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Kim H, Mandal D, Ng JKJ, Qu ZW, Grimme S, Stephan DW. Fluorination/Dearomatization of C 6F 5 Groups: An FLP Route to an Electrophilic Borane and Non-Coordinating Anions. Chemistry 2024; 30:e202401776. [PMID: 38735846 DOI: 10.1002/chem.202401776] [Citation(s) in RCA: 0] [Impact Index Per Article: 0] [Reference Citation Analysis] [Abstract] [Key Words] [Grants] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Received: 05/08/2024] [Revised: 05/10/2024] [Accepted: 05/12/2024] [Indexed: 05/14/2024]
Abstract
B(C6F5)3 and the corresponding anion [B(C6F5)4]- are ubiquitous in main group and transition metal chemistry. Known derivatives are generally limited to the incorporation of electron donating substituents. Herein we describe electrophilic fluorination and dearomatization of such species using XeF2 in the presence of BF3 or Lewis acidic cations. In this fashion the anions [HB(C6F5)3]-, [B(C6F5)4]- and [(C6F5)3BC≡NB(C6F5)3]-, are converted to [FB(C6F7)3]-, [B(C6F7)4]-, and [(C6F7)3BC≡NB(C6F7)3]-, respectively. Similarly, the borane adducts (L)B(C6F7)3 (L=MeCN, OPEt3) are produced. These rare examples of electrophilic attack of electron deficient rings proceed as [XeF][BF4] acts as a frustrated Lewis pair effecting fluorination and dearomatization of C6F5 rings.
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Affiliation(s)
- Hyehwang Kim
- Department of Chemistry, University of Toronto, 80 St. George Street, Toronto, Ontario, M5S 3H6, Canada
| | - Dipendu Mandal
- Department of Chemistry, University of Toronto, 80 St. George Street, Toronto, Ontario, M5S 3H6, Canada
- Institute of Drug Discovery Technology, Ningbo University, Ningbo, 315211, Zhejiang, China
| | - Joshua Kye Jin Ng
- Department of Chemistry, University of Toronto, 80 St. George Street, Toronto, Ontario, M5S 3H6, Canada
| | - Zheng-Wang Qu
- Mulliken Center for Theoretical Chemistry, Clausius Institut für Physikalische und Theoretische Chemie, Rheinische Friedrich-Wilhelms-Universität Bonn, Beringstrasse 4, 53115, Bonn, Germany
| | - Stefan Grimme
- Mulliken Center for Theoretical Chemistry, Clausius Institut für Physikalische und Theoretische Chemie, Rheinische Friedrich-Wilhelms-Universität Bonn, Beringstrasse 4, 53115, Bonn, Germany
| | - Douglas W Stephan
- Department of Chemistry, University of Toronto, 80 St. George Street, Toronto, Ontario, M5S 3H6, Canada
- Institute of Drug Discovery Technology, Ningbo University, Ningbo, 315211, Zhejiang, China
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2
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Wang L, Yan X, Tian G, Xie Z, Shi S, Zhang Y, Li S, Sun X, Sun J, He J, Shen H. Chiral copper-hydride nanoclusters: synthesis, structure, and assembly. Dalton Trans 2023; 52:3371-3377. [PMID: 36810425 DOI: 10.1039/d2dt03788b] [Citation(s) in RCA: 4] [Impact Index Per Article: 4.0] [Reference Citation Analysis] [Abstract] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Indexed: 02/05/2023]
Abstract
An effective strategy is developed to synthesize a novel and stable layered Cu nanocluster using a one-pot reduction method. The cluster, with a molecular formula of [Cu14(tBuS)3(PPh3)7H10]BF4 which has been unambiguously characterized by single crystal X-ray diffraction analysis, exhibits different structures from previously reported analogues with core-shell geometries. In the absence of chiral ligands, the cluster displays intrinsic chirality owing to the non-covalent ligand-ligand interactions (e.g., C-H⋯Cu interactions and C-H⋯π interactions) to lock the central copper core. The interlacing of chiral-cluster enantiomers forms a large cavity, which lays the foundation for a series of potential applications such as drug filling and gas adsorption. Moreover, the C-H⋯H-C interactions of phenyl groups between different cluster moieties promote the formation of a dextral helix and realization of the self-assembly of nanostructures.
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Affiliation(s)
- Lin Wang
- College of Energy Materials and Chemistry, Inner Mongolia University, Hohhot 010021, China. .,College of Chemistry and Chemical Engineering, Inner Mongolia University, Hohhot 010021, China.
| | - Xiaodan Yan
- College of Chemistry and Chemical Engineering, Inner Mongolia University, Hohhot 010021, China.
| | - Guolong Tian
- State Key Laboratory of Physical Chemistry of Solid Surfaces and College of Chemistry and Chemical Engineering, Xiamen University, Xiamen, 361005, China
| | - Zhenlang Xie
- State Key Laboratory of Physical Chemistry of Solid Surfaces and College of Chemistry and Chemical Engineering, Xiamen University, Xiamen, 361005, China
| | - Shanshan Shi
- Department of Chemistry and Chemical Engineering, Hefei Normal University, 230061, Hefei, Anhui, China.
| | - Yuhao Zhang
- State Key Laboratory of Physical Chemistry of Solid Surfaces and College of Chemistry and Chemical Engineering, Xiamen University, Xiamen, 361005, China
| | - Simin Li
- College of Energy Materials and Chemistry, Inner Mongolia University, Hohhot 010021, China.
| | - Xueli Sun
- College of Energy Materials and Chemistry, Inner Mongolia University, Hohhot 010021, China.
| | - Jing Sun
- College of Energy Materials and Chemistry, Inner Mongolia University, Hohhot 010021, China.
| | - Jinlu He
- College of Chemistry and Chemical Engineering, Inner Mongolia University, Hohhot 010021, China.
| | - Hui Shen
- College of Energy Materials and Chemistry, Inner Mongolia University, Hohhot 010021, China.
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3
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Novikov AS, Bolotin DS. Xenon Derivatives as Aerogen Bond-Donating Catalysts for Organic Transformations: A Theoretical Study on the Metaphorical "Spherical Cow in a Vacuum" Provides Insights into Noncovalent Organocatalysis. J Org Chem 2023; 88:1936-1944. [PMID: 35679603 DOI: 10.1021/acs.joc.2c00680] [Citation(s) in RCA: 2] [Impact Index Per Article: 2.0] [Reference Citation Analysis] [Abstract] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Indexed: 12/30/2022]
Abstract
Computations indicate that cationic and noncharged xenon derivatives should exhibit higher catalytic activity than their iodine-based noncovalent organocatalytic congeners. Perfluorophenyl xenonium(II) is expected to demonstrate the best balance between catalytic activity and chemical stability for use in organocatalysis. Comparing its catalytic activity with that of isoelectronic perfluoroiodobenzene indicates that the high catalytic activity of cationic noncovalent organocatalysts is predominantly attributed to the electrostatic interactions with the reaction substrates, which cause the polarization of ligated species during the reaction progress. In contrast, the electron transfer and covalent contributions to the bonding between the catalyst and substrate have negligible effects. The dominant effect of electrostatic interactions results in a strong negative correlation between the calculated Gibbs free energies of activation for the modeled reactions and the highest potentials of the σ-holes on the central atoms of the catalysts. No such correlation is observed for noncharged catalysts.
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Affiliation(s)
- Alexander S Novikov
- Institute of Chemistry, Saint Petersburg State University, Universitetskaya Nab. 7/9, Saint Petersburg 199034, Russian Federation.,Peoples' Friendship University of Russia (RUDN University), Moscow 117198, Russian Federation
| | - Dmitrii S Bolotin
- Institute of Chemistry, Saint Petersburg State University, Universitetskaya Nab. 7/9, Saint Petersburg 199034, Russian Federation
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4
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Gomila RM, Frontera A. Covalent and Non-covalent Noble Gas Bonding Interactions in XeF n Derivatives ( n = 2-6): A Combined Theoretical and ICSD Analysis. Front Chem 2020; 8:395. [PMID: 32435634 PMCID: PMC7218167 DOI: 10.3389/fchem.2020.00395] [Citation(s) in RCA: 17] [Impact Index Per Article: 4.3] [Reference Citation Analysis] [Abstract] [Key Words] [Track Full Text] [Download PDF] [Figures] [Journal Information] [Subscribe] [Scholar Register] [Received: 03/03/2020] [Accepted: 04/15/2020] [Indexed: 11/13/2022] Open
Abstract
A noble gas bond (also known in the literature as aerogen bond) can be defined as the attractive interaction between any element of group-18 acting as a Lewis acid and any electron rich atom of group of atoms, thus following the IUPAC recommendation available for similar π,σ-hole interactions involving elements of groups 17 (halogens) and 16 (chalcogens). A significant difference between noble gas bonding (NgB) and halogen (HaB) or chalcogen (ChB) bonding is that whilst the former is scarcely found in the literature, HaB and ChB are very common and their applications in important fields like catalysis, biochemistry or crystal engineering have exponentially grown in the last decade. This article combines theory and experiment to highlight the importance of non-covalent NgBs in the solid state of several xenon fluorides [XeFn]m+ were the central oxidation state of Xe varies from +2 to +6 and the number of fluorine atoms varies from n = 2 to 6. The compounds with an odd number of fluorine atoms (n = 3 and 5) are cationic (m = 1). The Inorganic Crystal Structural Database (ICSD) strongly evidences the relevance of NgBs in the solid state structures of xenon derivatives. The ability of Xe compounds to participate in π,σ-hole interactions has been studied using different types of electron donors (Lewis bases and anions) using DFT calculations (PBE1PBE-D3/def2-TZVP) and the molecular electrostatic potential (MEP) surfaces.
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Affiliation(s)
- Rosa M Gomila
- Serveis Cientificotècnics, Universitat de les Illes Balears, Palma, Spain
| | - Antonio Frontera
- Department of Chemistry, Universitat de les Illes Balears, Palma, Spain
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5
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Bauzá A, Frontera A. σ/π-Hole noble gas bonding interactions: Insights from theory and experiment. Coord Chem Rev 2020. [DOI: 10.1016/j.ccr.2019.213112] [Citation(s) in RCA: 47] [Impact Index Per Article: 11.8] [Reference Citation Analysis] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Indexed: 12/20/2022]
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6
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Levason W, Monzittu FM, Reid G. Coordination chemistry and applications of medium/high oxidation state metal and non-metal fluoride and oxide-fluoride complexes with neutral donor ligands. Coord Chem Rev 2019. [DOI: 10.1016/j.ccr.2019.04.005] [Citation(s) in RCA: 22] [Impact Index Per Article: 4.4] [Reference Citation Analysis] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Indexed: 12/18/2022]
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7
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Zierkiewicz W, Michalczyk M, Scheiner S. Aerogen bonds formed between AeOF 2 (Ae = Kr, Xe) and diazines: comparisons between σ-hole and π-hole complexes. Phys Chem Chem Phys 2018; 20:4676-4687. [PMID: 29345698 DOI: 10.1039/c7cp08048d] [Citation(s) in RCA: 31] [Impact Index Per Article: 5.2] [Reference Citation Analysis] [Abstract] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Indexed: 11/21/2022]
Abstract
The interaction between KrOF2 or XeOF2 and the 1,2, 1,3, and 1,4 diazines is characterized chiefly by a Kr/XeN aerogen bond, as deduced from ab initio calculations. The most stable dimers take advantage of the σ-hole on the aerogen atom, wherein the two molecules lie in the same plane. The interaction is quite strong, as much as 18 kcal mol-1. A second class of dimer geometry utilizes the π-hole above the aerogen atom in an approximate perpendicular arrangement of the two monomers; these structures are not as strongly bound: 6-8 kcal mol-1. Both sorts of dimers contain auxiliary CHF H-bonds which contribute to their stability, but even with their removal, the aerogen bond energy remains as high as 14 kcal mol-1. The nature and strength of each specific interaction is confirmed and quantified by AIM, NCI, NBO, and electron density shift patterns. There is not a great deal of sensitivity to the identity of either the aerogen atom or the position of the two N atoms in the diazine.
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Affiliation(s)
- Wiktor Zierkiewicz
- Faculty of Chemistry, Wrocław University of Science and Technology, Wybrzeże Wyspiańskiego 27, 50-370 Wrocław, Poland.
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Goettel JT, Haensch VG, Schrobilgen GJ. Stable Chloro- and Bromoxenate Cage Anions; [X3(XeO3)3]3– and [X4(XeO3)4]4– (X = Cl or Br). J Am Chem Soc 2017; 139:8725-8733. [DOI: 10.1021/jacs.7b04067] [Citation(s) in RCA: 13] [Impact Index Per Article: 1.9] [Reference Citation Analysis] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Indexed: 11/28/2022]
Affiliation(s)
- James T. Goettel
- Department of Chemistry, McMaster University, Hamilton, Ontario L8S
4M1, Canada
| | - Veit G. Haensch
- Department of Chemistry, McMaster University, Hamilton, Ontario L8S
4M1, Canada
| | - Gary J. Schrobilgen
- Department of Chemistry, McMaster University, Hamilton, Ontario L8S
4M1, Canada
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Makarewicz E, Lundell J, Gordon AJ, Berski S. On the nature of interactions in the F2 OXe(…) NCCH3 complex: Is there the Xe(IV)N bond? J Comput Chem 2016; 37:1876-86. [PMID: 27302488 DOI: 10.1002/jcc.24402] [Citation(s) in RCA: 15] [Impact Index Per Article: 1.9] [Reference Citation Analysis] [Abstract] [Key Words] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Received: 01/05/2016] [Revised: 03/28/2016] [Accepted: 04/02/2016] [Indexed: 01/08/2023]
Abstract
Nature of the bonding in isolated XeOF2 molecule and F2 OXe(…) NCCH3 complexes have been studied in the gas phase (0 K) using Quantum Chemical Topology methods. The wave functions have been approximated at the MP2 and DFT levels of calculations, using the APFD, B3LYP, M062X, and B2PLYP functionals with the GD3 dispersion correction. The nature of the formal XeO bond in the XeOF2 monomer depends on the basis set used (all-electron vs. the ecp-28 approximation for Xe). Within the all-electron basis set approach the bond is represented by two bonding attractors, Vi = 1,2 (Xe,O), with total population of about 1.06e and highly delocalized electron density in both bonding basins. No bonding basins are observed using the ecp-28 approximation. These results shows that the nature of xenon-oxygen is complicated and may be described with mesomeric equilibrium of the Lewis representations: Xe((+)) O((-)) and Xe((-)) O((+)) . For both the xenon-oxygen and xenon-fluorine interactions the charge-shift model can be applied. The F2 OXe(…) NCCH3 complex exists in two structures: "parallel," stabilized by non-covalent C(…) O and Xe(…) N interactions and "linear" stabilized by the Xe(…) N interaction. Topological analysis of ELF shows that the F2 OXe(…) NCCH3 molecule appears as a weakly bound intermolecular complex. Intermolecular interaction energy components have also been studied using Symmetry Adapted Perturbation Theory. © 2016 Wiley Periodicals, Inc.
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Affiliation(s)
- Emilia Makarewicz
- Faculty of Chemistry, University of Wroclaw, F. Joliot-Curie 15, Wroclaw, 50-383, Poland
| | - Jan Lundell
- Department of Chemistry, University of Jyväskylä, Jyväskylä, FI-40014, Finland
| | - Agnieszka J Gordon
- Faculty of Chemistry, University of Wroclaw, F. Joliot-Curie 15, Wroclaw, 50-383, Poland
| | - Slawomir Berski
- Faculty of Chemistry, University of Wroclaw, F. Joliot-Curie 15, Wroclaw, 50-383, Poland
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10
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Haner J, Matsumoto K, Mercier HPA, Schrobilgen GJ. Nature of the XeVI
−N Bonds in F6
XeNCCH3
and F6
Xe(NCCH3
)2
and the Stereochemical Activity of Their Xenon Valence Electron Lone Pairs. Chemistry 2016; 22:4833-42. [DOI: 10.1002/chem.201504904] [Citation(s) in RCA: 13] [Impact Index Per Article: 1.6] [Reference Citation Analysis] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Received: 12/04/2015] [Indexed: 11/07/2022]
Affiliation(s)
- Jamie Haner
- Department of Chemistry; McMaster University; Hamilton ON L8S 4M1 Canada
| | - Kazuhiko Matsumoto
- Department of Chemistry; McMaster University; Hamilton ON L8S 4M1 Canada
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11
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Matsumoto K, Haner J, Mercier HPA, Schrobilgen GJ. Syntheses and Structures of F
6
XeNCCH
3
and F
6
Xe(NCCH
3
)
2. Angew Chem Int Ed Engl 2015. [DOI: 10.1002/ange.201507635] [Citation(s) in RCA: 8] [Impact Index Per Article: 0.9] [Reference Citation Analysis] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Indexed: 11/11/2022]
Affiliation(s)
- Kazuhiko Matsumoto
- Department of Chemistry, McMaster University, Hamilton, ON, L8S 4M1 (Canada)
| | - Jamie Haner
- Department of Chemistry, McMaster University, Hamilton, ON, L8S 4M1 (Canada)
| | | | - Gary J. Schrobilgen
- Department of Chemistry, McMaster University, Hamilton, ON, L8S 4M1 (Canada)
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12
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Matsumoto K, Haner J, Mercier HPA, Schrobilgen GJ. Syntheses and Structures of F6XeNCCH3and F6Xe(NCCH3)2. Angew Chem Int Ed Engl 2015; 54:14169-73. [DOI: 10.1002/anie.201507635] [Citation(s) in RCA: 17] [Impact Index Per Article: 1.9] [Reference Citation Analysis] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Received: 08/14/2015] [Indexed: 11/08/2022]
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13
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DFT Study of the effects of counter ions on bonding, molecular and spectral properties of pentaflourophenyl xenonium diflouride cation. J CHEM SCI 2015. [DOI: 10.1007/s12039-015-0934-7] [Citation(s) in RCA: 0] [Impact Index Per Article: 0] [Reference Citation Analysis] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Indexed: 10/22/2022]
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15
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Bauzá A, Frontera A. Aerogen Bonding Interaction: A New Supramolecular Force? Angew Chem Int Ed Engl 2015; 54:7340-3. [PMID: 25950423 DOI: 10.1002/anie.201502571] [Citation(s) in RCA: 258] [Impact Index Per Article: 28.7] [Reference Citation Analysis] [Abstract] [Key Words] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Received: 03/19/2015] [Indexed: 11/07/2022]
Abstract
We report evidence of the favorable noncovalent interaction between a covalently bonded atom of Group 18 (known as noble gases or aerogens) and a negative site, for example, a lone pair of a Lewis base or an anion. It involves a region of positive electrostatic potential (σ-hole), therefore it is a totally new and unexplored σ-hole-based interaction, namely aerogen bonding. We demonstrate for the first time the existence of σ-hole regions in aerogen derivatives by means of high-level ab initio calculations. In addition, several crystal structures retrieved from the Cambridge Structural Database (CSD) give reliability to the calculations. Energetically, aerogen bonds are comparable to hydrogen bonds and other σ-hole-based interactions but less directional. They are expected to be important in xenon chemistry.
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Affiliation(s)
- Antonio Bauzá
- Departament de Química, Universitat de les Illes Balears, Crta. de Valldemossa km 7.5, 07122 Palma, Baleares (Spain)
| | - Antonio Frontera
- Departament de Química, Universitat de les Illes Balears, Crta. de Valldemossa km 7.5, 07122 Palma, Baleares (Spain).
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16
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Affiliation(s)
- Jamie Haner
- Department of Chemistry, McMaster University , Hamilton, Ontario L8S 4M1, Canada
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