Substituent effects. 5. Vinyl and ethynyl derivatives. An examination of the interaction of amino and hydroxy groups with carbon-carbon double and triple bonds

The Chemical Bond: When Atom Size Instead of Electronegativity Difference Determines Trend in Bond Strength

We have quantum chemically analyzed element-element bonds of archetypal Hn X-YHn molecules (X, Y=C, N, O, F, Si, P, S, Cl, Br, I), using density functional theory. One purpose is to obtain a set of consistent homolytic bond dissociation energies (BDE) for establishing accurate trends across the periodic table. The main objective is to elucidate the underlying physical factors behind these chemical bonding trends. On one hand, we confirm that, along a period (e. g., from C-C to C-F), bonds strengthen because the electronegativity difference across the bond increases. But, down a period, our findings constitute a paradigm shift. From C-F to C-I, for example, bonds do become weaker, however, not because of the decreasing electronegativity difference. Instead, we show that the effective atom size (via steric Pauli repulsion) is the causal factor behind bond weakening in this series, and behind the weakening in orbital interactions at the equilibrium distance. We discuss the actual bonding mechanism and the importance of analyzing this mechanism as a function of the bond distance.

Shelf-Stable (E)- and (Z)-Vinyl-λ3-chlorane: A Stereospecific Hyper-vinylating Agent

We report the first stereoselective synthesis of stable (E)- and (Z)-β-chlorovinyl-λ³-chlorane via direct mesitylation of 1,2-dichloroethylene with mesityldiazonium tetrakis(pentafluorophenyl)borate under mild reaction conditions. The structure of the (E)-vinyl-λ³-chlorane was established by single-crystal X-ray analysis. Because of the enormously high leaving group ability of the aryl-λ³-chloranyl group, vinyl-λ³-chloranes undergo not only S_NVσ-type reaction with extremely weak nucleophiles such as perfluoroalkanesulfonate, iodobenzene, and aromatic hydrocarbons but also coupling with phenylcopper(I) species.

Substituent effects in the so-called cationπ interaction of benzene and its boron-nitrogen doped analogues: overlooked role of σ-skeleton

Despite massive efforts to pinpoint the substituent effects in the so-called cationπ systems, no consensus has been yet reached on how substituents exercise their effects in the interaction of the aromatic molecule with the metal ion. The π-polarization (the Hunter model) and the direct local effect (the Wheeler-Houk model) are two lines of thought applied to this problem, but the justification of both approaches is based on insufficiently proven assumptions and approximations. In order to shed more light on this issue we propose a new approach which enables us to gauge directly the energetic trends resulting from the interaction of the ring with the cation. In our method we add one more partitioning level to the interacting quantum atoms (IQA) scheme and decompose the IQA interaction energies into contributions resulting from σ and π electron densities of the aromatic ring. The new approach, which is named partitioned-IQA, abbreviated as p-IQA, has been applied to complexes of derivatives of benzene or azaborine interacting with a sodium cation. The p-IQA approach reveals that in these systems both σ and π electronic moieties are polarized. Interestingly, for the majority of cases the σ-polarization outweighs the π one, contrary to the Hunter model. However, the Wheeler-Houk model is not precise, either, since the σ-polarization shows some degree of non-locality. In addition, the substituents are found to have a negligible influence on the ring orbital-overlapping capability, i.e. the covalency. Therefore, the substituent effect in the cationπ interaction is a nonlocal classical effect, indicating that neither Hunter model nor Wheeler-Houk model is able to fully describe all the aspects of the substituent effects. The p-IQA conclusions for the considered systems have been compared with the results from the functional-group SAPT (F-SAPT) method. We believe that the presented partitioning in the IQA framework will provide a deeper insight into the substituent effects in the cationπ interactions, which is beyond the σ-π atomic charge population separation.

How the Arrangement of Alkyl Substituents Affects the Stability of Delocalized Carbocations

G-4 calculations are used to explore which carbon atoms of methylated butadienes, methylated cyclopentadienes, and methylated benzenes are most readily protonated to yield delocalized allyl and pentadienyl cations. While it is not surprising that alkylation of the positions bearing formal positive charge stabilizes these cations, several other effects are less obvious. First, alkylation of positions in the delocalized cation that do not bear formal charge is beneficial, to an extent about a quarter to a third as great as at charged positions. Second, alkylation of the position receiving the proton disfavors protonation. Finally, at least in the acyclic systems, the more symmetrical substitution pattern that is 2° at both ends is moderately preferred to the less symmetrical pattern that is 3° at one end and 1° at the other. Taking all three of these factors into account, as well as substitution at the formally charged centers, models the stability of all 94 delocalized cations quite well.

Computational study on thermochemical properties for perhalogenated methanols (CX3OH) (X = F, Cl, Br)

The perhalogenated methanols (CX3OH; X = F, Cl, and Br) are found in the atmosphere as products of the degradation of halocarbons. The thermochemical properties for these molecules have been calculated at the HF, MP2, and B3LYP levels of theories in conjunction with six different basis sets as well as at G3MP2 and CBS-QB3. Calculated properties include the gas-phase enthalpies of formation (ΔfH(0)), gas-phase acidities (ΔacidG(0)), gas-phase proton affinity, and bond dissociation energies of the C-O and O-H bonds of CX3OH. Excellent agreement is found between the results obtained using G3MP2 and CBS-QB3 methods and the available experimental data. The results obtained using MP2 are more consistent with the experimental, G3MP2, and CBS-QB3 values than those computed at B3LYP. In general, the 6-311+G(d,p) basis set when combined with the HF or MP2 level of theory produced better results than other basis sets considered in this study.

Inherent and transferable stabilization energies of carbon- and heteroatom-centred radicals on the same relative scale and their applications

Accurate G3(MP2)-RAD calculations are used to predict 264 R-H, R-CH3, R-Cl and R-R bond dissociation energies for a wide-ranging test set of carbon and non-carbon centred R˙ radicals. The data are used to calculate a set of inherent and transferrable radical stabilization energies, denoted RSEEt, which ranks the inherent stability of the 66 radicals studied on the same relative scale, irrespective of the nature of the radical centre. The Pauling electronegativity parameter for each radical is also calculated from the same data, along with the radical's inherent bonding ability D[R-R]calc. This latter quantity is defined as the R-R bond dissociation energy expected in the absence of direct steric or resonance interactions that are present in R-R but absent in R-CH3 and R-Cl. We show that the differences between D[R-R] and D[R-R]calc are typically very small except when R is sterically bulky, or there is a chain of (hyper)conjugation across the R-R bond. In such cases the difference between D[R-R] and D[R-R]calc provides a convenient means of quantifying the stabilization or destabilization of R-R due to these interactions. The predictability of the scheme is demonstrated by using these radical stabilities to calculate R-R' bond dissociation energies for 234 combinations of the 66 radicals studied, chosen to exclude steric or resonance interactions in the R-R' bond. The predicted bond energies lie within an average of 1.6 kcal mol(-1) from directly measured or calculated literature values.

Probing the Electronic Structure of Peptide Bonds Using Methyl Groups

The observed V3 torsional barriers measured by microwave spectroscopy for nine methyl groups attached alpha to peptide bond linkages in five gas-phase biomimetics have been found to differ considerably from one molecule to the next and even depend on the position of substitution, being sensitive to structural changes at the other end of the peptide bond. In the search for an explanation for these results, ab initio calculations have been performed at the HF/6-311++G(d,p) level of theory and interpreted in terms of the natural bond orbitals and resonance structures of the peptide bond. These calculations reveal that resonance delocalization in peptide bonds is influenced by methyl conformation through the coupling of vicinal sigma to sigma* orbital interactions with the n to pi*. Thus, CN double-bond character increases (and CO double-bond character decreases) as the methyl group is rotated from the syn to the anti position. A quasilinear correlation exists between the barriers to internal rotation of attached methyl groups and the relative importance of the two principal resonance structures that contribute to the peptide bond.

Resonance structures of the amide bond: the advantages of planarity

Delocalization indexes based on magnitudes derived from electron-pair densities are demonstrated to be useful indicators of electron resonance in amides. These indexes, based on the integration of the two-electron density matrix over the atomic basins defined through the zero-flux condition, have been calculated for a series of amides at the B3LYP/6-31+G* level of theory. These quantities, which can be viewed as a measure of the sharing of electrons between atoms, behave in concordance with the traditional resonance model, even though they are integrated in Bader atomic basins. Thus, the use of these quantities overcomes contradictory results from analyses of atomic charges, yet keeps the theoretical appeal of using nonarbitrary atomic partitions and unambiguously defined functions such as densities and pair densities. Moreover, for a large data set consisting of 24 amides plus their corresponding rotational transition states, a linear relation was found between the rotational barrier for the amide and the delocalization index between the nitrogen and oxygen atoms, indicating that this parameter can be used as an ideal physical-chemical indicator of the electron resonance in amides.

“Amide Resonance” Correlates with a Breadth of C−N Rotation Barriers

Complete basis set calculations (CBS-QB3) were used to compute the CN rotation barriers for acetamide and eight related compounds, including acetamide enolate and O-protonated acetamide. Natural resonance theory analysis was employed to quantify the "amide resonance" contribution to ground-state electronic structures. A range of rotation barriers, spanning nearly 50 kcal/mol, correlates well to the ground-state resonance weights without the need to account for transition-state effects. Use of appropriate model compounds is crucial to gain an understanding of the structural and electronic changes taking place during rotation of the CN bond in acetamide. The disparate changes in bond length (DeltarCO << DeltarCN) are found to be consonant with the resonance model. Similarly, charge differences are consistent with donation from the nitrogen lone pair electrons into the carbonyl pi* orbital. Despite recent attacks on the resonance model, these findings demonstrate it to be a sophisticated and highly predictive tool in the chemist's arsenal.

Correlation of the Rates of Solvolysis of Benzoyl Fluoride and a Consideration of Leaving-Group Effects

The specific rates of solvolysis of benzoyl fluoride have been determined at 25.0 degrees C in 37 pure and binary solvents. Together with seven values from the literature, these give a satisfactory correlation over the full range of solvents when the extended Grunwald-Winstein equation is applied. The sensitivities to changes in solvent nucleophilicity and solvent ionizing power are very similar to those for octyl fluoroformate, suggesting that the addition step of an addition-elimination mechanism is rate determining. In the solvent-composition region where benzoyl chloride also shows bimolecular solvolysis, the appreciable k(Cl)/k(F) values are proposed as being primarily due to a more efficient ground-state stabilization for the fluoride.

Vinyl-vinyl coupling on late transition metals through C-C reductive elimination mechanism. A computational study

A detailed density functional study was performed for the vinyl-vinyl reductive elimination reaction from bis-sigma-vinyl complexes [M(CH=CH(2))(2)X(n)]. It was shown that the activity of these complexes decreases in the following order: Pd(IV), Pd(II) > Pt(IV), Pt(II), Rh(III) > Ir(III), Ru(II), Os(II). The effects of different ligands X were studied for both platinum and palladium complexes, which showed that activation barriers for C-C bond formation reaction decrease in the following order: X = Cl > Br, NH(3) > I > PH(3). Steric effects induced either by the ligands X or by substituents on the vinyl group were also examined. In addition, the major factors responsible for stereoselectivity control on the final product formation stage and possible involvement of asymmetric coupling pathways are reported. In all cases DeltaE, DeltaH, DeltaG, and DeltaG(aq) energy surfaces were calculated and analyzed. The solvent effect calculation shows that in a polar medium halogen complexes may undergo a reductive elimination reaction almost as easily as compounds with phosphine ligands.

Besides N(2), What Is the Most Stable Molecule Composed Only of Nitrogen Atoms?

Polynitrogen molecules have been studied systematically at high levels of ab initio and density functional theory (DFT). Besides N(2), the thermodynamically most stable N(n)() molecules, located with the help of a newly developed energy increment system, are all based on pentazole units. The geometric, energetic, and magnetic criteria establish pentazole (2) and its anion (3) to be as aromatic as their isoelectronic analogues, e.g., furan, pyrrole, and the cyclopentadienyl anion. The bond lengths in 2 and 3 are equalized; both have large aromatic stabilization energies (ASE) and also substantial magnetic susceptibility exaltations (Lambda). The C(s)() symmetric azidopentazole (14), a candidate for experimental investigation, is the lowest energy N(8) isomer but is still 196.7 kcal/mol higher in energy than four N(2) molecules. Octaazapentalene (12) with 10 pi electrons also is aromatic. The D(2)(d)() symmetric bispentazole (21) is the lowest energy N(10) minimum but is 260 kcal/mol higher in energy than five N(2) molecules. For strain-free molecules, the average deviation is +/-2.6 kcal/mol between the DFT energies and those based on the increment scheme. The increment scheme also provides estimates of the strain energies of polynitrogen compounds, e.g., tetraazatetrahedrane (8, 48.2 kcal/mol), octaazacubane (11, 192.6 kcal/mol), and N(20) (27, 294.6 kcal/mol), and is useful in searching for new high-energy-high-density materials.