Chelate Ring Size Variations and Their Effects on Coordination Chemistry and Catechol Dioxygenase Reactivity of Iron(III) Complexes

Biological Inspirations: Iron Complexes Mimicking the Catechol Dioxygenases

Within the broad group of Fe non-heme oxidases, our attention was focused on the catechol 1,2- and 2,3-dioxygenases, which catalyze the oxidative cleavage of aromatic rings. A large group of Fe complexes with N/O ligands, ranging from N₃ to N₂O₂S, was developed to mimic the activity of these enzymes. The Fe complexes discussed in this work can mimic the intradiol/extradiol catechol dioxygenase reaction mechanism. Electronic effects of the substituents in the ligand affect the Lewis acidity of the Fe center, increasing the ability to activate dioxygen and enhancing the catalytic activity of the discussed biomimetic complexes. The ligand architecture, the geometric isomers of the complexes, and the substituent steric effects significantly affect the ability to bind the substrate in a monodentate and bidentate manner. The substrate binding mode determines the preferred mechanism and, consequently, the main conversion products. The preferred mechanism of action can also be affected by the solvents and their ability to form the stable complexes with the Fe center. The electrostatic interactions of micellar media, similar to SDS, also control the intradiol/extradiol mechanisms of the catechol conversion by discussed biomimetics.

Use of cyclic peptides to induce crystallization: case study with prolyl hydroxylase domain 2

Crystallization is the bottleneck in macromolecular crystallography; even when a protein crystallises, crystal packing often influences ligand-binding and protein-protein interaction interfaces, which are the key points of interest for functional and drug discovery studies. The human hypoxia-inducible factor prolyl hydroxylase 2 (PHD2) readily crystallises as a homotrimer, but with a sterically blocked active site. We explored strategies aimed at altering PHD2 crystal packing by protein modification and molecules that bind at its active site and elsewhere. Following the observation that, despite weak inhibition/binding in solution, succinamic acid derivatives readily enable PHD2 crystallization, we explored methods to induce crystallization without active site binding. Cyclic peptides obtained via mRNA display bind PHD2 tightly away from the active site. They efficiently enable PHD2 crystallization in different forms, both with/without substrates, apparently by promoting oligomerization involving binding to the C-terminal region. Although our work involves a specific case study, together with those of others, the results suggest that mRNA display-derived cyclic peptides may be useful in challenging protein crystallization cases.

Tri(pyridylmethyl)phosphine: the elusive congener of TPA shows surprisingly different coordination behavior

Tri(pyridylmethyl)phosphine (TPPh), the remarkably elusive congener of tri(pyridylmethyl)amine (TPA), has been prepared, as well as the relative tri(N-methyl-pyridylamino)phosphine (TPAMP). The coordination properties of these new ligands have been evaluated for chromium(III), iron(II), and ruthenium(II) complexes and compared with the related TPA complexes. In all cases, a different coordination behavior has been observed whereby TPPh and TPAMP always act as tridentate ligands. A chromium(III) complex [Cr(TPPh)Cl3] has been prepared, which has shown low ethylene oligomerization activity. Octahedral low spin iron(II) complexes [Fe(TPPh)2](2+) and [Fe(TPAMP)2](2+) were obtained with two ligands bound to the metal center. Ruthenium(II) chloro complexes of TPA and TPPh undergo ligand exchange reactions in acetonitrile, and the ruthenium(II) complex [Ru(MeCN)2(TPA)](2+) can be oxidized by m-CPBA in acetonitrile to give a transient ruthenium(IV) oxo complex [Ru(O)(MeCN)(TPA)](2+). Attempts to generate high valent ruthenium(IV) oxo TPPh or TPAMP complexes could not be achieved, probably due to insufficient stabilization by these strong field ligands.

The bis(acetonitrile-κN)bis[N,N-bis(diphenylphosphanyl)ethanamine-κ2P,P']iron(II) tetrabromidoferrate(II) and μ-oxido-bis[tribromidoferrate(III)] complex salts

Orange crystals of bis(acetonitrile-κN)bis[N,N-bis(diphenylphosphanyl)ethanamine-κ(2)P,P']iron(II) tetrabromidoferrate(II), [Fe(CH(3)CN)(2)(C(26)H(25)NP(2))(2)][FeBr(4)], (I), and red crystals of bis(acetonitrile-κN)bis[N,N-bis(diphenylphosphanyl)ethanamine-κ(2)P,P']iron(II) μ-oxido-bis[tribromidoferrate(III)], [Fe(CH(3)CN)(2)(C(26)H(25)NP(2))(2)][Fe(2)Br(6)O], (II), were obtained from the same solution after prolonged exposure to atmospheric oxygen, resulting in partial oxidation of the [FeBr(4)](2-) anion to the [Br(3)FeOFeBr(3)](2-) anion. The asymmetric unit of (I) consists of three independent cations, one on a general position and two on inversion centres, with two anions, required to balance the charge, located on general positions. The asymmetric unit of (II) consists of two independent cations and two anions, all on special positions. The geometric parameters within the coordination environments of the cations do not differ significantly, with the major differences being in the orientation of the phenyl rings on the bidentate phosphane ligand. The ethyl substituent in the cation of (II) and the Br atoms in the anions of (II) are disordered. The P-Fe-P bite angles represent the smallest angles reported to date for octahedral Fe(II) complexes containing bidentate phosphine ligands with MeCN in the axial positions, ranging from 70.82 (3) to 70.98 (4)°. The average Fe-Br bond distances of 2.46 (2) and 2.36 (2) Å in the [FeBr(4)](2-) and [Br(3)FeOFeBr(3)](2-) anions, respectively, illustrate the differences in the Fe oxidation states.

Iron(III)-catecholato complexes as structural and functional models of the intradiol-cleaving catechol dioxygenases

The structural and spectroscopic characterization of mononuclear iron(III)-catecholato complexes of ligand L4 (methyl bis(1-methylimidazol-2-yl)(2-hydroxyphenyl)methyl ether, HL4) are described, which closely mimic the enzyme-substrate complex of the intradiol-cleaving catechol dioxygenases. The tridentate, tripodal monoanionic ligand framework of L4 incorporates one phenolato and two imidazole donor groups and thus well reproduces the His2Tyr endogenous donor set. In fact, regarding the structural features of [FeIII(L4)(tcc)(H2O)] (5.H2O, tcc = tetrachlorocatechol) in the solid state, the complex constitutes the closest structural model reported to date. The iron(III)-catecholato complexes mimic both the structural features of the active site and its spectroscopic characteristics. As part of its spectroscopic characterization, the electron paramagnetic resonance (EPR) spectra were successfully simulated using a simple model that accounts for D strain. The simulation procedure showed that the observed g = 4.3 line is an intrinsic part of the EPR envelope of the studied complexes and should not necessarily be attributed to a highly rhombic impurity. [FeIII(L4)(dtbc)(H2O)] (dtbc = 3,5-di-tert-butylcatechol) was studied with respect to its dioxygen reactivity, and oxidative cleavage of the substrate was observed. Intradiol- and extradiol-type cleavage products were found in roughly equal amounts. This shows that an accurate structural model of the first-coordination sphere of the active site is not sufficient for obtaining regioselectivity.

A New Tripodal Iron(III) Monophenolate Complex: Effects of Ligand Basicity, Steric Hindrance, and Solvent on Regioselective Extradiol Cleavage

The new iron(III) complex [Fe(L3)Cl(2)], where H(L3) is the tripodal monophenolate ligand N,N-dimethyl-N'-(pyrid-2-ylmethyl)-N'-(2-hydroxy-3,5-dimethylbenzyl)ethylenediamine, has been isolated and studied as a structural and functional model for catechol dioxygenase enzymes. The complex possesses a distorted octahedral iron(III) coordination geometry constituted by the phenolate oxygen, pyridine nitrogen and two amine nitrogens of the tetradentate ligand, and two cis-coordinated chloride ions. The Fe-O-C bond angle (134.0 degrees) and Fe-O bond length (1.889 Angstrom) are very close to those (Fe-O-C, 133 degrees and 148 degrees, Fe-O(tyrosinate), 1.81 and 1.91 Angstrom) of protocatechuate 3,4-dioxygenase enzymes. When the complex is treated with AgNO(3), the ligand-to-metal charge transfer (LMCT) band around 650 nm (epsilon, 2390 M(-1) cm(-1)) is red shifted to 665 nm with an increase in absorptivity (epsilon, 2630 M(-1) cm(-1)) and the Fe(III)/Fe(II) redox couple is shifted to a slightly more positive potential (-0.329 to -0.276 V), suggesting an increase in the Lewis acidity of the iron(III) center upon the removal of coordinated chloride ions. Furthermore, when 3,5-di-tert-butylcatechol (H(2)DBC) pretreated with 2 mol of Et(3)N is added to the complex [Fe(L3)Cl(2)] treated with 2 equiv of AgNO(3), two intense catecholate-to-iron(III) LMCT bands (719 nm, epsilon, 3150 M(-1) cm(-1); 494 nm, epsilon, 3510 M(-1) cm(-1)) are observed. Similar observations are made when H(2)DBC pretreated with 2 mol of piperidine is added to [Fe(L3)Cl(2)], suggesting the formation of [Fe(L3)(DBC)] with bidentate coordination of DBC(2-). On the other hand, when H(2)DBC pretreated with 2 mol of Et(3)N is added to [Fe(L3)Cl(2)], only one catecholate-to-iron(III) LMCT band (617 nm; epsilon, 4380 M(-1) cm(-1)) is observed, revealing the formation of [Fe(L3)(HDBC)(Cl)] involving monodentate coordination of the catecholate. The appearance of the DBSQ/H(2)DBC couple for [Fe(L3)(DBC)] at a potential (-0.083 V) more positive than that (-0.125 V) for [Fe(L3)(HDBC)(Cl)] reveals that chelated DBC(2-) in the former is stabilized toward oxidation more than the coordinated HDBC(-). It is remarkable that the complex [Fe(L3)(HDBC)(Cl)] undergoes slow selective extradiol cleavage (17.3%) of H(2)DBC in the presence of O(2), unlike the iron(III)-phenolate complexes known to yield only intradiol products. It is probable that the weakly coordinated (2.310 Angstrom) -NMe(2) group rather than chloride in the substrate-bound complex is displaced, facilitating O(2) attack on the iron(III) center and, hence, the extradiol cleavage. In contrast, when the cleavage reaction was performed in the presence of a stronger base-like piperidine before and after the removal of the coordinated chloride ions, a faster intradiol cleavage was favored over extradiol cleavage, suggesting the importance of the bidentate coordination of the catecholate substrate in facilitating intradiol cleavage. Also, intradiol cleavage is favored in dimethylformamide and acetonitrile solvents, with enhanced intradiol cleavage yields of 94 and 40%, respectively.

Modeling the 2-His-1-Carboxylate Facial Triad: Iron−Catecholato Complexes as Structural and Functional Models of the Extradiol Cleaving Dioxygenases

Mononuclear iron(II)- and iron(III)-catecholato complexes with three members of a new 3,3-bis(1-alkylimidazol-2-yl)propionate ligand family have been synthesized as models of the active sites of the extradiol cleaving catechol dioxygenases. These enzymes are part of the superfamily of dioxygen-activating mononuclear non-heme iron enzymes that feature the so-called 2-His-1-carboxylate facial triad. The tridentate, tripodal, and monoanionic ligands used in this study include the biologically relevant carboxylate and imidazole donor groups. The structure of the mononuclear iron(III)-tetrachlorocatecholato complex [Fe(L3)(tcc)(H2O)] was determined by single-crystal X-ray diffraction, which shows a facial N,N,O capping mode of the ligand. For the first time, a mononuclear iron complex has been synthesized, which is facially capped by a ligand offering a tridentate Nim,Nim,Ocarb donor set, identical to the endogenous ligands of the 2-His-1-carboxylate facial triad. The iron complexes are five-coordinate in noncoordinating media, and the vacant coordination site is accessible for Lewis bases, e.g., pyridine, or small molecules such as dioxygen. The iron(II)-catecholato complexes react with dioxygen in two steps. In the first reaction the iron(II)-catecholato complexes rapidly convert to the corresponding iron(III) complexes, which then, in a second slow reaction, exhibit both oxidative cleavage and auto-oxidation of the substrate. Extradiol and intradiol cleavage are observed in noncoordinating solvents. The addition of a proton donor results in an increase in extradiol cleavage. The complexes add a new example to the small group of synthetic iron complexes capable of eliciting extradiol-type cleavage and provide more insight into the factors determining the regioselectivity of the enzymes.

Trigonal-Bipyramidal Geometry Induced by an External Water Ligand in a Sterically Hindered Iron Salen Complex, Related to the Active Site of Protocatechuate 3,4-Dioxygenase

A unique distorted trigonal-bipyramidal geometry observed for the non-heme iron center in protocatechuate 3,4-dioxygenase (3,4-PCD) was carefully examined utilizing a sterically hindered iron salen complex, which well reproduces the endogenous His2Tyr2 donor set with water as an external ligand. X-ray crystal structures of a series of iron model complexes containing bis(3,5-dimesitylsalicylidene)-1,2-dimesitylethylenediamine indicate that a distorted trigonal-bipyramidal geometry is achieved upon binding of water as an external ligand. The extent of a structural change of the iron center from a preferred square-pyramidal to a distorted trigonal-bipyramidal geometry varies with the external ligand that is bound in the order Cl << EtO < H2O, which is consistent with the spectrochemical series. The distortion in the model system is not due to steric repulsions but electronic interactions between the external ligand and the iron center, as evidenced from the X-ray crystal structures of another series of iron model complexes with a less-hindered bis(3-xylylsalicylidene)-1,2-dimesitylethylenediamine ligand, as well as by density functional theory calculations. Further spectroscopic investigations indicate that a unique distorted trigonal-bipyramidal geometry is indeed maintained even in solution. The present model study provides a new viewpoint that a unique distorted trigonal-bipyramidal iron site might not be preorganized by a 3,4-PCD protein but could be electronically induced upon the binding of an external hydroxide ligand to the iron(III) center. The structural change induced by the external water ligand is also discussed in relation to the reaction mechanism of 3,4-PCD.