Theoretical models for the oxygen radical mechanism of water oxidation and of the water oxidizing complex of photosystem II

Mechanistic Insights into Cobalt-Based Water Oxidation Catalysis by DFT-Based Molecular Dynamics Simulations

We report the mechanistic details of the water oxidation process by the complex, [Co^II(bpbH₂)Cl₂], where bpbH₂ = N, N'-bis(2'-pyridinecarboxamide)-1,2-benzene. An experimental study reported the complex as the efficient catalyst for the water oxidation process. We performed density functional theory calculations at the M06-L level and first-principles molecular dynamics simulations to study the catalytic nature of the complex. We investigated the energetics of the total catalytic cycle, which combines the oxygen-oxygen bond formation, proton-coupled electron transfer (PCET) steps, and release of oxygen molecule. The formed peroxide and superoxide intermediates in the catalytic cycle were characterized with the help of the Mulliken spin density parameters. Mulliken spin densities of the metal-oxo bond reveal that the triplet state of Co^V═O has a double-bond nature, but the quintet state of the complex has a radical nature (Co^IV-O^•-). In an alternative way, the deprotonation of the amide groups of the ligand is also considered. The deprotonation and formation of higher oxidation metal-oxo intermediates are also possible. In addition to this, we have considered the effect of phosphate buffer on water nucleophilic addition. The oxygen-oxygen bond formation is favorable by the catalyst with the deprotonated form of the ligand, with the addition of water as the nucleophile. In the oxidation process, the C═O bonds of the ligand transfer the electron density to nitrogen atoms, stabilizing the higher order oxo, peroxide, and superoxide bonds. The oxygen-oxygen bond formation is the rate-determining step in the overall water oxidation process. This bond was further investigated using first-principles molecular dynamics at the PBE-D2 level. The dynamics of proton, hydroxide ion, and the nature of the ligand structure on the oxygen-oxygen bond were examined. We find that the oxygen molecule is released from the superoxide complex with the addition of water molecules.

From manganese oxidation to water oxidation: assembly and evolution of the water-splitting complex in photosystem II

The manganese cluster of photosystem II has been the focus of intense research aiming to understand the mechanism of H₂O-oxidation. Great effort has also been applied to investigating its oxidative photoassembly process, termed photoactivation that involves the light-driven incorporation of metal ions into the active Mn₄CaO₅ cluster. The knowledge gained on these topics has fundamental scientific significance, but may also provide the blueprints for the development of biomimetic devices capable of splitting water for solar energy applications. Accordingly, synthetic chemical approaches inspired by the native Mn cluster are actively being explored, for which the native catalyst is a useful benchmark. For both the natural and artificial catalysts, the assembly process of incorporating Mn ions into catalytically active Mn oxide complexes is an oxidative process. In both cases this process appears to share certain chemical features, such as producing an optimal fraction of open coordination sites on the metals to facilitate the binding of substrate water, as well as the involvement of alkali metals (e.g., Ca²⁺) to facilitate assembly and activate water-splitting catalysis. This review discusses the structure and formation of the metal cluster of the PSII H₂O-oxidizing complex in the context of what is known about the formation and chemical properties of different Mn oxides. Additionally, the evolutionary origin of the Mn₄CaO₅ is considered in light of hypotheses that soluble Mn²⁺ was an ancient source of reductant for some early photosynthetic reaction centers ('photomanganotrophy'), and recent evidence that PSII can form Mn oxides with structural resemblance to the geologically abundant birnessite class of minerals. A new functional role for Ca²⁺ to facilitate sustained Mn²⁺ oxidation during photomanganotrophy is proposed, which may explain proposed physiological intermediates during the likely evolutionary transition from anoxygenic to oxygenic photosynthesis.

Molecular Mechanism of the Mononuclear Copper Complex-Catalyzed Water Oxidation from Cluster-Continuum Model Calculations

Cluster-continuum model calculations were conducted to decipher the mechanism of water oxidation catalyzed by a mononuclear copper complex. Among various O-O bond formation mechanisms investigated in this study, the most favorable pathway involved the nucleophilic attack of OH^- onto the ^.+ L-Cu^II -OH^- intermediate. During such process, the initial binding of OH^- to the proximity of ^.+ L-Cu^II -OH^- would result in the spontaneous oxidation of OH^- , leading to OH⋅ radical and Cu^II -OH^- species. The further O-O coupling between OH⋅ radical and Cu^II -OH^- was associated with a barrier of 14.8 kcal mol^-1 , leading to the formation of H₂ O₂ intermediate. Notably, the formation of "Cu^III -O^.- " species, a widely proposed active species for O-O bond formation, was found to be thermodynamically unfavorable and could be bypassed during the catalytic reactions. On the basis the present calculations, a catalytic cycle of the mononuclear copper complex-catalyzed water oxidation was proposed.

Mechanistic Insight into the O2 Evolution Catalyzed by Copper Complexes with Tetra- and Pentadentate Ligands

The mononuclear complexes ([(bztpen)Cu] (BF₄)₂ (bztpen = N-benzyl-N,N',N'-tris (pyridin-2-yl methyl ethylenediamine))) and ([(dbzbpen)Cu(OH₂)] (BF₄)₂ (dbzbpen = N,N'-dibenzyl-N,N'-bis(pyridin-2-ylmethyl) ethylenediamine)) have been reported as water oxidation catalysts in basic medium (pH = 11.5). We explore the O₂ evolution process catalyzed by these copper catalysts with various ligands (L) by applying the first-principles molecular dynamics simulations. First, the oxidation of catalysts to the metal-oxo intermediates [LCu(O)]²⁺ occurs through the proton-coupled electron transfer (PCET) process. These intermediates are involved in the oxygen-oxygen bond formation through the water-nucleophilic addition process. Here, we have considered two types of oxygen-oxygen bond formation. The first one is the transfer of the hydroxide of the water molecule to the Cu═O moiety; the proton transfer to the solvent leads to the formation of the peroxide complex ([LCu(OOH)]⁺). The other is the formation of the hydrogen peroxide complex ([LCu(HOOH)]²⁺) by the transfer of proton and hydroxide of the water molecule to the metal-oxo intermediate. The formation of the peroxide complex requires less activation free energy than hydrogen peroxide formation for both catalysts. We found two transition states in the well-tempered metadynamics simulations: one for proton transfer and another for hydroxide transfer. In both cases, the proton transfer requires higher free energy. Following the formation of the oxygen-oxygen bond, we study the release of the dioxygen molecule. The formed peroxide and hydrogen peroxide complexes are converted into the superoxide complex ([LCu(OO)]²⁺) through the transfer of proton, electron, and PCET processes. The superoxide complex releases an oxygen molecule upon the addition of a water molecule. The free energy of activation for the release of the dioxygen molecule is lesser than that of the oxygen-oxygen bond formation. When we observe the entire water oxidation process, the oxygen-oxygen bond formation is the rate-determining step. We calculated the rates of reaction by using the Eyring equation and found them to be close to the experimental values.

Mechanism and Dynamics of Formation of Bisoxo Intermediates and O-O Bond in the Catalytic Water Oxidation Process

This work elucidates the reactivity of water molecules toward the tridentate nitrogen-containing iron complex in the water oxidation process. Here, we consider the Fe^V-bisoxo complex {[Fe^V(Me₃tacn)(OH₂)(═O)₂]⁺} to be responsible for the oxygen-oxygen bond formation. This O-O bond formation happens through the addition of water as a nucleophile. The transition state was determined by the synchronous transit-guided quasi-Newton method using reactants and products and verified by intrinsic reaction coordinates (IRCs). From the IRC calculations, we observe that the Fe^V═O moiety is attacked by water and assisted by the H-bonded interaction with the oxygen atom of the bisoxo complex. The hydrogen atom is transferred to the oxygen atom of the bisoxo complex through the transition state, and subsequently, the hydroxide is transferred to another oxygen of the bisoxo complex, resulting in the formation of the oxygen-oxygen bond. This work also explains the effect of explicit water molecules on the oxygen-oxygen bond formation. Our results also show how the formation of superoxide plays an essential role in O₂ evolution. We used the potential energy scan method to compute the transition state in the oxygen evolution step. In the present work, we study the effect of chlorine on the formation of the oxygen-oxygen bond formation. In this study, the changes in the oxidation state, spin density, and spin multiplicity of the complexes are investigated for each successive step. Apart from these static theoretical calculations, we also studied the oxygen-oxygen bond formation through first-principles molecular dynamics with the aid of the well-tempered metadynamics sampling technique. From the observation of the free energy surfaces from metadynamics simulations, it is evident that the hydroxide transfer has a lesser free energetic reaction as compared to the proton transfer. This complete mechanistic study may give an idea to design a suitable water oxidation catalyst.

Ligand architecture for triangular metal complexes: a high oxidation state Ni3 cluster with proximal metal arrangement

A new multidentate tetraanionic ligand platform for supporting trinuclear transition metal clusters has been developed. Two trisphenoxide phosphinimide ligands bind three Ni centers in a triangular arrangement. The phosphinimide donors bridge in μ3 fashion and the phenoxides complete a pseudo-square planar coordination sphere around each metal center. Electrochemical studies reveal two pseudo-reversible oxidation events at notably low potentials (-0.80 V and +0.05 V). The one electron oxidized species was characterized structurally, and it is assigned as a NiIII-containing cluster.

Role of the Photosystem II as an Environment in the Oxidation Free Energy of the Mn Cluster from S1 to S2

The manganese cluster (CaMn₄O₅) in the photosystem II (PSII) is the reaction center of the light-driven oxidation reaction, which generates the molecular oxygen. In this paper, we address the issue of the effect of the environment on the free energy associated with the oxidation of the Mn cluster in S₁ state by conducting the large-scale quantum mechanical/molecular mechanical simulations, which involve the whole of the PSII monomer. It was found by the simulations at the level of the B3LYP functional that the environment surrounding the Mn cluster reduces the vertical oxidation free energy Δμ_vrt by 64.8 kcal/mol. A decomposition analysis of the free energy Δμ_vrt revealed that the system composed of peptide chains, ligands, lipids, and potassium ions contributes to lowering of Δμ_vrt by -98.0 kcal/mol, whereas the solvent water makes an opposite contribution of 38.9 kcal/mol. Reduction of the vertical oxidation free energy directly leads to the lowering of the activation free energy ΔG_ac for the electron transfer reaction from the Mn cluster in S₁ state to the neighboring Tyr_z⁺. Consequently, the electron transfer rate was found to be enhanced by a factor of 10¹² by virtue of the influence of the environment.

Mono-/Multinuclear Water Oxidation Catalysts

Water splitting, in which water molecules can be transformed into hydrogen and oxygen, is an appealing energy conversion and transformation strategy to address the environmental and energy crisis. The oxygen evolution reaction (OER) is dynamically slow, which limits energy conversion efficiency during the water-splitting process and requires high-efficiency water oxidation catalysts (WOCs) to overcome the OER energy barrier. It is generally accepted that multinuclear WOCs possess superior OER performances, as demonstrated by the CaMn₄ O₅ cluster in photosystem II (PSII), which can catalyze the OER efficiently with a very low overpotential. Inspired by the CaMn₄ O₅ cluster in PSII, some multinuclear WOCs were synthesized that could catalyze water oxidation. In addition, some mononuclear molecular WOCs also show high water oxidation activity. However, it cannot be excluded that the high activity arises from the formation of dimeric species. Recently, some mononuclear heterogeneous WOCs showed a high water oxidation activity, which testified that mononuclear active sites with suitable coordination surroundings could also catalyze water oxidation efficiently. This Review focuses on recent progress in the development of mono-/multinuclear homo- and heterogeneous catalysts for water oxidation. The active sites and possible catalytic mechanisms for water oxidation on the mono-/multinuclear WOCs are provided.

Oxygenic photosynthesis: history, status and perspective

Cyanobacteria and plants carry out oxygenic photosynthesis. They use water to generate the atmospheric oxygen we breathe and carbon dioxide to produce the biomass serving as food, feed, fibre and fuel. This paper scans the emergence of structural and mechanistic understanding of oxygen evolution over the past 50 years. It reviews speculative concepts and the stepped insight provided by novel experimental and theoretical techniques. Driven by sunlight photosystem II oxidizes the catalyst of water oxidation, a hetero-metallic Mn4CaO5(H2O)4 cluster. Mn3Ca are arranged in cubanoid and one Mn dangles out. By accumulation of four oxidizing equivalents before initiating dioxygen formation it matches the four-electron chemistry from water to dioxygen to the one-electron chemistry of the photo-sensitizer. Potentially harmful intermediates are thereby occluded in space and time. Kinetic signatures of the catalytic cluster and its partners in the photo-reaction centre have been resolved, in the frequency domain ranging from acoustic waves via infra-red to X-ray radiation, and in the time domain from nano- to milli-seconds. X-ray structures to a resolution of 1.9 Å are available. Even time resolved X-ray structures have been obtained by clocking the reaction cycle by flashes of light and diffraction with femtosecond X-ray pulses. The terminal reaction cascade from two molecules of water to dioxygen involves the transfer of four electrons, two protons, one dioxygen and one water. A rigorous mechanistic analysis is challenging because of the kinetic enslaving at millisecond duration of six partial reactions (4e−, 1H+, 1O2). For the time being a peroxide-intermediate in the reaction cascade to dioxygen has been in focus, both experimentally and by quantum chemistry. Homo sapiens has relied on burning the products of oxygenic photosynthesis, recent and fossil. Mankind's total energy consumption amounts to almost one-fourth of the global photosynthetic productivity. If the average power consumption equalled one of those nations with the highest consumption per capita it was four times greater and matched the total productivity. It is obvious that biomass should be harvested for food, feed, fibre and platform chemicals rather than for fuel.

Model of the Oxygen Evolving Complex Which Is Highly Predisposed to O-O Bond Formation

Light-driven water oxidation is a fundamental reaction in the biosphere. The Mn₄Ca cluster of photosystem II cycles through five redox states termed S₀-S₄, after which oxygen is evolved. Critically, the timing of O-O bond formation within the Kok cycle remains unknown. By combining recent crystallographic, spectroscopic, and DFT results, we demonstrate an atomistic S₃ state model with the possibility of a low barrier to O-O bond formation prior to the final oxidation step. Furthermore, the associated one electron oxidized S₄ state does not provide more advantages in terms of spin alignment or the energy of O-O bond formation. We propose that a high energy peroxide isoform of the S₃ state can preferentially be oxidized by Tyr _z^ox in the course of final electron transfer leading to O₂ evolution. Such a mechanism may explain the peculiar kinetic behavior of O₂ evolution as well as serve as an evolutionary adaptation to avoid release of the harmful peroxides.

Theoretical insights into the reactivity of Fe-based catalysts for water oxidation: the role of electron-withdrawing groups

The relative catalytic efficiency of a series of Fe-based water oxidation catalysts is elucidated by comprehensive calculations using density functional theory methods.

Mechanism of Water Oxidation Catalyzed by a Mononuclear Manganese Complex

The design and synthesis of biomimetic Mn complexes to catalyze oxygen evolution is a very appealing goal because water oxidation in nature employs a Mn complex. Recently, the mononuclear Mn complex [LMn^II (H₂ O)₂ ]²⁺ [1, L=Py₂ N(tBu)₂ , Py=pyridyl] was reported to catalyze water oxidation electrochemically at an applied potential of 1.23 V at pH 12.2 in aqueous solution. Density functional calculations were performed to elucidate the mechanism of water oxidation promoted by this catalyst. The calculations showed that 1 can lose two protons and one electron readily to produce [LMn^III (OH)₂ ]⁺ (2), which then undergoes two sequential proton-coupled electron-transfer processes to afford [LMn^V OO]⁺ (4). The O-O bond formation can occur through direct coupling of the two oxido ligands or through nucleophilic attack of water. These two mechanisms have similar barriers of approximately 17 kcal mol^-1 . The further oxidation of 4 to generate [LMn^VI OO]²⁺ (5), which enables O-O bond formation, has a much higher barrier. In addition, ligand degradation by C-H activation has a similar barrier to that for the O-O bond formation, and this explains the relatively low turnover number of this catalyst.

A DFT/B3LYP study of the mechanisms of the O2 formation reaction catalyzed by the [(terpy)(H2O)MnIII(O)2MnIV(OH2)(terpy)](NO3)3 complex: A paradigm for photosystem II

We present a theoretical study of the reaction pathway for dioxygen molecular formation catalyzed by the [(terpy)(H₂O)Mn^III(O)₂Mn^IV(OH₂) (terpy)](NO₃)₃ (terpy=2,2':6',2″-terpyridine) complex based on DFT-B3LYP calculations. In the initial state of the reaction, a partial oxido radical (0.44 spins) is formed ligated to Mn. This radical is involved in a nucleophylic attack by bulk water in the OO bond reaction formation step, in which the oxido fractional unpaired electron is delocalized toward the outermost Mn of the μ-oxo bridge, instead of the ligated Mn center. The reaction then follows with a series of proton-coupled electron transfer steps, in which the oxidation state, as well as the bond strength of the OO moiety increase, while the OOMn(1) bond gets weaker until O₂ is released. In this model, basic acetate ions from the buffer solution capture protons in the proton-transfer steps. In each step there is reduction of the OOMn(1) binding strength, with concomitant increase of the OO bond strength, which culminates with the release of O₂ in the last step. This last step is entropy driven, while formation of hydroperoxide and superoxide moieties is enthalpy driven. According with experiments, the rate-limiting step is the double oxidation of Mn(IV,III) or peroxymonosulfate binding, which occur prior to the OO bond formation step. This supports our findings that the barriers of all intermediate steps are below the experimental barrier of 19-21kcal/mol. The implications of these findings for understanding photosynthetic water-splitting catalysis are also discussed.

A nano-sized manganese oxide in a protein matrix as a natural water-oxidizing site

The purpose of this review is to present recent advances in the structural and functional studies of water-oxidizing center of Photosystem II and its surrounding protein matrix in order to synthesize artificial catalysts for production of clean and efficient hydrogen fuel.

Saturation kinetics in phenolic O-H bond oxidation by a mononuclear Mn(III)-OH complex derived from dioxygen

The mononuclear hydroxomanganese(III) complex, [Mn(III)(OH)(dpaq)](+), which is supported by the amide-containing N5 ligand dpaq (dpaq = 2-[bis(pyridin-2-ylmethyl)]amino-N-quinolin-8-yl-acetamidate) was generated by treatment of the manganese(II) species, [Mn(II)(dpaq)](OTf), with dioxygen in acetonitrile solution at 25 °C. This oxygenation reaction proceeds with essentially quantitative yield (greater than 98% isolated yield) and represents a rare example of an O2-mediated oxidation of a manganese(II) complex to generate a single product. The X-ray diffraction structure of [Mn(III)(OH)(dpaq)](+) reveals a short Mn-OH distance of 1.806(13) Å, with the hydroxo moiety trans to the amide function of the dpaq ligand. No shielding of the hydroxo group is observed in the solid-state structure. Nonetheless, [Mn(III)(OH)(dpaq)](+) is remarkably stable, decreasing in concentration by only 10% when stored in MeCN at 25 °C for 1 week. The [Mn(III)(OH)(dpaq)](+) complex participates in proton-coupled electron transfer reactions with substrates with relatively weak O-H and C-H bonds. For example, [Mn(III)(OH)(dpaq)](+) oxidizes TEMPOH (TEMPOH = 2,2'-6,6'-tetramethylpiperidine-1-ol), which has a bond dissociation free energy (BDFE) of 66.5 kcal/mol, in MeCN at 25 °C. The hydrogen/deuterium kinetic isotope effect of 1.8 observed for this reaction implies a concerted proton-electron transfer pathway. The [Mn(III)(OH)(dpaq)](+) complex also oxidizes xanthene (C-H BDFE of 73.3 kcal/mol in dimethylsulfoxide) and phenols, such as 2,4,6-tri-t-butylphenol, with BDFEs of less than 79 kcal/mol. Saturation kinetics were observed for phenol oxidation, implying an initial equilibrium prior to the rate-determining step. On the basis of a collective body of evidence, the equilibrium step is attributed to the formation of a hydrogen-bonding complex between [Mn(III)(OH)(dpaq)](+) and the phenol substrates.

Structure of Sr-substituted photosystem II at 2.1 A resolution and its implications in the mechanism of water oxidation

Oxygen-evolving complex of photosystem II (PSII) is a tetra-manganese calcium penta-oxygenic cluster (Mn4CaO5) catalyzing light-induced water oxidation through several intermediate states (S-states) by a mechanism that is not fully understood. To elucidate the roles of Ca(2+) in this cluster and the possible location of water substrates in this process, we crystallized Sr(2+)-substituted PSII from Thermosynechococcus vulcanus, analyzed its crystal structure at a resolution of 2.1 Å, and compared it with the 1.9 Å structure of native PSII. Our analysis showed that the position of Sr was moved toward the outside of the cubane structure of the Mn4CaO5-cluster relative to that of Ca(2+), resulting in a general elongation of the bond distances between Sr and its surrounding atoms compared with the corresponding distances in the Ca-containing cluster. In particular, we identified an apparent elongation in the bond distance between Sr and one of the two terminal water ligands of Ca(2+), W3, whereas that of the Sr-W4 distance was not much changed. This result may contribute to the decrease of oxygen evolution upon Sr(2+)-substitution, and suggests a weak binding and rather mobile nature of this particular water molecule (W3), which in turn implies the possible involvement of this water molecule as a substrate in the O-O bond formation. In addition, the PsbY subunit, which was absent in the 1.9 Å structure of native PSII, was found in the Sr-PSII structure.

Water oxidation mechanism in photosystem II, including oxidations, proton release pathways, O-O bond formation and O2 release

The present status of DFT studies on water oxidation in photosystem II is described. It is argued that a full understanding of all steps is close. In each S-transition, the manganese that is oxidized and the proton released are strongly implicated, and structures of all intermediates have been determined. For the S2-state, recent important experimental findings support key elements of the structure and the mechanism. In this mechanism, the O-O bond is formed between an oxyl radical in the center of the cluster and an Mn-bridging μ-oxo ligand, which was suggested already in 2006. The DFT structure of the oxygen evolving complex, suggested in 2008, is very similar to the recent high-resolution X-ray structure. Some new aspects of the interaction between P680 and the OEC are suggested. This article is part of a Special Issue entitled: Metals in Bioenergetics and Biomimetics Systems.

Site-isolated redox reactivity in a trinuclear iron complex

The symmetric, high-spin triiron complex ((Ph)L)Fe(3)(THF)(3) reacts with mild chemical oxidants (e.g., Ph(3)C-X, I(2)) to afford an asymmetric core, where one iron bears the halide ligand ((Ph)L)Fe(3)X(L) and the hexadentate ((Ph)L = MeC(CH(2)NPh-o-NPh)(3)) ligand has undergone significant rearrangement. In the absence of a suitable trapping ligand, the chlorine and bromine complexes form (μ-X)(2)-bridged structures of the type [((Ph)L)Fe(3)(μ-X)](2). In the trinuclear complexes, the halide-bearing iron site sits in approximate trigonal-bipyramidal (tbp) geometry, formed by two ((Ph)L) anilides and an exogenous solvent molecule. The two distal iron atoms reside in distorted square-planar sites featuring a short Fe-Fe separation at 2.301 Å, whereas the distance to the tbp site is substantially elongated (2.6-2.7 Å). Zero-field, (57)Fe Mössbauer analysis reveals the diiron unit as the locus of oxidation, while the tbp site bearing the halide ligand remains divalent. Magnetic data acquired for the series reveal that the oxidized diiron unit comprises a strongly coupled S = (3)/(2) unit that is weakly ferromagnetically coupled to the high-spin (S = 2) ferrous site, giving an overall S = (7)/(2) ground state for the trinuclear units.

THEORETICAL STUDY ON METHANE HYDROXYLATION BY MIMIC METHANE MONOOXYGENASE WITH bis(μ-OXO)DIMANGANESE CORE

The reaction mechanism for methane hydroxylation catalyzed by mimic methane monooxygenase (MMO) with bis(μ-oxo)dimanganese core has been investigated on the septet and nonet potential energy surfaces by hybrid density functional method B3LYP. The key reactive compound Q of MMO was modeled by trans- (H2CNH)(COOH) Mn(μ-O)2(μ-HCOO)2Mn(H2CNH)(COOH) . The ground state of Q is located on the septet state, which has a diamond-core structure with two Mn(IV) atoms. It is shown that the reaction proceeds via a radical-rebound mechanism, in which the step of C–H cleavage is the rate-determining step both in the gas phase and solution. Furthermore, the reaction may proceed more easily as the polarity of solution is larger. On the other hand, the kinetic isotope effects (KIEs) for H atom abstraction from methane are taken into account on the basis of transition state theory with Wigner tunneling corrections. The mimic MMO with bis(μ-oxo)dimanganese core might be an effective mimic catalyst for methane hydroxylation.

Kinetics and mechanism of the oxidation of hydroxylamine by a {Mn3O4}4+ core in aqueous acidic media

In this work we report the kinetics of oxidation of hydroxylamine by a trinuclear Mn(IV) oxidant, [Mn(3)(μ-O)(4)(phen)(4)(H(2)O)(2)](4+) (1, phen = 1,10-phenanthroline), in aqueous solution over a pH range 2.0-4.0. The trinuclear Mn(IV) species (1) deprotonates in aqueous solution at physiological pH: 1 ⇌ 2 + H(+); pK(1) = 4.00 (± 0.15) at 25.0 °C, I = 1.0 (M) NaNO(3). Both 1 and 2 are reactive oxidants reacting with the conjugate acid of hydroxylamine, viz. NH(3)OH(+) where the deprotonated oxidant 2 reacts faster. This finding is in contrast to a common observation and belief that protonated oxidants react quicker than their deprotonated analogues. Mn(IV)(3) to Mn(II) transition in the present reaction proceeds through the intervention of a spectrally detected mixed-valent Mn(III)Mn(IV) dimer that quickly collapses to Mn(II). The rate of the reaction was found to be lowered in D(2)O-enriched media in comparison to that in pure H(2)O media. An initial one electron one proton transfer to Mn(IV)(3) (electroprotic; 1e, 1H(+)) could be mechanistically conceived as the rate step. We also demonstrate by means of high level DFT studies that, among the two sets of Mn(IV) atoms in the trinuclear oxidant, the unique one that is coordinated with two phen ligands and two oxo-bridges is reduced to Mn(III) at the rate step. This is explained based on energetic and spin density calculations. Moreover, this result agrees with the charge distribution on the Mn atoms of the trinuclear complex.

Multi-site reactivity: reduction of six equivalents of nitrite to give an Fe6(NO)6 cluster with a dramatically expanded octahedral core

Reaction of NO(2)(-) with the octahedral cluster ((H)L)(2)Fe(6) in the presence of a proton source affords the hexanitrosyl cluster ((H)L)(2)Fe(6)(NO)(6). This species forms via a proton-induced reduction of six nitrite molecules per cluster, utilizing each site available on the polynuclear core. Formation of the hexanitrosyl cluster is accompanied by a near 2-fold expansion of the ((H)L)(2)Fe(6) core volume, where intracore Fe-Fe interactions are overcome by strong π-bonding between Fe centers and NO ligands. A core volume of this magnitude is rare in octahedral metal clusters not supported by interstitial atoms. Moreover, the structural flexibility afforded by the ((H)L)(2)Fe(6) platform highlights the potential for other reaction chemistry involving species with metal-ligand multiple bonds. Carrying out the reaction of the cluster [((H)L)(2)Fe(6)(NCMe)(6)](4+) with nitrite in the absence of a proton source serves to forestall the nitrite reduction and enables clean isolation of the intermediate hexanitro cluster [((H)L)(2)Fe(6)(NO(2))(6)](2-).

Mechanistic studies on the oxidation of ascorbic acid and hydroquinone by a {Mn4O6}4+ core in aqueous media

Described in this work is the kinetics of oxidation of ascorbic acid and hydroquinone by a tetranuclear Mn(IV) oxidant, [Mn(4)(μ-O)(6)(bipy)(6)](4+) (1(4+), bipy =2,2(/)-bipyridine), in aqueous solution over a wide pH range 1.5-6.0. In particular, below pH 3.0, protonation on the oxo-bridge of 1(4+) results in the formation of [Mn(4)(μ-O)(5)(μ-OH)(bipy)(6)](5+) (1H(5+)) as an additional oxidant over 1(4+). Both ascorbic acid and ascorbate whereas only hydroquinone and none of its protolytic species were found to be reactive reducing agents in these reactions. Analysis of the rate data clearly established that the oxo-bridge protonated oxidant 1H(5+) is kinetically far more superior to 1(4+) in oxidizing ascorbic acid and hydroquinone. Rates of these reactions are substantially lowered in D(2)O-enriched media in comparison to that in H(2)O media. An initial one electron one proton transfer electroprotic rate step could be mechanistically conceived. DFT studies established that among the two sets of terminal and central Mn(IV) atoms in the tetranuclear oxidant, one of the two terminal Mn(IV) is reduced to Mn(III) at the rate step that we can intuitively predict considering the probable positive charge distribution on the Mn(IV) atoms.

Structural and mechanistic investigations of photosystem II through computational methods

The advent of oxygenic photosynthesis through water oxidation by photosystem II (PSII) transformed the planet, ultimately allowing the evolution of aerobic respiration and an explosion of ecological diversity. The importance of this enzyme to life on Earth has ironically been paralleled by the elusiveness of a detailed understanding of its precise catalytic mechanism. Computational investigations have in recent years provided more and more insights into the structural and mechanistic details that underlie the workings of PSII. This review will present an overview of some of these studies, focusing on those that have aimed at elucidating the mechanism of water oxidation at the CaMn₄ cluster in PSII, and those exploring the features of the structure and dynamics of this enzyme that enable it to catalyse this energetically demanding reaction. This article is part of a Special Issue entitled: Photosystem II.

Calcium in the oxygen-evolving complex: structural and mechanistic role determined by X-ray spectroscopy

This review describes the results from X-ray Absorption Spectroscopy studies that have contributed to an understanding of the role of Ca in the photosynthetic water-oxidation reaction. The results include the first Mn, Ca and Sr X-ray spectroscopy studies using Ca or Sr-substituted PS II samples that established the presence of a MnCa heteronuclear structure and its orientation, and the most recent Sr X-ray spectroscopy study using biosynthetically prepared Sr-containing PS II in the various S-states that provide important insights into the requirement for Ca in the mechanism of the Mn(4)Ca catalytic center.

Recent theoretical studies of water oxidation in photosystem II

In the present mini-review, computational work over the past decade on water oxidation in photosystem II (PSII) is summarized. The size of the chemical model used for the oxygen evolving complex (OEC) has during this time increased from the initial 20 atoms to the present day 220 atoms. The electronic structure methods used have during the same period only undergone minor improvements. It is concluded that the results have now reached a high level of convergence and the predictions for both the structure of the OEC and the O-O bond formation mechanism are most probably of higher accuracy than presently available from experiments.

Activation of a water molecule using a mononuclear Mn complex: from Mn-aquo, to Mn-hydroxo, to Mn-oxyl via charge compensation

Activation of a water molecule by the electrochemical oxidation of a Mn-aquo complex accompanied by the loss of protons is reported. The sequential (2 × 1 electron/1 proton) and direct (2 electron/2 proton) proton-coupled electrochemical oxidation of a non-porphyrinic six-coordinated Mn(II)OH2 complex into a mononuclear Mn(O) complex is described. The intermediate Mn(III)OH2 and Mn(III)OH complexes are electrochemically prepared and analysed. Complete deprotonation of the coordinated water molecule in the Mn(O) complex is confirmed by electrochemical data while the analysis of EXAFS data reveals a gradual shortening of an Mn-O bond upon oxidation from Mn(II)OH2 to Mn(III)OH and Mn(O). Reactivity experiments, DFT calculations and XANES pre-edge features provide strong evidence that the bonding in Mn(O) is best characterized by a Mn(III)-oxyl description. Such oxyl species could play a crucial role in natural and artificial water splitting reactions. We provide here a synthetic example for such species, obtained by electrochemical activation of a water ligand.