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For: Dułak M, Kamiński JW, Wesołowski TA. Equilibrium Geometries of Noncovalently Bound Intermolecular Complexes Derived from Subsystem Formulation of Density Functional Theory. J Chem Theory Comput 2015;3:735-45. [PMID: 26627391 DOI: 10.1021/ct600367t] [Citation(s) in RCA: 44] [Impact Index Per Article: 4.9] [Reference Citation Analysis] [What about the content of this article? (0)] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Indexed: 11/28/2022]
Number Cited by Other Article(s)
1
Csóka J, Hégely B, Nagy PR, Kállay M. Development of analytic gradients for the Huzinaga quantum embedding method and its applications to large-scale hybrid and double hybrid DFT forces. J Chem Phys 2024;160:124113. [PMID: 38530010 DOI: 10.1063/5.0194463] [Citation(s) in RCA: 0] [Impact Index Per Article: 0] [Reference Citation Analysis] [Abstract] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Received: 12/27/2023] [Accepted: 03/06/2024] [Indexed: 03/27/2024]  Open
2
Teale AM, Helgaker T, Savin A, Adamo C, Aradi B, Arbuznikov AV, Ayers PW, Baerends EJ, Barone V, Calaminici P, Cancès E, Carter EA, Chattaraj PK, Chermette H, Ciofini I, Crawford TD, De Proft F, Dobson JF, Draxl C, Frauenheim T, Fromager E, Fuentealba P, Gagliardi L, Galli G, Gao J, Geerlings P, Gidopoulos N, Gill PMW, Gori-Giorgi P, Görling A, Gould T, Grimme S, Gritsenko O, Jensen HJA, Johnson ER, Jones RO, Kaupp M, Köster AM, Kronik L, Krylov AI, Kvaal S, Laestadius A, Levy M, Lewin M, Liu S, Loos PF, Maitra NT, Neese F, Perdew JP, Pernal K, Pernot P, Piecuch P, Rebolini E, Reining L, Romaniello P, Ruzsinszky A, Salahub DR, Scheffler M, Schwerdtfeger P, Staroverov VN, Sun J, Tellgren E, Tozer DJ, Trickey SB, Ullrich CA, Vela A, Vignale G, Wesolowski TA, Xu X, Yang W. DFT exchange: sharing perspectives on the workhorse of quantum chemistry and materials science. Phys Chem Chem Phys 2022;24:28700-28781. [PMID: 36269074 PMCID: PMC9728646 DOI: 10.1039/d2cp02827a] [Citation(s) in RCA: 62] [Impact Index Per Article: 31.0] [Reference Citation Analysis] [Abstract] [MESH Headings] [Grants] [Track Full Text] [Figures] [Journal Information] [Subscribe] [Scholar Register] [Received: 06/22/2022] [Accepted: 08/09/2022] [Indexed: 12/13/2022]
3
Polak E, González-Espinoza CE, Gander MJ, Wesolowski TA. A non-decomposable approximation on the complete density function space for the non-additive kinetic potential. J Chem Phys 2022;156:044103. [DOI: 10.1063/5.0076871] [Citation(s) in RCA: 1] [Impact Index Per Article: 0.5] [Reference Citation Analysis] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Indexed: 12/29/2022]  Open
4
Lee SJR, Ding F, Manby FR, Miller TF. Analytical gradients for projection-based wavefunction-in-DFT embedding. J Chem Phys 2019. [DOI: 10.1063/1.5109882] [Citation(s) in RCA: 9] [Impact Index Per Article: 1.8] [Reference Citation Analysis] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Indexed: 12/26/2022]  Open
5
Zech A, Dreuw A, Wesolowski TA. Extension of frozen-density embedding theory for non-variational embedded wavefunctions. J Chem Phys 2019;150:121101. [DOI: 10.1063/1.5089233] [Citation(s) in RCA: 5] [Impact Index Per Article: 1.0] [Reference Citation Analysis] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Indexed: 11/15/2022]  Open
6
Klahr K, Schlüns D, Neugebauer J. Geometry Optimizations in a Subsystem Density Functional Theory Formalism: A Benchmark Study. J Chem Theory Comput 2018;14:5631-5644. [DOI: 10.1021/acs.jctc.8b00475] [Citation(s) in RCA: 5] [Impact Index Per Article: 0.8] [Reference Citation Analysis] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Indexed: 11/30/2022]
7
Heuser J, Höfener S. Analytical Nuclear Excited-State Gradients for the Second-Order Approximate Coupled-Cluster Singles and Doubles (CC2) Method Employing Uncoupled Frozen-Density Embedding. J Chem Theory Comput 2018;14:4616-4628. [PMID: 30086227 DOI: 10.1021/acs.jctc.8b00369] [Citation(s) in RCA: 3] [Impact Index Per Article: 0.5] [Reference Citation Analysis] [Abstract] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Indexed: 12/18/2022]
8
Ricardi N, Zech A, Gimbal-Zofka Y, Wesolowski TA. Explicit vs. implicit electronic polarisation of environment of an embedded chromophore in frozen-density embedding theory. Phys Chem Chem Phys 2018;20:26053-26062. [DOI: 10.1039/c8cp05634j] [Citation(s) in RCA: 9] [Impact Index Per Article: 1.5] [Reference Citation Analysis] [Abstract] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Indexed: 11/21/2022]
9
Heuser J, Höfener S. Analytical nuclear excited-state gradients for the Tamm-Dancoff approximation using uncoupled frozen-density embedding. J Comput Chem 2017;38:2316-2325. [PMID: 28766728 DOI: 10.1002/jcc.24885] [Citation(s) in RCA: 8] [Impact Index Per Article: 1.1] [Reference Citation Analysis] [Abstract] [Key Words] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Received: 03/02/2017] [Revised: 06/24/2017] [Accepted: 06/27/2017] [Indexed: 11/11/2022]
10
Tamukong PK, Khait YG, Hoffmann MR. Accurate Dissociation of Chemical Bonds Using DFT-in-DFT Embedding Theory with External Orbital Orthogonality. J Phys Chem A 2016;121:256-264. [DOI: 10.1021/acs.jpca.6b09909] [Citation(s) in RCA: 16] [Impact Index Per Article: 2.0] [Reference Citation Analysis] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Indexed: 11/28/2022]
11
Schlüns D, Franchini M, Götz AW, Neugebauer J, Jacob CR, Visscher L. Analytical gradients for subsystem density functional theory within the slater-function-based amsterdam density functional program. J Comput Chem 2016;38:238-249. [DOI: 10.1002/jcc.24670] [Citation(s) in RCA: 7] [Impact Index Per Article: 0.9] [Reference Citation Analysis] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Received: 08/15/2016] [Revised: 10/14/2016] [Accepted: 10/19/2016] [Indexed: 11/09/2022]
12
Genova A, Ceresoli D, Pavanello M. Avoiding fractional electrons in subsystem DFT based ab-initio molecular dynamics yields accurate models for liquid water and solvated OH radical. J Chem Phys 2016;144:234105. [DOI: 10.1063/1.4953363] [Citation(s) in RCA: 22] [Impact Index Per Article: 2.8] [Reference Citation Analysis] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Indexed: 11/14/2022]  Open
13
Heuser J, Höfener S. Wave-function frozen-density embedding: Approximate analytical nuclear ground-state gradients. J Comput Chem 2016;37:1092-101. [DOI: 10.1002/jcc.24301] [Citation(s) in RCA: 12] [Impact Index Per Article: 1.5] [Reference Citation Analysis] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Received: 09/03/2015] [Revised: 12/15/2015] [Accepted: 12/17/2015] [Indexed: 01/31/2023]
14
Kovyrshin A, Neugebauer J. Analytical gradients for excitation energies from frozen-density embedding. Phys Chem Chem Phys 2016;18:20955-75. [DOI: 10.1039/c6cp00392c] [Citation(s) in RCA: 12] [Impact Index Per Article: 1.5] [Reference Citation Analysis] [Abstract] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Indexed: 11/21/2022]
15
Wesolowski TA, Shedge S, Zhou X. Frozen-Density Embedding Strategy for Multilevel Simulations of Electronic Structure. Chem Rev 2015;115:5891-928. [DOI: 10.1021/cr500502v] [Citation(s) in RCA: 219] [Impact Index Per Article: 24.3] [Reference Citation Analysis] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Indexed: 12/18/2022]
16
Śmiga S, Fabiano E, Laricchia S, Constantin LA, Della Sala F. Subsystem density functional theory with meta-generalized gradient approximation exchange-correlation functionals. J Chem Phys 2015;142:154121. [DOI: 10.1063/1.4917257] [Citation(s) in RCA: 22] [Impact Index Per Article: 2.4] [Reference Citation Analysis] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Indexed: 11/14/2022]  Open
17
Schlüns D, Klahr K, Mück-Lichtenfeld C, Visscher L, Neugebauer J. Subsystem-DFT potential-energy curves for weakly interacting systems. Phys Chem Chem Phys 2015;17:14323-41. [DOI: 10.1039/c4cp04936e] [Citation(s) in RCA: 31] [Impact Index Per Article: 3.4] [Reference Citation Analysis] [Abstract] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Indexed: 11/21/2022]
18
Fabiano E, Laricchia S, Della Sala F. Frozen density embedding with non-integer subsystems' particle numbers. J Chem Phys 2014;140:114101. [PMID: 24655166 DOI: 10.1063/1.4868033] [Citation(s) in RCA: 15] [Impact Index Per Article: 1.5] [Reference Citation Analysis] [Abstract] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Indexed: 11/14/2022]  Open
19
Jacob CR, Neugebauer J. Subsystem density-functional theory. WILEY INTERDISCIPLINARY REVIEWS-COMPUTATIONAL MOLECULAR SCIENCE 2014. [DOI: 10.1002/wcms.1175] [Citation(s) in RCA: 229] [Impact Index Per Article: 22.9] [Reference Citation Analysis] [Track Full Text] [Subscribe] [Scholar Register] [Indexed: 12/24/2022]
20
Tamukong PK, Khait YG, Hoffmann MR. Density Differences in Embedding Theory with External Orbital Orthogonality. J Phys Chem A 2014;118:9182-200. [DOI: 10.1021/jp5062495] [Citation(s) in RCA: 29] [Impact Index Per Article: 2.9] [Reference Citation Analysis] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Indexed: 11/28/2022]
21
Götz AW, Autschbach J, Visscher L. Calculation of nuclear spin-spin coupling constants using frozen density embedding. J Chem Phys 2014;140:104107. [DOI: 10.1063/1.4864053] [Citation(s) in RCA: 10] [Impact Index Per Article: 1.0] [Reference Citation Analysis] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Indexed: 11/14/2022]  Open
22
Cisneros GA, Karttunen M, Ren P, Sagui C. Classical electrostatics for biomolecular simulations. Chem Rev 2014;114:779-814. [PMID: 23981057 PMCID: PMC3947274 DOI: 10.1021/cr300461d] [Citation(s) in RCA: 192] [Impact Index Per Article: 19.2] [Reference Citation Analysis] [MESH Headings] [Grants] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Indexed: 12/12/2022]
23
Beyhan SM, Götz AW, Visscher L. Bond energy decomposition analysis for subsystem density functional theory. J Chem Phys 2013;138:094113. [DOI: 10.1063/1.4793629] [Citation(s) in RCA: 14] [Impact Index Per Article: 1.3] [Reference Citation Analysis] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Indexed: 11/15/2022]  Open
24
Laricchia S, Fabiano E, Della Sala F. On the accuracy of frozen density embedding calculations with hybrid and orbital-dependent functionals for non-bonded interaction energies. J Chem Phys 2012;137:014102. [PMID: 22779632 DOI: 10.1063/1.4730748] [Citation(s) in RCA: 19] [Impact Index Per Article: 1.6] [Reference Citation Analysis] [Abstract] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Indexed: 11/14/2022]  Open
25
Gurusamy P, Muthukumar K, Rajesh S, Muneeswaran G, Perumal S, Karunakaran C. Theoretical investigation of quinone metabolites of dopamine interaction with DNA – Insights into toxicological effects. J Struct Biol 2012;180:125-31. [DOI: 10.1016/j.jsb.2012.05.008] [Citation(s) in RCA: 3] [Impact Index Per Article: 0.3] [Reference Citation Analysis] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Received: 02/24/2012] [Revised: 05/11/2012] [Accepted: 05/16/2012] [Indexed: 10/28/2022]
26
de Silva P, Wesolowski TA. Exact non-additive kinetic potentials in realistic chemical systems. J Chem Phys 2012;137:094110. [DOI: 10.1063/1.4749573] [Citation(s) in RCA: 24] [Impact Index Per Article: 2.0] [Reference Citation Analysis] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Indexed: 11/14/2022]  Open
27
Wang Y, Sosa CP, Cembran A, Truhlar DG, Gao J. Multilevel X-Pol: a fragment-based method with mixed quantum mechanical representations of different fragments. J Phys Chem B 2012;116:6781-8. [PMID: 22428657 DOI: 10.1021/jp212399g] [Citation(s) in RCA: 29] [Impact Index Per Article: 2.4] [Reference Citation Analysis] [Abstract] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Indexed: 11/28/2022]
28
On the Orthogonality of Orbitals in Subsystem Kohn–Sham Density Functional Theory. ACTA ACUST UNITED AC 2012. [DOI: 10.1016/b978-0-444-59440-2.00003-x] [Citation(s) in RCA: 3] [Impact Index Per Article: 0.3] [Reference Citation Analysis] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register]
29
Li JH, Chai JD, Guo GY, Hayashi M. Significant role of the DNA backbone in mediating the transition origin of electronic excitations of B-DNA – implication from long range corrected TDDFT and quantified NTO analysis. Phys Chem Chem Phys 2012;14:9092-103. [DOI: 10.1039/c2cp23676a] [Citation(s) in RCA: 6] [Impact Index Per Article: 0.5] [Reference Citation Analysis] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Indexed: 11/21/2022]
30
Aquilante F, Wesołowski TA. Self-consistency in frozen-density embedding theory based calculations. J Chem Phys 2011;135:084120. [DOI: 10.1063/1.3624888] [Citation(s) in RCA: 22] [Impact Index Per Article: 1.7] [Reference Citation Analysis] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Indexed: 11/14/2022]  Open
31
Fradelos G, Wesołowski TA. Importance of the Intermolecular Pauli Repulsion in Embedding Calculations for Molecular Properties: The Case of Excitation Energies for a Chromophore in Hydrogen-Bonded Environments. J Phys Chem A 2011;115:10018-26. [DOI: 10.1021/jp203192g] [Citation(s) in RCA: 30] [Impact Index Per Article: 2.3] [Reference Citation Analysis] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Indexed: 11/28/2022]
32
Fradelos G, Lutz JJ, Wesołowski TA, Piecuch P, Włoch M. Embedding vs Supermolecular Strategies in Evaluating the Hydrogen-Bonding-Induced Shifts of Excitation Energies. J Chem Theory Comput 2011. [DOI: 10.1021/ct200101x] [Citation(s) in RCA: 54] [Impact Index Per Article: 4.2] [Reference Citation Analysis] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Indexed: 11/28/2022]
33
Goodpaster JD, Barnes TA, Miller TF. Embedded density functional theory for covalently bonded and strongly interacting subsystems. J Chem Phys 2011;134:164108. [DOI: 10.1063/1.3582913] [Citation(s) in RCA: 82] [Impact Index Per Article: 6.3] [Reference Citation Analysis] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Indexed: 11/14/2022]  Open
34
Mo Y, Bao P, Gao J. Energy decomposition analysis based on a block-localized wavefunction and multistate density functional theory. Phys Chem Chem Phys 2011;13:6760-75. [PMID: 21369567 PMCID: PMC3719994 DOI: 10.1039/c0cp02206c] [Citation(s) in RCA: 182] [Impact Index Per Article: 14.0] [Reference Citation Analysis] [Abstract] [MESH Headings] [Grants] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Indexed: 11/21/2022]
35
Zhou X, Kaminski JW, Wesolowski TA. Multi-scale modelling of solvatochromic shifts from frozen-density embedding theory with non-uniform continuum model of the solvent: the coumarin 153 case. Phys Chem Chem Phys 2011;13:10565-76. [DOI: 10.1039/c0cp02874f] [Citation(s) in RCA: 27] [Impact Index Per Article: 2.1] [Reference Citation Analysis] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Indexed: 11/21/2022]
36
Fux S, Reiher M. Electron Density in Quantum Theory. ELECTRON DENSITY AND CHEMICAL BONDING II 2011. [DOI: 10.1007/430_2010_37] [Citation(s) in RCA: 10] [Impact Index Per Article: 0.8] [Reference Citation Analysis] [Track Full Text] [Subscribe] [Scholar Register] [Indexed: 12/13/2022]
37
Fradelos G, Wesolowski TA. The Importance of Going beyond Coulombic Potential in Embedding Calculations for Molecular Properties: The Case of Iso-G for Biliverdin in Protein-Like Environment. J Chem Theory Comput 2010;7:213-22. [DOI: 10.1021/ct100415h] [Citation(s) in RCA: 21] [Impact Index Per Article: 1.5] [Reference Citation Analysis] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Indexed: 11/28/2022]
38
Laricchia S, Fabiano E, Della Sala F. Frozen density embedding with hybrid functionals. J Chem Phys 2010;133:164111. [DOI: 10.1063/1.3494537] [Citation(s) in RCA: 44] [Impact Index Per Article: 3.1] [Reference Citation Analysis] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Indexed: 11/14/2022]  Open
39
Beyhan SM, Götz AW, Jacob CR, Visscher L. The weak covalent bond in NgAuF (Ng=Ar, Kr, Xe): A challenge for subsystem density functional theory. J Chem Phys 2010;132:044114. [DOI: 10.1063/1.3297886] [Citation(s) in RCA: 40] [Impact Index Per Article: 2.9] [Reference Citation Analysis] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Indexed: 11/14/2022]  Open
40
Götz AW, Beyhan SM, Visscher L. Performance of Kinetic Energy Functionals for Interaction Energies in a Subsystem Formulation of Density Functional Theory. J Chem Theory Comput 2009;5:3161-74. [DOI: 10.1021/ct9001784] [Citation(s) in RCA: 101] [Impact Index Per Article: 6.7] [Reference Citation Analysis] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Indexed: 11/28/2022]
41
Cembran A, Song L, Mo Y, Gao J. Block-Localized Density Functional Theory (BLDFT), Diabatic Coupling, and Their Use in Valence Bond Theory for Representing Reactive Potential Energy Surfaces. J Chem Theory Comput 2009;5:2702-2716. [PMID: 20228960 PMCID: PMC2836602 DOI: 10.1021/ct9002898] [Citation(s) in RCA: 98] [Impact Index Per Article: 6.5] [Reference Citation Analysis] [Abstract] [Grants] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Indexed: 12/26/2022]
42
Fradelos G, Kaminski JW, Wesolowski TA, Leutwyler S. Cooperative Effect of Hydrogen-Bonded Chains in the Environment of a π → π* Chromophore. J Phys Chem A 2009;113:9766-71. [DOI: 10.1021/jp906483z] [Citation(s) in RCA: 17] [Impact Index Per Article: 1.1] [Reference Citation Analysis] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Indexed: 11/28/2022]
43
Jacob CR, Neugebauer J, Visscher L. A flexible implementation of frozen-density embedding for use in multilevel simulations. J Comput Chem 2008;29:1011-8. [DOI: 10.1002/jcc.20861] [Citation(s) in RCA: 126] [Impact Index Per Article: 7.9] [Reference Citation Analysis] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Indexed: 11/11/2022]
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