago, Illinois 60637, United States
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Havenith-Newen M, Adams EM, Head-Gordon T, Hao H, Rüttermann M, Leven I, Wirtz H. Proton Traffic Jam: Effect of Nanoconfinement and Acid Concentration on Proton Hopping Mechanism. Angew Chem Int Ed Engl 2021; 60:25419-25427. [PMID: 34402145 PMCID: PMC9293324 DOI: 10.1002/anie.202108766] [Citation(s) in RCA: 9] [Impact Index Per Article: 3.0] [Reference Citation Analysis] [Abstract] [Key Words] [Track Full Text] [Download PDF] [Figures] [Journal Information] [Subscribe] [Scholar Register] [Received: 07/01/2021] [Indexed: 11/06/2022]
Abstract
The properties of the water network in concentrated HCl acid pools in nanometer-sized reverse non-ionic micelles were probed with TeraHertz absorption, dielectric relaxation spectroscopy, and reactive force field simulations capable of describing proton hopping mechanisms. We identify that only at a critical micelle size of W0=9 do solvated proton complexes form in the water pool, accompanied by a change in mechanism from Grotthuss forward shuttling to one that favors local oscillatory hopping. This is due to a preference for H+ and Cl- ions to adsorb to the micelle interface, together with an acid concentration effect that causes a "traffic jam" in which the short-circuiting of the hydrogen-bonding motif of the hydronium ion decreases the forward hopping rate throughout the water interior even as the micelle size increases. These findings have implications for atmospheric chemistry, biochemical and biophysical environments, and energy materials, as transport of protons vital to these processes can be suppressed due to confinement, aggregation, and/or concentration.
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Affiliation(s)
- Martina Havenith-Newen
- Ruhr-Universit�t Bochum, Physical Chemistry, Universit�tsstr. 150, 44780, Bochum, GERMANY
| | - Ellen M Adams
- Ruhr-Universität Bochum: Ruhr-Universitat Bochum, Chemistry and Biochemistry, GERMANY
| | - Teresa Head-Gordon
- UC Berkeley: University of California Berkeley, Chemistry, UNITED STATES
| | - Hongxia Hao
- Berkeley Laboratory: E O Lawrence Berkeley National Laboratory, Chemistry, UNITED STATES
| | | | - Itai Leven
- Lawrence Livermore National Laboratory, chemistry, GERMANY
| | - Hanna Wirtz
- Ruhr-Universität Bochum: Ruhr-Universitat Bochum, Chemistry, GERMANY
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