1
|
Zhu Y, Li Z, Zhong X, Wu X, Lu Y, Khan MA, Li H. Coordination Patterns of the Diphosphate in IDP Coordination Complexes: Crystal Structure and Chirality. Inorg Chem 2022; 61:19425-19439. [DOI: 10.1021/acs.inorgchem.2c03285] [Citation(s) in RCA: 0] [Impact Index Per Article: 0] [Reference Citation Analysis] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Indexed: 11/24/2022]
Affiliation(s)
- Yanhong Zhu
- Key Laboratory of Cluster Science of Ministry of Education, School of Chemistry and Chemical Engineering, Beijing Institute of Technology, Beijing 100081, P. R. China
- School of Pharmacy, North China University of Science and Technology, Tangshan, Hebei 063210, China
| | - Zhongkui Li
- Key Laboratory of Cluster Science of Ministry of Education, School of Chemistry and Chemical Engineering, Beijing Institute of Technology, Beijing 100081, P. R. China
| | - Xue Zhong
- Key Laboratory of Cluster Science of Ministry of Education, School of Chemistry and Chemical Engineering, Beijing Institute of Technology, Beijing 100081, P. R. China
| | - Xuan Wu
- Key Laboratory of Cluster Science of Ministry of Education, School of Chemistry and Chemical Engineering, Beijing Institute of Technology, Beijing 100081, P. R. China
| | - Yongqiu Lu
- Key Laboratory of Cluster Science of Ministry of Education, School of Chemistry and Chemical Engineering, Beijing Institute of Technology, Beijing 100081, P. R. China
| | - Maroof Ahmad Khan
- Key Laboratory of Cluster Science of Ministry of Education, School of Chemistry and Chemical Engineering, Beijing Institute of Technology, Beijing 100081, P. R. China
| | - Hui Li
- Key Laboratory of Cluster Science of Ministry of Education, School of Chemistry and Chemical Engineering, Beijing Institute of Technology, Beijing 100081, P. R. China
| |
Collapse
|
2
|
Villalpando M, Saavedra-Molina A, Rosas G. A facile synthesis of silver nanowires and their evaluation in the mitochondrial membrane potential. MATERIALS SCIENCE & ENGINEERING. C, MATERIALS FOR BIOLOGICAL APPLICATIONS 2020; 114:110973. [PMID: 32994023 DOI: 10.1016/j.msec.2020.110973] [Citation(s) in RCA: 6] [Impact Index Per Article: 1.5] [Reference Citation Analysis] [Abstract] [Key Words] [Track Full Text] [Subscribe] [Scholar Register] [Received: 10/10/2019] [Revised: 04/13/2020] [Accepted: 04/15/2020] [Indexed: 12/29/2022]
Abstract
Silver nanowires (AgNWs) with a high-aspect-ratio were successfully synthesized by a green method using Lavandula angustifolia plant extract. The morphology of the AgNWs was evaluated as a function of the concentration of precursor salt and nucleating agent. Furthermore, AgNWs were analyzed in a biological model using rat liver mitochondria by measuring their effect on membrane potential. The scanning electron microscopy (SEM), X-ray diffraction (XRD), and transmission electron microscopy (TEM) techniques structurally characterized the nanowires obtained. Also, ultraviolet-visible spectroscopy (UV-Vis) investigated the optical properties of AgNWs. Structural studies show AgNWs fcc with lengths up to 100 μm and diameters ranging from 60 to 130 nm growing in the [110] orientation. Both the CuSO4 nucleating agent and the centrifugation process are essential for the growth of nanowires. Furthermore, inhibition of mitochondrial membrane potential (MMP) depends on the concentration of the nanowires (NWs), suggesting dissipation of the electron transport chain. In this way, AgNWs can be used as a potential tool to verify biological reactions, such as modulation of metabolic pathways, together with the evaluation of a possible influence of biotic or abiotic factors in organisms.
Collapse
Affiliation(s)
- M Villalpando
- Instituto de Investigaciones en Metalurgia y Materiales, UMSNH, edificio U., Ciudad Universitaria, C.P. 58000 Morelia, Michoacán, Mexico.
| | - Alfredo Saavedra-Molina
- Instituto de Investigaciones Químico Biológicas, UMSNH, edificio B-3, Ciudad Universitaria, C.P. 58000 Morelia, Michoacán, Mexico.
| | - G Rosas
- Instituto de Investigaciones en Metalurgia y Materiales, UMSNH, edificio U., Ciudad Universitaria, C.P. 58000 Morelia, Michoacán, Mexico.
| |
Collapse
|
3
|
Delineating factors that dictate the framework of a bulky phosphate derived metal complexes: Sterics of phosphate, anion of the metal salt and auxiliary N-donor ligand. Inorganica Chim Acta 2018. [DOI: 10.1016/j.ica.2017.08.033] [Citation(s) in RCA: 7] [Impact Index Per Article: 1.2] [Reference Citation Analysis] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Indexed: 11/19/2022]
|
4
|
Rhaman MM, Powell DR, Hossain MA. Supramolecular Assembly of Uridine Monophosphate (UMP) and Thymidine Monophosphate (TMP) with a Dinuclear Copper(II) Receptor. ACS OMEGA 2017; 2:7803-7811. [PMID: 29214233 PMCID: PMC5709781 DOI: 10.1021/acsomega.7b01293] [Citation(s) in RCA: 7] [Impact Index Per Article: 1.0] [Reference Citation Analysis] [Abstract] [Grants] [Track Full Text] [Subscribe] [Scholar Register] [Received: 09/03/2017] [Accepted: 10/31/2017] [Indexed: 05/14/2023]
Abstract
Understanding the intermolecular interactions between nucleotides and artificial receptors is crucial to understanding the role of nucleic acids in living systems. However, direct structural evidence showing precise interactions and bonding features of a nucleoside monophosphate (NMP) with a macrocycle-based synthetic molecule has not been provided so far. Herein, we present two novel crystal structures of uridine monophosphate (UMP) and thymidine monophosphate (TMP) complexes with a macrocycle-based dinuclear receptor. Structural characterization of these complexes reveals that the receptor recognizes UMP through coordinate-covalent interactions with phosphates and π-π stackings with nucleobases and TMP through coordinate-covalent interactions with phosphate groups. Furthermore, the receptor has been shown to effectively bind nucleoside monophosphates in the order of GMP > AMP > UMP > TMP > CMP in water at physiological pH, as investigated by an indicator displacement assay.
Collapse
Affiliation(s)
- Md Mhahabubur Rhaman
- Department
of Chemistry and Biochemistry, Jackson State
University, Jackson, Mississippi 39217, United States
| | - Douglas R. Powell
- Department
of Chemistry and Biochemistry, University
of Oklahoma, Norman, Oklahoma 73019, United
States
| | - Md. Alamgir Hossain
- Department
of Chemistry and Biochemistry, Jackson State
University, Jackson, Mississippi 39217, United States
- E-mail:
| |
Collapse
|
5
|
Tabassum S, Afzal M, Al–Lohedan H, Zaki M, Khan RA, Ahmad M. Synthesis and structure elucidation of new open cubane tetranuclear [Cu II 4 ] Cluster: Evaluation of the DNA/HSA interaction and pBR322 DNA cleavage pathway and cytotoxicity. Inorganica Chim Acta 2017. [DOI: 10.1016/j.ica.2017.04.031] [Citation(s) in RCA: 7] [Impact Index Per Article: 1.0] [Reference Citation Analysis] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Indexed: 10/19/2022]
|
6
|
Zhou P, Shi R, Yao JF, Sheng CF, Li H. Supramolecular self-assembly of nucleotide–metal coordination complexes: From simple molecules to nanomaterials. Coord Chem Rev 2015. [DOI: 10.1016/j.ccr.2015.02.007] [Citation(s) in RCA: 74] [Impact Index Per Article: 8.2] [Reference Citation Analysis] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Indexed: 11/30/2022]
|
7
|
Hazra S, Mukherjee S, Guedes da Silva MFC, Pombeiro AJL. A cyclic tetranuclear cuboid type copper(ii) complex doubly supported by cyclohexane-1,4-dicarboxylate: molecular and supramolecular structure and cyclohexane oxidation activity. RSC Adv 2014. [DOI: 10.1039/c4ra06986b] [Citation(s) in RCA: 25] [Impact Index Per Article: 2.5] [Reference Citation Analysis] [Abstract] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Indexed: 11/21/2022] Open
Abstract
A rare isolated tetranuclear 3d complex with a single metal CDC cuboid cage. It catalyzes cyclohexane peroxidative oxidation without any promoter.
Collapse
Affiliation(s)
- Susanta Hazra
- Centro de Química Estrutural
- Instituto Superior Técnico
- Universidade de Lisboa
- Lisboa, Portugal
| | - Sanghamitra Mukherjee
- Centro de Química Estrutural
- Instituto Superior Técnico
- Universidade de Lisboa
- Lisboa, Portugal
| | | | - Armando J. L. Pombeiro
- Centro de Química Estrutural
- Instituto Superior Técnico
- Universidade de Lisboa
- Lisboa, Portugal
| |
Collapse
|
8
|
Novel tetranuclear distorted open-cubane copper complex containing oximate bridges: Synthesis, crystal structure, DNA binding and cleavage activity. Inorganica Chim Acta 2012. [DOI: 10.1016/j.ica.2012.03.042] [Citation(s) in RCA: 17] [Impact Index Per Article: 1.4] [Reference Citation Analysis] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Indexed: 11/19/2022]
|
9
|
Abstract
Metal ions play a key role in nucleic acid structure and activity. Elucidation of the rules that govern the binding of metal ions is therefore an essential step for better understanding of the nucleic acid functions. This review is as an update to a preceding one (Metal Ions Biol. Syst., 1996, 32, 91-134), in which we offered a general view of metal ion interactions with mono-, di-, tri-, and oligonucleotides in the solid state, based on their crystal structures reported before 1994. In this chapter, we survey all the crystal structures of metal ion complexes with nucleotides involving oligonucleotides reported after 1994 and we have tried to uncover new characteristic metal bonding patterns for mononucleotides and oligonucleotides with A-RNA and A/B/Z-DNA fragments that form duplexes. We do not cover quadruplexes, duplexes with metal-mediated base-pairs, tRNAs, rRNAs in ribosome, ribozymes, and nucleic acid-drug and -protein complexes. Factors that affect metal binding to mononucleotides and oligonucleotide duplexes are also dealt with.
Collapse
|
10
|
Dhanalakshmi T, Loganathan R, Suresh E, Stoeckli-Evans H, Palaniandavar M. Interaction of copper(II) complexes with bis(p-nitrophenyl)phosphate: Structural and spectral studies. Inorganica Chim Acta 2011. [DOI: 10.1016/j.ica.2011.02.030] [Citation(s) in RCA: 3] [Impact Index Per Article: 0.2] [Reference Citation Analysis] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Indexed: 10/18/2022]
|
11
|
Singhal NK, Mitra A, Rajsekhar G, Shaikh MM, Kumar S, Guionneau P, Rao CP. Role of the orientation of –OH groups in the sensitivity and selectivity of the interaction of M2+ with ribosyl- and galactosyl-imino-conjugates. Dalton Trans 2009:8432-42. [DOI: 10.1039/b903668g] [Citation(s) in RCA: 18] [Impact Index Per Article: 1.2] [Reference Citation Analysis] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Indexed: 11/21/2022]
|
12
|
Murugavel R, Kuppuswamy S, Maity AN, Singh MP. Di-, Tri-, Tetra-, and Hexanuclear Copper(II) Mono-organophosphates: Structure and Nuclearity Dependence on the Choice of Phosphorus Substituents and Auxiliary N-Donor Ligands. Inorg Chem 2008; 48:183-92. [DOI: 10.1021/ic801532y] [Citation(s) in RCA: 40] [Impact Index Per Article: 2.5] [Reference Citation Analysis] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Indexed: 01/30/2023]
Affiliation(s)
- Ramaswamy Murugavel
- Department of Chemistry and Centre for Research in Nanotechnology and Science, Indian Institute of Technology-Bombay, Powai, Mumbai-400076, India
| | - Subramaniam Kuppuswamy
- Department of Chemistry and Centre for Research in Nanotechnology and Science, Indian Institute of Technology-Bombay, Powai, Mumbai-400076, India
| | - Amarendra Nath Maity
- Department of Chemistry and Centre for Research in Nanotechnology and Science, Indian Institute of Technology-Bombay, Powai, Mumbai-400076, India
| | - Mayank Pratap Singh
- Department of Chemistry and Centre for Research in Nanotechnology and Science, Indian Institute of Technology-Bombay, Powai, Mumbai-400076, India
| |
Collapse
|
13
|
Murugavel R, Choudhury A, Walawalkar MG, Pothiraja R, Rao CNR. Metal Complexes of Organophosphate Esters and Open-Framework Metal Phosphates: Synthesis, Structure, Transformations, and Applications. Chem Rev 2008; 108:3549-655. [DOI: 10.1021/cr000119q] [Citation(s) in RCA: 278] [Impact Index Per Article: 17.4] [Reference Citation Analysis] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Indexed: 01/29/2023]
Affiliation(s)
- R. Murugavel
- Department of Chemistry, IIT-Bombay, Powai, Mumbai-400076, India, and Chemistry and Physics of Materials Unit, Jawaharlal Nehru Center of Advanced Scientific Research, Jakkur P.O., Bangalore-560 064, India
| | - Amitava Choudhury
- Department of Chemistry, IIT-Bombay, Powai, Mumbai-400076, India, and Chemistry and Physics of Materials Unit, Jawaharlal Nehru Center of Advanced Scientific Research, Jakkur P.O., Bangalore-560 064, India
| | - M. G. Walawalkar
- Department of Chemistry, IIT-Bombay, Powai, Mumbai-400076, India, and Chemistry and Physics of Materials Unit, Jawaharlal Nehru Center of Advanced Scientific Research, Jakkur P.O., Bangalore-560 064, India
| | - R. Pothiraja
- Department of Chemistry, IIT-Bombay, Powai, Mumbai-400076, India, and Chemistry and Physics of Materials Unit, Jawaharlal Nehru Center of Advanced Scientific Research, Jakkur P.O., Bangalore-560 064, India
| | - C. N. R. Rao
- Department of Chemistry, IIT-Bombay, Powai, Mumbai-400076, India, and Chemistry and Physics of Materials Unit, Jawaharlal Nehru Center of Advanced Scientific Research, Jakkur P.O., Bangalore-560 064, India
| |
Collapse
|
14
|
Chandrasekhar V, Azhakar R, Senapati T, Thilagar P, Ghosh S, Verma S, Boomishankar R, Steiner A, Kögerler P. Synthesis, structure, magnetism and nuclease activity of tetranuclear copper(ii) phosphonates containing ancillary 2,2′-bipyridine or 1,10-phenanthroline ligands. Dalton Trans 2008:1150-60. [DOI: 10.1039/b712876b] [Citation(s) in RCA: 56] [Impact Index Per Article: 3.5] [Reference Citation Analysis] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Indexed: 11/21/2022]
|
15
|
Lu JW, Huang YH, Lo SI, Wei HH. New μ-oxo-bridged tetranuclear Cu(II) complex with Schiff-base ligand: Synthesis, crystal structure and magnetic properties. INORG CHEM COMMUN 2007. [DOI: 10.1016/j.inoche.2007.07.009] [Citation(s) in RCA: 31] [Impact Index Per Article: 1.8] [Reference Citation Analysis] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Indexed: 10/23/2022]
|
16
|
Biological recognition patterns implicated by the formation and stability of ternary metal ion complexes of low-molecular-weight formed with amino acid/peptides and nucleobases/nucleosides. Coord Chem Rev 2007. [DOI: 10.1016/j.ccr.2007.03.006] [Citation(s) in RCA: 77] [Impact Index Per Article: 4.5] [Reference Citation Analysis] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Indexed: 11/18/2022]
|
17
|
Komeda S, Moulaei T, Woods KK, Chikuma M, Farrell NP, Williams LD. A Third Mode of DNA Binding: Phosphate Clamps by a Polynuclear Platinum Complex. J Am Chem Soc 2006; 128:16092-103. [PMID: 17165762 DOI: 10.1021/ja062851y] [Citation(s) in RCA: 142] [Impact Index Per Article: 7.9] [Reference Citation Analysis] [Abstract] [MESH Headings] [Grants] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Indexed: 11/29/2022]
Abstract
We describe a 1.2 A X-ray structure of a double-stranded B-DNA dodecamer (the Dickerson Dodecamer, DDD, [d(CGCGAATTCGCG)]2) associated with a cytotoxic platinum(II) complex, [{trans-Pt(NH3)2(NH2(CH2)6(NH3+)}2-mu-{trans-Pt(NH3)2(NH2(CH2)6NH2)2}] (TriplatinNC). TriplatinNC is a multifunctional DNA ligand, with three cationic Pt(II) centers, and directional hydrogen bonding functionalities, linked by flexible hydrophobic segments, but without the potential for covalent interaction. TriplatinNC does not intercalate nor does it bind in either groove. Instead, it binds to phosphate oxygen atoms and thus associates with the backbone. The three square-planar tetra-am(m)ine Pt(II) coordination units form bidentate N...O...N complexes with OP atoms, in a motif we call the Phosphate Clamp. The geometry is conserved among the 8 observed phosphate clamps in this structure. The interaction appears to prefer O2P over O1P atoms (frequency of interaction is O2P > O1P, base and sugar oxygens > N). The high repetition and geometric regularity of the motif suggests that this type of Pt(II) center can be developed as a modular nucleic acid binding device with general utility. TriplatinNC extends along the phosphate backbone, in a mode of binding we call "Backbone Tracking" and spans the minor groove in a mode of binding we call "Groove Spanning". Electrostatic forces appear to induce modest DNA bending into the major groove. This bending may be related to the direct coordination of a sodium cation by a DNA base, with unprecedented inner-shell (direct) coordination of penta-hydrated sodium at the O6 atom of a guanine.
Collapse
Affiliation(s)
- Seiji Komeda
- School of Chemistry and Biochemistry, Georgia Institute of Technology, Atlanta, Georgia 30332-0400, USA
| | | | | | | | | | | |
Collapse
|
18
|
Barker JE, Liu Y, Yee GT, Chen WZ, Wang G, Rivera VM, Ren T. Cu2{[18]ane-N6} Complexes: Structures, Magnetism, and Phosphate Monoester Binding. Inorg Chem 2006; 45:7973-80. [PMID: 16961393 DOI: 10.1021/ic0611140] [Citation(s) in RCA: 14] [Impact Index Per Article: 0.8] [Reference Citation Analysis] [Abstract] [MESH Headings] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Indexed: 01/24/2023]
Abstract
A novel Cu(II)2 complex of the [18]ane-N6 macrocycle ([18]ane-N6 = 1,4,7,10,13,16-hexaazacyclooctadecane) was prepared from the reaction between [18]ane-N6 and Cu(II) salts such as Cu(NO3)2 and Cu(OAc)2. A structural study of the complex derived from Cu(OAc)2 (1) revealed a Cu(II)2 core encircled by a [18]ane-N6 ligand and two mu-O-OAc ligands. The facile replacement of mu-O-OAc by a phosphate monoester [PO3(OR)2-] yielded a number of bis(phosphate monoester)dicopper complexes with ROPO3(2-) as hydrogen phosphate (HPO4(2-), 3a), phenyl phosphate [PO3(OPh)2-, 3b], glycerol 2-phosphate [PO3(OCH(CH2OH)2)2-, 3c], alpha-d-gluocose phosphate [PO3(C6H11O6)2-, 3d], and dl-alpha-glycerol phosphate [PO3(OCH2CHOHCH2OH)2-, 3e]. Structural studies of compounds 3a-d confirmed both the retention of the Cu2{[18]ane-N6} core and a mu-O-PO3(OR) coordination mode. Displacement of acetate by a phosphate monoester in an aqueous solution was accompanied by a significant change in the visible absorption, which enables the establishment of relative association constants of PO3(OR)2- on the order of 10(4) in the unbuffered solution and 10(3) in the buffered solution (HEPES). Measurement of the magnetic susceptibility of compound 3a over the temperature range of 5-300 K and subsequent modeling revealed a weak antiferromagnetic coupling (J = -1.1 cm(-1)) between two Cu(II) centers.
Collapse
Affiliation(s)
- Julia E Barker
- Department of Chemistry, University of Miami, Coral Gables, Florida 33124, USA
| | | | | | | | | | | | | |
Collapse
|
19
|
Kato M, Sah AK, Tanase T, Mikuriya M. Tetranuclear Copper(II) Complexes Bridged by α-d-Glucose-1-Phosphate and Incorporation of Sugar Acids through the Cu4 Core Structural Changes. Inorg Chem 2006; 45:6646-60. [PMID: 16903719 DOI: 10.1021/ic060202h] [Citation(s) in RCA: 33] [Impact Index Per Article: 1.8] [Reference Citation Analysis] [Abstract] [MESH Headings] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Indexed: 11/30/2022]
Abstract
Tetranuclear copper(II) complexes containing alpha-D-glucose-1-phosphate (alpha-D-Glc-1P), [Cu4(mu-OH){mu-(alpha-D-Glc-1P)}2(bpy)4(H2O)2]X3 [X = NO3 (1a), Cl (1b), Br (1c)], and [Cu4(mu-OH){mu-(alpha-D-Glc-1P)}2(phen)4(H2O)2](NO3)3 (2) were prepared by reacting the copper(II) salt with Na2[alpha-D-Glc-1P] in the presence of diimine ancillary ligands, and the structure of 2 was characterized by X-ray crystallography to comprise four {Cu(phen)}2+ fragments connected by the two sugar phosphate dianions in 1,3-O,O' and 1,1-O mu4-bridging fashion as well as a mu-hydroxo anion. The crystal structure of 2 involves two chemically independent complex cations in which the C2 enantiomeric structure for the trapezoidal tetracopper(II) framework is switched according to the orientation of the alpha-D-glucopyranosyl moieties. Temperature-dependent magnetic susceptibility data of 1a indicated that antiferromagnetic spin coupling is operative between the two metal ions joined by the hydroxo bridge (J = -52 cm(-1)) while antiferromagnetic interaction through the Cu-O-Cu sugar phosphate bridges is weak (J = -13 cm(-1)). Complex 1a readily reacted with carboxylic acids to afford the tetranuclear copper(II) complexes, [Cu4{mu-(alpha-D-Glc-1P)}2(mu-CA)2(bpy)4](NO3)2 [CA = CH3COO (3), o-C6H4(COO)(COOH) (4)]. Reactions with m-phenylenediacetic acid [m-C6H4(CH2COOH)2] also gave the discrete tetracopper(II) cationic complex [Cu4{mu-(alpha-D-Glc-1P)}2(mu-m-C6H4(CH2COO)(CH2COOH))2(bpy)4](NO3)2 (5a) as well as the cluster polymer formulated as {[Cu4{mu-(alpha-D-Glc-1P)}2(mu-m-C6H4(CH2COO)2)(bpy)4](NO3)2}n (5b). The tetracopper structure of 1a is converted into a symmetrical rectangular core in complexes 3, 4, and 5b, where the hydroxo bridge is dissociated and, instead, two carboxylate anions bridge another pair of Cu(II) ions in a 1,1-O monodentate fashion. The similar reactions were applied to incorporate sugar acids onto the tetranuclear copper(II) centers. Reactions of 1a with delta-D-gluconolactone, D-glucuronic acid, or D-glucaric acid in dimethylformamide resulted in the formation of discrete tetracopper complexes with sugar acids, [Cu4{mu-(alpha-D-Glc-1P)}2(mu-SA)2(bpy)4](NO3)2 [SA = D-gluconate (6), D-glucuronate (7), D-glucarateH (8a)]. The structures of 6 and 7 were determined by X-ray crystallography to be almost identical with that of 3 with additional chelating coordination of the C-2 hydroxyl group of D-gluconate moieties (6) or the C-5 cyclic O atom of D-glucuronate units (7). Those with D-glucaric acid and D-lactobionic acid afforded chiral one-dimensional polymers, {[Cu4{mu-(alpha-D-Glc-1P)}2(mu-D-glucarate)(bpy)4](NO3)2}n (8b) and {[Cu4{mu-(alpha-D-Glc-1P)}2(mu-D-lactobionate)(bpy)4(H2O)2](NO3)3}n (9), respectively, in which the D-Glc-1P-bridged tetracopper(II) units are connected by sugar acid moieties through the C-1 and C-6 carboxylate O atoms in 8b and the C-1 carboxylate and C-6 alkoxy O atoms of the gluconate chain in 9. When complex 7 containing d-glucuronate moieties was heated in water, the mononuclear copper(II) complex with 2-dihydroxy malonate, [Cu(mu-O2CC(OH)2CO2)(bpy)] (10), and the dicopper(II) complex with oxalate, [Cu2(mu-C2O4)(bpy)2(H2O)2](NO3)2 (11), were obtained as a result of oxidative degradation of the carbohydrates through C-C bond cleavage reactions.
Collapse
Affiliation(s)
- Merii Kato
- Department of Chemistry, Faculty of Science, Nara Women's University, Kitauoya-higashi-machi, Nara 630-8285, Japan
| | | | | | | |
Collapse
|
20
|
Kato M, Sah AK, Tanase T, Mikuriya M. Transformation of a Tetranuclear Copper(II) Complex Bridged by Sugar Phosphates into Nucleotide-Containing Cu4 Aggregations. Eur J Inorg Chem 2006. [DOI: 10.1002/ejic.200600009] [Citation(s) in RCA: 17] [Impact Index Per Article: 0.9] [Reference Citation Analysis] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Indexed: 11/09/2022]
|
21
|
Kato M, Tanase T, Mikuriya M. Dinuclear Copper(II) Complexes with {Cu2(μ-hydroxo)bis(μ-carboxylato)}+ Cores and Their Reactions with Sugar Phosphate Esters: A Substrate Binding Model of Fructose-1,6-bisphosphatase. Inorg Chem 2006; 45:2925-41. [PMID: 16562948 DOI: 10.1021/ic051942d] [Citation(s) in RCA: 31] [Impact Index Per Article: 1.7] [Reference Citation Analysis] [Abstract] [MESH Headings] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Indexed: 11/29/2022]
Abstract
Reactions of CuX2.nH2O with the biscarboxylate ligand XDK (H2XDK = m-xylenediamine bis(Kemp's triacid imide)) in the presence of N-donor auxiliary ligands yielded a series of dicopper(II) complexes, [Cu2(mu-OH)(XDK)(L)2]X (L = N,N,N',N'-tetramethylethylenediamine (tetmen), X = NO3 (1a), Cl (1b); L = N,N,N'-trimethylethylenediamine (tmen), X = NO3 (2a), Cl (2b); L =2,2'-bipyridine (bpy), X = NO3 (3); L = 1,10-phenanthroline (phen), X = NO3 (4); L = 4,4'-dimethyl-2,2'-bipyridine (Me2bpy), X = NO3 (5); L = 4-methyl-1,10-phenanthroline (Mephen), X = NO3 (6)). Complexes 1-6 were characterized by X-ray crystallography (Cu...Cu = 3.1624(6)-3.2910(4) A), and the electrochemical and magnetic properties were also examined. Complexes 3 and 4 readily reacted with diphenyl phosphoric acid (HDPP) or bis(4-nitrophenyl) phosphoric acid (HBNPP) to give [Cu2(mu-phosphate)(XDK)(L)2]NO3 (L = bpy, phosphate = DPP (11); L = phen, phosphate = DPP (12), BNPP (13)), where the phsophate diester bridges the two copper ions in a mu-1,3-O,O' bidentate fashion (Cu...Cu = 4.268(3)-4.315(1) A). Complexes 4 and 6 with phen and Mephen have proven to be good precursors to accommodate a series of sugar monophosphate esters (Sugar-P) onto the biscarboxylate-bridged dicopper centers, yielding [Cu2(mu-Sugar-P)(XDK)(L)2] (Sugar-P = alpha-D-Glc-1-P (23a and b), D-Glc-6-P (24a and b), D-Man-6-P (25a), D-Fru-6-P (26a and b); L = phen (a), Mephen (b)) and [Cu2(mu-Gly-n-P)(XDK)(Mephen)2] (Gly-n-P = glycerol n-phosphate; n = 2 (21), 3 (22)), where Glc, Man, and Fru are glucose, mannose, and fructose, respectively. The structure of [Cu2(mu-MNPP)(XDK)(phen)2(CH3OH)] (20) was characterized as a reference compound (H2MNPP = 4-nitrophenyl phosphoric acid). Complexes 4 and 6 also reacted with d-fructose 1,6-bisphosphate (D-Fru-1,6-P2) to afford the tetranuclear copper(II) complexes formulated as [Cu4(mu-D-Fru-1,6-P2)(XDK)2(L)4] (L = phen (27a), Mephen (27b)). The detailed structure of 27a was determined by X-ray crystallography to involve two different tetranuclear complexes with alpha- and beta-anomers of D-Fru-1,6-P2, [Cu4(mu-alpha-D-Fru-1,6-P2)(XDK)2(phen)4] and [Cu4(mu-beta-D-Fru-1,6-P2)(XDK)2(phen)4], in which the D-Fru-1,6-P2 tetravalent anion bridges the two [Cu2(XDK)(phen)2]2+ units through the C1 and C6 phosphate groups in a mu-1,3-O,O' bidentate fashion (Cu...Cu = 4.042(2)-4.100(2) A). Notably, the structure with alpha-D-Fru-1,6-P2 demonstrated the presence of a strong hydrogen bond between the C2 hydroxyl group and the C1 phosphate oxygen atom, which may support the previously proposed catalytic mechanism in the active site of fructose-1,6-bisphosphatase.
Collapse
Affiliation(s)
- Merii Kato
- Department of Chemistry, Faculty of Science, Nara Women's University, Kitauoya-higashi-machi, Nara 630-8285, Japan
| | | | | |
Collapse
|