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Nemykin VN, Sabin JR, Kail BW, Upadhyay A, Hendrich MP, Basu P. Influence of the ligand-field on EPR parameters of cis- and trans-isomers in Mo V systems relevant to molybdenum enzymes: Experimental and density functional theory study. J Inorg Biochem 2023; 245:112228. [PMID: 37149488 PMCID: PMC10330323 DOI: 10.1016/j.jinorgbio.2023.112228] [Citation(s) in RCA: 0] [Impact Index Per Article: 0] [Reference Citation Analysis] [Abstract] [Key Words] [MESH Headings] [Grants] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Received: 12/13/2022] [Revised: 04/12/2023] [Accepted: 04/12/2023] [Indexed: 05/08/2023]
Abstract
The electron paramagnetic resonance (EPR) investigation of mononuclear cis- and trans-(L1O)MoOCl2 complexes [L1OH = bis(3,5-dimethylpyrazolyl)-3-tert-butyl-2-hydroxy-5-methylphenyl)methane] reveals a significant difference in their spin Hamiltonian parameters which reflect different equatorial and axial ligand fields created by the heteroscorpionate donor atoms. Density functional theory (DFT) was used to calculate the values of principal components and relative orientations of the g and A tensors, and the molecular framework in four pairs of isomeric mononuclear oxo‑molybdenum(V) complexes (cis- and trans-(L1O)MoOCl2, cis,cis- and cis,trans-(L-N2S2)MoOCl [L-N2S2H2 = N,N'-dimethyl-N,N'-bis(mercaptophenyl)ethylenediamine], cis,cis- and cis,trans-(L-N2S2)MoO(SCN), and cis- and trans-[(dt)2MoO(OMe)]2- [dtH2 = 2,3-dimercapto-2-butene]). Scalar relativistic DFT calculations were conducted using three different exchange-correlation functionals. It was found that the use of hybrid exchange-correlation functional with 25% of the Hartree-Fock exchange leads to the best quantitative agreement between theory and experiment. A simplified ligand-field approach was used to analyze the influence of the ligand fields in all cis- and trans-isomers on energies and contributions of molybdenum d-orbital manifold to g and A tensors and relative orientations. Specifically, contributions that originated from the spin-orbit coupling of the dxz, dyz, and dx2-y2 orbitals into the ground state have been discussed. The new findings are discussed in the context of the experimental data of mononuclear molybdoenzyme, DMSO reductase.
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Affiliation(s)
- Victor N Nemykin
- Department of Chemistry, University of Tennessee - Knoxville, Knoxville, TN 37996, USA; Department of Chemistry and Biochemistry, University of Minnesota Duluth, Duluth, MN 55812, USA.
| | - Jared R Sabin
- Department of Chemistry and Biochemistry, University of Minnesota Duluth, Duluth, MN 55812, USA
| | - Brian W Kail
- Department of Chemistry and Biochemistry, Duquesne University, Pittsburgh, PA 15216, USA
| | - Anup Upadhyay
- Department of Chemistry, Carnegie Mellon University, Pittsburgh, PA 15213, USA
| | - Michael P Hendrich
- Department of Chemistry, Carnegie Mellon University, Pittsburgh, PA 15213, USA.
| | - Partha Basu
- Department of Chemistry and Biochemistry, Duquesne University, Pittsburgh, PA 15216, USA; Department of Chemistry and Chemical Biology, Indiana University Purdue University Indianapolis, Indianapolis, IN 46202, USA.
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Dantignana V, Pérez-Segura MC, Besalú-Sala P, Delgado-Pinar E, Martínez-Camarena Á, Serrano-Plana J, Álvarez-Núñez A, Castillo CE, García-España E, Luis JM, Basallote MG, Costas M, Company A. Characterization of a Ferryl Flip in Electronically Tuned Nonheme Complexes. Consequences in Hydrogen Atom Transfer Reactivity. Angew Chem Int Ed Engl 2023; 62:e202211361. [PMID: 36305539 PMCID: PMC10107328 DOI: 10.1002/anie.202211361] [Citation(s) in RCA: 0] [Impact Index Per Article: 0] [Reference Citation Analysis] [Abstract] [Key Words] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Received: 08/02/2022] [Indexed: 12/04/2022]
Abstract
Two oxoiron(IV) isomers (R 2a and R 2b) of general formula [FeIV (O)(R PyNMe3 )(CH3 CN)]2+ are obtained by reaction of their iron(II) precursor with NBu4 IO4 . The two isomers differ in the position of the oxo ligand, cis and trans to the pyridine donor. The mechanism of isomerization between R 2a and R 2b has been determined by kinetic and computational analyses uncovering an unprecedented path for interconversion of geometrical oxoiron(IV) isomers. The activity of the two oxoiron(IV) isomers in hydrogen atom transfer (HAT) reactions shows that R 2a reacts one order of magnitude faster than R 2b, which is explained by a repulsive noncovalent interaction between the ligand and the substrate in R 2b. Interestingly, the electronic properties of the R substituent in the ligand pyridine ring do not have a significant effect on reaction rates. Overall, the intrinsic structural aspects of each isomer define their relative HAT reactivity, overcoming changes in electronic properties of the ligand.
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Affiliation(s)
- Valeria Dantignana
- Institut de Química Computacional i Catàlisi (IQCC), Departament de Química, Universitat de Girona, C/Mª Aurèlia Capmany 69, 17003, Girona, Catalonia, Spain
| | - M Carmen Pérez-Segura
- Departamento de Ciencia de los Materiales e Ingeniería Metalúrgica y Química Inorgánica, Facultad de Ciencias, Instituto de Biomoléculas (INBIO), Universidad de Cádiz, Puerto Real, 11510, Cádiz, Spain
| | - Pau Besalú-Sala
- Institut de Química Computacional i Catàlisi (IQCC), Departament de Química, Universitat de Girona, C/Mª Aurèlia Capmany 69, 17003, Girona, Catalonia, Spain
| | - Estefanía Delgado-Pinar
- Departamento de Química Inorgánica, Instituto de Ciencia Molecular (ICMol), Universidad de Valencia, C/Catedrático José Beltrán, Paterna, 46980, Valencia 2, Spain
| | - Álvaro Martínez-Camarena
- Departamento de Química Inorgánica, Instituto de Ciencia Molecular (ICMol), Universidad de Valencia, C/Catedrático José Beltrán, Paterna, 46980, Valencia 2, Spain
| | - Joan Serrano-Plana
- Institut de Química Computacional i Catàlisi (IQCC), Departament de Química, Universitat de Girona, C/Mª Aurèlia Capmany 69, 17003, Girona, Catalonia, Spain
| | - Andrea Álvarez-Núñez
- Institut de Química Computacional i Catàlisi (IQCC), Departament de Química, Universitat de Girona, C/Mª Aurèlia Capmany 69, 17003, Girona, Catalonia, Spain
| | - Carmen E Castillo
- Departamento de Ciencia de los Materiales e Ingeniería Metalúrgica y Química Inorgánica, Facultad de Ciencias, Instituto de Biomoléculas (INBIO), Universidad de Cádiz, Puerto Real, 11510, Cádiz, Spain
| | - Enrique García-España
- Departamento de Química Inorgánica, Instituto de Ciencia Molecular (ICMol), Universidad de Valencia, C/Catedrático José Beltrán, Paterna, 46980, Valencia 2, Spain
| | - Josep M Luis
- Institut de Química Computacional i Catàlisi (IQCC), Departament de Química, Universitat de Girona, C/Mª Aurèlia Capmany 69, 17003, Girona, Catalonia, Spain
| | - Manuel G Basallote
- Departamento de Ciencia de los Materiales e Ingeniería Metalúrgica y Química Inorgánica, Facultad de Ciencias, Instituto de Biomoléculas (INBIO), Universidad de Cádiz, Puerto Real, 11510, Cádiz, Spain
| | - Miquel Costas
- Institut de Química Computacional i Catàlisi (IQCC), Departament de Química, Universitat de Girona, C/Mª Aurèlia Capmany 69, 17003, Girona, Catalonia, Spain
| | - Anna Company
- Institut de Química Computacional i Catàlisi (IQCC), Departament de Química, Universitat de Girona, C/Mª Aurèlia Capmany 69, 17003, Girona, Catalonia, Spain
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Tran BL, Arita A, Cooksy AL, Carrano CJ. Examination of oxygen atom transfer reactivity of heteroscorpionate dioxo-Mo(VI) complexes: Geometric isomers, solvent effect, intermediates, and catalytic oxidation. Inorganica Chim Acta 2016. [DOI: 10.1016/j.ica.2016.03.035] [Citation(s) in RCA: 5] [Impact Index Per Article: 0.6] [Reference Citation Analysis] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Indexed: 10/22/2022]
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Affiliation(s)
- Charles G. Young
- Department of Chemistry and PhysicsLa Trobe Institute for Molecular ScienceLa Trobe University3086MelbourneVictoriaAustralia
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Paul T, Rodehutskors PM, Schmidt J, Burzlaff N. Oxygen Atom Transfer Catalysis with Homogenous and Polymer-Supported N,N- and N,N,O-Heteroscorpionate Dioxidomolybdenum(VI) Complexes. Eur J Inorg Chem 2016. [DOI: 10.1002/ejic.201600026] [Citation(s) in RCA: 13] [Impact Index Per Article: 1.6] [Reference Citation Analysis] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Indexed: 11/12/2022]
Affiliation(s)
- Tobias Paul
- Inorganic Chemistry; Department of Chemistry and Pharmacy & Interdisciplinary Center for Molecular Materials (ICMM); University of Erlangen-Nürnberg; Egerlandstr. 1 91058 Erlangen Germany
| | - Philipp M. Rodehutskors
- Inorganic Chemistry; Department of Chemistry and Pharmacy & Interdisciplinary Center for Molecular Materials (ICMM); University of Erlangen-Nürnberg; Egerlandstr. 1 91058 Erlangen Germany
| | - Jochen Schmidt
- Inorganic Chemistry; Department of Chemistry and Pharmacy & Interdisciplinary Center for Molecular Materials (ICMM); University of Erlangen-Nürnberg; Egerlandstr. 1 91058 Erlangen Germany
| | - Nicolai Burzlaff
- Inorganic Chemistry; Department of Chemistry and Pharmacy & Interdisciplinary Center for Molecular Materials (ICMM); University of Erlangen-Nürnberg; Egerlandstr. 1 91058 Erlangen Germany
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Carrano CJ. A Family of Homo- and Heteroscorpionate Ligands: Applications to Bioinorganic Chemistry. Eur J Inorg Chem 2016. [DOI: 10.1002/ejic.201501476] [Citation(s) in RCA: 16] [Impact Index Per Article: 2.0] [Reference Citation Analysis] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Indexed: 01/05/2023]
Affiliation(s)
- Carl J. Carrano
- Department of Chemistry and Biochemistry; San Diego State University; 92182-1030 San Diego CA USA
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Heinze K. Bioinspired functional analogs of the active site of molybdenum enzymes: Intermediates and mechanisms. Coord Chem Rev 2015. [DOI: 10.1016/j.ccr.2015.04.010] [Citation(s) in RCA: 40] [Impact Index Per Article: 4.4] [Reference Citation Analysis] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Indexed: 12/29/2022]
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Mogesa B, Perera E, Rhoda HM, Gibson JK, Oomens J, Berden G, van Stipdonk MJ, Nemykin VN, Basu P. Solution, Solid, and Gas Phase Studies on a Nickel Dithiolene System: Spectator Metal and Reactor Ligand. Inorg Chem 2015; 54:7703-16. [PMID: 26244772 DOI: 10.1021/acs.inorgchem.5b00531] [Citation(s) in RCA: 16] [Impact Index Per Article: 1.8] [Reference Citation Analysis] [Abstract] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Indexed: 11/28/2022]
Abstract
The syntheses of cationic nickel complexes using N,N'-dimethyl piperazine 2,3-dithione (Me2Dt(0)) and N,N'-diisopropyl piperazine 2,3-dithione ((i)Pr2Dt(0)) ligands are reported. These ligands were used in synthesizing bis and tris(dithione)Ni(II) complexes as tetrafluoroborate or hexafluorophosphate salts, i.e., [Ni((i)Pr2Dt(0))2][BF4]2 ([1a][BF4]2), [Ni((i)Pr2Dt(0))2][PF6]2 ([1a][PF6]2), [Ni(Me2Dt(0))2][BF4]2 ([1b][BF4]2), [Ni((i)Pr2Dt(0))3][BF4]2 ([2a][BF4]2), and [Ni((i)Pr2Dt(0))3][PF6]2 ([2a][PF6]2), respectively. Complex [2a][PF6]2 was isolated from a methanolic solution of [1a][PF6]2. Compound [1a][BF4]2 crystallizes in a trigonal crystal system (space group, P31/c) and exhibits unique packing features, whereas [2a][BF4]2 crystallizes in a monoclinic (P21/n) space group. Cyclic voltammograms of [1a][BF4]2 and [1b][BF4]2 are indicative of four reduction processes associated with stepwise single-electron reduction of the ligands. Spectroelectrochemical experiments on [1a][BF4]2 exhibit an intervalence charge transfer (IVCT) transition as a spectroscopic signature of the mixed-valence [Ni((i)Pr2Dt(0))((i)Pr2Dt(1-))](-) species. Analysis of this IVCT band suggests that this ligand based mixed valence complex, [Ni((i)Pr2Dt(0))((i)Pr2Dt(1-))](-), behaves more like a traditional class II/III metal based mixed-valence complex. The density functional theory (DFT) and time dependent DFT calculations provide a theoretical framework for understanding the electronic structures and the nature of excited states of the target compounds that are consistent with their spectroscopic and redox properties. Vibrational spectra of [1a](2+) and [2a](2+) were investigated as discrete species in the gas phase using infrared multiple photon dissociation (IRMPD) spectroscopy.
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Affiliation(s)
- Benjamin Mogesa
- †Department of Chemistry and Biochemistry, Duquesne University, Pittsburgh, Pennsylvania 15282, United States
| | - Eranda Perera
- †Department of Chemistry and Biochemistry, Duquesne University, Pittsburgh, Pennsylvania 15282, United States
| | - Hannah M Rhoda
- ‡Department of Chemistry and Biochemistry, University of Minnesota-Duluth, Duluth, Minnesota 55812, United States
| | - John K Gibson
- §Chemical Sciences Division, Lawrence Berkeley National Laboratory, 1 Cyclotron Road, Berkeley, California 94720, United States
| | - Jos Oomens
- ∥Radboud University, Institute for Molecules and Materials, FELIX Laboratory, Toernooiveld 7c, 6525ED Nijmegen, The Netherlands
| | - Giel Berden
- ∥Radboud University, Institute for Molecules and Materials, FELIX Laboratory, Toernooiveld 7c, 6525ED Nijmegen, The Netherlands
| | - Michael J van Stipdonk
- †Department of Chemistry and Biochemistry, Duquesne University, Pittsburgh, Pennsylvania 15282, United States
| | - Victor N Nemykin
- ‡Department of Chemistry and Biochemistry, University of Minnesota-Duluth, Duluth, Minnesota 55812, United States
| | - Partha Basu
- †Department of Chemistry and Biochemistry, Duquesne University, Pittsburgh, Pennsylvania 15282, United States
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Sparacino-Watkins C, Stolz JF, Basu P. Nitrate and periplasmic nitrate reductases. Chem Soc Rev 2014; 43:676-706. [PMID: 24141308 DOI: 10.1039/c3cs60249d] [Citation(s) in RCA: 189] [Impact Index Per Article: 18.9] [Reference Citation Analysis] [Abstract] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Indexed: 12/19/2022]
Abstract
The nitrate anion is a simple, abundant and relatively stable species, yet plays a significant role in global cycling of nitrogen, global climate change, and human health. Although it has been known for quite some time that nitrate is an important species environmentally, recent studies have identified potential medical applications. In this respect the nitrate anion remains an enigmatic species that promises to offer exciting science in years to come. Many bacteria readily reduce nitrate to nitrite via nitrate reductases. Classified into three distinct types--periplasmic nitrate reductase (Nap), respiratory nitrate reductase (Nar) and assimilatory nitrate reductase (Nas), they are defined by their cellular location, operon organization and active site structure. Of these, Nap proteins are the focus of this review. Despite similarities in the catalytic and spectroscopic properties Nap from different Proteobacteria are phylogenetically distinct. This review has two major sections: in the first section, nitrate in the nitrogen cycle and human health, taxonomy of nitrate reductases, assimilatory and dissimilatory nitrate reduction, cellular locations of nitrate reductases, structural and redox chemistry are discussed. The second section focuses on the features of periplasmic nitrate reductase where the catalytic subunit of the Nap and its kinetic properties, auxiliary Nap proteins, operon structure and phylogenetic relationships are discussed.
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Affiliation(s)
- Russ Hille
- Department of Biochemistry, University of California, Riverside, Riverside, California 92521, United States
| | - James Hall
- Department of Biochemistry, University of California, Riverside, Riverside, California 92521, United States
| | - Partha Basu
- Department of Chemistry and Biochemistry, Duquesne University, Pittsburgh, Pennsylvania 15282, United States
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Leppin J, Förster C, Heinze K. Ligand Dynamics of tert-Butyl Isocyanide Oxido Complexes of Molybdenum(IV). Inorg Chem 2014; 53:1039-47. [DOI: 10.1021/ic4025102] [Citation(s) in RCA: 11] [Impact Index Per Article: 1.1] [Reference Citation Analysis] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Indexed: 12/27/2022]
Affiliation(s)
- Jana Leppin
- Institute
of Inorganic Chemistry and Analytical Chemistry, Johannes Gutenberg-University of Mainz, Duesbergweg 10−14, 55128 Mainz, Germany
| | - Christoph Förster
- Institute
of Inorganic Chemistry and Analytical Chemistry, Johannes Gutenberg-University of Mainz, Duesbergweg 10−14, 55128 Mainz, Germany
| | - Katja Heinze
- Institute
of Inorganic Chemistry and Analytical Chemistry, Johannes Gutenberg-University of Mainz, Duesbergweg 10−14, 55128 Mainz, Germany
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12
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Basu P, Kail BW, Adams AK, Nemykin VN. Quantitation of the ligand effect in oxo-transfer reactions of dioxo-Mo(VI) trispyrazolyl borate complexes. Dalton Trans 2012; 42:3071-81. [PMID: 23212540 DOI: 10.1039/c2dt32349d] [Citation(s) in RCA: 19] [Impact Index Per Article: 1.6] [Reference Citation Analysis] [Abstract] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Indexed: 11/21/2022]
Abstract
The oxygen atom transfer reactivity (OAT) of dioxo-Mo(VI) complexes of hydrotrispyrazolyl borate (hydrotris(3,5-dimethylpyrazolyl)borate, Tp(Me2); hydrotris(3-isopropylpyrazol-1-yl)borate, Tp(iPr)) with tertiary phosphines (PMe(3), PMe(2)Ph, PEt(3), PEt(2)Ph, PBu(n)(3), PMePh(2), or PEtPh(2)) has been investigated. In acetonitrile, these reactions proceed via the formation of a phosphoryl intermediate complex that undergoes a solvolysis reaction. We report the synthesis and characterization of several phosphoryl complexes. The rates of formation of phosphoryl complexes and their solvation were determined by spectrophotometry. The rates of the reactions and the properties of the phosphoryl species were investigated using the Quantitative Analysis of Ligand Effect (QALE) methodology. The results show that, at least in this system, the first step of the reaction is controlled primarily by the steric factor, and in the second step, both electronic and steric factors are important. We also analyzed the effect of ligands on the reaction rate i.e., Tp(Me2)vs. Tp(iPr).
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Affiliation(s)
- Partha Basu
- Department of Chemistry and Biochemistry, Duquesne University, Pittsburgh, PA 15228, USA.
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13
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Bagherzadeh M, Ghazali-Esfahani S. Efficient recyclable catalytic system for deoxygenation of sulfoxides: catalysis of ionic liquid-molybdenum complexes in ionic liquid solution. NEW J CHEM 2012. [DOI: 10.1039/c2nj21001k] [Citation(s) in RCA: 17] [Impact Index Per Article: 1.4] [Reference Citation Analysis] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Indexed: 11/21/2022]
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14
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Kitanovski N, Golobič A, Čeh B. Synthesis and crystal structure of novel mononuclear Mo(IV) and Mo(III) complexes containing bis(3,5-dimethylpyrazol-1-yl)acetate anion as ligand. INORG CHEM COMMUN 2011. [DOI: 10.1016/j.inoche.2011.01.002] [Citation(s) in RCA: 2] [Impact Index Per Article: 0.2] [Reference Citation Analysis] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Indexed: 11/17/2022]
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15
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Hadt RG, Nemykin VN, Olsen JG, Basu P. Comparative calculation of EPR spectral parameters in [Mo(V)OX4]-, [Mo(V)OX5]2-, and [Mo(V)OX4(H2O)]- complexes. Phys Chem Chem Phys 2009; 11:10377-84. [PMID: 19890522 PMCID: PMC2879133 DOI: 10.1039/b905554a] [Citation(s) in RCA: 15] [Impact Index Per Article: 1.0] [Reference Citation Analysis] [Abstract] [MESH Headings] [Grants] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Indexed: 11/21/2022]
Abstract
The EPR spectral parameters, i.e. g-tensors and molybdenum hyperfine couplings, for several d(1) systems of the general formula [Mo(V)EX(4)](n-), [Mo(V)OX(5)](2-), and [Mo(V)OX(4)(H(2)O)](-) (E = O, N; X = F, Cl, Br; n = 1 or 2) were calculated using Density Functional Theory. The influence of basis sets, their contraction scheme, the type of exchange-correlation functional, the amount of Hartree-Fock exchange, molecular geometry, and relativistic effects on the calculated EPR spectra parameters have been discussed. The g-tensors and molybdenum hyperfine coupling parameters were calculated using a relativistic Hamiltonian coupled with several LDA, GGA, and 'hybrid' exchange-correlation functionals and uncontracted full-electron DGauss DZVP basis sets. The calculated EPR parameters are found to be sensitive to the Mo=E distance and E=Mo-Cl angle, and thus the choice of starting molecular geometry should be considered as an important factor in predicting the g-tensors and hyperfine coupling constants in oxo-molybdenum compounds. In the present case, the GGA exchange-correlation functionals provide a better agreement between the theory and the experiment.
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Affiliation(s)
- Ryan G. Hadt
- Department of Chemistry and Biochemistry, University of Minnesota Duluth, Duluth, MN 55812, USA.
| | - Victor N. Nemykin
- Department of Chemistry and Biochemistry, University of Minnesota Duluth, Duluth, MN 55812, USA.
| | - Joseph G. Olsen
- Department of Chemistry and Biochemistry, University of Minnesota Duluth, Duluth, MN 55812, USA.
| | - Partha Basu
- Department of Chemistry and Biochemistry, Duquesne University, 600 Forbes Avenue, Pittsburgh, Pennsylvania 15282, USA.
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Richey C, Chovanec P, Hoeft SE, Oremland RS, Basu P, Stolz JF. Respiratory arsenate reductase as a bidirectional enzyme. Biochem Biophys Res Commun 2009; 382:298-302. [DOI: 10.1016/j.bbrc.2009.03.045] [Citation(s) in RCA: 84] [Impact Index Per Article: 5.6] [Reference Citation Analysis] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Received: 02/20/2009] [Accepted: 03/04/2009] [Indexed: 11/30/2022]
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Experimental and theoretical study of a truly functional biomimetic molybdenum oxotransferase analogue system. J Inorg Biochem 2008; 102:1199-211. [DOI: 10.1016/j.jinorgbio.2008.01.029] [Citation(s) in RCA: 29] [Impact Index Per Article: 1.8] [Reference Citation Analysis] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Received: 08/09/2007] [Revised: 01/17/2008] [Accepted: 01/18/2008] [Indexed: 11/19/2022]
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Tran BL, Carrano CJ. Oxo−Molybdenum(VI,V,IV) Complexes of the Facially Coordinating Tris(mercaptoimidazolyl)borate Ligand: Synthesis, Characterization, and Oxygen Atom Transfer Reactivity. Inorg Chem 2007; 46:5429-38. [PMID: 17521186 DOI: 10.1021/ic7005259] [Citation(s) in RCA: 28] [Impact Index Per Article: 1.6] [Reference Citation Analysis] [Abstract] [MESH Headings] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Indexed: 12/29/2022]
Abstract
A series of monooxo-Mo(IV,V) and dioxo-Mo(VI) complexes of the "soft" tripodal ligand, sodium tris(mercaptoimidazolyl)borate (NaTm(Me)), have been synthesized as potential oxygen atom transfer (OAT) models for sulfite oxidase. Complexes have been characterized by X-ray crystallography, cyclic voltammetry, and EPR, where appropriate. Oxygen atom transfer kinetics of Tm(Me)MoO(2)Cl, both stoichiometric and catalytic, have been studied by a combination of UV-vis and (31)P NMR spectroscopies under a variety of conditions. OAT rates are consistent with previously established relationships between redox potential/reactivity and mechanistic studies. The analysis of these complexes as potential structural and functional analogues of relevance to molybdoenzymes is further discussed.
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Affiliation(s)
- Ba L Tran
- Department of Chemistry and Biochemistry, San Diego State University, San Diego, California 92182-1030, USA
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Tran BL, Carrano CJ. Synthesis and characterization of heteroscorpionate dioxo-tungsten(VI) complexes. Inorganica Chim Acta 2007. [DOI: 10.1016/j.ica.2006.10.024] [Citation(s) in RCA: 9] [Impact Index Per Article: 0.5] [Reference Citation Analysis] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Indexed: 11/16/2022]
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Gennari M, Tegoni M, Lanfranchi M, Pellinghelli MA, Marchio L. A New Chiral N,N‘,O-Donor Heteroscorpionate Ligand. Structures of Ni2+, Cu2+, Zn2+ Complexes and Study of Solution Equilibria by Means of 1H NMR/UV−Vis Titrations and EXSY NMR Spectroscopy. Inorg Chem 2007; 46:3367-77. [PMID: 17367129 DOI: 10.1021/ic062228e] [Citation(s) in RCA: 24] [Impact Index Per Article: 1.4] [Reference Citation Analysis] [Abstract] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Indexed: 11/28/2022]
Abstract
The N,N',O-heteroscorpionate ligand 1-(4-methoxy-3,5-dimethyl-pyridin-2-yl)-2-methyl-1-pyrazol-1-yl-propan-2-ol (LOH) was prepared in two high-yield steps. Complexes [M(LOH)2][MCl4] (M2+ = Cu2+ and Zn2+) and [M(LOH)2]Cl2 (M2+ = Ni2+ and Cu2+) were prepared and characterized by X-ray crystallography. The speciation in solution (methanol:water 95:5) of the M2+/LOH systems was investigated by means of spectrophotometric (Ni2+ and Cu2+) and 1H NMR (Zn2+) titrations. The beta1 and beta2 global formation constants for the [M(LOH)]2+ and [M(LOH)2]2+ species were obtained and are in agreement with the Irving-Williams series: Ni2+< Cu2+> Zn2+. The Zn2+/LOH system was studied by means of quantitative 1H-1H EXSY spectroscopy (300 K, mixing time = 0.2-0.8 s), which allows the description of the equilibria occurring between five octahedral [Zn(LOH)2]2+ structural isomers and tetrahedral [Zn(LOH)Cl]Cl species. Exchange constants kijex and associated rate constants kij suggest that two types of interconversion occur: octahedral-octahedral (faster) and octahedral-tetrahedral (slower). DFT calculations (B3LYP/6-311+G(d)) were employed to evaluate the relative stability of the [Zn(LOH)2]2+ isomers, which are comparable for the five complexes with a maximum energy difference of 6.3 kJ/mol.
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Affiliation(s)
- Marcello Gennari
- Dipartimento di Chimica Generale ed Inorganica, Chimica Analitica, Chimica Fisica, UniversitA degli Studi di Parma, via Usberti 17/a, I 43100 Parma, Italy
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Manivannan V, Hoffman JT, Dimayuga VL, Dwight T, Carrano CJ. A comparison of vanadyl acetylacetonate complexes of N2O heteroscorpionate ligands that vary systematically in donor set. Inorganica Chim Acta 2007. [DOI: 10.1016/j.ica.2006.07.089] [Citation(s) in RCA: 11] [Impact Index Per Article: 0.6] [Reference Citation Analysis] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Indexed: 10/24/2022]
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22
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Kail BW, Basu P. Solvent effects in the geometric reorganization of an oxo-molybdenum(v) system. Dalton Trans 2006:1419-23. [PMID: 16518511 DOI: 10.1039/b508543h] [Citation(s) in RCA: 6] [Impact Index Per Article: 0.3] [Reference Citation Analysis] [Abstract] [MESH Headings] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Indexed: 11/21/2022]
Abstract
We have previously postulated a serine gated electron transfer hypothesis (Inorg. Chem, 2002, 41, 1281-1291) to possibly be involved in gating electron transfer between the Mo(V) and Mo(IV) states. In this study we explored the effect of solvent dielectric upon the rate and mechanism of isomerization of an oxo-Mo(V) core in attempt to understand the effect of solvent polarity to the isomerization reaction. To this end, the data suggests that there may be significant entropic contributions to the reorganization of metal center as a function of the local dielectric constant. Furthermore, we note that there is a change in the observed rate as well as the mechanism of the geometric rearrangement when it is examined in polar and non-polar environments. More specifically, in low dielectric media, the reaction proceeds either via a fast dissociation which is then followed by a twist mechanism or by a dissociation that is synchronized with the twist mechanism.
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Affiliation(s)
- Brian W Kail
- Department of Chemistry and Biochemistry, Duquesne University, Pittsburgh, PA 15282, USA
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23
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Hoffman JT, Tran BL, Carrano CJ. Oxidation-state and metal-ion dependent stereoisomerization in oxo molybdenum and tungsten complexes of a bulky alkoxy heteroscorpionate ligand. Dalton Trans 2006:3822-30. [PMID: 16883409 DOI: 10.1039/b604751c] [Citation(s) in RCA: 18] [Impact Index Per Article: 1.0] [Reference Citation Analysis] [Abstract] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Indexed: 11/21/2022]
Abstract
Monooxo Mo(V) complexes of a N2O heteroscorpionate ligand designated (L10O) are found to exist as isolable cis and trans isomers. We have been able to trap the kinetically labile cis isomer and follow its isomerization to the thermodynamically more stable trans form. We have also followed the kinetics of isomerization between the cis and trans isomers of the corresponding dioxo Mo(VI) and W(VI) species. Here the trans is the labile isomer that spontaneously converts to the thermodynamically more stable cis. It is observed that at 60 degrees C in DMSO the Mo(VI) complex isomerizes approximately 6.5 times faster than the Mo(V) and nearly 5 times faster than the corresponding W(VI) analogs. The temperature dependence to the kinetics of the Mo(V) and Mo(VI) isomerizations give activation parameters that are similar for both oxidation states and consistent with those previously observed in [(L1O)MoOCl2] suggesting a similar twist mechanism is operating in all cases. Thus there are oxidation state, metal ion and donor atom dependent differences in isomeric stability that could have significant implications for understanding the mechanisms of both enzymatic and nonenzymatic oxo atom transfer reactions catalyzed by complexes of Mo, W and Re.
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Affiliation(s)
- Justin T Hoffman
- Department of Chemistry and Biochemistry, San Diego State University, San Diego, CA 82182-1030, USA
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Hoffman JT, Einwaechter S, Chohan BS, Basu P, Carrano CJ. Isomerization and Oxygen Atom Transfer Reactivity in Oxo−Mo Complexes of Relevance to Molybdoenzymes. Inorg Chem 2004; 43:7573-5. [PMID: 15554616 DOI: 10.1021/ic048775m] [Citation(s) in RCA: 35] [Impact Index Per Article: 1.8] [Reference Citation Analysis] [Abstract] [MESH Headings] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Indexed: 11/28/2022]
Abstract
Both dioxo Mo(VI) and mono-oxo Mo(V) complexes of a sterically restrictive N2O heteroscorpionate ligand are found to exist as cis and trans isomers. The thermodynamically stable isomer differs for the two oxidation states, but in each case, we have isolated the kinetically labile isomer and followed its isomerization to the thermodynamically stable form. The Mo(VI) complex is more stable in the cis geometry and isomerizes more than 6 times faster than the Mo(V) complex, which prefers the trans geometry. In OAT reactions with PPh3, the trans isomer of the dioxo-Mo(VI) reacts approximately 20 times faster than the cis isomer. Thus, there are both oxidation state and donor atom dependent differences in isomeric stability and reactivity that could have significant functional implications for molybdoenzymes such as DMSO reductase.
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Affiliation(s)
- Justin T Hoffman
- Department of Chemistry, San Diego State University, San Diego, California 92182-1030, USA
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25
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Hammes BS, Chohan BS, Hoffman JT, Einwächter S, Carrano CJ. A Family of Dioxo−Molybdenum(VI) Complexes of N2X Heteroscorpionate Ligands of Relevance to Molybdoenzymes. Inorg Chem 2004; 43:7800-6. [PMID: 15554645 DOI: 10.1021/ic049130p] [Citation(s) in RCA: 52] [Impact Index Per Article: 2.6] [Reference Citation Analysis] [Abstract] [MESH Headings] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Indexed: 11/30/2022]
Abstract
Four new Mo(VI)-dioxo complexes of a family of N2X heteroscorpionate ligands are reported which, together with data already available for (TpR)-, provide a unique example of a comprehensive set of isostructural, isoelectronic complexes differing only in one biologically relevant donor atom. A study of these complexes allows for a direct comparison of structural, spectroscopic, and oxygen atom transfer reactivity properties of the Mo(VI)-dioxo center (of relevance to various families of molybdoenzymes) as a function of donor atom identity.
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Affiliation(s)
- Brian S Hammes
- Department of Chemistry and Biochemistry, San Diego State University, San Diego, California 92182-1030, USA
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Otero A, Fernández-Baeza J, Antiñolo A, Tejeda J, Lara-Sánchez A. Heteroscorpionate ligands based on bis(pyrazol-1-yl)methane: design and coordination chemistry. Dalton Trans 2004:1499-510. [PMID: 15252594 DOI: 10.1039/b401425a] [Citation(s) in RCA: 204] [Impact Index Per Article: 10.2] [Reference Citation Analysis] [Abstract] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Indexed: 11/21/2022]
Abstract
Scorpionates represent one of the most versatile types of tridentate ligand that can coordinate to a wide variety of elements, e.g. from early to late transition metals, and the coordination chemistry of these systems has developed greatly in recent years. This Perspective gives an account of studies on the following aspects: (1) the preparative methods for a new class of heteroscorpionate [RR'C(pz)2] ligand derived from bis(pyrazol-1-yl)methane and (2) the description of metal complexes containing these ligands, examples of which incorporate a range of different metals from the Periodic Table.
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Affiliation(s)
- A Otero
- Departamento de Quimica Inorganica, Organica y Bioquimica, Universidad de Castilla-La Mancha, 13071-Ciudad Real, Spain.
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27
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Basu P, Nemykin VN, Sengar RS. Syntheses, Spectroscopy, and Redox Chemistry of Encapsulated Oxo−Mo(V) Centers: Implications for Pyranopterin-Containing Molybdoenzymes. Inorg Chem 2003; 42:7489-501. [PMID: 14606844 DOI: 10.1021/ic034821r] [Citation(s) in RCA: 37] [Impact Index Per Article: 1.8] [Reference Citation Analysis] [Abstract] [MESH Headings] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Indexed: 11/30/2022]
Abstract
Coordination by at least four sulfur donors to an embedded molybdenum center has been found to be a common feature in the crystal structures of many mononuclear molybdenum enzymes. In an effort to model embedded molybdenum centers, we have synthesized dendritic thiolate ligands and their oxo-molybdenum complexes containing a [Mo(V)OS(4)](-) core. These compounds have been isolated in pure form as blue solids or gummy materials, and the molecular nature of these compounds has been confirmed by electrospray ionization mass spectrometry and infrared, electron paramagnetic resonance, and UV-vis spectroscopies. The dendritic complexes exhibit little variation in their broad S --> Mo charge transfer band (lambda(max) approximately 600 nm; epsilon approximately 6000 M(-)(1) cm(-)(1)), Mo=O vibration energy (941-943 cm(-)(1)), and EPR g-values (g( parallel ) approximately 2.02; g( perpendicular ) approximately 1.98; g(av) approximately 1.99). The spectroscopic data confirm the integrity of the square pyramidal [Mo(V)OS(4)](-) core with little geometric distortions, suggesting that the electronic structure at the metal center is not perturbed by the ligand architecture. The electronic structure of these complexes, calculated by the density functional theory, demonstrates a similar composition of the HOMO. In complexes 6 and 7a, the energy of the HOMO orbital might be modulated by the difference in the electronic structure of the ligands. The Mo(V/IV) reduction potentials vary as a function of the dielectric constant and the donor number of the solvent. The kinetics of the reduction is influenced by the reorganization of the geometry and the encapsulating effect. We suggest that protein structure imposed microenvironments may control the dielectric properties and hence the redox properties of the metal center in many metallobiomolecules.
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Affiliation(s)
- Partha Basu
- Department of Chemistry and Biochemistry, Duquesne University, Pittsburgh, Pennsylvania 15282, USA.
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Carrano CJ, Chohan BS, Hammes BS, Kail BW, Nemykin VN, Basu P. Donor atom dependent geometric isomers in mononuclear oxo-molybdenum(V) complexes: implications for coordinated endogenous ligation in molybdoenzymes. Inorg Chem 2003; 42:5999-6007. [PMID: 12971770 DOI: 10.1021/ic0262785] [Citation(s) in RCA: 27] [Impact Index Per Article: 1.3] [Reference Citation Analysis] [Abstract] [MESH Headings] [Grants] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Indexed: 11/29/2022]
Abstract
We have previously demonstrated that the complex [(L1O)MoOCl(2)], where L1OH = (2-hydroxy-3-tert-butyl-5-methylphenyl)bis(3,5-dimethylpyrazolyl)methane, exists as both cis and trans isomers (Kail, B.; Nemykin, V. N.; Davie, S. R.; Carrano, C. J.; Hammes, B. S.; Basu, P. Inorg. Chem. 2002, 41, 1281-1291). Here, the cis isomer is defined as the geometry with the heteroatom in the equatorial position, and the trans isomer is designated as the geometry with the heteroatom positioned trans to the terminal oxo group. The trans isomer represents the thermodynamically more stable geometry as indicated by its spontaneous formation from the cis isomer. In this report, we show that for complexes of [(LO)MoOCl(2)], where LOH is the sterically less restrictive (2-hydroxyphenyl)bis(3,5-dimethylpyrazolyl)methane, only the trans isomer could be isolated, while in the corresponding thiolate containing ligand (2-dimethylethanethiol)bis(3,5-dimethylpyrazolyl)methane (L3SH) only the cis isomer could be observed. In addition, we have isolated and structurally characterized the complex [(L1O)MoO(OPh)(Cl)], a rare example of a species possessing both cis and trans phenolates. Using DFT calculations, we have investigated the origins of the differences in stability between the cis and trans isomers in these complexes and suggest that they are related to the trans influence of the oxo-group. Crystal data for [(LO)MoOCl(2)] (1) include that it crystallizes in the triclinic space group P(-)1 with cell dimensions a = 8.9607 (12) A, b = 10.596 (4) A, c = 13.2998 (13) A, alpha = 98.03 (2) degrees, beta = 103.21 (2) degrees, gamma = 110.05(2) degrees, and Z = 2. [(L1O)MoO(OPh)Cl].2CH(2)Cl(2) (2.2CH(2)Cl(2)) crystallizes in the triclinic space group P(-)1 with cell dimensions a = 12.2740 (5) A, b = 13.0403 (5) A, c = 13.6141 (6) A, alpha = 65.799 (2) degrees, beta = 64.487 (2) degrees, gamma = 65.750 (2) degrees, and Z = 2. [(L3S)Mo(O)Cl(2)] (3) crystallizes in the orthorhombic space group Pna2(1), with cell dimensions a = 13.2213 (13) A, b = 8.817 (2) A, c = 15.649 (4) A, and Z = 4. The implications of these results on the function of mononuclear molybdoenzymes such as sulfite oxidase, and the DMSO reductase, are discussed.
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Affiliation(s)
- Carl J Carrano
- Department of Chemistry and Biochemistry, Southwest Texas State University, San Marcos, TX 78666, USA
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29
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Nemykin VN, Basu P. Comparative theoretical investigation of the vertical excitation energies and the electronic structure of [MoVOCl4]-: influence of basis set and geometry. Inorg Chem 2003; 42:4046-56. [PMID: 12817960 DOI: 10.1021/ic0262942] [Citation(s) in RCA: 44] [Impact Index Per Article: 2.1] [Reference Citation Analysis] [Abstract] [MESH Headings] [Grants] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Indexed: 11/30/2022]
Abstract
The electronic structures, geometries, and vibration frequencies of the open-shell molybdenum(V) ion, [MoOCl(4)](-), have been calculated at the extended Hückel, semiempirical ZINDO/1, ZINDO/S, and PM3(tm), as well as ab initio and DFT theoretical levels. Electronic structure calculations suggest that the expected metal-fold orbital order can be satisfied only at the DFT level. The time-dependent density functional theory (TDDFT) approach has been used for the calculation of the vertical excitation energies in the UV-vis region with different basis sets, starting geometries, and exchange-correlation functionals. A good agreement between the predicted and the experimental electronic absorption and MCD spectra of the complex, [MoOCl(4)](-), was observed when the B3LYP and B3P86 exchange-correlation functionals were used with a full electron valence double-zeta with polarization basis set for the molybdenum and 6-311G(d) for all other atoms. Similar results were obtained when the LANL2DZ effective core potential for molybdenum atom and 6-31G(d) for all other atoms were used. The best absolute deviation of 0.13 and mean deviation of 0.01 eV were calculated for the bands in the UV-vis region by B3P86, while the results for the B3LYP exchange-correlation functional were less satisfactory. Compared to polarization functions, the inclusion of diffuse functions resulted in little improvement. The calculated excitations energies and charge-transfer band intensities are found to be sensitive to the Mo=O distance and O-Mo-Cl angle.
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Affiliation(s)
- Victor N Nemykin
- Department of Chemistry and Biochemistry, Duquesne University, 600 Forbes Avenue, Pittsburgh, Pennsylvania 15282, USA
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30
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Atom transfer chemistry and electrochemical behavior of Mo(VI) and Mo(V) trispyrazolylborate complexes: new mononuclear and dinuclear species. Inorganica Chim Acta 2002. [DOI: 10.1016/s0020-1693(02)01105-2] [Citation(s) in RCA: 31] [Impact Index Per Article: 1.4] [Reference Citation Analysis] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Indexed: 11/21/2022]
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