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For: Huang S, Mahanta N, Begley TP, Ealick SE. Pseudouridine monophosphate glycosidase: a new glycosidase mechanism. Biochemistry 2012;51:9245-55. [PMID: 23066817 DOI: 10.1021/bi3006829] [Citation(s) in RCA: 24] [Impact Index Per Article: 2.0] [Reference Citation Analysis] [What about the content of this article? (0)] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Indexed: 02/02/2023]
Number Cited by Other Article(s)
1
Glänzer D, Pfeiffer M, Ribar A, Zeindl R, Tollinger M, Nidetzky B, Kreutz C. Efficient Synthetic Access to Stable Isotope Labelled Pseudouridine Phosphoramidites for RNA NMR Spectroscopy. Chemistry 2024:e202401193. [PMID: 38652483 DOI: 10.1002/chem.202401193] [Citation(s) in RCA: 0] [Impact Index Per Article: 0] [Reference Citation Analysis] [Abstract] [Key Words] [Grants] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Received: 03/25/2024] [Revised: 04/22/2024] [Accepted: 04/23/2024] [Indexed: 04/25/2024]
2
Lee J, Kim SH, Rhee S. Structure and function of the pseudouridine 5'-monophosphate glycosylase PUMY from Arabidopsis thaliana. RNA Biol 2024;21:1-10. [PMID: 38117089 PMCID: PMC10761123 DOI: 10.1080/15476286.2023.2293340] [Citation(s) in RCA: 0] [Impact Index Per Article: 0] [Reference Citation Analysis] [Abstract] [Key Words] [MESH Headings] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Accepted: 12/05/2023] [Indexed: 12/21/2023]  Open
3
Qiu L, Jing Q, Li Y, Han J. RNA modification: mechanisms and therapeutic targets. MOLECULAR BIOMEDICINE 2023;4:25. [PMID: 37612540 PMCID: PMC10447785 DOI: 10.1186/s43556-023-00139-x] [Citation(s) in RCA: 4] [Impact Index Per Article: 4.0] [Reference Citation Analysis] [Abstract] [Key Words] [Grants] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Received: 04/08/2023] [Accepted: 07/28/2023] [Indexed: 08/25/2023]  Open
4
Pfeiffer M, Ribar A, Nidetzky B. A selective and atom-economic rearrangement of uridine by cascade biocatalysis for production of pseudouridine. Nat Commun 2023;14:2261. [PMID: 37081027 PMCID: PMC10116470 DOI: 10.1038/s41467-023-37942-7] [Citation(s) in RCA: 2] [Impact Index Per Article: 2.0] [Reference Citation Analysis] [Abstract] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Received: 10/05/2022] [Accepted: 04/06/2023] [Indexed: 04/22/2023]  Open
5
Biocatalytic cascade transformations for the synthesis of C-nucleosides and N-nucleoside analogs. Curr Opin Biotechnol 2023;79:102873. [PMID: 36630750 DOI: 10.1016/j.copbio.2022.102873] [Citation(s) in RCA: 0] [Impact Index Per Article: 0] [Reference Citation Analysis] [Abstract] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Received: 10/14/2022] [Revised: 11/25/2022] [Accepted: 12/05/2022] [Indexed: 01/11/2023]
6
Li W, Girt GC, Radadiya A, Stewart JJP, Richards NGJ, Naismith JH. Experimental and computational snapshots of C-C bond formation in a C-nucleoside synthase. Open Biol 2023;13:220287. [PMID: 36629016 PMCID: PMC9832568 DOI: 10.1098/rsob.220287] [Citation(s) in RCA: 0] [Impact Index Per Article: 0] [Reference Citation Analysis] [Abstract] [Key Words] [Track Full Text] [Figures] [Journal Information] [Subscribe] [Scholar Register] [Indexed: 01/12/2023]  Open
7
Chen Z, Sato S, Geng Y, Zhang J, Liu HW. Identification of the Early Steps in Herbicidin Biosynthesis Reveals an Atypical Mechanism of C-Glycosylation. J Am Chem Soc 2022;144:15653-15661. [PMID: 35981300 DOI: 10.1021/jacs.2c05728] [Citation(s) in RCA: 0] [Impact Index Per Article: 0] [Reference Citation Analysis] [Abstract] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Indexed: 11/30/2022]
8
Ren D, Lee YH, Wang SA, Liu HW. Characterization of the Oxazinomycin Biosynthetic Pathway Revealing the Key Role of a Nonheme Iron-Dependent Mono-oxygenase. J Am Chem Soc 2022;144:10968-10977. [PMID: 35687050 DOI: 10.1021/jacs.2c04080] [Citation(s) in RCA: 0] [Impact Index Per Article: 0] [Reference Citation Analysis] [Abstract] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Indexed: 11/30/2022]
9
Li X, Li K, Guo W, Wen Y, Meng C, Wu B. Structure Characterization of Escherichia coli Pseudouridine Kinase PsuK. Front Microbiol 2022;13:926099. [PMID: 35783380 PMCID: PMC9247573 DOI: 10.3389/fmicb.2022.926099] [Citation(s) in RCA: 0] [Impact Index Per Article: 0] [Reference Citation Analysis] [Abstract] [Grants] [Track Full Text] [Download PDF] [Figures] [Journal Information] [Subscribe] [Scholar Register] [Received: 04/22/2022] [Accepted: 05/31/2022] [Indexed: 11/17/2022]  Open
10
Ren D, Kim M, Wang SA, Liu HW. Identification of a Pyrrole Intermediate Which Undergoes C-Glycosidation and Autoxidation to Yield the Final Product in Showdomycin Biosynthesis. Angew Chem Int Ed Engl 2021;60:17148-17154. [PMID: 34048627 DOI: 10.1002/anie.202105667] [Citation(s) in RCA: 5] [Impact Index Per Article: 1.7] [Reference Citation Analysis] [Abstract] [Key Words] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Received: 04/26/2021] [Indexed: 02/04/2023]
11
Identification of a Pyrrole Intermediate Which Undergoes C‐Glycosidation and Autoxidation to Yield the Final Product in Showdomycin Biosynthesis. Angew Chem Int Ed Engl 2021. [DOI: 10.1002/ange.202105667] [Citation(s) in RCA: 0] [Impact Index Per Article: 0] [Reference Citation Analysis] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Indexed: 11/07/2022]
12
Riley AT, Sanford TC, Woodard AM, Clerc EP, Sumita M. Semi-enzymatic synthesis of pseudouridine. Bioorg Med Chem Lett 2021;44:128105. [PMID: 33991631 DOI: 10.1016/j.bmcl.2021.128105] [Citation(s) in RCA: 0] [Impact Index Per Article: 0] [Reference Citation Analysis] [Abstract] [Key Words] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Received: 03/05/2021] [Revised: 05/05/2021] [Accepted: 05/09/2021] [Indexed: 12/01/2022]
13
Pfeiffer M, Nidetzky B. Reverse C-glycosidase reaction provides C-nucleotide building blocks of xenobiotic nucleic acids. Nat Commun 2020;11:6270. [PMID: 33293530 PMCID: PMC7722734 DOI: 10.1038/s41467-020-20035-0] [Citation(s) in RCA: 10] [Impact Index Per Article: 2.5] [Reference Citation Analysis] [Abstract] [Key Words] [MESH Headings] [Grants] [Track Full Text] [Download PDF] [Figures] [Journal Information] [Subscribe] [Scholar Register] [Received: 05/20/2020] [Accepted: 11/09/2020] [Indexed: 12/21/2022]  Open
14
Chen M, Witte CP. A Kinase and a Glycosylase Catabolize Pseudouridine in the Peroxisome to Prevent Toxic Pseudouridine Monophosphate Accumulation. THE PLANT CELL 2020;32:722-739. [PMID: 31907295 PMCID: PMC7054038 DOI: 10.1105/tpc.19.00639] [Citation(s) in RCA: 17] [Impact Index Per Article: 4.3] [Reference Citation Analysis] [Abstract] [MESH Headings] [Grants] [Track Full Text] [Subscribe] [Scholar Register] [Received: 08/19/2019] [Revised: 11/25/2019] [Accepted: 01/06/2020] [Indexed: 05/02/2023]
15
Wei B, Wang YK, Qiu WH, Wang SJ, Wu YH, Xu XW, Wang H. Discovery and mechanism of intestinal bacteria in enzymatic cleavage of C-C glycosidic bonds. Appl Microbiol Biotechnol 2020;104:1883-1890. [PMID: 31932892 DOI: 10.1007/s00253-019-10333-z] [Citation(s) in RCA: 14] [Impact Index Per Article: 3.5] [Reference Citation Analysis] [Abstract] [Key Words] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Received: 09/19/2019] [Revised: 12/17/2019] [Accepted: 12/23/2019] [Indexed: 12/28/2022]
16
Floresta G, Pistarà V, Christensen KE, Amata E, Marrazzo A, Gentile D, Rescifina A, Punzo F. A Pseudouridine Isoxazolidinyl Nucleoside Analogue Structural Analysis: A Morphological Approach. Molecules 2018;23:molecules23123381. [PMID: 30572684 PMCID: PMC6321120 DOI: 10.3390/molecules23123381] [Citation(s) in RCA: 0] [Impact Index Per Article: 0] [Reference Citation Analysis] [Abstract] [Key Words] [MESH Headings] [Track Full Text] [Download PDF] [Figures] [Journal Information] [Subscribe] [Scholar Register] [Received: 12/01/2018] [Revised: 12/13/2018] [Accepted: 12/17/2018] [Indexed: 12/03/2022]  Open
17
Liu M, Zhang G, Mahanta N, Lee Y, Hilty C. Measurement of Kinetics and Active Site Distances in Metalloenzymes Using Paramagnetic NMR with 13C Hyperpolarization. J Phys Chem Lett 2018;9:2218-2221. [PMID: 29624056 PMCID: PMC6200339 DOI: 10.1021/acs.jpclett.8b00350] [Citation(s) in RCA: 5] [Impact Index Per Article: 0.8] [Reference Citation Analysis] [Abstract] [Key Words] [Grants] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Indexed: 06/08/2023]
18
Floresta G, Pistarà V, Amata E, Dichiara M, Damigella A, Marrazzo A, Prezzavento O, Punzo F, Rescifina A. Molecular modeling studies of pseudouridine isoxazolidinyl nucleoside analogues as potential inhibitors of the pseudouridine 5'-monophosphate glycosidase. Chem Biol Drug Des 2017;91:519-525. [PMID: 28941159 DOI: 10.1111/cbdd.13113] [Citation(s) in RCA: 10] [Impact Index Per Article: 1.4] [Reference Citation Analysis] [Abstract] [Key Words] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Received: 05/31/2017] [Revised: 08/25/2017] [Accepted: 09/02/2017] [Indexed: 12/14/2022]
19
Palmu K, Rosenqvist P, Thapa K, Ilina Y, Siitonen V, Baral B, Mäkinen J, Belogurov G, Virta P, Niemi J, Metsä-Ketelä M. Discovery of the Showdomycin Gene Cluster from Streptomyces showdoensis ATCC 15227 Yields Insight into the Biosynthetic Logic of C-Nucleoside Antibiotics. ACS Chem Biol 2017;12:1472-1477. [PMID: 28418235 DOI: 10.1021/acschembio.7b00078] [Citation(s) in RCA: 29] [Impact Index Per Article: 4.1] [Reference Citation Analysis] [Abstract] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Indexed: 01/30/2023]
20
Thapa K, Oja T, Metsä-Ketelä M. Molecular evolution of the bacterial pseudouridine-5′-phosphate glycosidase protein family. FEBS J 2014;281:4439-49. [DOI: 10.1111/febs.12950] [Citation(s) in RCA: 10] [Impact Index Per Article: 1.0] [Reference Citation Analysis] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Received: 04/01/2014] [Revised: 06/26/2014] [Accepted: 07/30/2014] [Indexed: 10/25/2022]
21
Uremic solutes and risk of end-stage renal disease in type 2 diabetes: metabolomic study. Kidney Int 2014;85:1214-24. [PMID: 24429397 PMCID: PMC4072128 DOI: 10.1038/ki.2013.497] [Citation(s) in RCA: 163] [Impact Index Per Article: 16.3] [Reference Citation Analysis] [Abstract] [Track Full Text] [Download PDF] [Figures] [Journal Information] [Subscribe] [Scholar Register] [Received: 05/20/2013] [Revised: 09/18/2013] [Accepted: 10/10/2013] [Indexed: 12/17/2022]
22
Spenkuch F, Motorin Y, Helm M. Pseudouridine: still mysterious, but never a fake (uridine)! RNA Biol 2014;11:1540-54. [PMID: 25616362 PMCID: PMC4615568 DOI: 10.4161/15476286.2014.992278] [Citation(s) in RCA: 146] [Impact Index Per Article: 14.6] [Reference Citation Analysis] [Abstract] [Key Words] [MESH Headings] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Received: 06/26/2014] [Revised: 09/23/2014] [Accepted: 10/10/2014] [Indexed: 01/15/2023]  Open
23
Blauenburg B, Oja T, Klika KD, Metsä-Ketelä M. Chemoenzymatic synthesis of novel C-ribosylated naphthoquinones. ACS Chem Biol 2013;8:2377-82. [PMID: 24015959 DOI: 10.1021/cb400384c] [Citation(s) in RCA: 14] [Impact Index Per Article: 1.3] [Reference Citation Analysis] [Abstract] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Indexed: 11/28/2022]
24
Enzymatic C-glycosylation: Insights from the study of a complementary pair of plant O- and C-glucosyltransferases. PURE APPL CHEM 2013. [DOI: 10.1351/pac-con-12-11-24] [Citation(s) in RCA: 19] [Impact Index Per Article: 1.7] [Reference Citation Analysis] [Abstract] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Indexed: 01/10/2023]
25
Metsä-Ketelä M, Oja T, Taguchi T, Okamoto S, Ichinose K. Biosynthesis of pyranonaphthoquinone polyketides reveals diverse strategies for enzymatic carbon–carbon bond formation. Curr Opin Chem Biol 2013;17:562-70. [DOI: 10.1016/j.cbpa.2013.06.032] [Citation(s) in RCA: 24] [Impact Index Per Article: 2.2] [Reference Citation Analysis] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Received: 02/07/2013] [Revised: 05/30/2013] [Accepted: 06/25/2013] [Indexed: 11/26/2022]
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