Anammox bacterial abundance, biodiversity and activity in a constructed wetland

Enrichment and characterization of thermophilic anaerobic ammonium oxidizing bacteria from hot spring

Anaerobic ammonium oxidization (Anammox) process plays a crucial role in the global nitrogen cycle and sustainable biological nitrogen removal from wastewater. Although Anammox bacteria have been detected across mesophilic and thermophilic conditions, the direct cultivation of Anammox bacteria from thermal environments has remained elusive. This impedes limiting our understanding of their physiology and ecology in high-temperature habitats. Here, we successfully enriched Anammox bacteria from hot spring sediments at 45 °C, achieving an ammonium oxidation rate of 158.0 mg NH4+-N l-1d-1, with the genus 'Candidatus Brocadia' presenting 22.9 % of the total microbial community after about 500 days of operation. Metagenomic analysis recovered two high-quality genomes of novel Anammox bacteria, which we designed as 'Candidatus Brocadia thermophilus' and 'Candidatus Brocadia thermoanammoxidans'. Both of them encoded and actively expressed key metabolic genes involved in Anammox process and several genes associated with thermotolerance, demonstrating their remarkable ability to perform Anammox reaction in thermophilic environments. Notably, phylotypes related to 'Candidatus Brocadia thermoanammoxidans' have frequently been retrieved from geographically distinct natural habitats. These findings expand our understanding of thermophilic Anammox bacteria and underscore their potential in the nitrogen cycle of thermal natural and engineering ecosystems.

Factors Influencing Gaseous Emissions in Constructed Wetlands: A Meta-Analysis and Systematic Review

Constructed wetlands (CWs) are an eco-technology for wastewater treatment and are applied worldwide. Due to the regular influx of pollutants, CWs can release considerable quantities of greenhouse gases (GHGs), ammonia (NH₃), and other atmospheric pollutants, such as volatile organic compounds (VOCs) and hydrogen sulfide (H₂S), etc., which will aggravate global warming, degrade air quality and even threaten human health. However, there is a lack of systematic understanding of factors affecting the emission of these gases in CWs. In this study, we applied meta-analysis to quantitatively review the main influencing factors of GHG emission from CWs; meanwhile, the emissions of NH₃, VOCs, and H₂S were qualitatively assessed. Meta-analysis indicates that horizontal subsurface flow (HSSF) CWs emit less CH₄ and N₂O than free water surface flow (FWS) CWs. The addition of biochar can mitigate N₂O emission compared to gravel-based CWs but has the risk of increasing CH₄ emission. Polyculture CWs stimulate CH₄ emission but pose no influence on N₂O emission compared to monoculture CWs. The influent wastewater characteristics (e.g., C/N ratio, salinity) and environmental conditions (e.g., temperature) can also impact GHG emission. The NH₃ volatilization from CWs is positively related to the influent nitrogen concentration and pH value. High plant species richness tends to reduce NH₃ volatilization and plant composition showed greater effects than species richness. Though VOCs and H₂S emissions from CWs do not always occur, it should be a concern when using CWs to treat wastewater containing hydrocarbon and acid. This study provides solid references for simultaneously achieving pollutant removal and reducing gaseous emission from CWs, which avoids the transformation of water pollution into air contamination.

The combination sequence effect on nitrogen removal pathway in hybrid constructed wetlands treating raw sewage from multiple perspectives

The combination sequence of traditional hybrid constructed wetlands (HCWs) affects the removal of nitrogen in raw sewage, but the effect of the combination sequence on nitrogen removal pathway have seldom been reported, especially the specific conditions allowing anammox to occur. Three-stage HCWs, namely vertical flow (VF), horizontal flow (HF) and surface flow (SF) constructed wetlands, were arranged in six different sequences to investigate nitrogen removal efficiencies and microbial removal pathways using metagenomic and stable isotope analyses. Results showed that the combination sequence significantly affected nitrogen removal pathways in HCWs. We found the best removal of total nitrogen (~50%) and ammonium (NH₄⁺-N, ~99%) in HCWs with a VFCW in the 1st stage. Metagenomic results and stable isotope analyses further indicated that simultaneous nitrification and heterotrophic denitrification were the main pathways in unsaturated VFCW, which depended on the energy substance and electron donor supplied by chemical oxygen demand (COD_Cr) in raw sewage. Nitrifier, anammox bacteria and autotrophic denitrifies prevailed in the subsequent saturated CWs, which tend to nitrogen loss by partial nitrification and anammox in HFCW when fed with NH₄⁺-N wastewater with low COD_Cr. Providing NH₄⁺-N and oxygen in low COD_Cr wastewater was the essential step to facilitate anammox process in HFCW. It implied that the problem of poor nitrogen removal due to carbon limitation could be overcome by optimizing conditions in anammox's favor.

Towards a more labor-saving way in microbial ammonium oxidation: A review on complete ammonia oxidization (comammox)

In the Anthropocene, nitrogen pollution is becoming an increasing challenge for both mankind and the Earth system. Microbial nitrogen cycling begins with aerobic nitrification, which is also the key rate-limiting step. For over a century, it has been accepted that nitrification occurs sequentially involving ammonia oxidation, which produces nitrite followed by nitrite oxidation, generating nitrate. This perception was changed by the discovery of comammox Nitrospira bacteria and their metabolic pathway. In addition, this also provided us with new knowledge concerning the complex nitrogen cycle network. In the comammox process, ammonia can be completely oxidized to nitrate in one cell via the subsequent activity of the enzyme complexes, ammonia monooxygenase, hydroxylamine dehydrogenase, and nitrite oxidodreductase. Over the past five years, research on comammox made great progress. However, there still exist a lot of questions, including how much does comammox contribute to nitrification? How large is the diversity and are there new strains to be discovered? Do comammox bacteria produce the greenhouse gas N₂O, and how or to which extent may they contribute to global climate change? The above four aspects are of great significance on the farmland nitrogen management, aquatic environment restoration, and mitigation of global climate change. As large number of comammox bacteria and pathways have been detected in various terrestrial and aquatic ecosystems, indicating that the comammox process may exert an important role in the global nitrogen cycle.

Removal of microcystin (MC-LR) in constructed wetlands integrated with microbial fuel cells: Efficiency, bioelectricity generation and microbial response

Microcystins (MCs) pollution caused by cyanobacteria harmful blooms (CHBs) has posed short- and long-term risks to aquatic ecosystems and public health. Constructed wetlands (CWs) have been verified as an effective technology for eutrophication but the removal performance for MCs did not achieve an acceptable level. CWs integrated with microbial fuel cell (MFC-CWs) were developed to intensify the nutrient and Microcystin-LR (MC-LR) removal efficiencies in this study. The results indicated that closed-circuit MFC-CWs (T1) exhibited a better NO₃^--N, NH₄⁺-N, TP and MC-LR removal efficiency compared to that of open-circuit MFC-CWs (CK, i.e., traditional CWs). Therein, a MC-LR removal efficiency of greater than 95% was observed in both trials in T1. The addition of sponge iron to the anode layer of MFC-CWs (T2) improved only the NO₃^--N removal and efficiency bioelectricity generation performance compared to T1, and the average effluent MC-LR concentration of T2 (1.14 μg/L) was still higher than the provisional limit concentration (1.0 μg/L). The microbial community diversity of T1 and T2 was simplified compared to CK. The relative abundance of Sphingomonadaceae possessing the degradation capability for MCs increased in T1, which contributed to the higher MC-LR removal efficiency compared to CK and T2. While the relative abundance of electrochemically active bacteria (EAB) (i.e., Desulfuromonadaceae and Desulfomicrobiaceae) in the anode of T2 was promoted by the addition of sponge iron. Overall, this study suggests that integrating MFC into CWs provides a feasible intensification strategy for eutrophication and MCs pollution control.

Physiology of anammox adaptation to low temperatures and promising biomarkers: A review

The adaptation of bacteria involved in the anaerobic ammonium oxidation (anammox) to low temperatures in the mainstream of WWTP will unlock substantial treatment savings. However, their adaptation mechanisms have begun to be revealed only very recently. This study reviewed the state-of-the-art knowledge on these mechanisms from -omics studies, crucially including metaproteomics and metabolomics. Anammox bacteria adapt to low temperatures by synthesizing both chaperones of RNA and proteins and chemical chaperones. Furthermore, they preserve energy for the core metabolism by reducing biosynthesis in general. Thus, in this study, a number of biomarkers are proposed to help practitioners assess the extent of anammox bacteria adaptation and predict the decomposition of biofilms/granules or slower growth. The promising biomarkers also include unique ladderane lipids. Further proteomic and metabolomic studies are necessary for a more detailed understanding of anammox low-temperature adaptation, thus easing the transition to more cost-effective and sustainable wastewater treatment.

Changes in Ammonia-Oxidizing Archaea and Bacterial Communities and Soil Nitrogen Dynamics in Response to Long-Term Nitrogen Fertilization

Ammonia oxidizing archaea (AOA) and bacteria (AOB) mediate a crucial step in nitrogen (N) metabolism. The effect of N fertilizer rates on AOA and AOB communities is less studied in the wheat-fallow system from semi-arid areas. Based on a 17-year wheat field experiment, we explored the effect of five N fertilizer rates (0, 52.5, 105, 157.5, and 210 kg ha^-1 yr^-1) on the AOA and AOB community composition. This study showed that the grain yield of wheat reached the maximum at 105 kg N ha^-1 (49% higher than control), and no further significant increase was observed at higher N rates. With the increase of N, AOA abundance decreased in a regular trend from 4.88 × 10⁷ to 1.05 × 10⁷ copies g^-1 dry soil, while AOB abundance increased from 3.63 × 10⁷ up to a maximum of 8.24 × 10⁷ copies g^-1 dry soil with the N105 treatment (105 kg N ha^-1 yr^-1). Application rates of N fertilizer had a more significant impact on the AOB diversity than on AOA diversity, and the highest AOB diversity was found under the N105 treatment in this weak alkaline soil. The predominant phyla of AOA and AOB were Thaumarchaeota and Proteobacteria, respectively, and higher N treatment (N210) resulted in a significant decrease in the relative abundance of genus Nitrosospira. In addition, AOA and AOB communities were significantly associated with grain yield of wheat, soil potential nitrification activity (PNA), and some soil physicochemical parameters such as pH, NH₄-N, and NO₃-N. Among them, soil moisture was the most influential edaphic factor for structuring the AOA community and NH₄-N for the AOB community. Overall, 105 kg N ha^-1 yr^-1 was optimum for the AOB community and wheat yield in the semi-arid area.

Hydrological Characteristics and Trophic Status as Dominant Drivers of Rotifer Community Composition in Artificially Created Riverine Wetlands

Simple Summary

Increased public awareness of wetlands and the importance of their conservation stipulated various preservation or improvement projects. In 2012, riverine wetlands were created in the Nakdong River in Korea to replace those damaged or destroyed by the River Refurbishment Project, but they could not be maintained as functional wetlands, owing to the long-term neglect and lack of management. A previous survey detected various problems in these wetlands, including insufficient in/outflow function, shore instability, and difficulty in introducing appropriate water sources, which cause nutrient accumulation and algal blooms. The in/outflow functions of the mainstream and tributaries were hampered by soil and plant deposition. These chemical changes influenced the community composition of rotifers. In particular, three rotifer species—Brachionus, Keratella, and Trichocerca—were mainly distributed in wetlands with relatively high nutrient concentrations (total nitrogen and phosphorus). Therefore, the rotifer community can be used as an indicator of the nutritional status of a wetland, and the functional state of the wetland can be understood through continuous monitoring of rotifers.

Abstract

Hydrological characteristics of freshwater ecosystems are powerful determinants of the distribution of biological communities and changes in environmental factors. This study identified relationships between the wetland environment, rotifer community, and hydrological factors for 48 wetlands, to determine their impact on wetland conservation and management. Different hydrological factors produced different wetland environments, which influenced the rotifer community composition. The wetlands with “poor” “in/outflow function” and “shore stability” levels showed high conductivity, turbidity, depth, and concentrations of total nitrogen, total phosphorus, and chlorophyll a. In contrast, the dissolved oxygen levels and velocity were the highest in wetlands with “good” in/outflow function and shore stability variables. The nutritional status of each wetland affected the composition of the rotifer community. Some genera (Keratella, Brachionus, Anuraeopsis, Trichocerca, and Philodina) were found in wetlands with high concentrations of total nitrogen, total phosphorus, and chlorophyll a, and high turbidity and depth. In contrast, Ascomorpha and Ploesoma were found in wetlands with high dissolved oxygen levels and flow velocity. High densities of Lepadella, Lecane, and Testudinella were found in wetlands completely covered by macrophytes. The rotifer community distribution can be used to understand the trophic, current functional, and environmental status of wetlands.

High removal efficiencies of antibiotics and low accumulation of antibiotic resistant genes obtained in microbial fuel cell-constructed wetlands intensified by sponge iron

Using microbial fuel cells with constructed wetlands (MFC-CWs) for eliminating antibiotics has recently attracted extensive attention. However, antibiotic removal efficiencies in MFC-CWs must be enhanced, and the accumulation of antibiotic resistant genes (ARGs) remains an unmanageable issue. This study tries to enhance the antibiotic removal in synthetic wastewater and reduce ARGs by adding sponge iron (s-Fe⁰) and calcium peroxide to the anode and cathode of MFC-CWs, respectively, and/or simultaneously. The results demonstrated that adding s-Fe⁰ and calcium peroxide to MFC-CWs could improve the removal efficiencies of sulfamethoxazole (SMX) and tetracycline (TC) by 0.8-1.3% and 6.0-8.7%. Therein, s-Fe⁰ also significantly reduced 84.10-94.11% and 49.61-60.63% of total sul and tet genes, respectively. Furthermore, s-Fe⁰ improved the voltage output, power density, columbic efficiency, and reduced the internal resistance of reactors. The intensification to the electrode layers posed a significant effect on the microbial community composition and functions, which motivated the shift of antibiotic removal, accumulation of ARGs and bioelectricity generation in MFC-CWs. Given the overall performance of MFC-CWs, adding s-Fe⁰ to the anode region of MFC-CWs was found to be an effective strategy for removing antibiotics and reducing the accumulation of ARGs.

Enhanced Nitrogen Removal from Domestic Wastewater by Partial-Denitrification/Anammox in an Anoxic/Oxic Biofilm Reactor

A partial-denitrification coupling with anaerobic ammonium oxidation (anammox) process (PD/A) in a continuous-flow anoxic/oxic (A/O) biofilm reactor was developed to treat carbon-limited domestic wastewater (ammonia (NH4+-N) of 55 mg/L and chemical oxygen demand (COD) of 148 mg/L in average) for about 200 days operation. Satisfactory NH4+-N oxidation efficiency above 95% was achieved with rapid biofilm formation in the aerobic zone. Notably, nitrite (NO2−-N) accumulation was observed in the anoxic zone, mainly due to the insufficient electron donor for complete nitrate (NO3−-N) reduction. The nitrate-to-nitrite transformation ratio (NTR) achieved was as high as 64.4%. After the inoculation of anammox-enriched sludge to anoxic zones, total nitrogen (TN) removal was significantly improved from 37.3% to 78.0%. Anammox bacteria were effectively retained in anoxic biofilm utilizing NO2−-N produced via the PD approach and NH4+-N in domestic wastewater, with the relative abundance of 5.83% for stable operation. Anammox pathway contributed to TN removal by a high level of 38%. Overall, this study provided a promising method for mainstream nitrogen removal with low energy consumption and organic carbon demand.

Diversity, abundance, and distribution of anammox bacteria in shipping channel sediment of Hong Kong by analysis of DNA and RNA

Anammox bacteria have been detected in various ecosystems, but their occurrence and community composition along the shipping channels have not been reported. In this study, anammox bacteria were recovered by PCR-amplified biomarker hzsB gene from the genomic DNA of the sediment samples. Phylogenetic tree revealed that Candidatus Scalindua and Ca. Brocadia dominated the anammox community of the Hong Kong channels; Ca. Scalindua spp. was present abundantly at the sites farther from the shore, whereas Ca. Jettenia and Ca. Kuenenia were detected as the minor members in the estuarine sediments near the shipping terminals. The highest values of Shannon-Wiener index and Chao1 were identified in the sediments along the Urmston road (UR), suggesting the highest α-diversity and species richness of anammox bacteria. PCoA analysis indicated that anammox bacterial communities along UR and Tai Hong (TH) channel were site-specific because these samples were grouped and clearly separated from the other samples. The maximum diversity of anammox bacteria was detected in UR samples, ranging from 6.28 × 10⁵ to 1.28 × 10⁶ gene copies per gram of dry sediment. A similar pattern of their transcriptional activities was also observed among these channels. Pearson's moment correlation and redundancy analysis indicated that NH₄⁺-N was a strong factor shaping the community structure, which showed significant positive correlation with the anammox bacterial abundance and anammox transcriptional activities (p < 0.01, r > 0.8). Also, NH₄⁺-N, (NO₃^- + NO₂^-)-N, and NH₄⁺/NO_X were additional key environmental factors that influenced the anammox community diversity and distribution. This study yields a better understanding of the ecological distribution of anammox bacteria and the dominant genera in selective niche.

Integration of CW-MFC and anaerobic granular sludge to explore the intensified ammonification-nitrification-denitrification processes for nitrogen removal

The integration of constructed wetland-microbial fuel cell (CW-MFC) and anaerobic granular sludge (AGS) is an important way to promote its ammonification efficiency and decrease the land use scale. This study explored the integration of CW-MFC and AGS for nitrogen removal via the intensified ammonification-nitrification-denitrification processes with initial NH₃-N, NO₃-N, Org-N and total nitrogen (TN) concentrations of 10.5, 13.8, 21.4, and 45.7 mg L^-1 in wastewater. Two reactors with AGS inoculated with a separated area (R1) and directly inoculated into gravel substrate (R2) were designed, respectively. Results showed that chemical oxygen demand (COD) removal efficiency could reach 85% in R1 and 81% in R2, and the conversion of Org-N to NH₃-N and NO₃-N to gaseous nitrogen were 80% and 90%, respectively. Although the conversion efficiency of NH₃-N to NO₂-N/NO₃-N via nitrification process was only 18%, it could reach 45%, 94%, and 98% with the aeration rates of 50-, 100-, and 200-mL min^-1. According to microstructural property and microbial community analyses, the separation gravel substrate and AGS areas in R1 availed for stable particle size of AGS, archaeal diversity, and metabolic activity even with a 1.5 times daily wastewater treatment capacity than that of R2. Overall, although the intensified ammonification-nitrification-denitrification processes for nitrogen removal could be achieved with supplementary aeration, further investigation is still needed to explore other substrate materials and high CW-MFC/AGS volume ratio for intensified nitrification process in CW-MFC associated with AGS.

Metabolic patterns reveal enhanced anammox activity at low nitrogen conditions in the integrated I-ABR

Substrate concentrations greatly influence bacterial growth and metabolism. However, optimal nitrogen concentrations for anammox bacteria in nitrogen-limited environments remain unclear. Here, we observed enhanced nitrogen metabolism and anabolism of anammox bacteria at low nitrogen conditions. Efficient nitrogen removal was achieved at ammonium and nitrite influent concentration of 30 mg/L under HRT of 1 hr, with an average nitrogen removal rate (NRR) of 0.73 kg N/(m³ ·day) in I-ABR composed of four compartments. The highest anammox activity of 6.25 mmol N/ (gVSS·hr) was observed in the fourth compartment (C4) with the lowest substrate levels (ammonium and nitrite of 11.6 mg/L and 7 mg/L). This could be resulted from the highest expression level of genes involved in nitrogen metabolism in C4, which was 1.49-1.67 times higher than that in other compartments. Besides, the second compartment (C2) exhibited the most active anabolism at ammonium and nitrite of 17 mg/L and 13 mg/L, respectively, which contributed to the most active amino acid synthesis and thus the highest EPS (1.35 times higher) in C2. This enhanced amino acid auxotrophy between anammox bacteria with heterotrophs, and consequently, heterotrophs thrived and competed for nitrite. These results hint at the potential application of anammox process in micro-polluted water. PRACTITIONER POINTS: High nitrogen removal and efficient biomass retention at low nitrogen concentrations under short HRT was achieved in I-ABR. Optimal concentrations for anammox nitrogen removal and anabolism were discussed under low nitrogen concentrations. More active anabolism contributed to enhanced amino acid synthesis and thus higher EPS contents. Low substrate levels led to enhanced expression of genes involved in nitrogen metabolism and thus high anammox activity.

Hot spots and hot moments of nitrogen removal from hyporheic and riparian zones: A review

The Earth is experiencing excessive nitrogen (N) input to its various ecosystems due to human activities. How to effectively and efficiently remove N from ecosystems has been, is and will be at the center of attention in N research. Hyporheic and riparian zones are widely acknowledged for their buffering capacity to reduce contaminants (especially N) transport downstream. However, these zones are usually misunderstood that they can remove N at all spots and at any moments. Here pathways of N removal from hyporheic and riparian zones are reviewed and summarized with an emphasize on their hot spots and hot moments. N is biogeochemically removed by denitrification, anammox, nitrifier denitrification, denitrifying anaerobic methane oxidation, Feammox and Sulfammox. Hot moments of N removal are mainly triggered by precipitation, fire and snowmelt. Finally, some research needs are outlined and discussed, such as developing approaches for multiscale sampling and monitoring, quantifying the effects of hot spots and hot moments at hyporheic and riparian zones and evaluating the impacts of human activities on hot spots and hot moments, to inspire more research on hot spots and hot moments of N removal. By this review, we hope to bring awareness of the heterogeneity of hyporheic and riparian zones to catchment managers and policy makers when tackling N pollution problems.

Nitrogen removal through collaborative microbial pathways in tidal flow constructed wetlands

Constructed wetlands are efficient in removing nitrogen from water; however, little is known about nitrogen-cycling pathways for nitrogen loss from tidal flow constructed wetlands. This study conducted molecular and stable isotopic analyses to investigate potential dissimilatory nitrate reduction to ammonium (DNRA), denitrification, nitrification, anaerobic ammonium oxidation (anammox), and their contributions to nitrogen removal by two tidal wetland mesocosms, PA (planted with Phragmites australis) and NP (unplanted), designated to treat Yangtze River Estuary water. Our results show the mesocosms removed ~22.6% of TN from nitrate-dominated river water (1.19 mg·L^-1), with better performance obtained in PA than that in NP, which was consistent with the molecular and stable isotopic data. The potential activities of DNRA, anammox, denitrification and nitrification varied between 0.6 and 1.6, 4.6-37.3, 36.4-305.7, and 463.7-945.9 nmol N₂ g^-1 dry soil d^-1, respectively, with higher values obtained in PA than NP. Nitrification accounted for 94.3-99.4% of NH₄⁺ oxidation, with the rest through anammox. Denitrification contributed to 77.9-90.3% of NO_x^- reduction, compared to 9.2-21.6% and 0.5-1.5% via anammox and DNRA, respectively; 78.4-90.9% of N₂ was produced through denitrification, with the rest via anammox. Pearson correlation analyses suggest NH₄⁺ was the major factor regulating nitrification, while NO₃^- played an important role in the competition between denitrification and DNRA, and NO₂^- was a key restrictive factor for anammox. Overall, this study reveals the importance of nitrification, denitrification, anammox and DNRA in nitrogen removal, providing new insight into the nitrogen-cycling mechanisms in natural/artificial tidal wetlands.

Fixed nitrogen removal mechanisms associated with sulfur cycling in tropical wetlands

Wetland ecosystems play an important role in nitrogen cycling, yet the role of anaerobic ammonium oxidation (anammox) in tropical wetlands remains unclear. In the current study the anammox process accounted for 29.8 ~ 57.3% of nitrogen loss in ex situ activity batch tests of microcosms established from anoxic sediments of different tropical wetlands, with the highest activity being 17.95±0.51 nmol-N/g dry sediment/h. This activity was most likely driven by sulfide oxidation with dissimilatory nitrate reduction to ammonium (sulfide-driven DNRA). Microbial community analyses revealed a variety of anammox bacteria related to several known lineages, including Candidatus Anammoximicrobium, Candidatus Brocadia and Candidatus Kuenenia, at different wetlands. Metagenome predictions, batch tests, and isotope-tracing suggested that the high level of anammox activity was due to sulfide-driven DNRA. This was corroborated by a strong correlation (through Pearson's analysis) between the abundance of anammox bacteria and the nrfA (a dissimilatory nitrate reduction to ammonium gene) and dsrA (a sulfate reductase gene) genes, as well as sulfate, ammonium and nitrate concentrations. These correlations suggest syntrophic interactions among sulfate-reducing, sulfide-driven DNRA, and anammox bacterial populations. A better understanding of the role of sulfur in nitrogen loss via the anammox reaction in natural systems could inform development of a viable wastewater treatment strategy that utilizes sulfate to minimize the activity of denitrifying bacteria and thus to reduce nitrous oxide emissions from wastewater treatment plants.

Dissimilatory Nitrate Reduction to Ammonium (DNRA) and Denitrification Pathways Are Leveraged by Cyclic AMP Receptor Protein (CRP) Paralogues Based on Electron Donor/Acceptor Limitation in Shewanella loihica PV-4

Under anoxic conditions, many bacteria, including Shewanella loihica strain PV-4, could use nitrate as an electron acceptor for dissimilatory nitrate reduction to ammonium (DNRA) and/or denitrification. Previous and current studies have shown that DNRA is favored under higher ambient carbon-to-nitrogen (C/N) ratios, whereas denitrification is upregulated under lower C/N ratios, which is consistent with our bioenergetics calculations. Interestingly, computational analyses indicate that the common cyclic AMP receptor protein (designated CRP1) and its paralogue CRP2 might both be involved in the regulation of two competing dissimilatory nitrate reduction pathways, DNRA and denitrification, in S. loihica PV-4 and several other denitrifying Shewanella species. To explore the regulatory mechanism underlying the dissimilatory nitrate reduction (DNR) pathways, nitrate reduction of a series of in-frame deletion mutants was analyzed under different C/N ratios. Deletion of crp1 could accelerate the reduction of nitrite to NO under both low and high C/N ratios. CRP1 is not required for denitrification and actually suppresses production of NO and N₂O gases. Deletion of either of the NO-forming nitrite reductase genes nirK or crp2 blocked production of NO gas. Furthermore, real-time PCR and electrophoretic mobility shift assays (EMSAs) demonstrated that the transcription levels of DNRA-relevant genes such as nap-β (napDABGH), nrfA, and cymA were upregulated by CRP1, while nirK transcription was dependent on CRP2. There are tradeoffs between the different physiological roles of nitrate/lactate, as nitrogen nutrient/carbon source and electron acceptor/donor and CRPs may leverage dissimilatory nitrate reduction pathways for maximizing energy yield and bacterial survival under ambient environmental conditions.IMPORTANCE Some microbes utilize different dissimilatory nitrate reduction (DNR) pathways, including DNR to ammonia (DNRA) and denitrification pathways, for anaerobic respiration in response to ambient carbon/nitrogen ratio changes. Large-scale industrial nitrogen fixation and fertilizer application raise the concern of emission of N₂O, a stable gas with potent global warming potential, as consequence of microbial respiration, thereby aggravating global warming and climate change. However, little is known about the molecular mechanism underlying the choice of two competing DNR pathways. We demonstrate that the global regulator CRP1, which is widely encoded in bacteria, is required for DNRA in S. loihica PV-4 strain, while the CRP2 paralogue is required for transcription of the nitrite reductase gene nirK for denitrification. Sufficient carbon source lead to the predominance of DNRA, while carbon source/electron donor deficiency may result in an incomplete denitrification process, raising the concern of high levels of N₂O emission from nitrate-rich and carbon source-poor waters and soils.

Rapid start-up and stable maintenance of partial nitrification-anaerobic ammonium oxidation treatment of landfill leachate at low temperatures

The current research regarding anaerobic ammonium oxidation (anammox) for the treatment of landfill leachate mainly focuses on a temperature range of 30-35 °C. However, achieving and maintaining anammox at lower temperatures would widen its application for the treatment of landfill leachate. This study, attempts to address this issue by using a combined process involving an upflow anaerobic sludge blanket (UASB), anoxic/oxic (A/O) reactor, anammox reactor (ANAOR), and anaerobic sequencing batch reactor (ASBR) to enrich anammox bacteria at relatively low temperatures. The rapid start-up of the partial nitrification-anammox process for landfill leachate treatment was achieved and maintained at 13-22 °C. The experiment was divided into phase 1 (20-22 °C) and phase 2 (13-15 °C). The results showed that 87.1% of the chemical oxygen demand (COD), 97.4-97.7% of the ammonium nitrogen (NH₄⁺-N), and 93.3-94.7% of the total nitrogen (TN), were removed. At least 29.3% and 11.4% of NH₄⁺-N was removed through anammox in phases 1 and 2, respectively, with an accumulation NO₂^--N ratio of 86.1-88.6%. Candidatus Kuenenia was the dominant anammox bacteria in the anammox process. A low temperature of 13-15 °C did not affect ammonia oxidizing bacteria (AOB), and their relative abundance in the A/O reactor ranged from 27.29% to 33.22%.

Nanoarchitectured structure and population dynamics of anaerobic ammonium oxidizing (anammox) bacteria in a wastewater treatment plant

Studies on microbial community and population dynamics are essential for the successful development, monitoring and operation of biological wastewater treatment systems. Especially for novel or sustainable systems such as the anaerobic ammonium oxidizing (anammox) process that are not yet well explored. Here we collected granular microbial sludge samples and investigated a community of anammox bacteria over a period of four years, divided into eight stages in a full scale simultaneous partial nitrification, anammox and denitrification (SNAD) process for treating landfill leachate. Specific qPCR primers were designed to target and quantify the two most abundant anammox species, Candidatus Kuenenia stuttgartiensis (KS) and Candidatus Brocadia anammoxidans (BA). The two species were monitored and could explain the dynamic shift of the anammox community corresponding to the operating conditions. Using the newly designed KS-specific primer (KSqF3/KSqR3) and BA-specific primer (BAqF/BAqR), we estimated the amounts of KS and BA to be in the range of 6.2 × 10⁶ to 5.9 × 10⁸ and 1.1 × 10⁵ to 4.1 × 10⁷ copies μg^-1 DNA, respectively. KS was found to be the dominant species in all anammox granules studied and played an important role in the formation of granules. The KS/BA ratio was positively correlated to the size of granules in the reactor and ammonia nitrogen removal efficiency of the treatment plant.

Performance of the anammox process treating low-strength municipal wastewater under low temperatures: Effect of undulating seasonal temperature variation

In the anammox process treating low-strength municipal wastewater, the effect of common seasonal temperature variation (15.1 °C-22.2 °C) on performance was studied. In autumn and winter, the nitrogen removal rate (NRR) decrement of 0.038kgN/(m³·d) (17.9 °C → 15.1 °C) was nearly threefold higher than 0.014kgN/(m³·d) (22.2 °C → 17.9 °C), which showed that lower temperature laid more negative impact on nitrogen removal. ¹⁵N isotope tracing tests confirmed that the contribution of denitrification to nitrogen removal was far less than anammox, and anammox contributed more at 15.1 °C (91.7%) than 21.9 °C (78.9%). Anammox bacteria could adapt to lower temperature after short-term acclimatization, especially the dominant genus Ca. Brocadia increased from 1.8% to 2.5% and its abundance was significantly correlated with nitrogen consumption (p < 0.05). Above findings suggest that the adaptability of Ca. Brocadia could provide the possibility to maintain nitrogen removal performance at lower temperature. In spring, the improved maximum anammox activity from 2.85 to 3.23mgNH₄⁺-N/(gVSS·h) indicated the recovered removal capacity.

A stable simultaneous anammox, denitrifying anaerobic methane oxidation and denitrification process in integrated vertical constructed wetlands for slightly polluted wastewater

Anaerobic ammonium oxidation (anammox), denitrifying anaerobic methane oxidation bacteria (DAMO) have received great attention for their excellent performance in nitrogen removal. However, not much study focused on the co-existence of anammox, DAMO, and denitrification in constructed wetlands, not to mention the advantage of their application in mitigating the necessary byproduct nitrous oxide (N₂O), methane (CH₄) from the biodegradation process. In this study, the result indicated the construction of integrated vertical constructed wetlands (IVCWs) contributed to the high-efficient stable simultaneous anammox, DAMO and denitrification (SADD) process for the nutrients removal, with denitrification being the least contributor to nitrogen reduction. Besides the succession of SADD process was largely the driver for the variation of N₂O, CH₄ emission. The structural equation method (SEM) further suggested that the three biological pathways of qnorB/bacteria, archaea/qnorB, and anammox/nirK accounted for the N₂O production, as were top-controlled by mcrA/DAMO in IVCWs. Besides the anammox-associated nitrifier denitrification was the main source for N₂O production. And that the trade-off effect between the CH₄ and N₂O production was exerted by the DAMO, while the influence was far from satisfactory under the methane constraints.

Nitrate removal from low carbon-to-nitrogen ratio wastewater by combining iron-based chemical reduction and autotrophic denitrification

Nitrate removal from low carbon-to-nitrogen ratio (C/N) wastewater has always been a knotty problem due to the deficiency of organics. Here, a novel iron-based chemical reduction and autotrophic denitrification (ICAD) system was developed. ICAD system could maintain average nitrate removal efficiency of 97.2% for 131 days with feeding 20.3 mg NO₃^--N/L at hydraulic retention time (HRT) of 24 h. The optimal operational conditions was further explored, and results demonstrated that average nitrate removal efficiency of 85.5% and 98.4% could be achieved at HRT of 12 h and 24 h (influent 20.3 mg NO₃^--N/L), while average nitrate removal efficiency could reach 96.3% at optimal HRT of 12 h (influent 10.3 mg NO₃^--N/L). Hydrogenophaga, which can carry out hydrogenotrophic denitrification, showed a positive correlation with nitrate removal efficiency of the ICAD system. Low cost and simple operation make the ICAD system suitable for large-scale application.

Nitrate reduction in the reed rhizosphere of a riparian zone: From functional genes to activity and contribution

The increased nitrogen (N) fertilizer usage caused substantial nitrate (NO₃^-) leaching into groundwater and eutrophication in downstream aquatic systems. Riparian zones positioned as the link interfaces of terrestrial and aquatic environments are effective in NO₃^- removal. However, the microbial mechanisms regulating NO₃^- reduction in riparian zones are still unclear. In this study, four microbial NO₃^- reduction processes were explored in fine-scale riparian soil horizons by isotopic tracing technique, qPCR of functional gene, high-throughput amplicon sequencing, and phylogenetic molecular ecological network analysis. Interestingly, anaerobic ammonium oxidation (anammox) contributed to NO₃^- removal of up to 48.2% only in waterward sediments but not in landward soil. Denitrification was still the most significant contributor to NO₃^- reduction (32.0-91.8%) and N-losses (51.7-100%). Additionally, dissimilatory nitrate reduction to ammonium (DNRA) played a key role in NO₃^- reduction (4.4-67.5%) and was even comparable to denitrification. Community structure analysis of denitrifying, anammox, and DNRA bacterial communities targeting the related functional gene showed that spatial heterogeneity played a greater role than both temporal and soil type (rhizosphere and non-rhizosphere soil) variability in microbial community structuring. Denitrification and DNRA communities were diverse, and their activities did not depend on gene abundance but were significantly related to organic matter, suggesting that gene abundance alone was insufficient in assessing their activity in riparian zones. Based on networks, DNRA plays a keystone role among the microbial NO₃^- reducers. As the last line of defense in the interception of terrestrial NO₃^-, these findings contribute to our understanding of NO₃^- removal mechanisms in riparian zones, and could potentially be exploited to reduce the diffusion of NO₃^- pollution.

Nitrogen loss by anaerobic ammonium oxidation in a mangrove wetland of the Zhangjiang Estuary, China

Anaerobic ammonium oxidation (anammox), a microbial process in which NH₄⁺ is oxidized to N₂ gas, is considered a significant nitrogen cycle process, but its significance in mangrove wetland sediments, particularly its depth- and genus-specific distribution and activity have remained uncertain. Here we report the vertical distribution, abundance, activity and role of anammox bacteria in mangrove sediments of Zhangjiang Estuary, China. We used stable isotope-tracer techniques, 16S rRNA and anammox bacterial functional gene (Hydrazine synthase B: hzsB) clone libraries and quantitative polymerase chain reaction (qPCR) assays, along with an assessment of nutrient profiles of sediment core samples. We observed a widespread occurrence of anammox bacteria at different depths of mangrove sediments. The abundance of anammox bacterial 16S rRNA and hzsB genes ranged from 0.41×10⁷ to 9.74×10⁷ and from 0.42×10⁶ to 6.44×10⁶ copies per gram of dry soil and peaked in the upper layer of mangrove sediments. We also verified the co-occurrence of different genera of anammox microorganisms in mangrove sediments, with Candidatus Scalindua and Candidatus Kuenenia being the dominant genera. Potential anammox rates ranged from 4.83 to 277.36 nmolN₂·g^-1·d^-1 at different depths of sediment cores, and the highest rates were found in the deeper layer (70-100cm) of mangrove sediments. Scaling our findings up to the entire mangrove system, we estimated that anammox hotspots accounted for a loss of 751 gN·m^-2·y^-1, and contributed to over 12% of the nitrogen lost from the deeper layer of mangrove sediments in this region.

Denitrification is the main microbial N loss pathway on the Qinghai-Tibet Plateau above an elevation of 5000 m

Soil nitrogen (N) deficiency is the major factor contributing to low primary productivity on the Qinghai-Tibet Plateau. However, most of our understanding of N cycling is still based on human disturbed environments, and the microbial mechanisms governing N loss in low primary productivity environment remain unclear. This study explores three microbial N loss pathways in eight wetland and dryland soil profiles from the Qinghai-Tibet Plateau, at an elevation of above 5000 m with little human activity, using ¹⁵N isotopic tracing slurry technology, quantitative PCR, and high-throughput sequencing. No denitrifying anaerobic methane oxidation was detected. Anammox occurred in two of the wetland (n = 4) and dryland (n = 4) soil profiles, while denitrification widely occurred and was the dominant N loss pathway in all samples. Where denitrification and anammox co-occurred, both abundance and activity were higher in wetland than in dryland soils and higher in surface than in subsurface soils. In comparison with non-anammox sites, nitrate levels initiate anammox-related N cycling. High-throughput sequencing and network analysis of nirK, nirS, nosZ, and hzsB gene communities showed that Bradyrhizobiaceae (a family of rhizobia) may play a dominant role in N loss pathways in this region. Given the geological evolution and relatively undisturbed habitat, these findings strongly suggest that denitrification is the dominant N loss pathway in terrestrial habitats of the Qing-Tibet Plateau with minimal anthropogenic activity.

Robustness of anammox granular sludge treating low-strength sewage under various shock loadings: Microbial mechanism and little N2O emission

With the increasing application of anammox for the treatment of high-strength industrial wastewater, application of anammox in municipal sewage has been gaining more attention. Sludge granulation in particular enhances the enrichment and retention of anammox bacteria in municipal sewage treatment systems. However, the performance of granular sludge under continuous and varying hydraulic loading shock remains little understood. In this study, the robustness of anammox granular sludge in treating low-strength municipal sewage under various shock loadings was investigated. Results showed that an upflow anaerobic sludge blanket (UASB) reactor with anammox granules performed well, with anammox specific activity up to 0.28 kg N/kg VSS/day and anti-loading shock capability up to 187.2 L/day during the 8-month testing period. The accumulation rate of N₂O (<0.01 kg N/kg VSS/day) in the liquid phase was seven times higher than that of the gas phase, which could be mainly attributed to the incomplete denitrification and insufficient carbon source. However, only a small part of the produced N₂O escaped into the atmosphere. High-throughput sequencing and molecular ecological network analyses also identified the bacterial diversity and community structure, indicating the potential resistance against loading shock. The composition and structural analyses showed that polysaccharides were an important functional component in the tightly bound extracellular polymeric substances (TB-EPS), which was the major EPS layer of anammox granules. Scanning electron microscopy (SEM) also showed that the gaps in between the anammox-clusters in the granules inhibit the flotation of the sludge and ensure efficient settling and retention of anammox granules.

Nitrogen-associated niche characteristics and bacterial community estimated by 15N-DNA-stable isotope probing in one-stage partial nitritation/anammox process with different ammonium loading

Anaerobic ammonium oxidation coupled with partial nitritation is critical for cleaner production in sewage treatment. The long-term effects of high- and low-strength influent ammonium (NH₄⁺-N) on the anammox activity, ecological niche characteristics and active microbial community were investigated in a one-stage partial nitritation/anammox (PN/A) process. The total nitrogen (TN) removal efficiency was up to 90% with influent NH₄⁺-N of 192 mg/L. The ¹⁵N-isotope pairing technique illustrated that the potential anammox rate could reach to 3507.8 nmoL/g-sludge/h, accounting for 73.2% of dinitrogen production. As the influent NH₄⁺-N decreased to 63 mg/L, the anammox population significantly decreased and the Nitrospira became the dominant specialized species in the PN/A system. The Nitrobacter had the smallest niche overlap value and the furthest ecological distance to the anammox bacteria among the seven investigated nitrogen conversion-related genes along the influent NH₄⁺-N concentration gradient, indicating different ecological similarities. The redundancy analysis showed that the rise of dissolved oxygen caused by low NH₄⁺-N might be the main cause of the excessive proliferation of the Nitrospira. The ¹⁵N-DNA-stable isotope probing illustrated that both the class Anaerolineae and Proteobacteria had closely symbiotic relations with the Planctomycetacia in this in situ surveys. This study provides a deep understanding of PN/A process treating low-ammonium mainstream wastewater from the viewpoint of microecology.

Quantify the contribution of anammox for enhanced nitrogen removal through metagenomic analysis and mass balance in an anoxic moving bed biofilm reactor

In this study, enhanced nitrogen removal through in situ enrichment of anammox bacteria was successfully obtained in a full-scale municipal wastewater treatment plant (WWTP). The WWTP was an anaerobic-anoxic-oxic (AAO) process and upgraded by adding moving carriers into the anoxic zone. Enhanced nitrogen removal was obtained during almost two years of operation. The significant nitrogen removal might be associated with the in situ enrichment of anammox bacteria on the adding carriers, as revealed by the comprehensive results of molecular analysis and ¹⁵N-stable isotope tracing tests. Quantitative PCR results indicated that anammox bacteria in the anoxic-carrier biofilms presented a higher abundance than flocculent sludge (16S rRNA: P < 0.005; HzsB: P < 0.042). The 16S rRNA amplicon sequencing showed significant differences in the phylum Planctomycetes (P < 0.001) between anoxic-carrier biofilms and flocculent sludge. And metagenomic sequencing analysis further revealed the anammox relative abundance in the anoxic-carrier biofilms was significantly higher than the reported level in the flocculent sludge of conventional WWTPs. In addition, ¹⁵N-stable isotope tracing tests showed that anammox could be combined with nitrate reduction by the anoxic-carrier biofilms. Thus, enriched anammox bacteria might contribute to nitrogen loss and lead to improvements in the nitrogen removal, which was also supported by the mass balance analysis of organic carbon, nitrogen, and phosphorus of the WWTP. Overall, this study suggests that anoxic-carrier biofilms might be a candidate to enhance nitrogen removal through partial anammox in municipal WWTPs.

Comparative study on pilots between ANAMMOX favored conditions in a partially saturated vertical flow constructed wetland and a hybrid system for rural wastewater treatment

The objective of this research was to evaluate the nitrogen removal in a single stage rural wastewater treatment system. It was a modified subsurface vertical flow (SSVF) constructed wetland. The so-called Anaerobic Ammonium Oxidation(ANAMMOX) process is favored by imposing a saturated zone at the bottom of the basin. The nitrogen removal performances of this modified SSVF were compared to those of a conventional hybrid system where the well-known nitrification-denitrification process is performed. This study was carried out using three lab-scale pilots of constructed wetlands during four months: (1) a hybrid constructed wetlands with a reed-Phragmites australis SSVF bed in serial with a cattail-Typha angustofolia SSHF bed (SSVF_p + SSHF). (2) A reed-Phragmites australis SSVF bed partially saturated at 40% of its depth (SSVF_PS); (3) A cattail-Typha angustofolia SSVF bed partially saturated at 40% of its depth (SSVF_TS). The results showed that the three configurations used in this study were efficient for most of the pollutants reduction. In fact, single-stage reactors have achieved similar chemical oxygen demand (COD) removal in comparison to the two-stage reactor independently of the macrophytes species. However, for Total Kjeldahl Nitrogen (TKN), a slightly higher nitrogen removal efficiency was recorded for (SSVF _p + SSHF) with an average removal rate of 53% versus 48% and 51% for SSVF _PS and SSVF_TS respectively. These findings were highlighted with fluorescent in situ hybridization (FISH) analysis, which demonstrated the presence of major differences in the community composition and abundance of the bacteria involved with denitrification and nitrification in the three systems. In fact, SSVF_P of the hybrid system was characterized by highest relative abundance of nitrifying bacteria (13% Nitrosomonas, 11% Nitrosospira, 14% Nitrospira and 10% Nitrobacter). While, the SSHF of hybrid system had larger number of denitrifying species than SSVF, with relative abundances of pseudomonas (3%), Paracoccus (9%), Zoogloea (6%), Thauera (4%), Thiobacillus (2%) and Aeromonas (1%). Interestingly, in the SSVF_ST (planted with Thypha angustofolia) where the relative abundance of nitrifying bacteria was very low (4% Nitrosomonas, 4% Nitrosospira, 4% Nitrospira and 1% Nitrobacter), we have detected the presence of ANAMMOX bacteria (3%). Accordingly SSVF_ST in the presence of Thypha angustofolia have favored the development of ANAMMOX activity in comparison to the other configurations.

Long-term impacts of graphene oxide and Ag nanoparticles on anammox process: Performance, microbial community and toxic mechanism

The increasing application of engineered nanoparticles (NPs) has posed an emerging challenge to constructed wetland wastewater treatment. The performance, microbial community and toxic mechanism of anammox-based unplanted subsurface-flow constructed wetlands (USFCWs) were investigated under the long-term exposure of different graphene oxides (GOs) and Ag NP concentrations. Results showed that the addition of GO could promote TN removal, manifesting as function anammox bacteria C. Anammoxoglobus having a relative high abundance, for GO did not cause significant damage to the cell integrity though there was an increase in ROS concentrations. TN removal would not be obviously affected under exposure of 1 mg/L Ag NPs, for the function gene related to cell biogenesis and repair was up-regulated; while the addition of 10 mg/L Ag NPs would have an inhibiting effect on TN removal in the USFCWs, for the disappearance of some species having anammox ability. Key enzymes of anammox process (NIR and HDH) decreased to some extent under GO and Ag NP exposure, and function gene of defense mechanisms had an increase trend in samples.

Nitrogen release and its influence on anammox bacteria during the decay of Potamogeton crispus with different values of initial debris biomass

Aquatic macrophytes play a significant role in the nutrient cycle of freshwater ecosystems. However, nutrients from plant debris release into both sediments and overlying water if not timely harvested. To date, minimal information is available regarding nutrient release and its subsequent influences on bacterial communities with decaying debris. In this study, Potamogeton crispus was used as a model plant. Debris biomass levels of 0 g (control, J-CK), 10 g dry weight (DW) (100 g DW/m², J-10 g), 40 g DW (400 g DW/m2, J-40 g) and 80 g DW (800 g DW/m², J-80 g) were used to simulate the different biomass densities of P. crispus in field. The physicochemical parameters of overlying water and sediment samples were analysed. The community composition of anammox bacteria in the sediment was also analysed using 16S rRNA genes as markers. The results showed that dissolved oxygen and pH dramatically decreased, whereas total nitrogen (TN) and NH₄⁺-N concentrations increased in the overlying water in the initial stage of P. crispus decomposition. However, NO₃^--N concentration changes in the overlying water were more complicated. The concentrations of organic matter, TN and NH₄⁺-N in the sediment all increased, but the rate of increase varied among the groups with different initial biomass levels, indicating that these physicochemical properties in sediment are significantly affected by debris biomass level and decay time. In addition, the order of anammox bacteria abundance was J-40 g > J-CK > J-80 g > J-10 g. Moreover, the community structure of anammox bacteria were simpler compared to that of J-CK as debris biomass level increased. The results demonstrate that P. crispus debris decomposition could affect the ecological distribution of anammox bacteria. Such influence clearly varies with varying amounts of P. crispus biomass debris. This information could be useful for the management of aquatic macrophytes in freshwater ecosystems.

Denitrification- and anammox-dominant simultaneous nitrification, anammox and denitrification (SNAD) process in subsurface flow constructed wetlands

Simultaneous nitrification, anammox and denitrification (SNAD) process was developed in subsurface flow constructed wetlands (SFCWs) to treat polluted surface water. The effects of vegetation, hydraulic retention time (HRT), C/N, and influent nitrogen forms on nitrogen removal and microbial communities were investigated. Results showed that denitrification- and anammox-dominant SNAD corresponded to nitrate- and ammonia-dominant influent, respectively, and both could achieve more efficient nitrogen removal in planted SFCWs than the unplated. These higher efficiencies were due to the microbial growth, organic carbon release, oxygen supply and plant uptake promoted by vegetation. The electron donors accelerated denitrification but inhibited ammonia oxidation with deficient oxygen. Anammox contributed to nitrogen removal of 27.34% under oxygen-limited conditions without vegetation. Anammox combined with denitrification and plant uptake were over 90% in planted SFCWs. For the investigated factors, the ammonia, nitrate and C/N were the most significant ones influencing the microbial communities, further nitrogen removal pathways and performances.

A novel partial-denitrification strategy for post-anammox to effectively remove nitrogen from landfill leachate

Anaerobic ammonia oxidation (anammox) has shown great promise for nitrogen removal in low C/N wastewater such as landfill leachate. However, 11% of NO₃^--N is stoichiometrically produced, which decreases the total nitrogen (TN) removal efficiency. In this study, a strategy for post anammox was developed to effectively remove TN from leachate. A tandem conversion of NO₃^--N to NO₂^--N (partial denitrification) was accomplished by supplying substrate for subsequent anammox, by supplementing the electron donor deficient condition. This process greatly improved NH₄⁺-N and TN removal from leachate, reaching a 95% efficiency. Quantitative real-time polymerase chain reaction results showed that a high abundance of anammox bacteria, with a titer of 10⁹ copy numbers/L, was enriched, accounting for 9.66% of the total bacterial community, and indicating the success of this novel strategy for the TN removal in leachate.

Microbial Nitrogen Cycle Hotspots in the Plant-Bed/Ditch System of a Constructed Wetland with N2O Mitigation

Artificial microbial nitrogen (N) cycle hotspots in the plant-bed/ditch system were developed and investigated based on intact core and slurry assays measurement using isotopic tracing technology, quantitative PCR and high-throughput sequencing. By increasing hydraulic retention time and periodically fluctuating water level in heterogeneous riparian zones, hotspots of anammox, nitrification, denitrification, ammonium (NH₄⁺) oxidation, nitrite (NO₂^-) oxidation, nitrate (NO₃^-) reduction and DNRA were all stimulated at the interface sediments, with the abundance and activity being about 1-3 orders of magnitude higher than those in nonhotspots. Isotopic pairing experiments revealed that in microbial hotspots, nitrite sources were higher than the sinks, and both NH₄⁺ oxidation (55.8%) and NO₃^- reduction (44.2%) provided nitrite for anammox, which accounted for 43.0% of N-loss and 44.4% of NH₄⁺ removal in riparian zones but did not involve nitrous oxide (N₂O) emission risks. High-throughput analysis identified that bacterial quorum sensing mediated this anammox hotspot with B.fulgida dominating the anammox community, but it was B. anammoxidans and Jettenia sp. that contributed more to anammox activity. In the nonhotspot zones, the NO₂^- source (NO₃^- reduction dominated) was lower than the sink, limiting the effects on anammox. The in situ N₂O flux measurement showed that the microbial hotspot had a 27.1% reduced N₂O emission flux compared with the nonhotspot zones.

Pathway governing nitrogen removal in artificially aerated constructed wetlands: Impact of aeration mode and influent chemical oxygen demand to nitrogen ratios

This study aimed at assessing the influence of aeration mode and influent COD/N ratio on nitrogen removal in constructed wetlands (CWs). The results showed that a simultaneous partial nitrification, anammox and denitrification (SNAD) process was established in the intermittent aerated V1. While nitrogen removal pathway gradually changed from partial nitrification-denitrification to complete nitrification-denitrification along with reducing COD/N ratio in the continuous limited aerated V2. Effective inhibition of NOBs under intermittent aeration conditions, good retention of anammox bacteria biomass and much faster depletion of COD prior to substantial NH₄⁺-N conversion jointly led to the successful achievement of stable SNDA process with elevated influent COD/N ratios in V1. Furthermore, the presence of SNAD ensured a robust ammonium (84-92%) and TN (80-91%) removal efficiency in V1 under varying COD loading rates. In contrast, the TN removal efficiency decreased rapidly along with the reducing influent COD/N ratios in V2.

Characterization of Microbial Communities in Pilot-Scale Constructed Wetlands with Salicornia for Treatment of Marine Aquaculture Effluents

Microorganisms play an essential role in the performance of constructed wetlands (CWs) for wastewater treatment. However, there has been limited discussion on the characteristics of microbial communities in CWs for treatment of effluents from marine recirculating aquaculture systems (RAS). This study is aimed at characterizing the microbial communities of pilot-scale CWs with Salicornia bigelovii for treatment of saline wastewater from a land-based Atlantic salmon RAS plant located in Northern China. Illumina high-throughput sequencing was employed to identify the profile of microbial communities of three CWs receiving wastewater under different total ammonia nitrogen (TAN) concentrations. Results of this study showed remarkable spatial variations in diversity and composition of microbial communities between roots and substrates in three CWs, with distinct response to different TAN concentrations. In particular, Proteobacteria, Firmicutes, Cyanobacteria, and Bacteroidetes were predominant in roots, while Cyanobacteria, Proteobacteria, Firmicutes, Verrucomicrobia, and Bacteroidetes were prevalent in substrates. Moreover, redundancy analysis indicated that specific functional genera, such as Nitrosopumilus, Vibrio, Pseudoalteromonas, Nitrospina, and Planctomyces, played key roles in the removal of nitrogen/phosphorus pollutants and growth of wetland plants. From a microorganism perspective, the findings of this study could contribute to better understanding of contaminants' removal mechanism and improved management of CWs for treatment of effluents from land-based marine aquaculture.

High growth potential and nitrogen removal performance of marine anammox bacteria in shrimp-aquaculture sediment

Anaerobic ammonium oxidation (anammox) bacteria were enriched in continuous packed-bed columns with marine sediment. One column (SB-C) was packed with only marine sediment collected from a shrimp-aquaculture pond, and another column (SB-AMX) was inoculated with marine anammox bacteria (MAB) as a control. These columns were continuously fed with natural or artificial seawater including ammonium (NH₄⁺) and nitrite (NO₂^-). The SB-AMX showed anammox activities from the beginning and continued for over 200 days. However, the SB-C had no nitrogen removal performance for over 170 days. After adding a bicarbonate solution (KHCO₃) to the sediment-only packed column, anammox activity was observed within 13 days. The column exhibited a nitrogen removal efficiency (NRE) of 88% at a nitrogen loading rate (NLR) of 1.0 kg-N·m^-3·day^-1, which was comparable to the control one. A next-generation sequencing analysis revealed the predominance of MAB related to "Candidatus Scalindua spp.". In addition, the co-occurrence of sulfur-oxidizing denitrifiers was observed, which suggests their symbiotic relationship. This study suggests the applicability of MAB for in-situ bioremediation of nitrogen-contaminated marine sediments and reveals a potential microbial interaction between anammox and sulfur-oxidizing communities responsible for nitrogen and sulfur cycling in marine aquaculture systems.

Analysis of key microbial community during the start-up of anaerobic ammonium oxidation process with paddy soil as inoculated sludge

A sequencing batch reactor (SBR)-anaerobic ammonium oxidation (anammox) system was started up with the paddy soil as inoculated sludge. The key microbial community structure in the system along with the enrichment time was investigated by using molecular biology methods (e.g., high-throughput 16S rRNA gene sequencing and quantitative PCR). Meanwhile, the influent and effluent water quality was continuously monitored during the whole start-up stage. The results showed that the microbial diversity decreased as the operation time initially and increased afterwards, and the microbial niches in the system were redistributed. The anammox bacterial community structure in the SBR-anammox system shifted during the enrichment, the most dominant anammox bacteria were CandidatusJettenia. The maximum biomass of anammox bacteria achieved 1.68×10⁹copies/g dry sludge during the enrichment period, and the highest removal rate of TN achieved around 75%.

High-throughput analysis of anammox bacteria in wetland and dryland soils along the altitudinal gradient in Qinghai-Tibet Plateau

This study investigated the diversity, community composition, and abundance of anaerobic ammonium oxidation (anammox) bacteria along the altitudinal gradient in Qinghai–Tibet Plateau. Two types of soil samples (wetland and dryland soils, n = 123) were collected from 641 m to 5,033 m altitudes. Polymerase chain reaction (PCR) screening showed that anammox were not widespread, and were only detected in 9 sampling sites of the 50 sites tested by amplifying the 16S rRNA genes. Then, only samples collected from Linzhi (2,715 m), Rikaze (4,030 m), and Naqu (5,011 m), which were positive for the presence of anammox, were further processed to explore the biogeography of anammox bacteria in Qinghai–Tibet Plateau. Results of high‐throughput sequencing targeting the hydrazine synthesis β‐subunit (hzsB) gene revealed the presence of three known anammox genera (Candidatus Brocadia, Candidatus Jettenia, and Candidatus Kuenenia) in both soil types. Their diversity, community composition, and abundance did not show significant variation with altitude at large scale. However, it was the small‐scale environmental heterogeneities between wetland and dryland soils that determined their biogeographical distribution. Specifically, the dryland soils had higher diversity of anammox bacteria than the wetland soils, but their abundance patterns varied. The community composition of anammox bacteria were found to be influenced by soil nitrate content.

Sulfide-Induced Dissimilatory Nitrate Reduction to Ammonium Supports Anaerobic Ammonium Oxidation (Anammox) in an Open-Water Unit Process Wetland

Open-water unit process wetlands host a benthic diatomaceous and bacterial assemblage capable of nitrate removal from treated municipal wastewater with unexpected contributions from anammox processes. In exploring mechanistic drivers of anammox, 16S rRNA gene sequencing profiles of the biomat revealed significant microbial community shifts along the flow path and with depth. Notably, there was an increasing abundance of sulfate reducers (Desulfococcus and other Deltaproteobacteria) and anammox microorganisms (Brocadiaceae) with depth. Pore water profiles demonstrated that nitrate and sulfate concentrations exhibited a commensurate decrease with biomat depth accompanied by the accumulation of ammonium. Quantitative PCR targeting the anammox hydrazine synthase gene, hzsA, revealed a 3-fold increase in abundance with biomat depth as well as a 2-fold increase in the sulfate reductase gene, dsrA These microbial and geochemical trends were most pronounced in proximity to the influent region of the wetland where the biomat was thickest and influent nitrate concentrations were highest. While direct genetic queries for dissimilatory nitrate reduction to ammonium (DNRA) microorganisms proved unsuccessful, an increasing depth-dependent dominance of Gammaproteobacteria and diatoms that have previously been functionally linked to DNRA was observed. To further explore this potential, a series of microcosms containing field-derived biomat material confirmed the ability of the community to produce sulfide and reduce nitrate; however, significant ammonium production was observed only in the presence of hydrogen sulfide. Collectively, these results suggest that biogenic sulfide induces DNRA, which in turn can explain the requisite coproduction of ammonium and nitrite from nitrified effluent necessary to sustain the anammox community.IMPORTANCE This study aims to increase understanding of why and how anammox is occurring in an engineered wetland with limited exogenous contributions of ammonium and nitrite. In doing so, the study has implications for how geochemical parameters could potentially be leveraged to impact nutrient cycling and attenuation during the operation of treatment wetlands. The work also contributes to ongoing discussions about biogeochemical signatures surrounding anammox processes and enhances our understanding of the contributions of anammox processes in freshwater environments.

Treatment of anaerobic digestate supernatant in microbial fuel cell coupled constructed wetlands: Evaluation of nitrogen removal, electricity generation, and bacterial community response

The objective of this study was to assess whether the improved configuration of vertical upflow constructed wetlands (CWs) coupled with aeration in the centre part and effluent recirculation can strengthen the treatment performance of high strength anaerobic digestate supernatant. Moreover, electricity generation and bacterial community characteristics were also examined. The results indicated that intermittent aeration in vertical upflow CWs significantly enhanced organic matter (>69%, 214-401g/m²d) and ammonium (>92%, 62-138g/m²d) removal, regardless of aeration position. However, the removal efficiency of total nitrogen (TN) was limited to 24%-40%. Effluent recirculation was examined to enhance TN removal up to 69% in the central aerated CW, as compared to 44% observed in the bottom aerated CW. Accordingly, significantly higher abundances of denitrifiers (nirK and nirS) and anaerobic ammonium oxidation bacteria (anammox) were found in the bottom layer of the central aerated CW. In addition, the central aerated CW coupled with effluent recirculation generated significantly higher electricity (maximum power density of 112mW/m²) than traditional bottom aerated CWs when integrated with a microbial fuel cell (MFC). Results confirmed the application potential of this new configuration of upflow CW integrated with central aeration and effluent recirculation.

Pathways regulating the removal of nitrogen in planted and unplanted subsurface flow constructed wetlands

Single-stage constructed wetlands (CWs) are characterized by a low potential for N removal. Understanding the pathways regulating N cycling as well as their dependence on environmental variables might improve the potential of CWs for N removal and results in more accurate simulation tools. In this study we employed qPCR targeting marker functional genes (amoA, nirK, nirS, clade I and II nosZ) or microorganisms (anammox) regulating key pathways of N cycling to unravel their relative importance. Furthermore, the influence of plant species on treatment performance was studied. Our findings indicated nitrification-denitrification as the principal route of N removal in CWs, while anammox did not have a strong contribution. Evidence was also arisen that ammonia oxidizing archaea (AOA) contributed on NH3 oxidation. Overall, plant species had a weak effect on the abundance of N functional genes (amoA of AOA), but it strongly affected the performance of CWs in terms of N removal in the following order: unplanted < Phragmites communis < Typha latifolia. These findings suggest that plant species stimulate N removal by upregulating the rates that the responsible biochemical pathways operate, probably by increasing O2 supply. In addition, our study revealed differences in indicators linked to N2O emissions. The abundance of clade II nosZ genes remained low across the season scaling down a strong contribution in the reduction of the emitted N2O. The increasing ratios of nosZ/Σnir and nirS/nirK with the progress of season indicate a shift in the composition of denitrifiers towards strains with a lower genetic potential for N2O release. Similar trends were observed among the treatments but the mechanisms differed. The planted treatments stimulated an increase in the ΣnosZ/Σnir ratio, while the unplanted an increase in the nirS/nirK ratio.

Effect of photosynthetically elevated pH on performance of surface flow-constructed wetland planted with Phragmites australis

Combination of emergent and submerged plants has been proved to be able to enhance pollutant removal efficiency of surface flow-constructed wetland (SFCW) during winter. However, intensive photosynthesis of submerged plants during summer would cause pH increase, which may have adverse effects on emergent plants. In this study, nitrogen transformation of lab-scale SFCW under pH gradient of 7.5, 8.5, 9.5 and 10.5 was systematically investigated. The results showed that total nitrogen (TN) removal efficiency decreased from 76.3 ± 0.04 to 51.8 ± 0.04 % when pH increased from 7.5 to 10.5, which was mainly attributed to plant assimilation decay and inhibition of microbe activities (i.e., nitrite-oxidizing bacteria and denitrifiers). Besides, the highest sediment adsorption in SFCW was observed at pH of 8.5. In general, the combination of submerged and emergent plants is feasible for most of the year, but precaution should be taken to mitigate the negative effect of high alkaline conditions when pH rises to above 8.5 in midsummer.

Microbial nitrogen removal pathways in integrated vertical-flow constructed wetland systems

Microbial nitrogen (N) removal pathways in planted (Canna indica L.) and unplanted integrated vertical-flow constructed wetland systems (IVCWs) were investigated. Results of, molecular biological and isotope pairing experiments showed that nitrifying, anammox, and denitrifying bacteria were distributed in both down-flow and up-flow columns of the IVCWs. Further, the N transforming bacteria in the planted IVCWs were significantly higher than that in the unplanted ones (p<0.05). Moreover, the potential nitrification, anammox, and denitrification rates were highest (18.90, 11.75, and 7.84nmolNg(-1)h(-1), respectively) in the down-flow column of the planted IVCWs. Significant correlations between these potential rates and the absolute abundance of N transformation genes further confirmed the existence of simultaneous nitrification, anammox, and denitrification (SNAD) processes in the IVCWs. The anammox process was the major N removal pathway (55.6-60.0%) in the IVCWs. The results will further our understanding of the microbial N removal mechanisms in IVCWs.

Effects of oxygen and carbon content on nitrogen removal capacities in landfill bioreactors and response of microbial dynamics

In this study, landfill bioreactors were tested to treat the recalcitrant leachate-nitrogen and the impacts of relevant operational parameters on its conversion were comprehensively investigated. We found that the highly diverse microbial community in landfill bioreactors could be substantially affected by increasing biodegradable carbon and oxygen content, which led to the whole system's intrinsic nitrogen removal capacity increasing from 50 to 70 %, and meanwhile, the contribution of anammox was detected less than 20 %. The sequencing and q-PCR results showed that microbial community in bioreactor was dominated by Proteobacteria (∼35 %) and Acidobacteria (~20 %) during the whole experiment. The abundance of anammox functioning bacteria (Amx) kept at a stable level (-2.5 to -2.2 log (copies/16S rRNA)) and was not statistically correlated to the abundance of anammox bacteria. However, significant linear correlation (p < 0.05) was determined between the abundance of nirS and Proteobacteria; amoA and AOB. Redundancy analysis (RDA) suggested that although oxygen and biodegradable carbon can both impose effects on microbial community structure, only biodegradable carbon content is the determinant in the total nitrogen removal.