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Mahadevan G, Brahma RK, Kini RM, Valiyaveettil S. Purification of Intramineral Peptides from Cuttlebones and In Vitro Activity in CaCO 3 Biomineralization. LANGMUIR : THE ACS JOURNAL OF SURFACES AND COLLOIDS 2023; 39:7249-7257. [PMID: 37201193 DOI: 10.1021/acs.langmuir.2c03433] [Citation(s) in RCA: 0] [Impact Index Per Article: 0] [Reference Citation Analysis] [Abstract] [Track Full Text] [Subscribe] [Scholar Register] [Indexed: 05/20/2023]
Abstract
Living organisms develop functional hard structures such as teeth, bones, and shells from calcium salts through mineralization for managing vital functions to sustain life. However, the exact mechanism or role of biomolecules such as proteins and peptides in the biomineralization process to form defect-free hierarchical structures in nature is poorly understood. In this study, we have extracted, purified, and characterized five major peptides (CBP1-CBP5) from the soluble organic materials (SOMs) of cuttlefish bone (CB) and used for the in vitro mineralization of calcium carbonate crystals. The SOMs induced nucleation of the calcite phase at low concentrations and the vaterite phase at high concentrations. The purified peptides nucleated calcite crystals and enhanced aggregation under laboratory conditions. Among five peptides, only CBP2 and CBP3 showed concentration-dependent nucleation, aggregation, and morphological changes of the calcite crystals within 12 h. Circular dichroism studies showed that the peptides CBP2 and CBP3 are in alpha helix and β-sheet conformation, respectively, in solution. CBP1 and CBP4 and CBP5 are in random coil and β-sheet conformation, respectively. In addition, the peptides showed different sizes in solution in the absence (∼27 nm, low aggregation) and presence (∼118 nm, high aggregation) of calcium ions. Aragonite crystals with needle-type morphologies were nucleated in the presence of Mg2+ ions in solution. Overall, exploring the activities of such intramineral peptides from CB help to unravel the mechanism of calcium salt deposition in nature.
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Affiliation(s)
- Gomathi Mahadevan
- Department of Chemistry, National University of Singapore, 3 Science Drive 3, Singapore 117543, Singapore
| | - Rajeev Kungur Brahma
- Department of Biological Sciences, 14 science drive 4, National University of Singapore, Singapore 117543, Singapore
| | - R Manjunatha Kini
- Department of Biological Sciences, 14 science drive 4, National University of Singapore, Singapore 117543, Singapore
- Department of Pharmacology, Yong Loo Lin School of Medicine, National University of Singapore, 16 Medical Drive, Singapore 117600, Singapore
| | - Suresh Valiyaveettil
- Department of Chemistry, National University of Singapore, 3 Science Drive 3, Singapore 117543, Singapore
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Klose D, Vemulapalli SPB, Richman M, Rudnick S, Aisha V, Abayev M, Chemerovski M, Shviro M, Zitoun D, Majer K, Wili N, Goobes G, Griesinger C, Jeschke G, Rahimipour S. Cu 2+-Induced self-assembly and amyloid formation of a cyclic D,L-α-peptide: structure and function. Phys Chem Chem Phys 2022; 24:6699-6715. [PMID: 35234757 DOI: 10.1039/d1cp05415e] [Citation(s) in RCA: 0] [Impact Index Per Article: 0] [Reference Citation Analysis] [Abstract] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Indexed: 11/21/2022]
Abstract
In a wide spectrum of neurodegenerative diseases, self-assembly of pathogenic proteins to cytotoxic intermediates is accelerated by the presence of metal ions such as Cu2+. Only low concentrations of these early transient oligomeric intermediates are present in a mixture of species during fibril formation, and hence information on the extent of structuring of these oligomers is still largely unknown. Here, we investigate dimers as the first intermediates in the Cu2+-driven aggregation of a cyclic D,L-α-peptide architecture. The unique structural and functional properties of this model system recapitulate the self-assembling properties of amyloidogenic proteins including β-sheet conformation and cross-interaction with pathogenic amyloids. We show that a histidine-rich cyclic D,L-α-octapeptide binds Cu2+ with high affinity and selectivity to generate amyloid-like cross-β-sheet structures. By taking advantage of backbone amide methylation to arrest the self-assembly at the dimeric stage, we obtain structural information and characterize the degree of local order for the dimer. We found that, while catalytic amounts of Cu2+ promote aggregation of the peptide to fibrillar structures, higher concentrations dose-dependently reduce fibrillization and lead to formation of spherical particles, showing self-assembly to different polymorphs. For the initial self-assembly step to the dimers, we found that Cu2+ is coordinated on average by two histidines, similar to self-assembled peptides, indicating that a similar binding interface is perpetuated during Cu2+-driven oligomerization. The dimer itself is found in heterogeneous conformations that undergo dynamic exchange, leading to the formation of different polymorphs at the initial stage of the aggregation process.
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Affiliation(s)
- Daniel Klose
- Department of Chemistry and Applied Biosciences, ETH Zürich, 8093 Zürich, Switzerland.
| | - Sahithya Phani Babu Vemulapalli
- NMR-based Structural Biology, Max Planck Institute for Biophysical Chemistry, 37077 Göttingen, Germany. .,Institute for Chemistry and Biology of the Marine Environment, University of Oldenburg, 26129 Oldenburg, Germany
| | - Michal Richman
- Department of Chemistry, Bar-Ilan University, Ramat-Gan 5290002, Israel.
| | - Safra Rudnick
- Department of Chemistry, Bar-Ilan University, Ramat-Gan 5290002, Israel. .,Bar-Ilan Institute for Technology and Advanced Materials (BINA), Bar-Ilan University, Ramat-Gan 5290002, Israel
| | - Vered Aisha
- Department of Chemistry, Bar-Ilan University, Ramat-Gan 5290002, Israel.
| | - Meital Abayev
- Department of Chemistry, Bar-Ilan University, Ramat-Gan 5290002, Israel.
| | - Marina Chemerovski
- Department of Chemistry, Bar-Ilan University, Ramat-Gan 5290002, Israel.
| | - Meital Shviro
- Department of Chemistry, Bar-Ilan University, Ramat-Gan 5290002, Israel. .,Bar-Ilan Institute for Technology and Advanced Materials (BINA), Bar-Ilan University, Ramat-Gan 5290002, Israel
| | - David Zitoun
- Department of Chemistry, Bar-Ilan University, Ramat-Gan 5290002, Israel. .,Bar-Ilan Institute for Technology and Advanced Materials (BINA), Bar-Ilan University, Ramat-Gan 5290002, Israel
| | - Katharina Majer
- Department of Chemistry and Applied Biosciences, ETH Zürich, 8093 Zürich, Switzerland.
| | - Nino Wili
- Department of Chemistry and Applied Biosciences, ETH Zürich, 8093 Zürich, Switzerland.
| | - Gil Goobes
- Department of Chemistry, Bar-Ilan University, Ramat-Gan 5290002, Israel.
| | - Christian Griesinger
- NMR-based Structural Biology, Max Planck Institute for Biophysical Chemistry, 37077 Göttingen, Germany.
| | - Gunnar Jeschke
- Department of Chemistry and Applied Biosciences, ETH Zürich, 8093 Zürich, Switzerland.
| | - Shai Rahimipour
- Department of Chemistry, Bar-Ilan University, Ramat-Gan 5290002, Israel.
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Saharay M, Kirkpatrick RJ. Ab initio and metadynamics studies on the role of essential functional groups in biomineralization of calcium carbonate and environmental situations. Phys Chem Chem Phys 2014; 16:26843-54. [PMID: 25375213 DOI: 10.1039/c4cp03904a] [Citation(s) in RCA: 10] [Impact Index Per Article: 1.0] [Reference Citation Analysis] [Abstract] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Indexed: 11/21/2022]
Abstract
The interactions of proteins, polysaccharides and other biomolecules with Ca(2+), CO3(2-), and water are central to the understanding of biomineralization and crystallization of calcium carbonate (CaCO3), and their association with the natural organic matter (NOM) in the environment. A molecular-level investigation of how such interactions and thermodynamic forces drive the nucleation and growth of crystalline CaCO3 in living organisms remains elusive. This paper presents ab initio and metadynamics studies of the interactions of Ca(2+), CO3(2-), and water with the essential amino acids/functional groups, e.g. arginine/NH2(+), aspartate or glutamate/COO(-), aspartic or glutamic acid/COOH, and serine/OH, of protein/organic molecules that are likely to be critical to the biomineralization of CaCO3. These functional groups were modeled as guanidinium (Gdm(+)), acetate (AcO(-)), acetic acid (AcOH), and ethanol (EtOH) molecules, respectively. The Gdm(+)-Ca(2+)-CO3(2-) and AcO(-)-Ca(2+)-CO3(2-) systems were found to form stable ion-complexes irrespective of the presence of near neighbor water molecules. The strong electrostatic interactions of these functional groups with their counter-ions significantly affect the fundamental vibrational frequencies of the functional groups, mainly the NH2 stretching (str.) and degenerate (deg.) scissors modes of Gdm(+) and -C=OO, CC, and CO str. modes of AcO(-). The free-energy calculations reveal that EtOH forms weakly bound molecular complexes with the Ca(2+)-CO3(2-) ion pairs in water. However, the interaction strength of EtOH with crystalline CaCO3 can increase significantly due to combined effect of H-bond and electron donor acceptor (EDA) type of interactions. These results indicate that -NH2(+) and -COO(-) bearing molecules serve as potential nucleation sites promoting crystallization of CaCO3 phases while -OH bearing molecules are likely to control the morphology of the crystalline phases by attaching to the growing crystal surfaces.
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Affiliation(s)
- Moumita Saharay
- Center for Modelling Simulation and Design, University of Hyderabad, Hyderabad 500046, Telangana, India.
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Guru PS, Dash S. Sorption on eggshell waste--a review on ultrastructure, biomineralization and other applications. Adv Colloid Interface Sci 2014; 209:49-67. [PMID: 24456801 DOI: 10.1016/j.cis.2013.12.013] [Citation(s) in RCA: 72] [Impact Index Per Article: 7.2] [Reference Citation Analysis] [Abstract] [Key Words] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Received: 02/26/2013] [Revised: 12/19/2013] [Accepted: 12/19/2013] [Indexed: 11/26/2022]
Abstract
The structure, adsorption behavior and applications of eggshell waste materials have been reviewed. The ultrastructure of eggshell particles has been discussed to understand the pore structure as well as the surface geometry of the materials leading to its multifarious applicability. Besides, the ultrastructure studies give full information regarding the chemical constituents of egghell particles as well as eggshell membranes. The process of biomineralization in living organisms, their consequent effect of controlling the formation of inorganic-organic composites propelling their application in biomimetic designing of advanced composites with optimized novel properties leading to advances in materials design have been discussed. Utilization of eggshell waste materials for the removal of organic dyes and heavy inorganic ions has been reviewed with suitable models for understanding their adsorption quality and capacity. The applications of these materials in various fields of research have been extensively discussed.
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Zhang G, Li C, Zhang X, Guo X, Liu Y, He W, Liu J, Wang H, Gao Y. Biogenic synthesis of photocatalytically active ZnS/ESM composites. RSC Adv 2014. [DOI: 10.1039/c4ra00021h] [Citation(s) in RCA: 9] [Impact Index Per Article: 0.9] [Reference Citation Analysis] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Indexed: 11/21/2022] Open
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Paradís-Bas M, Tulla-Puche J, Zompra AA, Albericio F. RADA-16: A Tough Peptide - Strategies for Synthesis and Purification. European J Org Chem 2013. [DOI: 10.1002/ejoc.201300612] [Citation(s) in RCA: 8] [Impact Index Per Article: 0.7] [Reference Citation Analysis] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Indexed: 12/25/2022]
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Roles of larval sea urchin spicule SM50 domains in organic matrix self-assembly and calcium carbonate mineralization. J Struct Biol 2013; 183:205-15. [PMID: 23796503 DOI: 10.1016/j.jsb.2013.06.004] [Citation(s) in RCA: 38] [Impact Index Per Article: 3.5] [Reference Citation Analysis] [Abstract] [Key Words] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Received: 02/06/2013] [Revised: 05/29/2013] [Accepted: 06/09/2013] [Indexed: 12/31/2022]
Abstract
The larval spicule matrix protein SM50 is the most abundant occluded matrix protein present in the mineralized larval sea urchin spicule. Recent evidence implicates SM50 in the stabilization of amorphous calcium carbonate (ACC). Here, we investigate the molecular interactions of SM50 and CaCO3 by investigating the function of three major domains of SM50 as small ubiquitin-like modifier (SUMO) fusion proteins - a C-type lectin domain (CTL), a glycine rich region (GRR) and a proline rich region (PRR). Under various mineralization conditions, we find that SUMO-CTL is monomeric and influences CaCO3 mineralization, SUMO-GRR aggregates into large protein superstructures and SUMO-PRR modifies the early CaCO3 mineralization stages as well as growth. The combination of these mineralization and self-assembly properties of the major domains synergistically enable the full-length SM50 to fulfill functions of constructing the organic spicule matrix as well as performing necessary mineralization activities such as Ca(2+) ion recruitment and organization to allow for proper growth and development of the mineralized larval sea urchin spicule.
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Richman M, Wilk S, Chemerovski M, Wärmländer SKTS, Wahlström A, Gräslund A, Rahimipour S. In vitro and mechanistic studies of an antiamyloidogenic self-assembled cyclic D,L-α-peptide architecture. J Am Chem Soc 2013; 135:3474-84. [PMID: 23360549 DOI: 10.1021/ja310064v] [Citation(s) in RCA: 81] [Impact Index Per Article: 7.4] [Reference Citation Analysis] [Abstract] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Indexed: 11/28/2022]
Abstract
Misfolding of the Aβ protein and its subsequent aggregation into toxic oligomers are related to Alzheimer's disease. Although peptides of various sequences can self-assemble into amyloid structures, these structures share common three-dimensional features that may promote their cross-reaction. Given the significant similarities between amyloids and the architecture of self-assembled cyclic D,L-α-peptide, we hypothesized that the latter may bind and stabilize a nontoxic form of Aβ, thereby preventing its aggregation into toxic forms. By screening a focused library of six-residue cyclic D,L-α-peptides and optimizing the activity of a lead peptide, we found one cyclic D,L-α-peptide (CP-2) that interacts strongly with Aβ and inhibits its aggregation. In transmission electron microscopy, optimized thioflavin T and cell survival assays, CP-2 inhibits the formation of Aβ aggregates, entirely disassembles preformed aggregated and fibrillar Aβ, and protects rat pheochromocytoma PC12 cells from Aβ toxicity, without inducing any toxicity by itself. Using various immunoassays, circular dichroism spectroscopy, photoinduced cross-linking of unmodified proteins (PICUP) combined with SDS/PAGE, and NMR, we probed the mechanisms underlying CP-2's antiamyloidogenic activity. NMR spectroscopy indicates that CP-2 interacts with Aβ through its self-assembled conformation and induces weak secondary structure in Aβ. Upon coincubation, CP-2 changes the aggregation pathway of Aβ and alters its oligomer distribution by stabilizing small oligomers (1-3 mers). Our results support studies suggesting that toxic early oligomeric states of Aβ may be composed of antiparallel β-peptide structures and that the interaction of Aβ with CP-2 promotes formation of more benign parallel β-structures. Further studies will show whether these kinds of abiotic cyclic D,L-α-peptides are also beneficial as an intervention in related in vivo models.
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Affiliation(s)
- Michal Richman
- Department of Chemistry, Bar-Ilan University, Ramat-Gan 5290, Israel
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9
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Nemoto M, Wang Q, Li D, Pan S, Matsunaga T, Kisailus D. Proteomic analysis from the mineralized radular teeth of the giant Pacific chiton, Cryptochiton stelleri
(Mollusca). Proteomics 2012; 12:2890-4. [DOI: 10.1002/pmic.201100473] [Citation(s) in RCA: 35] [Impact Index Per Article: 2.9] [Reference Citation Analysis] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Received: 09/09/2011] [Revised: 05/19/2012] [Accepted: 07/03/2012] [Indexed: 11/08/2022]
Affiliation(s)
- Michiko Nemoto
- Department of Chemical and Environmental Engineering; University of California; Riverside CA USA
- Division of Biotechnology and Lifescience; Institute of Engineering; Tokyo University of Agriculture and Technology; Koganei Tokyo Japan
| | - Qianqian Wang
- Department of Chemical and Environmental Engineering; University of California; Riverside CA USA
| | - Dongsheng Li
- Department of Chemical and Environmental Engineering; University of California; Riverside CA USA
| | - Songqin Pan
- Institute for Integrative Genome Biology and Department of Botany and Plant Sciences; University of California; Riverside California USA
| | - Tadashi Matsunaga
- Division of Biotechnology and Lifescience; Institute of Engineering; Tokyo University of Agriculture and Technology; Koganei Tokyo Japan
| | - David Kisailus
- Department of Chemical and Environmental Engineering; University of California; Riverside CA USA
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10
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Schrier SB, Sayeg MK, Gray JJ. Prediction of calcite morphology from computational and experimental studies of mutations of a de novo-designed peptide. LANGMUIR : THE ACS JOURNAL OF SURFACES AND COLLOIDS 2011; 27:11520-11527. [PMID: 21797243 DOI: 10.1021/la201904k] [Citation(s) in RCA: 3] [Impact Index Per Article: 0.2] [Reference Citation Analysis] [Abstract] [MESH Headings] [Track Full Text] [Subscribe] [Scholar Register] [Indexed: 05/31/2023]
Abstract
Many organisms use macromolecules, often proteins or peptides, to control the growth of inorganic crystals into complex materials. The ability to model peptide-mineral interactions accurately could allow for the design of novel peptides to produce materials with desired properties. Here, we tested a computational algorithm developed to predict the structure of peptides on mineral surfaces. Using this algorithm, we analyzed energetic and structural differences between a 16-residue peptide (bap4) designed to interact with a calcite growth plane and single- and double-point mutations of the charged residues. Currently, no experimental method is available to resolve the structures of proteins on solid surfaces, which precludes benchmarking for computational models. Therefore, to test the models, we chemically synthesized each peptide and analyzed its effects on calcite crystal growth. Whereas bap4 affected the crystal growth by producing heavily stepped corners and edges, point mutants had variable influences on morphology. Calculated residue-specific binding energies correlated with experimental observations; point mutations of residues predicted to be crucial to surface interactions produced morphologies most similar to unmodified calcite. These results suggest that peptide conformation plays a role in mineral interactions and that the computational model supplies valid energetic and structural data that can provide information about expected crystal morphology.
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Affiliation(s)
- Sarah B Schrier
- Department of Chemical and Biomolecular Engineering, Johns Hopkins University, Baltimore, Maryland 21218, USA
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11
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Masica DL, Schrier SB, Specht EA, Gray JJ. De novo design of peptide-calcite biomineralization systems. J Am Chem Soc 2010; 132:12252-62. [PMID: 20712308 DOI: 10.1021/ja1001086] [Citation(s) in RCA: 34] [Impact Index Per Article: 2.4] [Reference Citation Analysis] [Abstract] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Indexed: 02/08/2023]
Abstract
Many organisms produce complex, hierarchically structured, inorganic materials via protein-influenced crystal growth--a process known as biomineralization. Understanding this process would shed light on hard-tissue formation and guide efforts to develop biomaterials. We created and tested a computational method to design protein-biomineralization systems. The algorithm folds a protein from a fully extended structure and simultaneously optimizes the fold, orientation, and sequence of the protein adsorbed to a crystal surface. We used the algorithm to design peptides (16 residues) to modify calcite (CaCO(3)) crystallization. We chemically synthesized six peptides that were predicted to bind different states of a calcite growth plane. All six peptides dramatically affected calcite crystal growth (as observed by scanning electron microscopy), and the effects were dependent on the targeted state of the {001} growth plane. Additionally, we synthesized and assayed scrambled variants of all six designed peptides to distinguish cases where sequence composition determines the interactions versus cases where sequence order (and presumably structure) plays a role. Scrambled variants of negatively charged peptides also had dramatic effects on calcite crystallization; in contrast, scrambled variants of positively charged peptides had a variable effect on crystallization, ranging from dramatic to mild. Special emphasis is often placed on acidic protein residues in calcified tissue mineralization; the work presented here suggests an important role for basic residues as well. In particular, this work implicates a potential role for basic residues in sequence-order specificity for peptide-mineral interactions.
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Affiliation(s)
- David L Masica
- Program in Molecular Biophysics, Johns Hopkins University, Baltimore, Maryland 21218, USA
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12
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Portugal SJ, Cooper HJ, Zampronio CG, Wallace LL, Cassey P. Can museum egg specimens be used for proteomic analyses? Proteome Sci 2010; 8:40. [PMID: 20630081 PMCID: PMC2927511 DOI: 10.1186/1477-5956-8-40] [Citation(s) in RCA: 10] [Impact Index Per Article: 0.7] [Reference Citation Analysis] [Abstract] [Track Full Text] [Download PDF] [Figures] [Journal Information] [Subscribe] [Scholar Register] [Received: 03/12/2010] [Accepted: 07/14/2010] [Indexed: 11/28/2022] Open
Abstract
Background Mass spectrometry and proteomic analyses have become powerful tools for the analysis of proteins and peptides. Investigation of proteins contained in the various layers of the avian eggshell has focused entirely on domesticated species. It has been widely assumed that this existing research can inform the study of wild bird species despite the fact that the vast majority of the diversity in avian species (~95%) exists outside the Orders to which domestic and poultry species belong. Museum collections offer a potentially valuable source of material for studying composition of wild avian eggshell matrix proteins. We used museum and fresh eggshells of common quails Coturnix coturnix to compare the protein composition of their organic matrices. Four eggs of domestic chickens were analysed simultaneously as a control for comparison to the fresh and museum quail eggs. The determination of the proteins was carried out using enzymatic cleavage followed by high-performance mass spectrometry. Results We found that some of the expected key eggshell proteins (3 out of 11) were not present in the samples of museum quail egg. These proteins were either entirely absent from the museum eggs or the technique was unable to detect them. There was no pattern in the absent proteins in the sense of protein function or where they are located within the eggshell. Conclusion We conclude it is likely that such studies on museum specimens using a proteomic approach will be limited in coverage of proteins and may, therefore, be misleading.
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Affiliation(s)
- Steven J Portugal
- The Centre for Ornithology, School of Biosciences, College of Life and Environmental Sciences, The University of Birmingham, Edgbaston, Birmingham, B15 2TT, UK.
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A magic eggshell: Cu2+ reacts with S2− to produce metal Cu, rather than CuS. CHINESE SCIENCE BULLETIN-CHINESE 2010. [DOI: 10.1007/s11434-010-3197-1] [Citation(s) in RCA: 0] [Impact Index Per Article: 0] [Reference Citation Analysis] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Indexed: 10/19/2022]
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14
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Zhang RH, Chen LL, Ren YZ, Wang JY. Brewing MnWO4 microspheres on the eggshell membrane at room temperature. RUSS J INORG CHEM+ 2009. [DOI: 10.1134/s003602360908004x] [Citation(s) in RCA: 4] [Impact Index Per Article: 0.3] [Reference Citation Analysis] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Indexed: 11/23/2022]
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Arias JL, Fernández MS. Polysaccharides and proteoglycans in calcium carbonate-based biomineralization. Chem Rev 2008; 108:4475-82. [PMID: 18652513 DOI: 10.1021/cr078269p] [Citation(s) in RCA: 157] [Impact Index Per Article: 9.8] [Reference Citation Analysis] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Indexed: 11/28/2022]
Affiliation(s)
- José L Arias
- Faculty of Veterinary and Animal Sciences, and Center for Advanced Interdisciplinary Research in Materials (CIMAT), Universidad de Chile, Casilla 2 Correo 15, Santiago, Chile.
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Puverel S, Houlbrèque F, Tambutté E, Zoccola D, Payan P, Caminiti N, Tambutté S, Allemand D. Evidence of low molecular weight components in the organic matrix of the reef building coral, Stylophora pistillata. Comp Biochem Physiol A Mol Integr Physiol 2007; 147:850-6. [PMID: 17499533 DOI: 10.1016/j.cbpa.2006.10.045] [Citation(s) in RCA: 13] [Impact Index Per Article: 0.8] [Reference Citation Analysis] [Abstract] [MESH Headings] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Received: 06/14/2006] [Revised: 10/31/2006] [Accepted: 10/31/2006] [Indexed: 11/29/2022]
Abstract
Biominerals contain both inorganic and organic components. Organic components are collectively termed the organic matrix, and this matrix has been reported to play a crucial role in mineralization. Several matrix proteins have been characterized in vertebrates, but only a few in invertebrates, primarily in Molluscs and Echinoderms. Methods classically used to extract organic matrix proteins eliminate potential low molecular weight matrix components, since cut-offs ranging from 3.5 to 10 kDa are used to desalt matrix extracts. Consequently, the presence of such components remains unknown and these are never subjected to further analyses. In the present study, we have used microcolonies from the Scleractinian coral Stylophora pistillata to study newly synthesized matrix components by labelling them with 14C-labelled amino acids. Radioactive matrix components were investigated by a method in which both total organic matrix and fractions of matrix below and above 5 kDa were analyzed. Using this method and SDS-PAGE analyses, we were able to detect the presence of low molecular mass matrix components (<3.5 kDa), but no free amino acids in the skeletal organic matrix. Since more than 98% of the 14C-labelled amino acids were incorporated into low molecular weight molecules, these probably form the bulk of newly synthesized organic matrix components. Our results suggest that these low molecular weight components may be peptides, which can be involved in the regulation of coral skeleton mineralization.
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Affiliation(s)
- S Puverel
- Centre Scientifique de Monaco, av. St Martin, MC 98000 Monaco, Monaco
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Su H, Wang N, Dong Q, Zhang D. Incubating lead selenide nanoclusters and nanocubes on the eggshell membrane at room temperature. J Memb Sci 2006. [DOI: 10.1016/j.memsci.2006.07.010] [Citation(s) in RCA: 18] [Impact Index Per Article: 1.0] [Reference Citation Analysis] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Indexed: 10/24/2022]
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Liu J, Wu Q, Ding Y. Self-Assembly and Fluorescent Modification of Hydroxyapatite Nanoribbon Spherulites. Eur J Inorg Chem 2005. [DOI: 10.1002/ejic.200500207] [Citation(s) in RCA: 43] [Impact Index Per Article: 2.3] [Reference Citation Analysis] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Indexed: 11/07/2022]
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Ajikumar PK, Vivekanandan S, Lakshminarayanan R, Jois SDS, Kini RM, Valiyaveettil S. Mimicking the Function of Eggshell Matrix Proteins: The Role of Multiplets of Charged Amino Acid Residues and Self-Assembly of Peptides in Biomineralization. Angew Chem Int Ed Engl 2005; 44:5476-9. [PMID: 16059950 DOI: 10.1002/anie.200500261] [Citation(s) in RCA: 30] [Impact Index Per Article: 1.6] [Reference Citation Analysis] [MESH Headings] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Indexed: 11/10/2022]
Affiliation(s)
- Parayil Kumaran Ajikumar
- Department of Chemistry and Singapore-MIT Alliance, National University of Singapore, 3 Science Drive 3, Singapore 117543, Singapore
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Ajikumar PK, Vivekanandan S, Lakshminarayanan R, Jois SDS, Kini RM, Valiyaveettil S. Mimicking the Function of Eggshell Matrix Proteins: The Role of Multiplets of Charged Amino Acid Residues and Self-Assembly of Peptides in Biomineralization. Angew Chem Int Ed Engl 2005. [DOI: 10.1002/ange.200500261] [Citation(s) in RCA: 4] [Impact Index Per Article: 0.2] [Reference Citation Analysis] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Indexed: 11/07/2022]
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Lakshminarayanan R, Joseph JS, Kini RM, Valiyaveettil S. Structure−Function Relationship of Avian Eggshell Matrix Proteins: A Comparative Study of Two Major Eggshell Matrix Proteins, Ansocalcin and OC-17. Biomacromolecules 2005; 6:741-51. [PMID: 15762638 DOI: 10.1021/bm049423+] [Citation(s) in RCA: 34] [Impact Index Per Article: 1.8] [Reference Citation Analysis] [Abstract] [MESH Headings] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Indexed: 11/29/2022]
Abstract
The role of individual matrix proteins in avian eggshell calcification is poorly understood despite numerous attempts to characterize and localize their presence in the eggshell matrix. Ansocalcin, the major matrix protein from goose eggshell, was found to induce the formation of calcite crystal aggregates under in vitro. Owing to its high similarity with the chicken eggshell matrix protein ovocleidin 17 (OC-17), a comparative investigation has been carried out to understand the structure-function relationship. RP-HPLC shows that ansocalcin is the major component in extracts of goose eggshells before and after bleach treatment. However, OC-17 was observed in minute quantities in the extract of bleach-treated chicken eggshells. In vitro crystal growth experiments showed that OC-17 and ansocalcin interact differently with the calcite crystals formed. Circular dichroism, intrinsic tryptophan fluorescence, and dynamic light scattering studies showed that, under the conditions used in our experiments, OC-17 does not aggregate in solution or induce the nucleation of calcite aggregates in the concentration range used. These observations indicate that OC-17 and ansocalcin play different roles in the eggshell calcification. To our knowledge, this is the first report on the comparison of properties of homologous eggshell proteins that belong to the same phylogeny.
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Assembling Synthesis of Barium Chromate Nano-superstructures Using Eggshell Membrane as Template. B KOREAN CHEM SOC 2004. [DOI: 10.5012/bkcs.2004.25.12.1775] [Citation(s) in RCA: 13] [Impact Index Per Article: 0.7] [Reference Citation Analysis] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Indexed: 11/20/2022]
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Fernandez MS, Passalacqua K, Arias JI, Arias JL. Partial biomimetic reconstitution of avian eggshell formation. J Struct Biol 2004; 148:1-10. [PMID: 15363783 DOI: 10.1016/j.jsb.2004.05.003] [Citation(s) in RCA: 42] [Impact Index Per Article: 2.1] [Reference Citation Analysis] [Abstract] [MESH Headings] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Received: 11/19/2003] [Revised: 05/07/2004] [Indexed: 11/18/2022]
Abstract
The avian eggshell is a biocomposite ceramic consisting of minute amounts of organic matrix and a crystalline calcium carbonate (calcite) filler. It is formed by a well regulated spatio-temporal assembling process, where extracellular matrix proteins, especially the sulfated glycosaminoglycan anionic sites of specific proteoglycans, have been involved in nucleation and growth of the inorganic crystalline phase. Together with such extracellular matrix molecules, the activity of carbonic anhydrase, is crucial for the normal eggshell formation. Here, we studied the effect of dermatan sulfate and carbonic anhydrase on the in vitro calcification of non-mineralized eggshell membrane-mammillae substrate at different pH and incubation times. Crystal morphology was analyzed by scanning electron microscopy. Crystal nucleation and growth was delayed at lower pH. Dermatan sulfate modified crystal morphology producing aggregates of large calcite crystals exhibiting a columnar morphology, contributing to the eggshell texture development. Carbonic anhydrase increased the velocity of crystal growth and eventually contributed to the fusion of the crystal aggregates to each other. Although, the effect of other macromolecules could not be ruled out, the combinatory effect of proteoglycans and carbonic anhydrase seems to be important for the control of eggshell formation.
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Affiliation(s)
- M S Fernandez
- Faculty of Veterinary and Animal Sciences, University of Chile, Santiago
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Wustman BA, Morse DE, Evans JS. Structural characterization of the N-terminal mineral modification domains from the molluscan crystal-modulating biomineralization proteins, AP7 and AP24. Biopolymers 2004; 74:363-76. [PMID: 15222016 DOI: 10.1002/bip.20086] [Citation(s) in RCA: 37] [Impact Index Per Article: 1.9] [Reference Citation Analysis] [Abstract] [MESH Headings] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Indexed: 11/10/2022]
Abstract
The AP7 and AP24 proteins represent a class of mineral-interaction polypeptides that are found in the aragonite-containing nacre layer of mollusk shell (H. rufescens). These proteins have been shown to preferentially interfere with calcium carbonate mineral growth in vitro. It is believed that both proteins play an important role in aragonite polymorph selection in the mollusk shell. Previously, we demonstrated the 1-30 amino acid (AA) N-terminal sequences of AP7 and AP24 represent mineral interaction/modification domains in both proteins, as evidenced by their ability to frustrate calcium carbonate crystal growth at step edge regions. In this present report, using free N-terminal, C(alpha)-amide "capped" synthetic polypeptides representing the 1-30 AA regions of AP7 (AP7-1 polypeptide) and AP24 (AP24-1 polypeptide) and NMR spectroscopy, we confirm that both N-terminal sequences possess putative Ca (II) interaction polyanionic sequence regions (2 x -DD- in AP7-1, -DDDED- in AP24-1) that are random coil-like in structure. However, with regard to the remaining sequences regions, each polypeptide features unique structural differences. AP7-1 possesses an extended beta-strand or polyproline type II-like structure within the A11-M10, S12-V13, and S28-I27 sequence regions, with the remaining sequence regions adopting a random-coil-like structure, a trait common to other polyelectrolyte mineral-associated polypeptide sequences. Conversely, AP24-1 possesses random coil-like structure within A1-S9 and Q14-N16 sequence regions, and evidence for turn-like, bend, or loop conformation within the G10-N13, Q17-N24, and M29-F30 sequence regions, similar to the structures identified within the putative elastomeric proteins Lustrin A and sea urchin spicule matrix proteins. The similarities and differences in AP7 and AP24 N-terminal domain structure are discussed with regard to joint AP7-AP24 protein modification of calcium carbonate growth.
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Affiliation(s)
- Brandon A Wustman
- Laboratory for Chemical Physics, New York University, 345 E. 24th Street, New York, NY 10010, USA
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Arias JL, Neira-Carrillo A, Arias JI, Escobar C, Bodero M, David M, Fernández MS. Sulfated polymers in biological mineralization: a plausible source for bio-inspired engineering. ACTA ACUST UNITED AC 2004. [DOI: 10.1039/b401396d] [Citation(s) in RCA: 63] [Impact Index Per Article: 3.2] [Reference Citation Analysis] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Indexed: 11/21/2022]
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