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Gregoliński J, Ślepokura K. Monomeric and dimeric nitrate lanthanide(III) and yttrium(III) coordination compounds of (2 + 2) imine macrocycle derived from 2,6-diformylpyridine and trans-1,2-diaminocyclopentane. Polyhedron 2020. [DOI: 10.1016/j.poly.2020.114433] [Citation(s) in RCA: 8] [Impact Index Per Article: 2.0] [Reference Citation Analysis] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Indexed: 11/16/2022]
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3
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Starynowicz P, Lisowski J. Chirality transfer between hexaazamacrocycles in heterodinuclear rare earth complexes. Dalton Trans 2019; 48:8717-8724. [PMID: 31134250 DOI: 10.1039/c9dt01318k] [Citation(s) in RCA: 4] [Impact Index Per Article: 0.8] [Reference Citation Analysis] [Abstract] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Indexed: 12/13/2022]
Abstract
Both the chiral hexaazamacrocyle L1 based on trans-1,2-diaminocyclohexane and the achiral hexaazamacrocyle L2 based on ethylenediamine form lanthanide(iii) dinuclear μ-hydroxo bridged complexes which have been characterized by NMR and CD spectroscopy. The homodinuclear complexes of the type [Ln2(L1)2(μ-OH)2](NO3)4 (Ln = NdIII, EuIII, TbIII and YbIII) have been synthesized in the enantiopure form and the X-ray crystal structures of NdIII, EuIII and YbIII derivatives have been determined. The heterodinuclear cationic complexes [Ln(L1)Ln'(L2)(μ-OH)2X2]n+ have been generated and characterized in solution by using the mononuclear complexes of L1 and L2 as substrates. While the formation of [LnLn'(L1)2(μ-OH)2X2]n+ dinuclear complexes is accompanied by chiral narcissistic self-sorting, the formation of [Ln(L1)Ln'(L2)(μ-OH)2X2]n+ dinuclear complexes is accompanied by the sizable sociable self-sorting of macrocyclic units. The homodinuclear complexes [Y2(L1)2(μ-OH)2X2]n+ and [Ln2(L2)2(μ-OH)2X2]n+ (Ln = DyIII, PrIII and NdIII) are CD silent in the visible region due to the lack of f-f transitions and the presence of an achiral ligand, respectively. In contrast, the heterodinuclear [Y(L1S)Ln(L2)(μ-OH)2X2]n+ complexes give rise to CD signals arising from the f-f transitions because of the chirality transfer from the L1 macrocyclic unit to the L2 macrocyclic unit.
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Affiliation(s)
- Przemysław Starynowicz
- Department of Chemistry, University of Wrocław, 14 F. Joliot-Curie, 50-383 Wrocław, Poland.
| | - Jerzy Lisowski
- Department of Chemistry, University of Wrocław, 14 F. Joliot-Curie, 50-383 Wrocław, Poland.
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Chang CA, Lee HY, Lin SL, Meng CN, Wu TT. Dinuclear Lanthanide(III)-m-ODO2A-dimer Macrocyclic Complexes: Solution Speciation, DFT Calculations, Luminescence Properties, and Promoted Nitrophenyl-Phosphate Hydrolysis Rates. Chemistry 2018; 24:6442-6457. [PMID: 29479746 DOI: 10.1002/chem.201800037] [Citation(s) in RCA: 5] [Impact Index Per Article: 0.8] [Reference Citation Analysis] [Abstract] [Key Words] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Received: 01/04/2018] [Indexed: 12/24/2022]
Abstract
Potentiometric speciation studies, mass spectrometry, and DFT calculations helped to predict the various structural possibilities of the dinuclear trivalent lanthanide ion (LnIII , Ln=La, Eu, Tb, Yb, Y) complexes of a novel macrocyclic ligand, m-ODO2A-dimer (H4 L), to correlate with their luminescence properties and the promoted BNPP and HPNP phosphodiester bond hydrolysis reaction rates. The stability constants of the dinuclear Ln2 (m-ODO2A-dimer) complexes and various hydrolytic species confirmed by mass spectrometry were determined. DFT calculations revealed that the Y2 LH-1 and the Y2 LH-2 species tended to form structures with the respective closed- and open-form conformations. Luminescence lifetime data for the heterodimetallic TbEuL system confirmed the fluorescence resonance energy transfer from the TbIII to EuIII ion. The internuclear distance RTbEu values were estimated to be in the range of 9.4-11.3 Å (pH 6.7-10.6), which were comparable to those of the DFT calculated open-form conformations. Multiple linear regression analysis of the kobs data was performed using the equation: kobs,corr. =kobs -kobs,OH =kLn2LHM->1 [Ln2 LH-1 ]+kLn2LH-2 [Ln2 LH-2 ] for the observed Ln2 L-promoted BNPP/HPNP hydrolysis reactions in solution pH from 7 to 10.5 (Ln=Eu, Yb). The results showed that the second-order rate constants for the Eu2 LH-2 and Yb2 LH-2 species were about 50-400 times more reactive than the structural analogous Zn2 (m-12 N3 O-dimer) system.
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Affiliation(s)
- C Allen Chang
- Department of Biomedical Imaging and Radiological Sciences, National Yang-Ming University, No. 155, Sec. 2, Li-Nong St., Beitou, Taipei, Taiwan), 112, Republic of China.,Department of Biotechnology and Laboratory Science in Medicine, National Yang-Ming University, No. 155, Sec. 2, Li-Nong Street, Taipei, 112, Taiwan, Republic of China.,Molecular Imaging Research Center (MIRC), National Yang-Ming University, Taipei, 112, Taiwan, Republic of China.,Department of Biological Science and Technology, National Chiao Tung University, No. 75 Po-Ai Street, Hsinchu, Taiwan, 30039, Republic of China
| | - Hwa-Yu Lee
- Department of Biomedical Imaging and Radiological Sciences, National Yang-Ming University, No. 155, Sec. 2, Li-Nong St., Beitou, Taipei, Taiwan), 112, Republic of China
| | - Syue-Liang Lin
- Department of Biotechnology and Laboratory Science in Medicine, National Yang-Ming University, No. 155, Sec. 2, Li-Nong Street, Taipei, 112, Taiwan, Republic of China
| | - Ching-Ning Meng
- Department of Biomedical Imaging and Radiological Sciences, National Yang-Ming University, No. 155, Sec. 2, Li-Nong St., Beitou, Taipei, Taiwan), 112, Republic of China
| | - Tsung-Ta Wu
- Department of Biological Science and Technology, National Chiao Tung University, No. 75 Po-Ai Street, Hsinchu, Taiwan, 30039, Republic of China
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Tamkovich N, Koroleva L, Kovpak M, Goncharova E, Silnikov V, Vlassov V, Zenkova M. Design, RNA cleavage and antiviral activity of new artificial ribonucleases derived from mono-, di- and tripeptides connected by linkers of different hydrophobicity. Bioorg Med Chem 2016; 24:1346-55. [PMID: 26899594 DOI: 10.1016/j.bmc.2016.02.007] [Citation(s) in RCA: 7] [Impact Index Per Article: 0.9] [Reference Citation Analysis] [Abstract] [Key Words] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Received: 08/23/2015] [Revised: 01/29/2016] [Accepted: 02/05/2016] [Indexed: 11/15/2022]
Abstract
A novel series of metal-free artificial ribonucleases (aRNases) was designed, synthesized and assessed in terms of ribonuclease activity and ability to inactivate influenza virus WSN/A33/H1N1 in vitro. The compounds were built of two short peptide fragments, which include Lys, Ser, Arg, Glu and imidazole residues in various combinations, connected by linkers of different hydrophobicity (1,12-diaminododecane or 4,9-dioxa-1,12-diaminododecane). These compounds efficiently cleaved different RNA substrates under physiological conditions at rates three to five times higher than that of artificial ribonucleases described earlier and displayed RNase A-like cleavage specificity. aRNases with the hydrophobic 1,12-diaminododecane linker displayed ribonuclease activity 3-40 times higher than aRNases with the 4,9-dioxa-1,12-diaminododecane linker. The assumed mechanism of RNA cleavage was typical for natural ribonucleases, that is, general acid-base catalysis via the formation of acid/base pairs by functional groups of amino acids present in the aRNases; the pH profile of cleavage confirmed this mechanism. The most active aRNases under study exhibited high antiviral activity and entirely inactivated influenza virus A/WSN/33/(H1N1) after a short incubation period of viral suspension under physiological conditions.
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Affiliation(s)
- Nikolay Tamkovich
- Institute of Chemical Biology and Fundamental Medicine, Lavrentiev Ave, 8, Novosibirsk 630090, Russia
| | - Lyudmila Koroleva
- Institute of Chemical Biology and Fundamental Medicine, Lavrentiev Ave, 8, Novosibirsk 630090, Russia
| | - Mikhail Kovpak
- Institute of Chemical Biology and Fundamental Medicine, Lavrentiev Ave, 8, Novosibirsk 630090, Russia
| | - Elena Goncharova
- Institute of Chemical Biology and Fundamental Medicine, Lavrentiev Ave, 8, Novosibirsk 630090, Russia
| | - Vladimir Silnikov
- Institute of Chemical Biology and Fundamental Medicine, Lavrentiev Ave, 8, Novosibirsk 630090, Russia
| | - Valentin Vlassov
- Institute of Chemical Biology and Fundamental Medicine, Lavrentiev Ave, 8, Novosibirsk 630090, Russia
| | - Marina Zenkova
- Institute of Chemical Biology and Fundamental Medicine, Lavrentiev Ave, 8, Novosibirsk 630090, Russia.
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6
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Monomeric, dimeric and polymeric lanthanide(III) complexes of a hexaazamacrocyclic imine derived from 2,6-diformylpyridine and ethylenediamine. Polyhedron 2015. [DOI: 10.1016/j.poly.2014.08.032] [Citation(s) in RCA: 6] [Impact Index Per Article: 0.7] [Reference Citation Analysis] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Indexed: 11/19/2022]
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7
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Nibha, Baranwal B, Singh G, Daniliuc CG. Synthesis, characterization and thermolysis of lanthanide metal nitrate complexes with 1, 10-phenanthroline, Part-95. J RARE EARTH 2014. [DOI: 10.1016/s1002-0721(14)60106-x] [Citation(s) in RCA: 8] [Impact Index Per Article: 0.8] [Reference Citation Analysis] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Indexed: 12/01/2022]
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8
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Maxwell CI, Mosey NJ, Stan Brown R. DFT Computational Study of the Methanolytic Cleavage of DNA and RNA Phosphodiester Models Promoted by the Dinuclear Zn(II) Complex of 1,3-Bis(1,5,9-triazacyclododec-1-yl)propane. J Am Chem Soc 2013; 135:17209-22. [DOI: 10.1021/ja4088264] [Citation(s) in RCA: 30] [Impact Index Per Article: 2.7] [Reference Citation Analysis] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Indexed: 12/15/2022]
Affiliation(s)
| | - Nicholas J. Mosey
- Department
of Chemistry, Queen’s University, Kingston, Ontario, Canada K7L 3N6
| | - R. Stan Brown
- Department
of Chemistry, Queen’s University, Kingston, Ontario, Canada K7L 3N6
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Kobyłka MJ, Ślepokura K, Acebrón Rodicio M, Paluch M, Lisowski J. Incorporation of Trinuclear Lanthanide(III) Hydroxo Bridged Clusters in Macrocyclic Frameworks. Inorg Chem 2013; 52:12893-903. [DOI: 10.1021/ic400508y] [Citation(s) in RCA: 28] [Impact Index Per Article: 2.5] [Reference Citation Analysis] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Indexed: 11/29/2022]
Affiliation(s)
- Michał J. Kobyłka
- Department of Chemistry, University of Wrocław, 14 F. Joliot-Curie, 50-383
Wrocław, Poland
| | - Katarzyna Ślepokura
- Department of Chemistry, University of Wrocław, 14 F. Joliot-Curie, 50-383
Wrocław, Poland
| | - Maria Acebrón Rodicio
- Department of Chemistry, University of Wrocław, 14 F. Joliot-Curie, 50-383
Wrocław, Poland
| | - Marta Paluch
- Department of Chemistry, University of Wrocław, 14 F. Joliot-Curie, 50-383
Wrocław, Poland
| | - Jerzy Lisowski
- Department of Chemistry, University of Wrocław, 14 F. Joliot-Curie, 50-383
Wrocław, Poland
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The reactivity of macrocyclic Fe(II) paraCEST MRI contrast agents towards biologically relevant anions, cations, oxygen or peroxide. J Inorg Biochem 2012; 117:212-9. [DOI: 10.1016/j.jinorgbio.2012.06.007] [Citation(s) in RCA: 39] [Impact Index Per Article: 3.3] [Reference Citation Analysis] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Received: 04/13/2012] [Revised: 06/08/2012] [Accepted: 06/10/2012] [Indexed: 01/10/2023]
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11
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Enantioselective cleavage of supercoiled plasmid DNA catalyzed by chiral macrocyclic lanthanide(III) complexes. J Inorg Biochem 2012; 107:1-5. [DOI: 10.1016/j.jinorgbio.2011.10.011] [Citation(s) in RCA: 26] [Impact Index Per Article: 2.2] [Reference Citation Analysis] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Received: 07/12/2011] [Revised: 10/02/2011] [Accepted: 10/26/2011] [Indexed: 11/20/2022]
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12
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The Utility of 2,2′-Bipyrimidine in Lanthanide Chemistry: From Materials Synthesis to Structural and Physical Properties. ACTA ACUST UNITED AC 2011. [DOI: 10.1155/2011/918435] [Citation(s) in RCA: 5] [Impact Index Per Article: 0.4] [Reference Citation Analysis] [Abstract] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Indexed: 01/18/2023]
Abstract
This paper reviews the recent investigations undertaken on the use of 2,2′-bipyrimidine (bpm) as a ligand for designing molecular complexes as well as polymeric lanthanide materials. A special emphasis is put on the ability of this polydentate neutral ligand to yield compounds of various dimensionalities, to act as a connector between these large ions, and influence their emissive and magnetic properties. This ligand can adopt a terminal or a bridging coordination mode with lanthanide ions, thus generating a wealth of frameworks of various topologies with the 4f elements. The main focus of this review is to show the originality brought by bpm in lanthanide structural chemistry and solid-state photophysics and magnetism.
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Lisowski J. Enantiomeric self-recognition in homo- and heterodinuclear macrocyclic lanthanide(III) complexes. Inorg Chem 2011; 50:5567-76. [PMID: 21591800 DOI: 10.1021/ic2001909] [Citation(s) in RCA: 40] [Impact Index Per Article: 3.1] [Reference Citation Analysis] [Abstract] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Indexed: 11/28/2022]
Abstract
The controlled formation of lanthanide(III) dinuclear μ-hydroxo-bridged [Ln(2)L(2)(μ-OH)(2)X(2)](n+) complexes (where X = H(2)O, NO(3)(-), or Cl(-)) of the enantiopure chiral macrocycle L is reported. The (1)H and (13)C NMR resonances of these complexes have been assigned on the basis of COSY, NOESY, TOCSY, and HMQC spectra. The observed NOE connectivities confirm that the dimeric solid-state structure is retained in solution. The enantiomeric nature of the obtained chiral complexes and binding of hydroxide anions are reflected in their CD spectra. The formation of the dimeric complexes is accompanied by a complete enantiomeric self-recognition of the chiral macrocyclic units. The reaction of NaOH with a mixture of two different mononuclear lanthanide(III) complexes, [Ln(1)L](3+) and [Ln(2)L](3+), results in formation of the heterodinuclear [Ln(1)Ln(2)L(2)(μ-OH)(2)X(2)](n+) complexes as well as the corresponding homodinuclear complexes. The formation of the heterodinuclear complex is directly confirmed by the NOESY spectra of [EuLuL(2)(μ-OH)(2)(H(2)O)(2)](4+), which reveal close contacts between the macrocyclic unit containing the Eu(III) ion and the macrocyclic unit containing the Lu(III) ion. While the relative amounts of homo- and heterodinuclear complexes are statistical for the two lanthanide(III) ions of similar radii, a clear preference for the formation of heterodinuclear species is observed when the two mononuclear complexes contain lanthanide(III) ions of markedly different sizes, e.g., La(III) and Yb(III). The formation of heterodinuclear complexes is accompanied by the self-sorting of the chiral macrocyclic units based on their chirality. The reactions of NaOH with a pair of homochiral or racemic mononuclear complexes, [Ln(1)L(RRRR)](3+)/[Ln(2)L(RRRR)](3+), [Ln(1)L(SSSS)](3+)/[Ln(2)L(SSSS)](3+), or [Ln(1)L(rac)](3+)/[Ln(2)L(rac)](3+), results in mixtures of homochiral, homodinuclear and homochiral, heterodinuclear complexes. On the contrary, no heterochiral, heterodinuclear complexes [Ln(1)L(RRRR)Ln(2)L(SSSS)(μ-OH)(2)X(2)](n+) are formed in the reactions of two different mononuclear complexes of opposite chirality.
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Affiliation(s)
- Jerzy Lisowski
- Department of Chemistry, University of Wrocław, 14 F. Joliot-Curie, 50-383 Wrocław, Poland.
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Gao H, Ke Z, DeYonker NJ, Wang J, Xu H, Mao ZW, Phillips DL, Zhao C. Dinuclear Zn(II) Complex Catalyzed Phosphodiester Cleavage Proceeds via a Concerted Mechanism: A Density Functional Theory Study. J Am Chem Soc 2011; 133:2904-15. [DOI: 10.1021/ja106456u] [Citation(s) in RCA: 49] [Impact Index Per Article: 3.8] [Reference Citation Analysis] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Indexed: 01/16/2023]
Affiliation(s)
- Hui Gao
- MOE Key Laboratory of Bioinorganic and Synthetic Chemistry/KLGHEI of Environment and Energy Chemistry, School of Chemistry and Chemical Engineering, Sun Yat-Sen University, Guangzhou 510275, P. R. China
| | - Zhuofeng Ke
- MOE Key Laboratory of Bioinorganic and Synthetic Chemistry/KLGHEI of Environment and Energy Chemistry, School of Chemistry and Chemical Engineering, Sun Yat-Sen University, Guangzhou 510275, P. R. China
| | - Nathan J. DeYonker
- Department of Chemistry, The University of Memphis, Memphis, Tennessee 38152-3550, United States
| | - Juping Wang
- MOE Key Laboratory of Bioinorganic and Synthetic Chemistry/KLGHEI of Environment and Energy Chemistry, School of Chemistry and Chemical Engineering, Sun Yat-Sen University, Guangzhou 510275, P. R. China
| | - Huiying Xu
- MOE Key Laboratory of Bioinorganic and Synthetic Chemistry/KLGHEI of Environment and Energy Chemistry, School of Chemistry and Chemical Engineering, Sun Yat-Sen University, Guangzhou 510275, P. R. China
| | - Zong-Wan Mao
- MOE Key Laboratory of Bioinorganic and Synthetic Chemistry/KLGHEI of Environment and Energy Chemistry, School of Chemistry and Chemical Engineering, Sun Yat-Sen University, Guangzhou 510275, P. R. China
| | - David Lee Phillips
- Department of Chemistry, The University of Hong Kong, Pokfulam Road, Hong Kong, P. R. China
| | - Cunyuan Zhao
- MOE Key Laboratory of Bioinorganic and Synthetic Chemistry/KLGHEI of Environment and Energy Chemistry, School of Chemistry and Chemical Engineering, Sun Yat-Sen University, Guangzhou 510275, P. R. China
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Lönnberg H. Cleavage of RNA phosphodiester bonds by small molecular entities: a mechanistic insight. Org Biomol Chem 2011; 9:1687-703. [PMID: 21258754 DOI: 10.1039/c0ob00486c] [Citation(s) in RCA: 90] [Impact Index Per Article: 6.9] [Reference Citation Analysis] [Abstract] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Indexed: 02/01/2023]
Abstract
RNA molecules participate in many fundamental cellular processes either as a carrier of genetic information or as a catalyst, and hence, RNA has received increasing interest both as a chemotherapeutic agent and as a target of chemotherapy. In addition the dual nature of RNA has led to the RNA-world concept, i.e. an assumption that the evolution at an early stage of life was based on RNA-like oligomers that were responsible for the storage and transfer of information and as catalysts maintained primitive metabolism. Accordingly, the kinetics and mechanisms of the cleavage of RNA phosphodiester bonds have received interest and it is hoped they will shed light on the mechanisms of enzyme action and on the development of artificial enzymes. The major mechanistic findings concerning the cleavage by small molecules and ions and their significance for the development of efficient and biologically applicable artificial catalysts for RNA hydrolysis are surveyed in the present perspective.
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Affiliation(s)
- Harri Lönnberg
- Department of Chemistry, University of Turku, FIN-20014 Turku, Finland.
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Wu Y, Morton S, Kong X, Nichol GS, Zheng Z. Hydrolytic synthesis and structural characterization of lanthanide-acetylacetonato/hydroxo cluster complexes – A systematic study. Dalton Trans 2011; 40:1041-6. [DOI: 10.1039/c0dt01218a] [Citation(s) in RCA: 46] [Impact Index Per Article: 3.5] [Reference Citation Analysis] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Indexed: 01/10/2023]
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17
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Paluch M, Ślepokura K, Lis T, Lisowski J. Enantiopure trinuclear lanthanide(III) complexes: Cooperative formation of Ln3(μ3-OH)2 core within the macrocycle. INORG CHEM COMMUN 2011. [DOI: 10.1016/j.inoche.2010.09.039] [Citation(s) in RCA: 21] [Impact Index Per Article: 1.6] [Reference Citation Analysis] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Indexed: 10/19/2022]
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19
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Camargo MA, Neves A, Bortoluzzi AJ, Szpoganicz B, Fischer FL, Terenzi H, Serra OA, Santos VG, Vaz BG, Eberlin MN. Efficient Phosphodiester Hydrolysis by Luminescent Terbium(III) and Europium(III) Complexes. Inorg Chem 2010; 49:6013-25. [DOI: 10.1021/ic100549u] [Citation(s) in RCA: 30] [Impact Index Per Article: 2.1] [Reference Citation Analysis] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Indexed: 02/08/2023]
Affiliation(s)
- Maryene A. Camargo
- Laboratório de Bioinorgânica e Crystalografia (LABINC), Departamento de Química
| | - Ademir Neves
- Laboratório de Bioinorgânica e Crystalografia (LABINC), Departamento de Química
| | | | - Bruno Szpoganicz
- Laboratório de Bioinorgânica e Crystalografia (LABINC), Departamento de Química
| | | | - Hernán Terenzi
- Centro de Biologia Molecular Estrutural, Departamento de Bioquímica, CCB
| | - Osvaldo A. Serra
- Laboratório de Terras Raras (FFCLRP-USP), Departamento de Química, Universidade de São Paulo, Avenue Bandeirantes 3900, 14040-901, Ribeirão Preto, São Paulo, Brazil
| | - Vanessa G. Santos
- Laboratório ThoMSon de Espectrometria de Massas, Instituto de Química, Universidade Estadual de Campinas, 13083-970, Campinas, São Paulo, Brazil
| | - Boniek G. Vaz
- Laboratório ThoMSon de Espectrometria de Massas, Instituto de Química, Universidade Estadual de Campinas, 13083-970, Campinas, São Paulo, Brazil
| | - Marcos N. Eberlin
- Laboratório ThoMSon de Espectrometria de Massas, Instituto de Química, Universidade Estadual de Campinas, 13083-970, Campinas, São Paulo, Brazil
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Dang D, Bai Y, He C, Wang J, Duan C, Niu J. Structural and catalytic performance of a polyoxometalate-based metal-organic framework having a lanthanide nanocage as a secondary building block. Inorg Chem 2010; 49:1280-2. [PMID: 20088548 DOI: 10.1021/ic901504q] [Citation(s) in RCA: 89] [Impact Index Per Article: 6.4] [Reference Citation Analysis] [Abstract] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Indexed: 01/15/2023]
Abstract
A polyoxometalate-based lanthanide-organic framework was achieved using the {[Ho(4)(dpdo)(8)(H(2)O)(16)BW(12)O(40)] (H(2)O)(2)}(7+) nanocage as a secondary building block for the heterogeneous catalysis of phosphodiester cleavage in an aqueous solution.
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Affiliation(s)
- Dongbin Dang
- State Key Laboratory of Fine Chemicals, Dalian University of Technology, Dalian 116012, China
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21
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Kulkarni NV, Budagumpi S, Kurdekar GS, Revankar VK, Didagi S. Anticonvulsant Activity and Toxicity Evaluation of Cu II and Zn II Metal Complexes Derived from Triazole-Quinoline Ligands. Chem Pharm Bull (Tokyo) 2010; 58:1569-75. [DOI: 10.1248/cpb.58.1569] [Citation(s) in RCA: 6] [Impact Index Per Article: 0.4] [Reference Citation Analysis] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Indexed: 11/22/2022]
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22
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Greig IR. The analysis of enzymic free energy relationships using kinetic and computational models. Chem Soc Rev 2010; 39:2272-301. [DOI: 10.1039/b902741f] [Citation(s) in RCA: 20] [Impact Index Per Article: 1.4] [Reference Citation Analysis] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Indexed: 01/18/2023]
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23
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Corona-Martínez DO, Taran O, Yatsimirsky AK. Mechanism of general acid–base catalysis in transesterification of an RNA model phosphodiester studied with strongly basic catalysts. Org Biomol Chem 2010; 8:873-80. [DOI: 10.1039/b920398b] [Citation(s) in RCA: 30] [Impact Index Per Article: 2.1] [Reference Citation Analysis] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Indexed: 01/07/2023]
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24
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Fang X, Song H, Xie L, Liu Q, Zhang H, Bai X, Dong B, Wang Y, Han W. Origin of luminescence enhancement and quenching of europium complex in solution phase containing Ag nanoparticles. J Chem Phys 2009; 131:054506. [PMID: 19673573 DOI: 10.1063/1.3193721] [Citation(s) in RCA: 40] [Impact Index Per Article: 2.7] [Reference Citation Analysis] [Abstract] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Indexed: 01/11/2023] Open
Abstract
Luminescence enhancement and quenching of Eu(TTA)(3) x 2 H(2)O complex in DMF (N,N-dimethylformamide) solution containing silver nanoparticles were observed, which depended on the concentrations of both europium complex and silver nanoparticles. Their origins were discussed based on absorption spectra, excitation and emission spectra, and luminescent decay dynamics. The results indicated that when the concentration of Eu complex was high enough, strong interaction among complex molecules occurred. The presence of Ag nanoparticles definitely decreased the interaction among complex molecules. In the solution containing Ag nanoparticles the electronic-dipole transition rate of (5)D(0)-(7)F(2) increased due to enhanced local field surrounding Eu(3+) ions, while the nonradiative transition rate from (5)D(0) decreased owing to decreased resonant energy transfer among europium complex molecules. These two factors lead to the luminescence enhancement of europium complex. As to the luminescent quenching, was attributed to absorption competition between Ag nanoparticles and europium complex at excited wavelength.
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Affiliation(s)
- Xiaona Fang
- State Key Laboratory on Integrated Optoelectronics, College of Electronic Science and Engineering, Jilin University, Changchun 130012, People's Republic of China
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Dinuclear Zn(II) catalysts as biomimics of RNA and DNA phosphoryl transfer enzymes: changing the medium from water to alcohol provides enzyme-like rate enhancements. J PHYS ORG CHEM 2009. [DOI: 10.1002/poc.1584] [Citation(s) in RCA: 51] [Impact Index Per Article: 3.4] [Reference Citation Analysis] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Indexed: 01/07/2023]
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Andolina CM, Holthoff WG, Page PM, Mathews RA, Morrow JR, Bright FV. Spectroscopic system for direct lanthanide photoluminescence spectroscopy with nanomolar detection limits. APPLIED SPECTROSCOPY 2009; 63:483-493. [PMID: 19470203 DOI: 10.1366/000370209788346959] [Citation(s) in RCA: 14] [Impact Index Per Article: 0.9] [Reference Citation Analysis] [Abstract] [Track Full Text] [Subscribe] [Scholar Register] [Indexed: 05/27/2023]
Abstract
A new spectroscopic system for direct photoluminescence of lanthanide ions (Ln(III)) through electronic transitions within the 4f(n) manifold is described. The system is based on an injection seeded frequency tripled (lambda = 355 nm) Nd:YAG pump laser coupled with a master oscillator power oscillator (MOPO). The MOPO delivers an average pulse energy of approximately 60 mJ/pulse, is continuously tunable from 425 to 690 nm (Signal) and 735 to 1800 nm (Idler) with a linewidth of <0.2 cm(-1), and has a pulse duration of 10-12 ns. Aqueous solutions containing two polyaminocarboxylate complexes, ethylenediaminetetraacetic acid (EDTA) and diethylenetriaminepentaacetic acid (DTPA), and Ln(3+) aqua ion for several lanthanides including Eu(III), Tb(III), Dy(III), and Sm(III)) are used as steady-state and time-resolved photoluminescence standards. The versatility of the instrument is demonstrated by excitation scans over a broad visible range for aqueous solutions of complexes of Eu(III), Dy(III), Sm(III), and Tb(III). The Eu(III) excitation band ((7)F(o)-->(5)D(o)) is recorded over a range of complex concentrations that are 1000-fold less than reported previously, including Eu(EDTA) (1.00 nM), Eu(DTPA) (1.00 nM), and Eu(III) aqua ion (50.0 nM). Emission spectra are recorded in the visible range for Ln(III) complexes at pH 6.5 and 1.00 mM. Excited-state lifetimes for the standards were constant as a function of concentration from 10.0 nM to 1.00 mM for Eu(EDTA) and Eu(DTPA) and from 100 nM to 1.00 mM for Eu(III) aqua ion. Photoluminescence lifetimes in H(2)O and D(2)O are recorded and used to calculate the number of bound water molecules for all complexes.
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Affiliation(s)
- Christopher M Andolina
- Department of Chemistry, University at Buffalo, State University of New York, Buffalo, NY 14260-3000, USA
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Chang CA, Wu BH, Hsiao CH. Effects of Concentration of Some Lanthanide(III) Complexes of 1,7-Bis(carboxymethyl)-1,4,7,10-tetraazacyclododecane on Bis(p-nitrophenyl)phosphate Hydrolysis. Eur J Inorg Chem 2009. [DOI: 10.1002/ejic.200801173] [Citation(s) in RCA: 12] [Impact Index Per Article: 0.8] [Reference Citation Analysis] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Indexed: 11/09/2022]
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Chang CA, Chen Y, Hsiao C. Kinetics of Bis(
p
‐nitrophenyl)phosphate (BNPP) Hydrolysis Reactions with Trivalent Lanthanide Complexes of
N
‐Hydroxyethyl(ethylenediamine)‐
N
,
N′
,
N′
‐triacetate (HEDTA). Eur J Inorg Chem 2009. [DOI: 10.1002/ejic.200801038] [Citation(s) in RCA: 6] [Impact Index Per Article: 0.4] [Reference Citation Analysis] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Indexed: 11/08/2022]
Affiliation(s)
- C. Allen Chang
- Department of Biological Science and Technology National Chiao Tung University 75 Po‐Ai Street, Hsinchu, Taiwan 30039, Republic of China, Fax: +886‐3‐5729288
| | - Yu‐Ping Chen
- Department of Biological Science and Technology National Chiao Tung University 75 Po‐Ai Street, Hsinchu, Taiwan 30039, Republic of China, Fax: +886‐3‐5729288
| | - Chih‐Hsiang Hsiao
- Department of Biological Science and Technology National Chiao Tung University 75 Po‐Ai Street, Hsinchu, Taiwan 30039, Republic of China, Fax: +886‐3‐5729288
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Nwe K, Andolina CM, Morrow JR. Tethered Dinuclear Europium(III) Macrocyclic Catalysts for the Cleavage of RNA. J Am Chem Soc 2008; 130:14861-71. [DOI: 10.1021/ja8037799] [Citation(s) in RCA: 70] [Impact Index Per Article: 4.4] [Reference Citation Analysis] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Indexed: 01/10/2023]
Affiliation(s)
- Kido Nwe
- Department of Chemistry, University at Buffalo, State University of New York, Amherst, New York 14260-3000
| | - Christopher M. Andolina
- Department of Chemistry, University at Buffalo, State University of New York, Amherst, New York 14260-3000
| | - Janet R. Morrow
- Department of Chemistry, University at Buffalo, State University of New York, Amherst, New York 14260-3000
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Morrow JR, Amyes TL, Richard JP. Phosphate binding energy and catalysis by small and large molecules. Acc Chem Res 2008; 41:539-48. [PMID: 18293941 DOI: 10.1021/ar7002013] [Citation(s) in RCA: 97] [Impact Index Per Article: 6.1] [Reference Citation Analysis] [Abstract] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Indexed: 11/28/2022]
Abstract
Catalysis is an important process in chemistry and enzymology. The rate acceleration for any catalyzed reaction is the difference between the activation barriers for the uncatalyzed (Delta G(HO)(#)) and catalyzed (Delta G(Me)(#)) reactions, which corresponds to the binding energy (Delta G(S)(#) = Delta G(Me)(#)-Delta G(HO)(#)) for transfer of the reaction transition state from solution to the catalyst. This transition state binding energy is a fundamental descriptor of catalyzed reactions, and its evaluation is necessary for an understanding of any and all catalytic processes. We have evaluated the transition state binding energies obtained from interactions between low molecular weight metal ion complexes or high molecular weight protein catalysts and the phosphate group of bound substrate. Work on catalysis by small molecules is exemplified by studies on the mechanism of action of Zn2(1)(H2O). A binding energy of Delta G(S)(#) = -9.6 kcal/mol was determined for Zn2(1)(H2O)-catalyzed cleavage of the RNA analogue HpPNP. The pH-rate profile for this cleavage reaction showed that there is optimal catalytic activity at high pH, where the catalyst is in the basic form [Zn2(1)(HO-)]. However, it was also shown that the active form of the catalyst is Zn2(1)(H2O) and that this recognizes the C2-oxygen-ionized substrate in the cleavage reaction. The active catalyst Zn2(1)(H2O) shows a high affinity for oxyphosphorane transition state dianions and a stable methyl phosphate transition state analogue, compared with the affinity for phosphate monoanion substrates. The transition state binding energies, Delta G(S)(#), for cleavage of HpPNP catalyzed by a variety of Zn2+ and Eu3+ metal ion complexes reflect the increase in the catalytic activity with increasing total positive charge at the catalyst. These values of Delta G(S)(#) are affected by interactions between the metal ion and its ligands, but these effects are small in comparison with Delta G(S)(#) observed for catalysis by free metal ions, where the ligands are water. Enzymes are unique in having evolved mechanisms to effectively utilize binding interactions with nonreacting fragments of the substrate in stabilization of the reaction transition state. Orotidine 5'-monophosphate decarboxylase, alpha-glycerol phosphate dehydrogenase, and triosephosphate isomerase catalyze dissimilar decarboxylation, hydride transfer, and proton transfer reactions, respectively. Each enzyme derives ca. 12 kcal/mol of transition state stabilization from protein interactions with the nonreacting phosphate group, which is larger than the highest approximately 10 kcal/mol transition state stabilization that we have determined for small-molecule catalysis of phosphate diester cleavage in water. Each of these enzymes catalyze the slow reaction of a truncated substrate that lacks the phosphate group, and in each case, the reaction of the truncated substrate is strongly activated by the allosteric binding of the second substrate "piece" phosphite dianion, HPO3(2-). We propose a modular design for these enzymes with a classical active site that recognizes the reactive substrate fragment and a separate phosphodianion binding site. The second site is created, in part, by flexible protein loops that wrap around the substrate phosphodianion group and bury the substrate in an environment with an optimal local dielectric constant for the catalyzed reaction and with the most favorable positioning of the catalytic side chains. This design is easily generalized to a wide variety of enzyme-catalyzed reactions.
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Affiliation(s)
- Janet R. Morrow
- Department of Chemistry, University at Buffalo, State University of New York, Buffalo, New York 14260-3000
| | - Tina L. Amyes
- Department of Chemistry, University at Buffalo, State University of New York, Buffalo, New York 14260-3000
| | - John P. Richard
- Department of Chemistry, University at Buffalo, State University of New York, Buffalo, New York 14260-3000
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Bunn SE, Liu CT, Lu ZL, Neverov AA, Brown RS. The Dinuclear Zn(II) Complex Catalyzed Cyclization of a Series of 2-Hydroxypropyl Aryl Phosphate RNA Models: Progressive Change in Mechanism from Rate-Limiting P−O Bond Cleavage to Substrate Binding. J Am Chem Soc 2007; 129:16238-48. [DOI: 10.1021/ja076847d] [Citation(s) in RCA: 70] [Impact Index Per Article: 4.1] [Reference Citation Analysis] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Indexed: 01/07/2023]
Affiliation(s)
- Shannon E. Bunn
- Contribution from the Department of Chemistry, Queen's University, Kingston, Ontario, Canada K7L 3N6
| | - C. Tony Liu
- Contribution from the Department of Chemistry, Queen's University, Kingston, Ontario, Canada K7L 3N6
| | - Zhong-Lin Lu
- Contribution from the Department of Chemistry, Queen's University, Kingston, Ontario, Canada K7L 3N6
| | - Alexei A. Neverov
- Contribution from the Department of Chemistry, Queen's University, Kingston, Ontario, Canada K7L 3N6
| | - R. Stan Brown
- Contribution from the Department of Chemistry, Queen's University, Kingston, Ontario, Canada K7L 3N6
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Nwe K, Richard JP, Morrow JR. Direct excitation luminescence spectroscopy of Eu(iii) complexes of 1,4,7-tris(carbamoylmethyl)-1,4,7,10- tetraazacyclododecane derivatives and kinetic studies of their catalytic cleavage of an RNA analog. Dalton Trans 2007:5171-8. [DOI: 10.1039/b710072h] [Citation(s) in RCA: 27] [Impact Index Per Article: 1.6] [Reference Citation Analysis] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Indexed: 11/21/2022]
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