• Reference Citation Analysis
  • v
  • v
  • Find an Article
Find an Article PDF (4657933)   Today's Articles (1010)   Subscriber (51259)
For: Gil A, Simon S, Rodríguez-Santiago L, Bertrán J, Sodupe M. Influence of the Side Chain in the Structure and Fragmentation of Amino Acids Radical Cations. J Chem Theory Comput 2015;3:2210-20. [PMID: 26636213 DOI: 10.1021/ct700055p] [Citation(s) in RCA: 41] [Impact Index Per Article: 4.6] [Reference Citation Analysis] [What about the content of this article? (0)] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Indexed: 11/29/2022]
Number Cited by Other Article(s)
1
Moppel I, Elliott B, Chen S. Intermolecular hydrogen bonding behavior of amino acid radical cations. Org Biomol Chem 2024;22:3966-3978. [PMID: 38690804 DOI: 10.1039/d4ob00301b] [Citation(s) in RCA: 0] [Impact Index Per Article: 0] [Reference Citation Analysis] [Abstract] [MESH Headings] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Indexed: 05/03/2024]
2
Sánchez‐González Á, Grenut P, Gil A. Influence of conventional hydrogen bonds in the intercalation of phenanthroline derivatives with DNA: The important role of the sugar and phosphate backbone. J Comput Chem 2022;43:804-821. [PMID: 35297513 PMCID: PMC9313584 DOI: 10.1002/jcc.26836] [Citation(s) in RCA: 3] [Impact Index Per Article: 1.5] [Reference Citation Analysis] [Abstract] [Key Words] [MESH Headings] [Grants] [Track Full Text] [Download PDF] [Figures] [Journal Information] [Subscribe] [Scholar Register] [Received: 01/18/2022] [Accepted: 02/28/2022] [Indexed: 12/14/2022]
3
Ortiz de Luzuriaga I, Elleuchi S, Jarraya K, Artacho E, Lopez X, Gil A. Semi-empirical and Linear-Scaling DFT Methods to Characterize duplex DNA and G-quadruplexes in Presence of Interacting Small Molecules. Phys Chem Chem Phys 2022;24:11510-11519. [DOI: 10.1039/d2cp00214k] [Citation(s) in RCA: 2] [Impact Index Per Article: 1.0] [Reference Citation Analysis] [Abstract] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Indexed: 11/21/2022]
4
Sánchez-González Á, Bandeira NAG, Ortiz de Luzuriaga I, Martins FF, Elleuchi S, Jarraya K, Lanuza J, Lopez X, Calhorda MJ, Gil A. New Insights on the Interaction of Phenanthroline Based Ligands and Metal Complexes and Polyoxometalates with Duplex DNA and G-Quadruplexes. Molecules 2021;26:4737. [PMID: 34443326 PMCID: PMC8397986 DOI: 10.3390/molecules26164737] [Citation(s) in RCA: 15] [Impact Index Per Article: 5.0] [Reference Citation Analysis] [Abstract] [Key Words] [MESH Headings] [Grants] [Track Full Text] [Download PDF] [Figures] [Journal Information] [Subscribe] [Scholar Register] [Received: 06/30/2021] [Revised: 07/28/2021] [Accepted: 07/29/2021] [Indexed: 12/24/2022]  Open
5
Meißner R, Feketeová L, Bayer A, Postler J, Limão‐Vieira P, Denifl S. Positive and negative ions of the amino acid histidine formed in low-energy electron collisions. JOURNAL OF MASS SPECTROMETRY : JMS 2019;54:802-816. [PMID: 31410948 PMCID: PMC6916310 DOI: 10.1002/jms.4427] [Citation(s) in RCA: 11] [Impact Index Per Article: 2.2] [Reference Citation Analysis] [Abstract] [Key Words] [MESH Headings] [Grants] [Track Full Text] [Subscribe] [Scholar Register] [Received: 05/10/2019] [Revised: 07/29/2019] [Accepted: 08/05/2019] [Indexed: 05/28/2023]
6
Guo M, Wu H, Zhang H, Luo Z. Furthering the Diverse Hydrogen Atom Transfer and Carbon Bond Dissociation of Amino Acids under Vacuum Ultraviolet. ChemistrySelect 2019. [DOI: 10.1002/slct.201803564] [Citation(s) in RCA: 1] [Impact Index Per Article: 0.2] [Reference Citation Analysis] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Indexed: 11/06/2022]
7
Kempkes LJM, Martens J, Berden G, Oomens J. w-Type ions formed by electron transfer dissociation of Cys-containing peptides investigated by infrared ion spectroscopy. JOURNAL OF MASS SPECTROMETRY : JMS 2018;53:1207-1213. [PMID: 30281881 PMCID: PMC6283004 DOI: 10.1002/jms.4298] [Citation(s) in RCA: 3] [Impact Index Per Article: 0.5] [Reference Citation Analysis] [Abstract] [Key Words] [MESH Headings] [Track Full Text] [Figures] [Subscribe] [Scholar Register] [Received: 07/21/2018] [Revised: 08/24/2018] [Accepted: 09/26/2018] [Indexed: 06/08/2023]
8
Castrovilli MC, Trabattoni A, Bolognesi P, O'Keeffe P, Avaldi L, Nisoli M, Calegari F, Cireasa R. Ultrafast Hydrogen Migration in Photoionized Glycine. J Phys Chem Lett 2018;9:6012-6016. [PMID: 30253105 DOI: 10.1021/acs.jpclett.8b02089] [Citation(s) in RCA: 10] [Impact Index Per Article: 1.7] [Reference Citation Analysis] [Abstract] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Indexed: 06/08/2023]
9
Ma L, Ren J, Feng R, Zhang K, Kong X. Structural characterizations of protonated homodimers of amino acids: Revealed by infrared multiple photon dissociation (IRMPD) spectroscopy and theoretical calculations. CHINESE CHEM LETT 2018. [DOI: 10.1016/j.cclet.2018.02.008] [Citation(s) in RCA: 7] [Impact Index Per Article: 1.2] [Reference Citation Analysis] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Indexed: 10/18/2022]
10
Xin Y, Rodríguez-Santiago L, Sodupe M, Álvarez-Larena A, Busqué F, Alibés R. Intramolecular Photocycloaddition of 2(5 H)-Furanones to Temporarily Tethered Terminal Alkenes as a Stereoselective Source of Enantiomerically Pure Polyfunctionalyzed Cyclobutanes. J Org Chem 2018;83:3188-3199. [PMID: 29461058 DOI: 10.1021/acs.joc.8b00088] [Citation(s) in RCA: 2] [Impact Index Per Article: 0.3] [Reference Citation Analysis] [Abstract] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Indexed: 12/19/2022]
11
Giricheva NI, Kurbatova MS, Tyunina EY, Badelin VG. Quantum chemical study of the molecular structure of the sodium dodecylsulfate complexes with glycine and cysteine. J STRUCT CHEM+ 2018. [DOI: 10.1134/s0022476617080182] [Citation(s) in RCA: 3] [Impact Index Per Article: 0.5] [Reference Citation Analysis] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Indexed: 11/23/2022]
12
Meneses G, Widmann C, Cunha T, Gil A, Ferreira da Silva F, Calhorda MJ, Limão-Vieira P. Unravelling the dissociation pathways of acetic acid upon electron transfer in potassium collisions: experimental and theoretical studies. Phys Chem Chem Phys 2018;19:1083-1088. [PMID: 27942639 DOI: 10.1039/c6cp06375f] [Citation(s) in RCA: 4] [Impact Index Per Article: 0.7] [Reference Citation Analysis] [Abstract] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Indexed: 11/21/2022]
13
Piekarski DG, Delaunay R, Mika A, Maclot S, Adoui L, Martín F, Alcamí M, Huber BA, Rousseau P, Díaz-Tendero S, Domaracka A. Production of doubly-charged highly reactive species from the long-chain amino acid GABA initiated by Ar9+ionization. Phys Chem Chem Phys 2017;19:19609-19618. [DOI: 10.1039/c7cp00903h] [Citation(s) in RCA: 13] [Impact Index Per Article: 1.9] [Reference Citation Analysis] [Abstract] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Indexed: 12/18/2022]
14
Piekarski DG, Díaz-Tendero S. Structure and stability of clusters of β-alanine in the gas phase: importance of the nature of intermolecular interactions. Phys Chem Chem Phys 2017;19:5465-5476. [DOI: 10.1039/c6cp07792g] [Citation(s) in RCA: 5] [Impact Index Per Article: 0.7] [Reference Citation Analysis] [Abstract] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Indexed: 11/21/2022]
15
Ha DT, Yamazaki K, Wang Y, Alcamí M, Maeda S, Kono H, Martín F, Kukk E. Fragmentation network of doubly charged methionine: Interpretation using graph theory. J Chem Phys 2016;145:094302. [DOI: 10.1063/1.4962061] [Citation(s) in RCA: 2] [Impact Index Per Article: 0.3] [Reference Citation Analysis] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Indexed: 11/14/2022]  Open
16
Kocisek J, Piekarski DG, Delaunay R, Huber BA, Adoui L, Martín F, Alcamí M, Rousseau P, Domaracka A, Kopyra J, Díaz-Tendero S. N-Acetylglycine Cation Tautomerization Enabled by the Peptide Bond. J Phys Chem A 2015;119:9581-9. [PMID: 26243533 DOI: 10.1021/acs.jpca.5b06009] [Citation(s) in RCA: 5] [Impact Index Per Article: 0.6] [Reference Citation Analysis] [Abstract] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Indexed: 11/28/2022]
17
Kleisath E, Marta RA, Martens S, Martens J, McMahon T. Structures and Energetics of Protonated Clusters of Methylamine with Phenylalanine Analogs, Characterized by Infrared Multiple Photon Dissociation Spectroscopy and Electronic Structure Calculations. J Phys Chem A 2015;119:6689-702. [DOI: 10.1021/acs.jpca.5b02794] [Citation(s) in RCA: 3] [Impact Index Per Article: 0.3] [Reference Citation Analysis] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Indexed: 11/28/2022]
18
Darvish Ganji M, Hosseini-khah SM, Amini-tabar Z. Theoretical insight into hydrogen adsorption onto graphene: a first-principles B3LYP-D3 study. Phys Chem Chem Phys 2015;17:2504-11. [DOI: 10.1039/c4cp04399e] [Citation(s) in RCA: 84] [Impact Index Per Article: 9.3] [Reference Citation Analysis] [Abstract] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Indexed: 01/09/2023]
19
Piekarski DG, Delaunay R, Maclot S, Adoui L, Martín F, Alcamí M, Huber BA, Rousseau P, Domaracka A, Díaz-Tendero S. Unusual hydroxyl migration in the fragmentation of β-alanine dication in the gas phase. Phys Chem Chem Phys 2015;17:16767-78. [DOI: 10.1039/c5cp01628b] [Citation(s) in RCA: 23] [Impact Index Per Article: 2.6] [Reference Citation Analysis] [Abstract] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Indexed: 12/16/2022]
20
Laksman J, Kooser K, Levola H, Itälä E, Ha DT, Rachlew E, Kukk E. Dissociation pathways in the cysteine dication after site-selective core ionization. J Phys Chem B 2014;118:11688-95. [PMID: 25233490 DOI: 10.1021/jp508161s] [Citation(s) in RCA: 10] [Impact Index Per Article: 1.0] [Reference Citation Analysis] [Abstract] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Indexed: 01/06/2023]
21
Ha DT, Wang Y, Alcamí M, Itälä E, Kooser K, Urpelainen S, Huels MA, Kukk E, Martín F. Fragmentation dynamics of doubly charged methionine in the gas phase. J Phys Chem A 2014;118:1374-83. [PMID: 24517120 DOI: 10.1021/jp4113238] [Citation(s) in RCA: 22] [Impact Index Per Article: 2.2] [Reference Citation Analysis] [Abstract] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Indexed: 01/20/2023]
22
Pauwels E, De Cooman H, Waroquier M, Hole EO, Sagstuen E. Solved? The reductive radiation chemistry of alanine. Phys Chem Chem Phys 2014;16:2475-82. [DOI: 10.1039/c3cp54441a] [Citation(s) in RCA: 13] [Impact Index Per Article: 1.3] [Reference Citation Analysis] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Indexed: 11/21/2022]
23
Capron M, Díaz-Tendero S, Maclot S, Domaracka A, Lattouf E, Ławicki A, Maisonny R, Chesnel JY, Méry A, Poully JC, Rangama J, Adoui L, Martín F, Alcamí M, Rousseau P, Huber BA. A Multicoincidence Study of Fragmentation Dynamics in Collision of γ-Aminobutyric Acid with Low-Energy Ions. Chemistry 2012;18:9321-32. [DOI: 10.1002/chem.201103922] [Citation(s) in RCA: 41] [Impact Index Per Article: 3.4] [Reference Citation Analysis] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Received: 12/14/2011] [Revised: 03/27/2012] [Indexed: 11/07/2022]
24
Wu R, Marta RA, Martens JK, Eldridge KR, McMahon TB. Experimental and theoretical investigation of the proton-bound dimer of lysine. JOURNAL OF THE AMERICAN SOCIETY FOR MASS SPECTROMETRY 2011;22:1651-9. [PMID: 21953268 DOI: 10.1007/s13361-011-0178-9] [Citation(s) in RCA: 30] [Impact Index Per Article: 2.3] [Reference Citation Analysis] [Abstract] [MESH Headings] [Track Full Text] [Subscribe] [Scholar Register] [Received: 12/18/2010] [Revised: 05/21/2011] [Accepted: 05/21/2011] [Indexed: 05/23/2023]
25
Maclot S, Capron M, Maisonny R, Ławicki A, Méry A, Rangama J, Chesnel JY, Bari S, Hoekstra R, Schlathölter T, Manil B, Adoui L, Rousseau P, Huber BA. Ion-Induced Fragmentation of Amino Acids: Effect of the Environment. Chemphyschem 2011;12:930-6. [DOI: 10.1002/cphc.201000823] [Citation(s) in RCA: 43] [Impact Index Per Article: 3.3] [Reference Citation Analysis] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Received: 10/04/2010] [Indexed: 11/06/2022]
26
Lam AKY, Hutton CA, O'Hair RAJ. Role of 2-oxo and 2-thioxo modifications on the fragmentation reactions of the histidine radical cation. RAPID COMMUNICATIONS IN MASS SPECTROMETRY : RCM 2011;25:251-261. [PMID: 21192020 DOI: 10.1002/rcm.4830] [Citation(s) in RCA: 0] [Impact Index Per Article: 0] [Reference Citation Analysis] [Abstract] [MESH Headings] [Track Full Text] [Subscribe] [Scholar Register] [Indexed: 05/30/2023]
27
Zhao J, Siu KWM, Hopkinson AC. Glutathione radical cation in the gas phase; generation, structure and fragmentation. Org Biomol Chem 2011;9:7384-92. [DOI: 10.1039/c1ob05968h] [Citation(s) in RCA: 14] [Impact Index Per Article: 1.1] [Reference Citation Analysis] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Indexed: 12/26/2022]
28
Warren JJ, Tronic TA, Mayer JM. Thermochemistry of proton-coupled electron transfer reagents and its implications. Chem Rev 2010;110:6961-7001. [PMID: 20925411 PMCID: PMC3006073 DOI: 10.1021/cr100085k] [Citation(s) in RCA: 1223] [Impact Index Per Article: 87.4] [Reference Citation Analysis] [MESH Headings] [Grants] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Indexed: 12/16/2022]
29
Cucarull-González JR, Hernando J, Alibés R, Figueredo M, Font J, Rodríguez-Santiago L, Sodupe M. [2 + 2] Photocycloaddition of 2(5H)-Furanone to Unsaturated Compounds. Insights from First Principles Calculations and Transient-Absorption Measurements. J Org Chem 2010;75:4392-401. [DOI: 10.1021/jo100341a] [Citation(s) in RCA: 17] [Impact Index Per Article: 1.2] [Reference Citation Analysis] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Indexed: 11/28/2022]
30
Sinha RK, Maître P, Piccirillo S, Chiavarino B, Crestoni ME, Fornarini S. Cysteine radical cation: A distonic structure probed by gas phase IR spectroscopy. Phys Chem Chem Phys 2010;12:9794-800. [DOI: 10.1039/c003576a] [Citation(s) in RCA: 52] [Impact Index Per Article: 3.7] [Reference Citation Analysis] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Indexed: 01/06/2023]
31
Marta RA, Wu R, Eldridge KR, Martens JK, McMahon TB. Infrared vibrational spectra as a structural probe of gaseous ions formed by caffeine and theophylline. Phys Chem Chem Phys 2010;12:3431-42. [DOI: 10.1039/b921102k] [Citation(s) in RCA: 21] [Impact Index Per Article: 1.5] [Reference Citation Analysis] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Indexed: 11/21/2022]
32
Gil A, Sodupe M, Bertran J. Influence of ionization on the conformational preferences of peptide models. Ramachandran surfaces of N-formyl-glycine amide and N-formyl-alanine amide radical cations. J Comput Chem 2009;30:1771-84. [PMID: 19090571 DOI: 10.1002/jcc.21178] [Citation(s) in RCA: 8] [Impact Index Per Article: 0.5] [Reference Citation Analysis] [Abstract] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Indexed: 11/07/2022]
33
Ryzhov V, Lam AKY, O'Hair RAJ. Gas-phase fragmentation of long-lived cysteine radical cations formed via NO loss from protonated S-nitrosocysteine. JOURNAL OF THE AMERICAN SOCIETY FOR MASS SPECTROMETRY 2009;20:985-995. [PMID: 19217308 DOI: 10.1016/j.jasms.2008.12.026] [Citation(s) in RCA: 40] [Impact Index Per Article: 2.7] [Reference Citation Analysis] [Abstract] [MESH Headings] [Track Full Text] [Subscribe] [Scholar Register] [Received: 11/18/2008] [Revised: 12/17/2008] [Accepted: 12/17/2008] [Indexed: 05/27/2023]
34
Blancafort L, Duran M, Poater J, Salvador P, Simon S, Solà M, Voityuk AA. Excess charge delocalization in organic and biological molecules: some theoretical notions. Theor Chem Acc 2009. [DOI: 10.1007/s00214-009-0538-8] [Citation(s) in RCA: 7] [Impact Index Per Article: 0.5] [Reference Citation Analysis] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Indexed: 10/21/2022]
35
Wu R, McMahon TB. IRMPD spectra of Gly.NH4 + and proton-bound betaine dimer: evidence for the smallest gas phase zwitterionic structures. JOURNAL OF MASS SPECTROMETRY : JMS 2008;43:1641-1648. [PMID: 18613000 DOI: 10.1002/jms.1449] [Citation(s) in RCA: 16] [Impact Index Per Article: 1.0] [Reference Citation Analysis] [Abstract] [MESH Headings] [Track Full Text] [Subscribe] [Scholar Register] [Indexed: 05/26/2023]
36
Morozova OB, Yurkovskaya AV. Aminium Cation Radical of Glycylglycine and its Deprotonation to Aminyl Radical in Aqueous Solution. J Phys Chem B 2008;112:12859-62. [DOI: 10.1021/jp807149a] [Citation(s) in RCA: 17] [Impact Index Per Article: 1.1] [Reference Citation Analysis] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Indexed: 01/18/2023]
37
How the site of ionisation influences side-chain fragmentation in histidine radical cation. Chem Phys Lett 2008. [DOI: 10.1016/j.cplett.2007.11.098] [Citation(s) in RCA: 14] [Impact Index Per Article: 0.9] [Reference Citation Analysis] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Indexed: 11/22/2022]
PrevPage 1 of 1 1Next
© 2004-2024 Baishideng Publishing Group Inc. All rights reserved. 7041 Koll Center Parkway, Suite 160, Pleasanton, CA 94566, USA