1
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Jayasinghe-Arachchige VM, Serafim LF, Hu Q, Ozen C, Moorkkannur SN, Schenk G, Prabhakar R. Elucidating the Roles of Distinct Chemical Factors in the Hydrolytic Activities of Hetero- and Homonuclear Synthetic Analogues of Binuclear Metalloenzymes. ACS Catal 2023. [DOI: 10.1021/acscatal.2c05758] [Citation(s) in RCA: 0] [Impact Index Per Article: 0] [Reference Citation Analysis] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Indexed: 02/18/2023]
Affiliation(s)
| | - Leonardo F. Serafim
- Department of Chemistry, University of Miami, Coral Gables, Florida 33146, United States
| | - Qiaoyu Hu
- Department of Chemistry, University of Miami, Coral Gables, Florida 33146, United States
| | - Cihan Ozen
- Department of Chemistry, University of Miami, Coral Gables, Florida 33146, United States
| | - Sreerag N. Moorkkannur
- Department of Chemistry, University of Miami, Coral Gables, Florida 33146, United States
| | - Gerhard Schenk
- School of Chemistry and Molecular Biosciences, The University of Queensland, St. Lucia, Brisbane, Queensland 4072, Australia
| | - Rajeev Prabhakar
- Department of Chemistry, University of Miami, Coral Gables, Florida 33146, United States
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2
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Foley W, Arman H, Musie GT. Homodinuclear copper(II) and zinc(II) complexes of a carboxylate-rich ligand as synthetic mimics of phosphoester hydrolase in aqueous solutions. J Inorg Biochem 2021; 225:111589. [PMID: 34530333 DOI: 10.1016/j.jinorgbio.2021.111589] [Citation(s) in RCA: 1] [Impact Index Per Article: 0.3] [Reference Citation Analysis] [Abstract] [Key Words] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Received: 05/07/2021] [Revised: 07/14/2021] [Accepted: 08/18/2021] [Indexed: 11/28/2022]
Abstract
The synthesis, characterization and catalytic activities of two homodinuclear Cu(II) and Zn(II) complexes of a carboxylate-rich ligand, N,N'-Bis[2-carboxybenzomethyl]-N,N' -Bis[carboxymethyl]-1,3-diaminopropan-2-ol (H5ccdp) ligand towards the hydrolysis of (p-nitrophenyl phosphate) (PNPP) and bis(p-nitrophenyl) phosphate (BNPP) substrates in aqueous systems are described. Kinetic investigations were carried out using UV-Vis spectrophotometric techniques at 25 °C and 37 °C and different pH (7-10) conditions. The kinetic studies revealed that the turnover rate (kcat) values among the PNPP hydrolysis systems, the highest and the lowest kcat values were displayed by [Cu2(ccdp)(μ-OAc)]2- at 2.34 × 10-6 s-1 (pH 8 and 37 °C) and 2.13 × 10-8 s-1 (pH 8 and 25 °C), respectively. However, similar comparisons among the BNPP hydrolysis revealed that highest and the lowest kcat values were displayed by [Zn2(ccdp)(μ-OAc)]2- at 4.64 × 10-8 s-1 (pH 9 and 37 °C) and 2.38 × 10-9 (pH 9 and 25 °C). Significantly enough, the catalyst-substrate adduct species containing a metal bound PNPP and BNPP have been detected by ESI-MS techniques. Additionally, a PNPP-bound copper complex has been isolated and crystalized using single crystal X-ray diffraction technique. Based on the structural and activity information obtained in this study, reaction mechanisms for the hydrolysis of PNPP have been proposed.
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Affiliation(s)
- William Foley
- Department of Chemistry, University of Texas at San Antonio, San Antonio, TX 78249, United States
| | - Hadi Arman
- Department of Chemistry, University of Texas at San Antonio, San Antonio, TX 78249, United States
| | - Ghezai T Musie
- Department of Chemistry, University of Texas at San Antonio, San Antonio, TX 78249, United States.
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3
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A de novo binuclear zinc enzyme with DNA cleavage activity. J Biol Inorg Chem 2021; 26:161-167. [PMID: 33469708 DOI: 10.1007/s00775-020-01845-5] [Citation(s) in RCA: 1] [Impact Index Per Article: 0.3] [Reference Citation Analysis] [Abstract] [Key Words] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Received: 11/19/2020] [Accepted: 12/16/2020] [Indexed: 12/15/2022]
Abstract
Metallohydrolases are broadly used throughout biology, often to catalyze the degradation of macromolecules such as DNA and proteins. Many of these enzymes function with zinc in their active site, and an important subset of these enzymes utilize a binuclear zinc active site. Mimics of these enzymes have been developed, some of which catalyze the digestion of DNA. However, the majority of the mimics that utilize zinc are small molecules, and most are mononuclear. Herein, we report DNA cleavage activity by the de novo designed Due Ferri single-chain (DFsc) protein containing a binuclear zinc active site. This binuclear zinc-protein complex is able to digest plasmid DNA at rates up to 50 ng/h, and these cleavage rates are affected by changes to amino acid residues near the zinc-binding site. These results indicate that the DFsc scaffold is a good model system to carry out careful structure-function relationship studies to understand key structural features that influence reactivity in natural binuclear zinc hydrolases, as it is the first report of a binuclear model system in a protein scaffold.
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4
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Paredes A, Loh BM, Peduzzi OM, Reig AJ, Buettner KM. DNA Cleavage by a De Novo Designed Protein-Titanium Complex. Inorg Chem 2020; 59:11248-11252. [PMID: 32799485 DOI: 10.1021/acs.inorgchem.0c01707] [Citation(s) in RCA: 2] [Impact Index Per Article: 0.5] [Reference Citation Analysis] [Abstract] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Indexed: 02/06/2023]
Abstract
Titanium is one of the most abundant elements on Earth but is commonly thought to have no role in biology because of its propensity to hydrolyze. Nature stabilizes hard Lewis acidic metals from hydrolysis using a variety of mechanisms, providing inspiration for how titanium can be stabilized using biological ligands. The well-characterized Due Ferri single-chain (DFsc) de novo designed protein was developed to bind and stabilize iron and provides a binding site with hard Lewis basic residues able to bind two metal ions. We demonstrate that the DFsc scaffold stably binds 2 equiv of titanium and protects them from unwanted hydrolysis. The Ti4+-DFsc protein complex was tested for its ability to hydrolytically cleave DNA, where it was seen to linearize plasmid DNA in an overnight reaction. Ti4+-DFsc is thus the first example of a functional, soluble titanium-protein complex.
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Affiliation(s)
- Alexander Paredes
- Department of Chemistry, Gettysburg College, Gettysburg, Pennsylvania 17325, United States
| | - Brittany M Loh
- Department of Chemistry, Gettysburg College, Gettysburg, Pennsylvania 17325, United States
| | - Olivia M Peduzzi
- Department of Chemistry, Gettysburg College, Gettysburg, Pennsylvania 17325, United States
| | - Amanda J Reig
- Department of Chemistry, Ursinus College, Collegeville, Pennsylvania 19426, United States
| | - Katherine M Buettner
- Department of Chemistry, Gettysburg College, Gettysburg, Pennsylvania 17325, United States
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5
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Velugula K, Kumar A, Chinta JP. Nuclease and anticancer activity of antioxidant conjugated terpyridine metal complexes. Inorganica Chim Acta 2020. [DOI: 10.1016/j.ica.2020.119596] [Citation(s) in RCA: 5] [Impact Index Per Article: 1.3] [Reference Citation Analysis] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Indexed: 01/01/2023]
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6
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Conti L, Giorgi C, Valtancoli B, Paoli P, Rossi P, Marchionni A, Faggi E, Bencini A. Switching on the Fluorescence Emission of Polypyridine Ligands by Simultaneous Zinc(II) Binding and Protonation. Chempluschem 2020; 85:659-671. [PMID: 32237220 DOI: 10.1002/cplu.201900752] [Citation(s) in RCA: 6] [Impact Index Per Article: 1.5] [Reference Citation Analysis] [Abstract] [Key Words] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Received: 12/23/2019] [Revised: 03/11/2020] [Indexed: 11/07/2022]
Abstract
The synthesis and characterization of the two new open-chain ligands 1,15-bis-[6-(2,2'-bipyridyl)]-2,5,8,11,14-pentaaza-octadecane (L1) and 1,15-bis-[2-(1,10-phenanthroline)-9-methyl]-2,5,8,11,14-pentaazaoctadecane (L2), both featuring a tetraethylenpentaamine chain linking via methylene bridges the 6 and 2 positions of two identical 2,2'-bipyridyl (bpy) and 9-methyl-1,10-phenanthroline (9-methyl-phen) moieties respectively, are reported. Their protonation and binding ability for Cu2+ , Zn2+ , Cd2+ and Pb2+ have been studied by coupling potentiometric titrations with UV-vis absorption and fluorescence emission measurements in water. L1 and L2 afford stable mono- and dinuclear complexes, in which the metal ion is bound by a single bpy or 9-methyl-phen unit and the amine groups on the aliphatic chain. However, L1 displays a greater binding ability for Cu2+ and Zn2+ with respect to L2, the stability constants of the [ML1]2+ complexes being 21.8 (Cu2+ ) and 19.4 (Zn2+ ) log units vs 20.34 and 16.8 log. units for the corresponding L2 species. Among all the metal ions tested, only the Zn2+ complex with L2 features an enhanced fluorescence emission at neutral pH, thanks to the simultaneous binding of one Zn2+ ion and H+ ion(s), that inhibits any possible photoinduced electron transfer (PET) process from the amine donors to the excited phen moiety. Binding of a second metal switches off the emission again.
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Affiliation(s)
- Luca Conti
- Department of Chemistry "Ugo Schiff", University of Florence, Via della Lastruccia 3, 50019, Sesto Fiorentino, Italy
| | - Claudia Giorgi
- Department of Chemistry "Ugo Schiff", University of Florence, Via della Lastruccia 3, 50019, Sesto Fiorentino, Italy
| | - Barbara Valtancoli
- Department of Chemistry "Ugo Schiff", University of Florence, Via della Lastruccia 3, 50019, Sesto Fiorentino, Italy
| | - Paola Paoli
- Department of Industrial Engineering, University of Florence, Via S. Marta 3, Florence, 50139, Italy
| | - Patrizia Rossi
- Department of Industrial Engineering, University of Florence, Via S. Marta 3, Florence, 50139, Italy
| | - Andrea Marchionni
- Istituto di Chimica dei Composti OrganoMetallici (ICCOM_CNR), Via Madonna del Piano 10, 50019, Sesto Fiorentino (FI), Italy
| | - Enrico Faggi
- Department of Chemistry "Ugo Schiff", University of Florence, Via della Lastruccia 3, 50019, Sesto Fiorentino, Italy
| | - Andrea Bencini
- Department of Chemistry "Ugo Schiff", University of Florence, Via della Lastruccia 3, 50019, Sesto Fiorentino, Italy
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7
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Zehra S, Tabassum S, Al-Lohedan HA, Arjmand F. A zwitterionic Zn(II) benzothiazole nanohybrid conjugate as hydrolytic DNA cleavage agent. INORG CHEM COMMUN 2018. [DOI: 10.1016/j.inoche.2018.05.008] [Citation(s) in RCA: 8] [Impact Index Per Article: 1.3] [Reference Citation Analysis] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Indexed: 01/13/2023]
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8
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Chang CA, Lee HY, Lin SL, Meng CN, Wu TT. Dinuclear Lanthanide(III)-m-ODO2A-dimer Macrocyclic Complexes: Solution Speciation, DFT Calculations, Luminescence Properties, and Promoted Nitrophenyl-Phosphate Hydrolysis Rates. Chemistry 2018; 24:6442-6457. [PMID: 29479746 DOI: 10.1002/chem.201800037] [Citation(s) in RCA: 5] [Impact Index Per Article: 0.8] [Reference Citation Analysis] [Abstract] [Key Words] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Received: 01/04/2018] [Indexed: 12/24/2022]
Abstract
Potentiometric speciation studies, mass spectrometry, and DFT calculations helped to predict the various structural possibilities of the dinuclear trivalent lanthanide ion (LnIII , Ln=La, Eu, Tb, Yb, Y) complexes of a novel macrocyclic ligand, m-ODO2A-dimer (H4 L), to correlate with their luminescence properties and the promoted BNPP and HPNP phosphodiester bond hydrolysis reaction rates. The stability constants of the dinuclear Ln2 (m-ODO2A-dimer) complexes and various hydrolytic species confirmed by mass spectrometry were determined. DFT calculations revealed that the Y2 LH-1 and the Y2 LH-2 species tended to form structures with the respective closed- and open-form conformations. Luminescence lifetime data for the heterodimetallic TbEuL system confirmed the fluorescence resonance energy transfer from the TbIII to EuIII ion. The internuclear distance RTbEu values were estimated to be in the range of 9.4-11.3 Å (pH 6.7-10.6), which were comparable to those of the DFT calculated open-form conformations. Multiple linear regression analysis of the kobs data was performed using the equation: kobs,corr. =kobs -kobs,OH =kLn2LHM->1 [Ln2 LH-1 ]+kLn2LH-2 [Ln2 LH-2 ] for the observed Ln2 L-promoted BNPP/HPNP hydrolysis reactions in solution pH from 7 to 10.5 (Ln=Eu, Yb). The results showed that the second-order rate constants for the Eu2 LH-2 and Yb2 LH-2 species were about 50-400 times more reactive than the structural analogous Zn2 (m-12 N3 O-dimer) system.
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Affiliation(s)
- C Allen Chang
- Department of Biomedical Imaging and Radiological Sciences, National Yang-Ming University, No. 155, Sec. 2, Li-Nong St., Beitou, Taipei, Taiwan), 112, Republic of China.,Department of Biotechnology and Laboratory Science in Medicine, National Yang-Ming University, No. 155, Sec. 2, Li-Nong Street, Taipei, 112, Taiwan, Republic of China.,Molecular Imaging Research Center (MIRC), National Yang-Ming University, Taipei, 112, Taiwan, Republic of China.,Department of Biological Science and Technology, National Chiao Tung University, No. 75 Po-Ai Street, Hsinchu, Taiwan, 30039, Republic of China
| | - Hwa-Yu Lee
- Department of Biomedical Imaging and Radiological Sciences, National Yang-Ming University, No. 155, Sec. 2, Li-Nong St., Beitou, Taipei, Taiwan), 112, Republic of China
| | - Syue-Liang Lin
- Department of Biotechnology and Laboratory Science in Medicine, National Yang-Ming University, No. 155, Sec. 2, Li-Nong Street, Taipei, 112, Taiwan, Republic of China
| | - Ching-Ning Meng
- Department of Biomedical Imaging and Radiological Sciences, National Yang-Ming University, No. 155, Sec. 2, Li-Nong St., Beitou, Taipei, Taiwan), 112, Republic of China
| | - Tsung-Ta Wu
- Department of Biological Science and Technology, National Chiao Tung University, No. 75 Po-Ai Street, Hsinchu, Taiwan, 30039, Republic of China
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9
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Joshi P, Hussain N, Ali SR, Rishu R, Bhardwaj VK. Enhanced activity of trinuclear Zn(ii) complexes towards phosphate ester bond cleavage by introducing three-metal cooperativity. NEW J CHEM 2018. [DOI: 10.1039/c7nj03759g] [Citation(s) in RCA: 8] [Impact Index Per Article: 1.3] [Reference Citation Analysis] [Abstract] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Indexed: 12/18/2022]
Abstract
The catalytic efficiency (DNA binding followed by phosphate ester bond cleavage) of Zn(ii) complexes has been tuned by variation in the nuclearity, flexibility and coordination environment to explore the structure activity correlation.
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Affiliation(s)
- Pooja Joshi
- Department of Chemistry
- D.S.B. Campus
- Kumaun University
- Nainital
- India
| | - Navid Hussain
- Department of Chemistry
- Indian Institute of Technology Ropar
- Rupnagar
- India
| | - Shah Raj Ali
- Department of Chemistry
- D.S.B. Campus
- Kumaun University
- Nainital
- India
| | - Rishu Rishu
- Department of Chemistry
- MCM DAV College for Women
- Chandigarh-160036
- India
| | - Vimal K. Bhardwaj
- Department of Chemistry
- Indian Institute of Technology Ropar
- Rupnagar
- India
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10
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Diez-Castellnou M, Martinez A, Mancin F. Phosphate Ester Hydrolysis: The Path From Mechanistic Investigation to the Realization of Artificial Enzymes. ADVANCES IN PHYSICAL ORGANIC CHEMISTRY 2017. [DOI: 10.1016/bs.apoc.2017.09.003] [Citation(s) in RCA: 6] [Impact Index Per Article: 0.9] [Reference Citation Analysis] [Track Full Text] [Subscribe] [Scholar Register] [Indexed: 12/12/2022]
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11
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Brown JJ, Gahan LR, Schöffler A, Krenske EH, Schenk G. Investigation of the identity of the nucleophile initiating the hydrolysis of phosphate esters catalyzed by dinuclear mimics of metallohydrolases. J Inorg Biochem 2016; 162:356-365. [DOI: 10.1016/j.jinorgbio.2016.02.008] [Citation(s) in RCA: 6] [Impact Index Per Article: 0.8] [Reference Citation Analysis] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Received: 10/09/2015] [Revised: 01/17/2016] [Accepted: 02/10/2016] [Indexed: 11/17/2022]
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12
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Current and future potential of metallo drugs: Revisiting DNA-binding of metal containing molecules and their diverse mechanism of action. Inorganica Chim Acta 2016. [DOI: 10.1016/j.ica.2016.01.006] [Citation(s) in RCA: 67] [Impact Index Per Article: 8.4] [Reference Citation Analysis] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Indexed: 01/14/2023]
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13
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Chang CA, Wu TT, Lee HY. Hydrolysis and DFT structural studies of dinuclear Zn(II) and Cu(II) macrocyclic complexes of m-12N3O-dimer and the effect of pH on their promoted HPNP hydrolysis rates. J COORD CHEM 2016. [DOI: 10.1080/00958972.2016.1157177] [Citation(s) in RCA: 1] [Impact Index Per Article: 0.1] [Reference Citation Analysis] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Indexed: 10/22/2022]
Affiliation(s)
- C. Allen Chang
- Department of Biomedical Imaging and Radiological Sciences, National Yang-Ming University, Taipei, Taiwan, R.O.C
- Department of Biological Science and Technology, National Chiao Tung University, Hsinchu, Taiwan, R.O.C
- Biophotonics & Molecular Imaging Research Center (BMIRC), National Yang-Ming University, Taipei, Taiwan, R.O.C
- Biomedical Engineering Research and Development Center (BERDC), National Yang-Ming University, Taipei, Taiwan, R.O.C
| | - Tsung-Ta Wu
- Department of Biological Science and Technology, National Chiao Tung University, Hsinchu, Taiwan, R.O.C
| | - Hwa-Yu Lee
- Department of Biomedical Imaging and Radiological Sciences, National Yang-Ming University, Taipei, Taiwan, R.O.C
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14
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Sanyal R, Chakraborty P, Zangrando E, Das D. Phosphatase models: Synthesis, structure and catalytic activity of zinc complexes derived from a phenolic Mannich-base ligand. Polyhedron 2015. [DOI: 10.1016/j.poly.2015.05.013] [Citation(s) in RCA: 16] [Impact Index Per Article: 1.8] [Reference Citation Analysis] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Indexed: 11/28/2022]
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15
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Salvio R, Volpi S, Cacciapaglia R, Casnati A, Mandolini L, Sansone F. Ribonuclease Activity of an Artificial Catalyst That Combines a Ligated CuII Ion and a Guanidinium Group at the Upper Rim of a cone-Calix[4]arene Platform. J Org Chem 2015; 80:5887-93. [DOI: 10.1021/acs.joc.5b00965] [Citation(s) in RCA: 31] [Impact Index Per Article: 3.4] [Reference Citation Analysis] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Indexed: 12/23/2022]
Affiliation(s)
- Riccardo Salvio
- Dipartimento
di Chimica and IMC−CNR Sezione Meccanismi di Reazione, Università La Sapienza, 00185 Roma, Italy
| | - Stefano Volpi
- Dipartimento
di Chimica, Università degli Studi di Parma, Viale delle
Scienze 17/A, 43124 Parma, Italy
| | - Roberta Cacciapaglia
- Dipartimento
di Chimica and IMC−CNR Sezione Meccanismi di Reazione, Università La Sapienza, 00185 Roma, Italy
| | - Alessandro Casnati
- Dipartimento
di Chimica, Università degli Studi di Parma, Viale delle
Scienze 17/A, 43124 Parma, Italy
| | - Luigi Mandolini
- Dipartimento
di Chimica and IMC−CNR Sezione Meccanismi di Reazione, Università La Sapienza, 00185 Roma, Italy
| | - Francesco Sansone
- Dipartimento
di Chimica, Università degli Studi di Parma, Viale delle
Scienze 17/A, 43124 Parma, Italy
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16
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Salvio R. The guanidinium unit in the catalysis of phosphoryl transfer reactions: from molecular spacers to nanostructured supports. Chemistry 2015; 21:10960-71. [PMID: 25940903 DOI: 10.1002/chem.201500789] [Citation(s) in RCA: 32] [Impact Index Per Article: 3.6] [Reference Citation Analysis] [Abstract] [Key Words] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Indexed: 12/19/2022]
Abstract
Examples of guanidinium-based artificial phosphodiesterases are illustrated in this review article. A wide set of collected catalytic systems are presented, from the early examples to the most recent developments of the use of this unit in the design of supramolecular catalysts. Special attention is dedicated to illustrate the operating catalytic mechanism and the role of guanidine/ium units in the catalysis. One or more of these units can act by themselves or in conjunction with other active units. The analogy with the mechanism of enzymatic systems is presented and discussed. In the last part of this overview, recent examples of guanidinophosphodiesterases based on nanostructured supports are reported, namely gold-monolayer-protected clusters and polymer brushes grafted to silica nanoparticles. The issue of the dependence of the catalytic performance on the preorganization of the spacer is tackled and discussed in terms of effective molarity, a parameter that can be taken as a quantitative measurement of this preorganization for both conventional molecular linker and nanosized supports.
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Affiliation(s)
- Riccardo Salvio
- Dipartimento di Chimica and IMC-CNR, Sezione Meccanismi di Reazione, La Sapienza Università di Roma, Piazzale Aldo Moro 5, 00185 (Italy).
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17
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Savelli C, Salvio R. Guanidine-Based Polymer Brushes Grafted onto Silica Nanoparticles as Efficient Artificial Phosphodiesterases. Chemistry 2015; 21:5856-63. [DOI: 10.1002/chem.201406526] [Citation(s) in RCA: 23] [Impact Index Per Article: 2.6] [Reference Citation Analysis] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Received: 12/17/2014] [Indexed: 12/20/2022]
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18
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Zhang X, Zheng X, Phillips DL, Zhao C. Mechanistic investigation of the cleavage of phosphodiester catalyzed by a symmetrical oxyimine-based macrocyclic dinuclear zinc complex: a DFT study. Dalton Trans 2014; 43:16289-99. [DOI: 10.1039/c4dt01491j] [Citation(s) in RCA: 12] [Impact Index Per Article: 1.2] [Reference Citation Analysis] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Indexed: 12/31/2022]
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19
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Farrokhpour H, Hadadzadeh H, Darabi F, Abyar F, Rudbari HA, Ahmadi-Bagheri T. A rare dihydroxo copper(ii) complex with ciprofloxacin; a combined experimental and ONIOM computational study of the interaction of the complex with DNA and BSA. RSC Adv 2014. [DOI: 10.1039/c4ra04634j] [Citation(s) in RCA: 31] [Impact Index Per Article: 3.1] [Reference Citation Analysis] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Indexed: 01/09/2023] Open
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20
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Sanyal R, Dash SK, Das S, Chattopadhyay S, Roy S, Das D. Catecholase activity, DNA cleavage and cytotoxicity of six Zn(II) complexes synthesized from designed Mannich ligands: higher reactivity of mononuclear over dinuclear. J Biol Inorg Chem 2014; 19:1099-111. [DOI: 10.1007/s00775-014-1148-z] [Citation(s) in RCA: 24] [Impact Index Per Article: 2.4] [Reference Citation Analysis] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Received: 01/14/2014] [Accepted: 05/17/2014] [Indexed: 10/25/2022]
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21
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22
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Zhang X, Zhu Y, Zheng X, Phillips DL, Zhao C. Mechanismic Investigation on the Cleavage of Phosphate Monoester Catalyzed by Unsymmetrical Macrocyclic Dinuclear Complexes: The Selection of Metal Centers and the Intrinsic Flexibility of the Ligand. Inorg Chem 2014; 53:3354-61. [DOI: 10.1021/ic402717x] [Citation(s) in RCA: 27] [Impact Index Per Article: 2.7] [Reference Citation Analysis] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Indexed: 12/22/2022]
Affiliation(s)
- Xuepeng Zhang
- MOE Key Laboratory of Bioinorganic and Synthetic Chemistry/KLGHEI
of Environment and Energy Chemistry, School of Chemistry and Chemical
Engineering, Sun Yat-Sen University, Guangzhou 510275, People’s Republic of China
| | - Yajie Zhu
- MOE Key Laboratory of Bioinorganic and Synthetic Chemistry/KLGHEI
of Environment and Energy Chemistry, School of Chemistry and Chemical
Engineering, Sun Yat-Sen University, Guangzhou 510275, People’s Republic of China
| | - Xiaowei Zheng
- MOE Key Laboratory of Bioinorganic and Synthetic Chemistry/KLGHEI
of Environment and Energy Chemistry, School of Chemistry and Chemical
Engineering, Sun Yat-Sen University, Guangzhou 510275, People’s Republic of China
| | - David Lee Phillips
- Department
of Chemistry, The University of Hong Kong, Pokfulam Road, Hong Kong, People’s Republic of China
| | - Cunyuan Zhao
- MOE Key Laboratory of Bioinorganic and Synthetic Chemistry/KLGHEI
of Environment and Energy Chemistry, School of Chemistry and Chemical
Engineering, Sun Yat-Sen University, Guangzhou 510275, People’s Republic of China
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23
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Salvio R, Cincotti A. Guanidine based self-assembled monolayers on Au nanoparticles as artificial phosphodiesterases. RSC Adv 2014. [DOI: 10.1039/c4ra03150d] [Citation(s) in RCA: 26] [Impact Index Per Article: 2.6] [Reference Citation Analysis] [Abstract] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Indexed: 12/20/2022] Open
Abstract
Gold nanoparticles passivated with a catalytic monolayer based on guanidine exhibit high cooperativity and efficiency in the cleavage of phosphodiesters.
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Affiliation(s)
- Riccardo Salvio
- Dipartimento di Chimica and IMC – CNR Sezione Meccanismi di Reazione
- Università La Sapienza
- 00185 Roma, Italy
| | - Antonio Cincotti
- Dipartimento di Chimica and IMC – CNR Sezione Meccanismi di Reazione
- Università La Sapienza
- 00185 Roma, Italy
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24
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Singh R, Afzal M, Zaki M, Ahmad M, Tabassum S, Bharadwaj PK. Synthesis, structure elucidation and DFT studies of a new coumarin-derived Zn( ii) complex: in vitro DNA/HSA binding profile and pBR322 cleavage pathway. RSC Adv 2014; 4:43504-43515. [DOI: 10.1039/c4ra05637j] [Citation(s) in RCA: 8] [Impact Index Per Article: 0.8] [Reference Citation Analysis] [Abstract] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Indexed: 09/12/2023] Open
Abstract
A new mononuclear coumarin-derived Zn(ii) complex was designed and synthesized, and its interactions with DNA and protein were analyzed.
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Affiliation(s)
- Ruchi Singh
- Department of Chemistry
- Indian Institute of Technology Kanpur
- , India
| | - Mohd. Afzal
- Department of Chemistry
- Aligarh Muslim University
- , India
| | - Mehvash Zaki
- Department of Chemistry
- Aligarh Muslim University
- , India
| | - Musheer Ahmad
- Department of Chemistry
- Indian Institute of Technology Kanpur
- , India
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25
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Salvio R, Cacciapaglia R, Mandolini L, Sansone F, Casnati A. Diguanidinocalix[4]arenes as effective and selective catalysts of the cleavage of diribonucleoside monophosphates. RSC Adv 2014. [DOI: 10.1039/c4ra05751a] [Citation(s) in RCA: 21] [Impact Index Per Article: 2.1] [Reference Citation Analysis] [Abstract] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Indexed: 11/21/2022] Open
Abstract
Upper rim diguanidino-cone-calix[4]arenes catalyze the hydrolytic cleavage of diribonucleoside monophosphates in aqueous DMSO with good substrate selectivity and rate accelerations approaching 105-fold in the most favourable substrate-catalyst combinations.
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Affiliation(s)
- Riccardo Salvio
- Dipartimento di Chimica and IMC – CNR Sezione Meccanismi di Reazione
- Università La Sapienza
- 00185 Roma, Italy
| | - Roberta Cacciapaglia
- Dipartimento di Chimica and IMC – CNR Sezione Meccanismi di Reazione
- Università La Sapienza
- 00185 Roma, Italy
| | - Luigi Mandolini
- Dipartimento di Chimica and IMC – CNR Sezione Meccanismi di Reazione
- Università La Sapienza
- 00185 Roma, Italy
| | - Francesco Sansone
- Dipartimento di Chimica
- Università degli Studi di Parma
- 43124 Parma, Italy
| | - Alessandro Casnati
- Dipartimento di Chimica
- Università degli Studi di Parma
- 43124 Parma, Italy
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26
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Hernández-Gil J, Ferrer S, Castiñeiras A, Liu-González M, Lloret F, Ribes Á, Čoga L, Bernecker A, Mareque-Rivas JC. Two Novel Ternary Dicopper(II) μ-Guanazole Complexes with Aromatic Amines Strongly Activated by Quantum Dots for DNA Cleavage. Inorg Chem 2013; 53:578-93. [DOI: 10.1021/ic4027249] [Citation(s) in RCA: 19] [Impact Index Per Article: 1.7] [Reference Citation Analysis] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Indexed: 12/28/2022]
Affiliation(s)
- Javier Hernández-Gil
- Departament
de Química Inorgànica, Universitat de València, Vicent Andrés
Estellés s/n, 46100 Burjassot,
Valencia, Spain
| | - Sacramento Ferrer
- Departament
de Química Inorgànica, Universitat de València, Vicent Andrés
Estellés s/n, 46100 Burjassot,
Valencia, Spain
| | - Alfonso Castiñeiras
- Departamento
de Química Inorgánica, Universidad de Santiago de Compostela, Campus Universitario
Sur, E-15782 Santiago de Compostela, Spain
| | - Malva Liu-González
- S.C.S.I.E., Universitat de València, Dr.
Moliner 50, 46100 Burjassot, Valencia, Spain
| | - Francesc Lloret
- Institut
de Ciència Molecular, Universitat de València, Catedràtic
José Beltrán n° 2, 46980 Paterna, Valencia, Spain
| | - Ángela Ribes
- Departament
de Química Inorgànica, Universitat de València, Vicent Andrés
Estellés s/n, 46100 Burjassot,
Valencia, Spain
| | - Lucija Čoga
- Departament
de Química Inorgànica, Universitat de València, Vicent Andrés
Estellés s/n, 46100 Burjassot,
Valencia, Spain
| | - Anja Bernecker
- Cooperative Centre for Research in Biomaterials (CIC biomaGUNE), 20009 San Sebastián, Spain
| | - Juan C. Mareque-Rivas
- Cooperative Centre for Research in Biomaterials (CIC biomaGUNE), 20009 San Sebastián, Spain
- IKERBASQUE, Basque Foundation for Science, 48011 Bilbao, Spain
- Departmento
de Bioquimica y Biologia Molecular, Universidad del Pais Vasco, 48940 Leioa, Spain
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27
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Lee SK, Tan KW, Ng SW, Ooi KK, Ang KP, Abdah MA. Zinc (II) complex with a cationic Schiff base ligand: synthesis, characterization, and biological studies. SPECTROCHIMICA ACTA. PART A, MOLECULAR AND BIOMOLECULAR SPECTROSCOPY 2013; 121:101-108. [PMID: 24231745 DOI: 10.1016/j.saa.2013.10.084] [Citation(s) in RCA: 12] [Impact Index Per Article: 1.1] [Reference Citation Analysis] [Abstract] [Key Words] [MESH Headings] [Track Full Text] [Subscribe] [Scholar Register] [Received: 05/07/2013] [Revised: 09/20/2013] [Accepted: 10/15/2013] [Indexed: 06/02/2023]
Abstract
A cationic Schiff base ligand, TSB (L) and its Zn (II) complex (1) were synthesized and characterized by using CHN, (1)H-NMR, FT-IR, UV, LC-MS, and X-ray methods. Their ability to inhibit topoisomerase I, DNA cleavage activities, and cytotoxicity were studied. X-ray diffraction study shows that the mononuclear complex 1 is four coordinated with distorted tetrahedral geometry. The singly deprotonated Schiff base ligand L acts as a bidentate ON-donor ligand. Complexation of L increases the inhibitory strength on topoisomerase I activity. Complex 1 could fully inhibit topoisomerase I activity at 250 μM, while L did not show any inhibitory effect on topoisomerase I activity. In addition, L and complex 1 could cleave pBR322 DNA in a concentration and time dependent profile. Surprisingly, L has better DNA cleavage activity than complex 1. The cleavage of DNA by complex 1 is altered in the presence of hydrogen peroxide. Furthermore, L and complex 1 are mildly cytotoxic towards human ovarian cancer A2780 and hepatocellular carcinoma HepG2.
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Affiliation(s)
- Sze Koon Lee
- Department of Chemistry, University of Malaya, 50603 Kuala Lumpur, Malaysia
| | - Kong Wai Tan
- Department of Chemistry, University of Malaya, 50603 Kuala Lumpur, Malaysia.
| | - Seik Weng Ng
- Department of Chemistry, University of Malaya, 50603 Kuala Lumpur, Malaysia; Chemistry Department, Faculty of Science, King Abdulaziz University, P.O. Box 80203, Jeddah, Saudi Arabia
| | - Kah Kooi Ooi
- Department of Biomedical Sciences, Universiti Putra Malaysia, 43400 Serdang, Malaysia
| | - Kok Pian Ang
- Department of Biomedical Sciences, Universiti Putra Malaysia, 43400 Serdang, Malaysia
| | - Md Akim Abdah
- Department of Biomedical Sciences, Universiti Putra Malaysia, 43400 Serdang, Malaysia
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Salvio R, Mandolini L, Savelli C. Guanidine-guanidinium cooperation in bifunctional artificial phosphodiesterases based on diphenylmethane spacers; gem-dialkyl effect on catalytic efficiency. J Org Chem 2013; 78:7259-63. [PMID: 23772969 DOI: 10.1021/jo401085z] [Citation(s) in RCA: 31] [Impact Index Per Article: 2.8] [Reference Citation Analysis] [Abstract] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Indexed: 01/11/2023]
Abstract
Diphenylmethane derivatives 1-3, decorated with two guanidine units, are effective catalysts of HPNP transesterification. Substitution of the methylene group of the parent diphenylmethane spacer with cyclohexylidene and adamantylidene moieties enhances catalytic efficency, with gem-dialkyl effect accelerations of 4.5 and 9.1, respectively. Activation parameters and DFT calculations of the rotational barriers around the C-Ar bonds indicate that a major contribution to the driving force for enhanced catalysis is entropic in nature.
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Affiliation(s)
- Riccardo Salvio
- Dipartimento di Chimica and IMC-CNR Sezione Meccanismi di Reazione, Università La Sapienza, P.le Aldo Moro 5, 00185 Roma, Italy.
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29
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Mitra M, Singh R, Pyrkosz-Bulska M, Haukka M, Gumienna-Kontecka E, Nordlander E. A Bis(μ-phenoxo)-Bridged Dizinc Complex with Hydrolytic Activity. Z Anorg Allg Chem 2013. [DOI: 10.1002/zaac.201300160] [Citation(s) in RCA: 8] [Impact Index Per Article: 0.7] [Reference Citation Analysis] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Indexed: 12/22/2022]
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30
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Nakai M, Fukuda H, Yano S, Nakabayashi Y. Synthesis of glucopyranosyl Schiff base zinc(II) complexes capable of interacting with mononucleotides, and their DNA-cleavage activities. Chem Biodivers 2013; 9:1942-54. [PMID: 22976982 DOI: 10.1002/cbdv.201100441] [Citation(s) in RCA: 2] [Impact Index Per Article: 0.2] [Reference Citation Analysis] [Abstract] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Indexed: 11/06/2022]
Abstract
New glucopyranosyl Schiff base zinc complexes, [Zn(GlcSal)(2) ] (1; GlcSalH=N-(2-deoxy-β-D-glucopyranos-2-yl-salicylaldimine) and [Zn(AcOGlcSal)(2) ] (2; AcOGlcSalH=N-(2-deoxy-β-D-1,3,4,6-tetraacetylglucopyranos-2-yl-salicylaldimine) were synthesized, and characterized by spectral and analytical methods. The interaction between the Zn complexes and mononucleotides was investigated by (1)H-NMR, (31)P-NMR and UV/VIS spectroscopies. Mononucleotides, cytidine 5'-monophosphate (CMP) and uridyl 5'-monophosphate (UMP), interacted with these complexes to form a 1:1 complex with 1 and a 1:2 complex with 2, depending on the presence of the OH group of glucopyranosyl substituents. The DNA-cleavage activities of 1 and 2 were studied using plasmid DNA (pBR322) in a medium of 5 mM Tris·HCl/50 mM NaCl buffer in the presence of H(2)O(2). The DNA-cleavage activity decreased in the order of 2>1>Zn(OAc)(2), indicating the significant promoting effect of the glucopyranosyl Schiff base ligand and the participation of the glucopyranosyl OH groups in the cleavage mechanism. The mechanism of the DNA cleavage by 1 and 2 was investigated by evaluation of the effect of a HO· radical scavenger and a singlet-oxygen ((1)O(2)) quencher under aerobic conditions. The former exhibited little effect, excluding the HO· radical as an active species and supporting the hydrolysis mechanism for the main process of the DNA cleavage. The latter quencher somewhat hindered the cleavage, indicating the partial participation of a (1)O(2) as a competitive active species in the present system.
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Affiliation(s)
- Misaki Nakai
- Department of Chemistry and Materials Engineering, Faculty of Chemistry, Materials and Bioengineering, Kansai University, 3-3-35, Yamatecho, Suita-shi, Osaka, 564-8680, Japan.
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31
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Abstract
The development of synthetic agents able to hydrolytically cleave DNA with high efficiency and selectivity is still a fascinating challenge. Over the years, many examples have been reported reproducing part of the behaviour of the corresponding natural enzymes. Eventually, even the possibility to apply such systems to the manipulation of DNA of higher organisms has been demonstrated. However, efficiency of enzymes is still unrivalled. This feature article discusses the progress reported toward the realization of synthetic nucleases with particular attention to the comprehension of the reaction mechanisms and to the strategies that need to be addressed to obtain more efficient systems.
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Affiliation(s)
- Fabrizio Mancin
- Dipartimento di Scienze Chimiche, Università di Padova, via Marzolo 1, I -35131 Padova, Italy.
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32
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Baldini L, Cacciapaglia R, Casnati A, Mandolini L, Salvio R, Sansone F, Ungaro R. Upper rim guanidinocalix[4]arenes as artificial phosphodiesterases. J Org Chem 2012; 77:3381-9. [PMID: 22364173 DOI: 10.1021/jo300193y] [Citation(s) in RCA: 61] [Impact Index Per Article: 5.1] [Reference Citation Analysis] [Abstract] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Indexed: 11/28/2022]
Abstract
Calix[4]arene derivatives, blocked in the cone conformation and functionalized with two to four guanidinium units at the upper rim were synthesized and investigated as catalysts in the cleavage of the RNA model compound 2-hydroxypropyl p-nitrophenyl phosphate. When compared with the behavior of a monofunctional model compound, the catalytic superiority of the calix[4]arene derivatives points to a high level of cooperation between catalytic groups. Combination of acidity measurements with the pH dependence of catalytic rates unequivocally shows that a necessary requisite for effective catalysis is the simultaneous presence, on the same molecular framework, of a neutral guanidine acting as a general base and a protonated guanidine acting as an electrophilic activator. The additional guanidinium (guanidine) group in the diprotonated (monoprotonated) trifunctional calix[4]arene acts as a more or less innocent spectator. This is not the case with the tetrasubstituted calix[4]arene, whose mono-, di-, and triprotonated forms are slightly less effective than the corresponding di- and triguanidinocalix[4]arene derivatives, most likely on account of a steric interference with HPNP caused by overcrowding.
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Affiliation(s)
- Laura Baldini
- Dipartimento di Chimica Organica e Industriale, Università degli Studi di Parma, Parco Area delle Scienze 17/A, 43124 Parma, Italy
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33
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Sgrignani J, Magistrato A. The structural role of Mg2+ ions in a class I RNA polymerase ribozyme: a molecular simulation study. J Phys Chem B 2012; 116:2259-68. [PMID: 22268599 DOI: 10.1021/jp206475d] [Citation(s) in RCA: 40] [Impact Index Per Article: 3.3] [Reference Citation Analysis] [Abstract] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Indexed: 01/11/2023]
Abstract
According to the RNA world hypothesis, self-replicating ribozymes, storing the genetic information and being able to perform catalysis, were the constituents of the first living organisms. In particular, RNA polymerase ribozymes, similar to current proteinaceous enzymatic polymerases, may have been able to promote the synthesis of RNA strands in a primitive world. Polymerase catalysis is usually assisted by Mg(2+) ions, but it is not always trivial to find out experimentally the number of Mg(2+) ions placed in the active site as well as the identity and the number of their coordination ligands. Here, we addressed this issue in an artificial class I ligase ribozyme. On the basis of a recently solved crystal structure, we constructed computational models of reactant and product states of this ribozyme, considering monometallic and bimetallic species. Our models were relaxed by force field based molecular dynamics (MD) simulations and mixed quantum-classical (QM/MM) MD. The structural and dynamical properties of these models were consistent with experimental data and were validated by a comparison with the catalytic sites of proteinaceous DNA and RNA polymerases. Consistently with enzymatic polymerases, our results suggest that class I RNA ligases most probably contain two magnesium ions in the active site and they may, therefore, catalyze the junction of two RNA strands via "a two Mg(2+) ions" mechanism.
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Affiliation(s)
- Jacopo Sgrignani
- CNR-IOM-Democritos National Simulation Center C/o International Studies for Advanced Studies (SISSA/ISAS), Via Bonomea 265, 34165, Trieste, Italy
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34
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Tjioe L, Joshi T, Forsyth CM, Moubaraki B, Murray KS, Brugger J, Graham B, Spiccia L. Phosphodiester Cleavage Properties of Copper(II) Complexes of 1,4,7-Triazacyclononane Ligands Bearing Single Alkyl Guanidine Pendants. Inorg Chem 2011; 51:939-53. [DOI: 10.1021/ic2019814] [Citation(s) in RCA: 48] [Impact Index Per Article: 3.7] [Reference Citation Analysis] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Indexed: 12/13/2022]
Affiliation(s)
- Linda Tjioe
- School of Chemistry, Monash University, Vic 3800, Australia
| | - Tanmaya Joshi
- School of Chemistry, Monash University, Vic 3800, Australia
| | | | | | | | - Joël Brugger
- School of Earth and Environmental
Sciences, Centre of Tectonics, Resources and Exploration (TRaX), The University of Adelaide, North Terrace, SA 5005,
Australia
- Department of Mineralogy, South Australian Museum, Adelaide, SA 5000, Australia
| | - Bim Graham
- Medicinal Chemistry and Drug
Action, Monash Institute of Pharmaceutical Sciences, Monash University, Parkville, Vic 3052, Australia
| | - Leone Spiccia
- School of Chemistry, Monash University, Vic 3800, Australia
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35
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Panja A, Matsuo T, Nagao S, Hirota S. DNA Cleavage by the Photocontrolled Cooperation of ZnII Centers in an Azobenzene-Linked Dizinc Complex. Inorg Chem 2011; 50:11437-45. [DOI: 10.1021/ic201244y] [Citation(s) in RCA: 49] [Impact Index Per Article: 3.8] [Reference Citation Analysis] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Indexed: 12/22/2022]
Affiliation(s)
- Anangamohan Panja
- Graduate School of Materials Science, Nara Institute of Science and Technology, 8916-5 Takayama,
Ikoma, Nara 630-0192, Japan
| | - Takashi Matsuo
- Graduate School of Materials Science, Nara Institute of Science and Technology, 8916-5 Takayama,
Ikoma, Nara 630-0192, Japan
| | - Satoshi Nagao
- Graduate School of Materials Science, Nara Institute of Science and Technology, 8916-5 Takayama,
Ikoma, Nara 630-0192, Japan
| | - Shun Hirota
- Graduate School of Materials Science, Nara Institute of Science and Technology, 8916-5 Takayama,
Ikoma, Nara 630-0192, Japan
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36
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Salvio R, Cacciapaglia R, Mandolini L. General base-guanidinium cooperation in bifunctional artificial phosphodiesterases. J Org Chem 2011; 76:5438-43. [PMID: 21612212 DOI: 10.1021/jo2004007] [Citation(s) in RCA: 34] [Impact Index Per Article: 2.6] [Reference Citation Analysis] [Abstract] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Indexed: 12/26/2022]
Abstract
Artificial phosphodiesterases that combine a guanidinium unit with a general base connected by a m-xylylene linker catalyze the transesterification of the RNA model compound 2-hydroxypropyl p-nitrophenyl phosphate (HPNP). The bifunctional catalysts presented in this work show varying extents of cooperation between catalytic units and a rate enhancement of 4 × 10(4) in the most favorable case.
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Affiliation(s)
- Riccardo Salvio
- Dipartimento di Chimica and IMC-CNR Sezione Meccanismi di Reazione, Università La Sapienza, P.le Aldo Moro 5, 00185 Roma, Italy
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37
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Zhang S, Chun X, Chen Y, Zhou J. Synthesis, Crystal Structure and DNA Cleavage Activity of a Ternary Copper(II) Complex of Dipyrido[3,2-d:2′,3′-f]-quinoxaline and Glycine. CHINESE J CHEM 2011. [DOI: 10.1002/cjoc.201190062] [Citation(s) in RCA: 14] [Impact Index Per Article: 1.1] [Reference Citation Analysis] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Indexed: 12/18/2022]
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38
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Ren YW, Lu JX, Cai BW, Shi DB, Jiang HF, Chen J, Zheng D, Liu B. A novel asymmetric di-Ni(ii) system as a highly efficient functional model for phosphodiesterase: synthesis, structures, physicochemical properties and catalytic kinetics. Dalton Trans 2011; 40:1372-81. [DOI: 10.1039/c0dt01194k] [Citation(s) in RCA: 26] [Impact Index Per Article: 2.0] [Reference Citation Analysis] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Indexed: 12/24/2022]
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39
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Bencini A, Lippolis V. 1,10-Phenanthroline: A versatile building block for the construction of ligands for various purposes. Coord Chem Rev 2010. [DOI: 10.1016/j.ccr.2010.04.008] [Citation(s) in RCA: 288] [Impact Index Per Article: 20.6] [Reference Citation Analysis] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Indexed: 10/19/2022]
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40
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41
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Krauser JA, Joshi AL, Kady IO. Metal complexes of modified cyclen as catalysts for hydrolytic restriction of plasmid DNA. J Inorg Biochem 2010; 104:877-84. [DOI: 10.1016/j.jinorgbio.2010.04.007] [Citation(s) in RCA: 11] [Impact Index Per Article: 0.8] [Reference Citation Analysis] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Received: 12/03/2009] [Revised: 04/15/2010] [Accepted: 04/16/2010] [Indexed: 11/30/2022]
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42
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Seng HL, Von ST, Tan KW, Maah MJ, Ng SW, Rahman RNZRA, Caracelli I, Ng CH. Crystal structure, DNA binding studies, nucleolytic property and topoisomerase I inhibition of zinc complex with 1,10-phenanthroline and 3-methyl-picolinic acid. Biometals 2009; 23:99-118. [DOI: 10.1007/s10534-009-9271-y] [Citation(s) in RCA: 43] [Impact Index Per Article: 2.9] [Reference Citation Analysis] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Received: 06/21/2009] [Accepted: 09/11/2009] [Indexed: 01/17/2023]
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43
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Self-assembled synthesis, characterization and antimicrobial activity of zinc(II) salicylaldimine complexes. Inorganica Chim Acta 2009. [DOI: 10.1016/j.ica.2009.02.012] [Citation(s) in RCA: 69] [Impact Index Per Article: 4.6] [Reference Citation Analysis] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Indexed: 11/23/2022]
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44
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Gahan LR, Smith SJ, Neves A, Schenk G. Phosphate Ester Hydrolysis: Metal Complexes As Purple Acid Phosphatase and Phosphotriesterase Analogues. Eur J Inorg Chem 2009. [DOI: 10.1002/ejic.200900231] [Citation(s) in RCA: 96] [Impact Index Per Article: 6.4] [Reference Citation Analysis] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Indexed: 12/23/2022]
Affiliation(s)
- Lawrence R. Gahan
- School of Chemistry and Molecular BioSciences, The University of Queensland, 4072 Brisbane, Australia
| | - Sarah J. Smith
- School of Chemistry and Molecular BioSciences, The University of Queensland, 4072 Brisbane, Australia
| | - Ademir Neves
- Laboratorio de Bioinorgânica e Cristalografica, Departamento de Química, Universidade Federal de Santa Catarina, 88040‐900, Florianópolis, SC, Brazil
| | - Gerhard Schenk
- School of Chemistry and Molecular BioSciences, The University of Queensland, 4072 Brisbane, Australia
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45
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Laine M, Ketomäki K, Poijärvi-Virta P, Lönnberg H. Base moiety selectivity in cleavage of short oligoribonucleotides by di- and tri-nuclear Zn(II) complexes of azacrown-derived ligands. Org Biomol Chem 2009; 7:2780-7. [PMID: 19532995 DOI: 10.1039/b904828f] [Citation(s) in RCA: 18] [Impact Index Per Article: 1.2] [Reference Citation Analysis] [Abstract] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Indexed: 12/22/2022]
Abstract
Cleavage of 6-mer oligoribonucleotides by the dinuclear Zn2+ complex of 1,3-bis[(1,5,9-triazacyclododecan-3-yl)oxymethyl]benzene (L1) and the trinuclear Zn2+ complex of 1,3,5-tris[(1,5,9-triazacyclododecan-3-yl)oxymethyl]benzene (L3) has been studied. The dinuclear complex cleaves at sufficiently low concentrations ([(Zn2+)2L1] < or = 0.1 mmol L(-1)) the 5'NpU3' and 5'UpN3' bonds (N = G, C, A) much more readily than the other phosphodiester bonds, but leaves the 5'UpU3' site intact. The trinuclear (Zn2+)3L3 complex, in turn, cleaves the 5'UpU3' bond more readily than any other linkages, even faster than the 5'NpU3' and 5'UpN3' sites. Somewhat unexpectedly, the 5'UpNpU3' site is cleaved only slowly by both the di- and tri-nuclear complex. The base-moiety selectivity remains qualitatively similar, though slightly less pronounced, when the hexanucleotides are closed to hairpin loops by three additional CG-pairs of 2'-O-methylribonucleotides. Phosphodiester bonds within a double helical stem are not cleaved, not even the 5'UpU3' sites. Guanine base also becomes recognized by (Zn2+)2L1 and (Zn2+)3L3, but the affinity to G is clearly lower than to U. The trinuclear cleaving agent, however, cleaves the 5'GpG3' bond only 35% less readily than the 5'UpU3' bond.
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Affiliation(s)
- Maarit Laine
- Department of Chemistry, University of Turku, FIN-20014, Turku, Finland
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46
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He J, Sun J, Mao ZW, Ji LN, Sun H. Phosphodiester hydrolysis and specific DNA binding and cleavage promoted by guanidinium-functionalized zinc complexes. J Inorg Biochem 2009; 103:851-8. [DOI: 10.1016/j.jinorgbio.2009.02.010] [Citation(s) in RCA: 57] [Impact Index Per Article: 3.8] [Reference Citation Analysis] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Received: 09/17/2008] [Revised: 02/23/2009] [Accepted: 02/27/2009] [Indexed: 11/16/2022]
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47
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Liu C, Wang L. DNA hydrolytic cleavage catalyzed by synthetic multinuclear metallonucleases. Dalton Trans 2009:227-39. [DOI: 10.1039/b811616d] [Citation(s) in RCA: 95] [Impact Index Per Article: 6.3] [Reference Citation Analysis] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Indexed: 01/03/2023]
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48
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