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Jin ZY, Fatima H, Zhang Y, Shao Z, Chen XJ. Recent Advances in Bio‐Compatible Oxygen Singlet Generation and Its Tumor Treatment. ADVANCED THERAPEUTICS 2021. [DOI: 10.1002/adtp.202100176] [Citation(s) in RCA: 4] [Impact Index Per Article: 1.3] [Reference Citation Analysis] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Indexed: 12/14/2022]
Affiliation(s)
- Zheng Yang Jin
- The First Affiliated Hospital of Wenzhou Medical University Wenzhou Zhejiang 325015 P. R. China
| | - Hira Fatima
- Western Australia School of Mines: Minerals Energy and Chemical Engineering (WASM‐MECE) Curtin University Perth Western Australia 6102 Australia
| | - Yue Zhang
- The First Affiliated Hospital of Wenzhou Medical University Wenzhou Zhejiang 325015 P. R. China
| | - Zongping Shao
- Western Australia School of Mines: Minerals Energy and Chemical Engineering (WASM‐MECE) Curtin University Perth Western Australia 6102 Australia
- State Key Laboratory of Materials‐Oriented Chemical Engineering College of Chemical Engineering Nanjing Tech University Nanjing Jiangsu 211816 P. R. China
| | - Xiang Jian Chen
- The First Affiliated Hospital of Wenzhou Medical University Wenzhou Zhejiang 325015 P. R. China
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Torrent-Sucarrat M, Arrastia I, Arrieta A, Cossío FP. Stereoselectivity, Different Oxidation States, and Multiple Spin States in the Cyclopropanation of Olefins Catalyzed by Fe–Porphyrin Complexes. ACS Catal 2018. [DOI: 10.1021/acscatal.8b01492] [Citation(s) in RCA: 25] [Impact Index Per Article: 4.2] [Reference Citation Analysis] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Indexed: 01/07/2023]
Affiliation(s)
- Miquel Torrent-Sucarrat
- Department of Organic Chemistry I, Universidad del País Vasco/Euskal Herriko Unibertsitatea (UPV/EHU), Centro de Innovación en Química Avanzada (ORFEO−CINQA), Manuel Lardizabal Ibilbidea 3, 20018 San Sebastián/Donostia, Spain
- Donostia International Physics Center (DIPC), Manuel Lardizabal Ibilbidea 4, 20018 San Sebastián/Donostia, Spain
- Ikerbasque, Basque Foundation for Science, Alameda Urquijo, 36-5 Plaza Bizkaia, 48011 Bilbao, Spain
| | - Iosune Arrastia
- Department of Organic Chemistry I, Universidad del País Vasco/Euskal Herriko Unibertsitatea (UPV/EHU), Centro de Innovación en Química Avanzada (ORFEO−CINQA), Manuel Lardizabal Ibilbidea 3, 20018 San Sebastián/Donostia, Spain
- Donostia International Physics Center (DIPC), Manuel Lardizabal Ibilbidea 4, 20018 San Sebastián/Donostia, Spain
| | - Ana Arrieta
- Department of Organic Chemistry I, Universidad del País Vasco/Euskal Herriko Unibertsitatea (UPV/EHU), Centro de Innovación en Química Avanzada (ORFEO−CINQA), Manuel Lardizabal Ibilbidea 3, 20018 San Sebastián/Donostia, Spain
| | - Fernando P. Cossío
- Department of Organic Chemistry I, Universidad del País Vasco/Euskal Herriko Unibertsitatea (UPV/EHU), Centro de Innovación en Química Avanzada (ORFEO−CINQA), Manuel Lardizabal Ibilbidea 3, 20018 San Sebastián/Donostia, Spain
- Donostia International Physics Center (DIPC), Manuel Lardizabal Ibilbidea 4, 20018 San Sebastián/Donostia, Spain
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Duan JX, Zhou Y, Xie ZZ, Sun TL, Cao J. Incorporating spin–orbit effects into surface hopping dynamics using the diagonal representation: a linear-response time-dependent density functional theory implementation with applications to 2-thiouracil. Phys Chem Chem Phys 2018; 20:15445-15454. [DOI: 10.1039/c8cp01852a] [Citation(s) in RCA: 7] [Impact Index Per Article: 1.2] [Reference Citation Analysis] [Abstract] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Indexed: 12/24/2022]
Abstract
Evaluation of SOC values employs Casida's wave functions and the Breit–Pauli spin–orbit Hamiltonian with effective charge approximation.
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Affiliation(s)
- Jun-Xin Duan
- State Key Laboratory of Advanced Technology for Materials Synthesis and Processing
- Wuhan University of Technology
- Wuhan
- P. R. China
| | - Yun Zhou
- Guizhou Provincial Key Laboratory of Computational Nano-material Science
- Guizhou Synergetic Innovation Center of Scientific Big Data for Advanced Manufacturing Technology
- Guizhou Normal College
- Guiyang
- China
| | - Zhi-Zhong Xie
- Department of Chemistry
- School of Chemistry
- Chemical Engineering and Life Sciences
- Wuhan University of Technology
- Wuhan 430070
| | - Tao-Lei Sun
- State Key Laboratory of Advanced Technology for Materials Synthesis and Processing
- Wuhan University of Technology
- Wuhan
- P. R. China
| | - Jun Cao
- Guizhou Provincial Key Laboratory of Computational Nano-material Science
- Guizhou Synergetic Innovation Center of Scientific Big Data for Advanced Manufacturing Technology
- Guizhou Normal College
- Guiyang
- China
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Gao X, Bai S, Fazzi D, Niehaus T, Barbatti M, Thiel W. Evaluation of Spin-Orbit Couplings with Linear-Response Time-Dependent Density Functional Methods. J Chem Theory Comput 2017; 13:515-524. [DOI: 10.1021/acs.jctc.6b00915] [Citation(s) in RCA: 171] [Impact Index Per Article: 24.4] [Reference Citation Analysis] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Indexed: 02/08/2023]
Affiliation(s)
- Xing Gao
- Max-Planck-Institut für Kohlenforschung, Kaiser-Wilhelm-Platz, D-45470, Mülheim an der Ruhr, Germany
| | - Shuming Bai
- Aix Marseille Univ, CNRS, ICR, Marseille, France
| | - Daniele Fazzi
- Max-Planck-Institut für Kohlenforschung, Kaiser-Wilhelm-Platz, D-45470, Mülheim an der Ruhr, Germany
| | - Thomas Niehaus
- Univ Lyon, Université Claude Bernard Lyon 1, CNRS, Institut Lumière Matière, F-69622, Villeurbanne, France
| | | | - Walter Thiel
- Max-Planck-Institut für Kohlenforschung, Kaiser-Wilhelm-Platz, D-45470, Mülheim an der Ruhr, Germany
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Alberro N, Torrent-Sucarrat M, Arrastia I, Arrieta A, Cossío FP. Two-State Reactivity of Histone Demethylases Containing Jumonji-C Active Sites: Different Mechanisms for Different Methylation Degrees. Chemistry 2016; 23:137-148. [DOI: 10.1002/chem.201604219] [Citation(s) in RCA: 10] [Impact Index Per Article: 1.3] [Reference Citation Analysis] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Received: 09/06/2016] [Indexed: 01/08/2023]
Affiliation(s)
- Nerea Alberro
- Department of Organic Chemistry I; Universidad del País Vasco/Euskal Herriko Unibertsitatea (UPV/EHU); Centro de Innovación en Química Avanzada (ORFEO-CINQA); Manuel Lardizabal Ibilbidea 3 20018 San Sebastián/Donostia Spain
| | - Miquel Torrent-Sucarrat
- Department of Organic Chemistry I; Universidad del País Vasco/Euskal Herriko Unibertsitatea (UPV/EHU); Centro de Innovación en Química Avanzada (ORFEO-CINQA); Manuel Lardizabal Ibilbidea 3 20018 San Sebastián/Donostia Spain
- Donostia International Physics Center (DIPC); Manuel Lardizabal Ibilbidea 4 20018 San Sebastián/Donostia Spain
- Ikerbasque; Basque Foundation for Science; María Díaz de Haro 3, 6 floor 48013 Bilbao Spain
| | - Iosune Arrastia
- Donostia International Physics Center (DIPC); Manuel Lardizabal Ibilbidea 4 20018 San Sebastián/Donostia Spain
| | - Ana Arrieta
- Department of Organic Chemistry I; Universidad del País Vasco/Euskal Herriko Unibertsitatea (UPV/EHU); Centro de Innovación en Química Avanzada (ORFEO-CINQA); Manuel Lardizabal Ibilbidea 3 20018 San Sebastián/Donostia Spain
| | - Fernando P. Cossío
- Department of Organic Chemistry I; Universidad del País Vasco/Euskal Herriko Unibertsitatea (UPV/EHU); Centro de Innovación en Química Avanzada (ORFEO-CINQA); Manuel Lardizabal Ibilbidea 3 20018 San Sebastián/Donostia Spain
- Donostia International Physics Center (DIPC); Manuel Lardizabal Ibilbidea 4 20018 San Sebastián/Donostia Spain
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Abstract
Tautomerization in porphycenes, constitutional isomers of porphyrins, is strongly entangled with spectral and photophysical parameters. The intramolecular double hydrogen transfer occurring in the ground and electronically excited states leads to uncommon spectroscopic characteristics, such as depolarized emission, viscosity-dependent radiationless depopulation, and vibrational-mode-specific tunneling splittings. This review starts with documentation of the electronic spectra of porphycenes: Absorption and magnetic circular dichroism are discussed, together with their analysis based on the perimeter model. Next, photophysical characteristics are presented, setting the stage for the final part, which discusses the developments in research on tautomerism. Porphycenes have been studied in different experimental regimes: molecules in condensed phases, isolated in supersonic jets and helium nanodroplets, and, recently also on the level of single molecules investigated by optical and scanning probe microscopies. Because of the rich and detailed information obtained from these diverse investigations, porphycenes emerge as very good models for studying the complex, multidimensional phenomena involved in the process of intramolecular double hydrogen transfer.
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Affiliation(s)
- Jacek Waluk
- Institute of Physical Chemistry, Polish Academy of Sciences , 01-224 Warsaw, Kasprzaka 44/52, Poland.,Faculty of Mathematics and Science, Cardinal Stefan Wyszyński University , Dewajtis 5, 01-815 Warsaw, Poland
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Mazzone G, Alberto ME, De Simone BC, Marino T, Russo N. Can Expanded Bacteriochlorins Act as Photosensitizers in Photodynamic Therapy? Good News from Density Functional Theory Computations. Molecules 2016; 21:288. [PMID: 26938516 PMCID: PMC6273748 DOI: 10.3390/molecules21030288] [Citation(s) in RCA: 29] [Impact Index Per Article: 3.6] [Reference Citation Analysis] [Abstract] [Key Words] [MESH Headings] [Track Full Text] [Download PDF] [Figures] [Journal Information] [Subscribe] [Scholar Register] [Received: 01/30/2016] [Revised: 02/19/2016] [Accepted: 02/24/2016] [Indexed: 01/10/2023] Open
Abstract
The main photophysical properties of a series of expanded bacteriochlorins, recently synthetized, have been investigated by means of DFT and TD-DFT methods. Absorption spectra computed with different exchange-correlation functionals, B3LYP, M06 and ωB97XD, have been compared with the experimental ones. In good agreement, all the considered systems show a maximum absorption wavelength that falls in the therapeutic window (600-800 nm). The obtained singlet-triplet energy gaps are large enough to ensure the production of cytotoxic singlet molecular oxygen. The computed spin-orbit matrix elements suggest a good probability of intersystem spin-crossing between singlet and triplet excited states, since they result to be higher than those computed for 5,10,15,20-tetrakis-(m-hydroxyphenyl)chlorin (Foscan©) already used in the photodynamic therapy (PDT) protocol. Because of the investigated properties, these expanded bacteriochlorins can be proposed as PDT agents.
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Affiliation(s)
- Gloria Mazzone
- Dipartimento di Chimica e Tecnologie Chimiche, Università della Calabria, I-87036 Arcavacata di Rende, Italy.
| | - Marta E Alberto
- Chimie ParisTech, CNRS, Institut de Recherche de Chimie Paris (IRCP), PSL Research University, F-75005 Paris, France.
| | - Bruna C De Simone
- Dipartimento di Chimica e Tecnologie Chimiche, Università della Calabria, I-87036 Arcavacata di Rende, Italy.
| | - Tiziana Marino
- Dipartimento di Chimica e Tecnologie Chimiche, Università della Calabria, I-87036 Arcavacata di Rende, Italy.
| | - Nino Russo
- Dipartimento di Chimica e Tecnologie Chimiche, Università della Calabria, I-87036 Arcavacata di Rende, Italy.
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Yang P, Qi D, You G, Shen W, Li M, He R. Influence of Duschinsky and Herzberg-Teller effects on S0 → S1 vibrationally resolved absorption spectra of several porphyrin-like compounds. J Chem Phys 2014; 141:124304. [DOI: 10.1063/1.4895958] [Citation(s) in RCA: 15] [Impact Index Per Article: 1.5] [Reference Citation Analysis] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Indexed: 12/20/2022] Open
Affiliation(s)
- Pan Yang
- College of Chemistry and Chemical Engineering, Southwest University, Chongqing 400715, China
| | - Dan Qi
- College of Chemistry and Chemical Engineering, Southwest University, Chongqing 400715, China
| | - Guojian You
- College of Chemistry and Chemical Engineering, Southwest University, Chongqing 400715, China
| | - Wei Shen
- College of Chemistry and Chemical Engineering, Southwest University, Chongqing 400715, China
| | - Ming Li
- College of Chemistry and Chemical Engineering, Southwest University, Chongqing 400715, China
| | - Rongxing He
- College of Chemistry and Chemical Engineering, Southwest University, Chongqing 400715, China
- Education Ministry Key Laboratory on Luminescence and Real-Time Analysis, Southwest University, Chongqing 400715, China
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Alberto ME, Mazzone G, Quartarolo AD, Sousa FFR, Sicilia E, Russo N. Electronic spectra and intersystem spin-orbit coupling in 1,2- and 1,3-squaraines. J Comput Chem 2014; 35:2107-13. [DOI: 10.1002/jcc.23725] [Citation(s) in RCA: 29] [Impact Index Per Article: 2.9] [Reference Citation Analysis] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Received: 07/23/2014] [Revised: 08/03/2014] [Accepted: 08/06/2014] [Indexed: 01/24/2023]
Affiliation(s)
- Marta E. Alberto
- Dipartimento di ingegneria Informatica, Modellistica, Elettronica e Sistemistica; Università della Calabria; I-87036 Arcavacata di Rende Italy
- Dipartimento di Chimica e Tecnologie Chimiche; Università della Calabria; I-87036 Arcavacata di Rende Italy
| | - Gloria Mazzone
- Dipartimento di ingegneria Informatica, Modellistica, Elettronica e Sistemistica; Università della Calabria; I-87036 Arcavacata di Rende Italy
- Dipartimento di Chimica e Tecnologie Chimiche; Università della Calabria; I-87036 Arcavacata di Rende Italy
| | - Angelo D. Quartarolo
- Dipartimento di Chimica e Tecnologie Chimiche; Università della Calabria; I-87036 Arcavacata di Rende Italy
| | - Flavio Fortes Ramos Sousa
- Dipartimento di Chimica e Tecnologie Chimiche; Università della Calabria; I-87036 Arcavacata di Rende Italy
| | - Emilia Sicilia
- Dipartimento di Chimica e Tecnologie Chimiche; Università della Calabria; I-87036 Arcavacata di Rende Italy
| | - Nino Russo
- Dipartimento di Chimica e Tecnologie Chimiche; Università della Calabria; I-87036 Arcavacata di Rende Italy
- Division de Ciencias Basicas e Ingenieria, Departamento de Quimica; Universidad, Autonoma Metropolitana-Iztapalapa; Av. San Rafael Atlixco No. 186, Col. Vicentina CP 09340 Mexico Distrito Federal Mexico
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Alberto ME, De Simone BC, Mazzone G, Quartarolo AD, Russo N. Theoretical Determination of Electronic Spectra and Intersystem Spin–Orbit Coupling: The Case of Isoindole-BODIPY Dyes. J Chem Theory Comput 2014; 10:4006-13. [DOI: 10.1021/ct500426h] [Citation(s) in RCA: 48] [Impact Index Per Article: 4.8] [Reference Citation Analysis] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Indexed: 11/29/2022]
Affiliation(s)
- Marta E. Alberto
- Dipartimento di Chimica e
Tecnologie Chimiche, Università della Calabria, I-87036 Arcavacata di Rende, Italy
| | - Bruna C. De Simone
- Dipartimento di Chimica e
Tecnologie Chimiche, Università della Calabria, I-87036 Arcavacata di Rende, Italy
| | - Gloria Mazzone
- Dipartimento di Chimica e
Tecnologie Chimiche, Università della Calabria, I-87036 Arcavacata di Rende, Italy
| | - Angelo D. Quartarolo
- Dipartimento di Chimica e
Tecnologie Chimiche, Università della Calabria, I-87036 Arcavacata di Rende, Italy
| | - Nino Russo
- Dipartimento di Chimica e
Tecnologie Chimiche, Università della Calabria, I-87036 Arcavacata di Rende, Italy
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Drujon J, Rahmani R, Héran V, Blanc R, Carissan Y, Tuccio B, Commeiras L, Parrain JL. trans-1,2-Disiloxybenzocyclobutene, an adequate partner for the auto-oxidation: EPR/spin trapping and theoretical studies. Phys Chem Chem Phys 2014; 16:7513-20. [DOI: 10.1039/c3cp55077j] [Citation(s) in RCA: 8] [Impact Index Per Article: 0.8] [Reference Citation Analysis] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Indexed: 01/01/2023]
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Lim CK, Heo J, Shin S, Jeong K, Seo YH, Jang WD, Park CR, Park SY, Kim S, Kwon IC. Nanophotosensitizers toward advanced photodynamic therapy of Cancer. Cancer Lett 2013; 334:176-87. [DOI: 10.1016/j.canlet.2012.09.012] [Citation(s) in RCA: 216] [Impact Index Per Article: 19.6] [Reference Citation Analysis] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Received: 06/29/2012] [Revised: 09/14/2012] [Accepted: 09/15/2012] [Indexed: 02/07/2023]
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Lan Z, Nonell S, Barbatti M. Theoretical Characterization of Absorption and Emission Spectra of an Asymmetric Porphycene. J Phys Chem A 2012; 116:3366-76. [DOI: 10.1021/jp300888a] [Citation(s) in RCA: 7] [Impact Index Per Article: 0.6] [Reference Citation Analysis] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Indexed: 12/22/2022]
Affiliation(s)
- Zhenggang Lan
- Qingdao Institute of Bioenergy
and Bioprocess Technology, Chinese Academy of Sciences, Qingdao, 266101, People’s Republic of China
| | - Santi Nonell
- Grup d’Enginyeria Molecular,
Institut Quimic de Sarria, Universitat Ramon Llull, Via Augusta 390, E-08017, Barcelona, Spain
| | - Mario Barbatti
- Max-Planck-Institut für Kohlenforschung, Kaiser-Wilhelm-Platz 1,
D-45470 Mülheim, Germany
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Quartarolo AD, Chiodo SG, Russo N. A TDDFT investigation of bay substituted perylenediimides: Absorption and intersystem crossing. J Comput Chem 2012; 33:1091-100. [DOI: 10.1002/jcc.22914] [Citation(s) in RCA: 22] [Impact Index Per Article: 1.8] [Reference Citation Analysis] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Received: 10/12/2011] [Revised: 11/30/2011] [Accepted: 11/30/2011] [Indexed: 01/24/2023]
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Alberto ME, Marino T, Russo N, Sicilia E, Toscano M. The performance of density functional based methods in the description of selected biological systems and processes. Phys Chem Chem Phys 2012; 14:14943-53. [DOI: 10.1039/c2cp41836c] [Citation(s) in RCA: 30] [Impact Index Per Article: 2.5] [Reference Citation Analysis] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Indexed: 11/21/2022]
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Yang Y. Effects induced by axial ligands binding to tetrapyrrole-based aromatic metallomacrocycles. J Phys Chem A 2011; 115:9043-54. [PMID: 21755961 DOI: 10.1021/jp204531e] [Citation(s) in RCA: 17] [Impact Index Per Article: 1.3] [Reference Citation Analysis] [Abstract] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Indexed: 11/28/2022]
Abstract
The axial positions of planar metallomacrocycles are unoccupied. The positively charged metal is thus a potential binding site for electron-donating groups. The binding strength is affected by the central metal, the ligand, and the macrocycle. One ligand leads to the out-of-plane displacement of the central metal, whereas two ligands from two sides structurally neutralize each other. The axial ligand donates charge to the central metal and the macrocycle when the lone pair orients along the interaction axis. The frontier orbital levels are elevated because of the charge donated to the macrocycle. Even though the singlet-triplet gap and the absorption maximum do not change significantly upon binding, the redox chemistry is considerably affected by the shifts of orbital levels. The macrocyclic M-N bonds are weakened by the binding, but their natures remain almost unchanged. Calcium phthalocyanine is a special case, as the central calcium is too large to fit the cavity. Accordingly, multiple ligands facilely bind to the calcium from one side. The aluminum phthalocyanine halogen is another special case, as it has a halogen ligand coordinating to the aluminum through a nondative bond. This leads to some effects different from those caused by dative binding. When there is no considerable steric demand, the lone pair points along the interaction axis to facilitate the donation. When in a stacked dimer, the electron-rich group is part of a large molecule, and the orientation of the lone pair is approximately perpendicular to the interaction axis. This induces the charge loss of the central metal. Because metallomacrocycles are widespread in the biological, medical, and material sciences, the results from this study are expected to bring useful insights to these fields.
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Affiliation(s)
- Yang Yang
- Department of Chemistry, Case Western Reserve University, Cleveland, Ohio 44106, USA.
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