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Zheng M, Chu Y, Wang Q, Wang Y, Xu J, Deng F. Advanced solid-state NMR spectroscopy and its applications in zeolite chemistry. PROGRESS IN NUCLEAR MAGNETIC RESONANCE SPECTROSCOPY 2024; 140-141:1-41. [PMID: 38705634 DOI: 10.1016/j.pnmrs.2023.11.001] [Citation(s) in RCA: 0] [Impact Index Per Article: 0] [Reference Citation Analysis] [Abstract] [Key Words] [Track Full Text] [Subscribe] [Scholar Register] [Received: 03/15/2023] [Revised: 11/10/2023] [Accepted: 11/13/2023] [Indexed: 05/07/2024]
Abstract
Solid-state NMR spectroscopy (ssNMR) can provide details about the structure, host-guest/guest-guest interactions and dynamic behavior of materials at atomic length scales. A crucial use of ssNMR is for the characterization of zeolite catalysts that are extensively employed in industrial catalytic processes. This review aims to spotlight the recent advancements in ssNMR spectroscopy and its application to zeolite chemistry. We first review the current ssNMR methods and techniques that are relevant to characterize zeolite catalysts, including advanced multinuclear and multidimensional experiments, in situ NMR techniques and hyperpolarization methods. Of these, the methodology development on half-integer quadrupolar nuclei is emphasized, which represent about two-thirds of stable NMR-active nuclei and are widely present in catalytic materials. Subsequently, we introduce the recent progress in understanding zeolite chemistry with the aid of these ssNMR methods and techniques, with a specific focus on the investigation of zeolite framework structures, zeolite crystallization mechanisms, surface active/acidic sites, host-guest/guest-guest interactions, and catalytic reaction mechanisms.
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Affiliation(s)
- Mingji Zheng
- National Centre for Magnetic Resonance in Wuhan, State Key Laboratory of Magnetic Resonance and Atomic and Molecular Physics, Wuhan Institute of Physics and Mathematics, Innovation Academy for Precision Measurement Science and Technology, Chinese Academy of Sciences, Wuhan 430071, China; University of Chinese Academy of Sciences, Beijing 100049, China
| | - Yueying Chu
- National Centre for Magnetic Resonance in Wuhan, State Key Laboratory of Magnetic Resonance and Atomic and Molecular Physics, Wuhan Institute of Physics and Mathematics, Innovation Academy for Precision Measurement Science and Technology, Chinese Academy of Sciences, Wuhan 430071, China
| | - Qiang Wang
- National Centre for Magnetic Resonance in Wuhan, State Key Laboratory of Magnetic Resonance and Atomic and Molecular Physics, Wuhan Institute of Physics and Mathematics, Innovation Academy for Precision Measurement Science and Technology, Chinese Academy of Sciences, Wuhan 430071, China.
| | - Yongxiang Wang
- National Centre for Magnetic Resonance in Wuhan, State Key Laboratory of Magnetic Resonance and Atomic and Molecular Physics, Wuhan Institute of Physics and Mathematics, Innovation Academy for Precision Measurement Science and Technology, Chinese Academy of Sciences, Wuhan 430071, China; University of Chinese Academy of Sciences, Beijing 100049, China
| | - Jun Xu
- National Centre for Magnetic Resonance in Wuhan, State Key Laboratory of Magnetic Resonance and Atomic and Molecular Physics, Wuhan Institute of Physics and Mathematics, Innovation Academy for Precision Measurement Science and Technology, Chinese Academy of Sciences, Wuhan 430071, China
| | - Feng Deng
- National Centre for Magnetic Resonance in Wuhan, State Key Laboratory of Magnetic Resonance and Atomic and Molecular Physics, Wuhan Institute of Physics and Mathematics, Innovation Academy for Precision Measurement Science and Technology, Chinese Academy of Sciences, Wuhan 430071, China.
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Xiao H, Zhang Z, Kang H, Yang J. Solid-State NMR Double-Quantum Dipolar Recoupling Enhanced by Additional Phase Modulation. Chemphyschem 2023; 24:e202300141. [PMID: 37309720 DOI: 10.1002/cphc.202300141] [Citation(s) in RCA: 0] [Impact Index Per Article: 0] [Reference Citation Analysis] [Abstract] [Key Words] [Grants] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Received: 02/23/2023] [Revised: 06/02/2023] [Accepted: 06/12/2023] [Indexed: 06/14/2023]
Abstract
Additional phase modulation (APM) is proposed to generally enhance the theoretical efficiency of homonuclear double-quantum (DQ) recoupling in solid-state NMR. APM applies an additional phase list to DQ recoupling in steps of an entire block. The sine-based phase list can enhance the theoretical efficiency by 15-30 %, from 0.52 to 0.68 (non-γ-encoded recoupling) or from 0.73 to 0.84 (γ-encoded recoupling), with doubled recoupling time. The genetic-algorithm (GA) optimized APM can adiabatically enhance the efficiency to ∼1.0 at longer times. The concept of APM has been tested on SPR-51 , BaBa, and SPR-31 , which represent γ-encoded recoupling, non-γ-encoded recoupling, and another kind beyond the former two, respectively. Simulations reveal that enhancements from APM are due to the activation of more crystallites in the powder. Experiments on 2,3-13 C labeled alanine are used to validate the APM recoupling. This new concept shall shed light on developing more efficient homonuclear recoupling methods.
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Affiliation(s)
- Hang Xiao
- National Center for Magnetic Resonance in Wuhan, State Key Laboratory of Magnetic Resonance and Atomic and Molecular Physics, Wuhan Institute of Physics and Mathematics, Innovation Academy for Precision Measurement Science and Technology, Chinese Academy of Sciences, Wuhan, Hubei, 430071, China
- University of Chinese Academy of Sciences, Beijing, 100049, China
| | - Zhengfeng Zhang
- National Center for Magnetic Resonance in Wuhan, State Key Laboratory of Magnetic Resonance and Atomic and Molecular Physics, Wuhan Institute of Physics and Mathematics, Innovation Academy for Precision Measurement Science and Technology, Chinese Academy of Sciences, Wuhan, Hubei, 430071, China
- Wuhan National Laboratory for Optoelectronics, Huazhong University of Science and Technology, Wuhan, Hubei, 430074, China
| | - Huimin Kang
- National Center for Magnetic Resonance in Wuhan, State Key Laboratory of Magnetic Resonance and Atomic and Molecular Physics, Wuhan Institute of Physics and Mathematics, Innovation Academy for Precision Measurement Science and Technology, Chinese Academy of Sciences, Wuhan, Hubei, 430071, China
| | - Jun Yang
- National Center for Magnetic Resonance in Wuhan, State Key Laboratory of Magnetic Resonance and Atomic and Molecular Physics, Wuhan Institute of Physics and Mathematics, Innovation Academy for Precision Measurement Science and Technology, Chinese Academy of Sciences, Wuhan, Hubei, 430071, China
- Wuhan National Laboratory for Optoelectronics, Huazhong University of Science and Technology, Wuhan, Hubei, 430074, China
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Nishiyama Y, Hou G, Agarwal V, Su Y, Ramamoorthy A. Ultrafast Magic Angle Spinning Solid-State NMR Spectroscopy: Advances in Methodology and Applications. Chem Rev 2023; 123:918-988. [PMID: 36542732 PMCID: PMC10319395 DOI: 10.1021/acs.chemrev.2c00197] [Citation(s) in RCA: 33] [Impact Index Per Article: 33.0] [Reference Citation Analysis] [Abstract] [MESH Headings] [Grants] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Indexed: 12/24/2022]
Abstract
Solid-state NMR spectroscopy is one of the most commonly used techniques to study the atomic-resolution structure and dynamics of various chemical, biological, material, and pharmaceutical systems spanning multiple forms, including crystalline, liquid crystalline, fibrous, and amorphous states. Despite the unique advantages of solid-state NMR spectroscopy, its poor spectral resolution and sensitivity have severely limited the scope of this technique. Fortunately, the recent developments in probe technology that mechanically rotate the sample fast (100 kHz and above) to obtain "solution-like" NMR spectra of solids with higher resolution and sensitivity have opened numerous avenues for the development of novel NMR techniques and their applications to study a plethora of solids including globular and membrane-associated proteins, self-assembled protein aggregates such as amyloid fibers, RNA, viral assemblies, polymorphic pharmaceuticals, metal-organic framework, bone materials, and inorganic materials. While the ultrafast-MAS continues to be developed, the minute sample quantity and radio frequency requirements, shorter recycle delays enabling fast data acquisition, the feasibility of employing proton detection, enhancement in proton spectral resolution and polarization transfer efficiency, and high sensitivity per unit sample are some of the remarkable benefits of the ultrafast-MAS technology as demonstrated by the reported studies in the literature. Although the very low sample volume and very high RF power could be limitations for some of the systems, the advantages have spurred solid-state NMR investigation into increasingly complex biological and material systems. As ultrafast-MAS NMR techniques are increasingly used in multidisciplinary research areas, further development of instrumentation, probes, and advanced methods are pursued in parallel to overcome the limitations and challenges for widespread applications. This review article is focused on providing timely comprehensive coverage of the major developments on instrumentation, theory, techniques, applications, limitations, and future scope of ultrafast-MAS technology.
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Affiliation(s)
- Yusuke Nishiyama
- JEOL Ltd., Akishima, Tokyo196-8558, Japan
- RIKEN-JEOL Collaboration Center, Yokohama, Kanagawa230-0045, Japan
| | - Guangjin Hou
- State Key Laboratory of Catalysis, Dalian National Laboratory for Clean Energy, 2011-Collaborative Innovation Center of Chemistry for Energy Materials, Dalian Institute of Chemical Physics, Chinese Academy of Sciences, Zhongshan Road 457, Dalian116023, China
| | - Vipin Agarwal
- Tata Institute of Fundamental Research, Sy. No. 36/P, Gopanpally, Hyderabad500 046, India
| | - Yongchao Su
- Analytical Research and Development, Merck & Co., Inc., Rahway, New Jersey07065, United States
| | - Ayyalusamy Ramamoorthy
- Biophysics, Department of Chemistry, Biomedical Engineering, Macromolecular Science and Engineering, Michigan Neuroscience Institute, University of Michigan, Ann Arbor, Michigan41809-1055, United States
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Lusky OS, Goldbourt A. Pulse induced resonance with angular dependent total enhancement of multi-dimensional solid-state NMR correlation spectra. JOURNAL OF MAGNETIC RESONANCE (SAN DIEGO, CALIF. : 1997) 2022; 338:107191. [PMID: 35325706 DOI: 10.1016/j.jmr.2022.107191] [Citation(s) in RCA: 0] [Impact Index Per Article: 0] [Reference Citation Analysis] [Abstract] [Key Words] [MESH Headings] [Track Full Text] [Subscribe] [Scholar Register] [Received: 12/05/2021] [Revised: 03/02/2022] [Accepted: 03/04/2022] [Indexed: 06/14/2023]
Abstract
We demonstrate a new resonance condition that obeys the relation Δδ=nνR/2, where Δδ is the chemical shift difference between two homonuclear-coupled spins, νR is the magic-angle spinning speed and n is an integer. This modulation on the rotational resonance recoupling condition is obtained by the application of rotor-synchronous 1H pulses when at least one proton is dipolar-coupled to one of the homonuclear spins. We suggest a new experimental scheme entitled 'pulse induced resonance with angular dependent total enhancement' (PIRATE) that can enhance proton-driven spin diffusion by the application of a single 1H pulse every rotor period. Experimental evidence is demonstrated on the two carbon spins of glycine and on the Y21M mutant of fd bacteriophage virus. Numerical simulations reveal the existence of the resonances and report on the important interactions governing these phenomena.
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Affiliation(s)
- Orr Simon Lusky
- School of Chemistry, Faculty of Exact Sciences, Tel Aviv University, Tel Aviv, Israel
| | - Amir Goldbourt
- School of Chemistry, Faculty of Exact Sciences, Tel Aviv University, Tel Aviv, Israel.
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Ahlawat S, Mote KR, Lakomek NA, Agarwal V. Solid-State NMR: Methods for Biological Solids. Chem Rev 2022; 122:9643-9737. [PMID: 35238547 DOI: 10.1021/acs.chemrev.1c00852] [Citation(s) in RCA: 3] [Impact Index Per Article: 1.5] [Reference Citation Analysis] [Abstract] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Indexed: 02/08/2023]
Abstract
In the last two decades, solid-state nuclear magnetic resonance (ssNMR) spectroscopy has transformed from a spectroscopic technique investigating small molecules and industrial polymers to a potent tool decrypting structure and underlying dynamics of complex biological systems, such as membrane proteins, fibrils, and assemblies, in near-physiological environments and temperatures. This transformation can be ascribed to improvements in hardware design, sample preparation, pulsed methods, isotope labeling strategies, resolution, and sensitivity. The fundamental engagement between nuclear spins and radio-frequency pulses in the presence of a strong static magnetic field is identical between solution and ssNMR, but the experimental procedures vastly differ because of the absence of molecular tumbling in solids. This review discusses routinely employed state-of-the-art static and MAS pulsed NMR methods relevant for biological samples with rotational correlation times exceeding 100's of nanoseconds. Recent developments in signal filtering approaches, proton methodologies, and multiple acquisition techniques to boost sensitivity and speed up data acquisition at fast MAS are also discussed. Several examples of protein structures (globular, membrane, fibrils, and assemblies) solved with ssNMR spectroscopy have been considered. We also discuss integrated approaches to structurally characterize challenging biological systems and some newly emanating subdisciplines in ssNMR spectroscopy.
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Affiliation(s)
- Sahil Ahlawat
- Tata Institute of Fundamental Research Hyderabad, Survey No. 36/P Gopanpally, Serilingampally, Ranga Reddy District, Hyderabad 500046, Telangana, India
| | - Kaustubh R Mote
- Tata Institute of Fundamental Research Hyderabad, Survey No. 36/P Gopanpally, Serilingampally, Ranga Reddy District, Hyderabad 500046, Telangana, India
| | - Nils-Alexander Lakomek
- University of Düsseldorf, Institute for Physical Biology, Universitätsstraße 1, 40225 Düsseldorf, Germany
| | - Vipin Agarwal
- Tata Institute of Fundamental Research Hyderabad, Survey No. 36/P Gopanpally, Serilingampally, Ranga Reddy District, Hyderabad 500046, Telangana, India
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Mathew R, Stevensson B, Edén M. Refined Structures of O-Phospho-l-serine and Its Calcium Salt by New Multinuclear Solid-State NMR Crystallography Methods. J Phys Chem B 2021; 125:10985-11004. [PMID: 34553936 PMCID: PMC8503883 DOI: 10.1021/acs.jpcb.1c05587] [Citation(s) in RCA: 2] [Impact Index Per Article: 0.7] [Reference Citation Analysis] [Abstract] [MESH Headings] [Grants] [Track Full Text] [Download PDF] [Figures] [Journal Information] [Subscribe] [Scholar Register] [Received: 06/24/2021] [Indexed: 12/17/2022]
Abstract
O-phospho-l-serine (Pser) and its Ca salt, Ca[O-phospho-l-serine]·H2O (CaPser), play important roles for bone mineralization and were recently also proposed to account for the markedly improved bone-adhesive properties of Pser-doped calcium phosphate-based cements for biomedical implants. However, the hitherto few proposed structural models of Pser and CaPser were obtained by X-ray diffraction, thereby leaving the proton positions poorly defined. Herein, we refine the Pser and CaPser structures by density functional theory (DFT) calculations and contrast them with direct interatomic-distance constraints from two-dimensional (2D) nuclear magnetic resonance (NMR) correlation experimentation at fast magic-angle spinning (MAS), encompassing double-quantum-single-quantum (2Q-1Q) 1H NMR along with heteronuclear 13C{1H} and 31P{1H} correlation NMR experiments. The Pser and CaPser structures before and after refinements by DFT were validated against sets of NMR-derived effective 1H-1H, 1H-31P, and 1H-13C distances, which confirmed the improved accuracy of the refined structures. Each distance set was derived from one sole 2D NMR experiment applied to a powder without isotopic enrichment. The distances were extracted without invoking numerical spin-dynamics simulations or approximate phenomenological models. We highlight the advantages and limitations of the new distance-extraction procedure. Isotropic 1H, 13C, and 31P chemical shifts obtained by DFT calculations using the gauge including projector augmented wave (GIPAW) method agreed very well with the experimental results. We discuss the isotropic and anisotropic 13C and 31P chemical-shift parameters in relation to the previous literature, where most data on CaPser are reported herein for the first time.
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Affiliation(s)
- Renny Mathew
- Department of Materials and Environmental
Chemistry, Stockholm University, SE-106 91 Stockholm, Sweden
| | - Baltzar Stevensson
- Department of Materials and Environmental
Chemistry, Stockholm University, SE-106 91 Stockholm, Sweden
| | - Mattias Edén
- Department of Materials and Environmental
Chemistry, Stockholm University, SE-106 91 Stockholm, Sweden
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7
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Ji Y, Liang L, Bao X, Hou G. Recent progress in dipolar recoupling techniques under fast MAS in solid-state NMR spectroscopy. SOLID STATE NUCLEAR MAGNETIC RESONANCE 2021; 112:101711. [PMID: 33508579 DOI: 10.1016/j.ssnmr.2020.101711] [Citation(s) in RCA: 8] [Impact Index Per Article: 2.7] [Reference Citation Analysis] [Abstract] [Key Words] [MESH Headings] [Track Full Text] [Subscribe] [Scholar Register] [Received: 09/12/2020] [Revised: 12/04/2020] [Accepted: 12/05/2020] [Indexed: 06/12/2023]
Abstract
With the recent advances in NMR hardware and probe design technology, magic-angle spinning (MAS) rates over 100 kHz are accessible now, even on commercial solid NMR probes. Under such fast MAS conditions, excellent spectral resolution has been achieved by efficient suppression of anisotropic interactions, which also opens an avenue to the proton-detected NMR experiments in solids. Numerous methods have been developed to take full advantage of fast MAS during the last decades. Among them, dipolar recoupling techniques under fast MAS play vital roles in the determination of the molecular structure and dynamics, and are also key elements in multi-dimensional correlation NMR experiments. Herein, we review the dipolar recoupling techniques, especially those developed in the past two decades for fast-to-ultrafast MAS conditions. A major focus for our discussion is the ratio of RF field strength (in frequency) to MAS frequency, ν1/νr, in different pulse sequences, which determines whether these dipolar recoupling techniques are suitable for NMR experiments under fast MAS conditions. Systematic comparisons are made among both heteronuclear and homonuclear dipolar recoupling schemes. In addition, the schemes developed specially for proton-detection NMR experiments under ultrafast MAS conditions are highlighted as well.
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Affiliation(s)
- Yi Ji
- State Key Laboratory of Catalysis, National Laboratory for Clean Energy, 2011-Collaborative Innovation Center of Chemistry for Energy Materials, Dalian Institute of Chemical Physics, Chinese Academy of Sciences, Zhongshan Road 457, Dalian, 116023, China; University of Chinese Academy of Sciences, Beijing, 100049, China
| | - Lixin Liang
- State Key Laboratory of Catalysis, National Laboratory for Clean Energy, 2011-Collaborative Innovation Center of Chemistry for Energy Materials, Dalian Institute of Chemical Physics, Chinese Academy of Sciences, Zhongshan Road 457, Dalian, 116023, China; University of Chinese Academy of Sciences, Beijing, 100049, China
| | - Xinhe Bao
- State Key Laboratory of Catalysis, National Laboratory for Clean Energy, 2011-Collaborative Innovation Center of Chemistry for Energy Materials, Dalian Institute of Chemical Physics, Chinese Academy of Sciences, Zhongshan Road 457, Dalian, 116023, China
| | - Guangjin Hou
- State Key Laboratory of Catalysis, National Laboratory for Clean Energy, 2011-Collaborative Innovation Center of Chemistry for Energy Materials, Dalian Institute of Chemical Physics, Chinese Academy of Sciences, Zhongshan Road 457, Dalian, 116023, China.
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8
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Yu Y, Keil P, Stevensson B, Hansen MR, Edén M. Assessment of new symmetry-based dipolar recoupling schemes for homonuclear magnetization exchange between quadrupolar nuclei in two-dimensional correlation MAS NMR. JOURNAL OF MAGNETIC RESONANCE (SAN DIEGO, CALIF. : 1997) 2020; 316:106734. [PMID: 32590307 DOI: 10.1016/j.jmr.2020.106734] [Citation(s) in RCA: 0] [Impact Index Per Article: 0] [Reference Citation Analysis] [Abstract] [Key Words] [Track Full Text] [Subscribe] [Scholar Register] [Received: 02/04/2020] [Revised: 04/13/2020] [Accepted: 04/15/2020] [Indexed: 06/11/2023]
Abstract
We provide an extensive experimental and numerical evaluation of MQ-phase (S)M supercycles with M={3,4} of three groups of symmetry-based homonuclear dipolar recoupling rf-pulse sequences, [Formula: see text] , for establishing proximities among half-integer spin quadrupolar nuclei under moderately fast magic-angle-spinning (MAS) conditions in single-quantum-single-quantum (1Q-1Q) correlation NMR experiments. The relative merits of the (S)M schemes for variations in resonance offsets and rf-amplitude errors were assessed by numerically simulated magnetization transfers in spin-3/2 pairs with variable isotropic chemical shifts and quadrupolar coupling constants. Experimental demonstrations of 23Na (spin-3/2) NMR on Na2MoO4·2H2O and 27Al (spin-5/2) NMR on AlPO-CJ19 [(NH4)2Al4(PO4)4HPO4·H2O] are presented at 14.1 T and 24 kHz MAS. We recommend using the (SR221)3 or (SR221)4 supercycles for samples that exhibit small chemical-shift dispersions (<3 kHz), and any (SRNNN/2)3 scheme with N⩾10 for larger spreads of isotropic chemical shifts. However, because the (SRNNN/2)3 sequences recouple heteronuclear dipolar interactions, their application to proton-bearing samples requires high-power proton decoupling during the mixing period. Alternatively, the (SR241)3 and (SR241)4 schemes may be employed in the absence of proton decoupling, but with poorer compensation to resonance-offsets and rf-amplitude errors.
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Affiliation(s)
- Yang Yu
- Department of Materials and Environmental Chemistry, Stockholm University, SE-106 91 Stockholm, Sweden
| | - Philipp Keil
- Institute for Physical Chemistry, Westfälische Wilhelms-Universität Münster, DE-48 149 Münster, Germany
| | - Baltzar Stevensson
- Department of Materials and Environmental Chemistry, Stockholm University, SE-106 91 Stockholm, Sweden
| | - Michael Ryan Hansen
- Institute for Physical Chemistry, Westfälische Wilhelms-Universität Münster, DE-48 149 Münster, Germany
| | - Mattias Edén
- Department of Materials and Environmental Chemistry, Stockholm University, SE-106 91 Stockholm, Sweden.
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9
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Sørensen JJ, Nyemann JS, Motzoi F, Sherson J, Vosegaard T. Optimization of pulses with low bandwidth for improved excitation of multiple-quantum coherences in NMR of quadrupolar nuclei. J Chem Phys 2020; 152:054104. [DOI: 10.1063/1.5141384] [Citation(s) in RCA: 8] [Impact Index Per Article: 2.0] [Reference Citation Analysis] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Indexed: 11/14/2022] Open
Affiliation(s)
- Jens Jakob Sørensen
- Department of Physics and Astronomy, Aarhus University, Ny Munkegade 120, 8000 Aarhus C, Denmark
| | - Jacob Søgaard Nyemann
- Department of Physics and Astronomy, Aarhus University, Ny Munkegade 120, 8000 Aarhus C, Denmark
- Interdisciplinary Nanoscience Center and Department of Chemistry, Aarhus University, Gustav Wieds Vej 14, 8000 Aarhus C, Denmark
| | - Felix Motzoi
- Department of Physics and Astronomy, Aarhus University, Ny Munkegade 120, 8000 Aarhus C, Denmark
- Forschungszentrum Jülich, Institute of Quantum Control (PGI-8), D-52425 Jülich, Germany
| | - Jacob Sherson
- Department of Physics and Astronomy, Aarhus University, Ny Munkegade 120, 8000 Aarhus C, Denmark
| | - Thomas Vosegaard
- Interdisciplinary Nanoscience Center and Department of Chemistry, Aarhus University, Gustav Wieds Vej 14, 8000 Aarhus C, Denmark
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10
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Thureau P, Juramy M, Ziarelli F, Viel S, Mollica G. Brute-force solvent suppression for DNP studies of powders at natural isotopic abundance. SOLID STATE NUCLEAR MAGNETIC RESONANCE 2019; 99:15-19. [PMID: 30836289 DOI: 10.1016/j.ssnmr.2019.02.002] [Citation(s) in RCA: 7] [Impact Index Per Article: 1.4] [Reference Citation Analysis] [Abstract] [Key Words] [Track Full Text] [Subscribe] [Scholar Register] [Received: 12/14/2018] [Revised: 02/15/2019] [Accepted: 02/15/2019] [Indexed: 06/09/2023]
Abstract
A method based on highly concentrated radical solutions is investigated for the suppression of the NMR signals arising from solvents that are usually used for dynamic nuclear polarization experiments. The presented method is suitable in the case of powders, which are impregnated with a radical-containing solution. It is also demonstrated that the intensity and the resolution of the signals due to the sample of interest is not affected by the high concentration of radicals. The method proposed here is therefore valuable when sensitivity is of the utmost importance, namely samples at natural isotopic abundance.
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Affiliation(s)
| | - Marie Juramy
- Aix Marseille Univ, CNRS, ICR, Marseille, France
| | - Fabio Ziarelli
- Aix Marseille Univ, CNRS, Centrale Marseille, FSCM, Marseille, France
| | - Stephane Viel
- Aix Marseille Univ, CNRS, ICR, Marseille, France; Institut Universitaire de France, Paris, France
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11
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Zhang Z, Liu H, Deng J, Tycko R, Yang J. Optimization of band-selective homonuclear dipolar recoupling in solid-state NMR by a numerical phase search. J Chem Phys 2019; 150:154201. [PMID: 31005077 DOI: 10.1063/1.5092986] [Citation(s) in RCA: 7] [Impact Index Per Article: 1.4] [Reference Citation Analysis] [Abstract] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Indexed: 11/14/2022] Open
Abstract
Spin polarization transfers among aliphatic 13C nuclei, especially 13Cα-13Cβ transfers, permit correlations of their nuclear magnetic resonance (NMR) frequencies that are essential for signal assignments in multidimensional solid-state NMR of proteins. We derive and demonstrate a new radio-frequency (RF) excitation sequence for homonuclear dipolar recoupling that enhances spin polarization transfers among aliphatic 13C nuclei at moderate magic-angle spinning (MAS) frequencies. The phase-optimized recoupling sequence with five π pulses per MAS rotation period (denoted as PR5) is derived initially from systematic numerical simulations in which only the RF phases are varied. Subsequent theoretical analysis by average Hamiltonian theory explains the favorable properties of numerically optimized phase schemes. The high efficiency of spin polarization transfers in simulations is preserved in experiments, in part because the RF field amplitude in PR5 is only 2.5 times the MAS frequency so that relatively low 1H decoupling powers are required. Experiments on a microcrystalline sample of the β1 immunoglobulin binding domain of protein G demonstrate an average enhancement factor of 1.6 for 13Cα → 13Cβ polarization transfers, compared to the standard 13C-13C spin-diffusion method, implying a two-fold time saving in relevant 2D and 3D experiments.
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Affiliation(s)
- Zhengfeng Zhang
- Key Laboratory of Magnetic Resonance in Biological Systems, State Key Laboratory of Magnetic Resonance and Atomic and Molecular Physics, National Center for Magnetic Resonance in Wuhan, Wuhan Institute of Physics and Mathematics, Chinese Academy of Sciences, Wuhan 430071, People's Republic of China
| | - Hui Liu
- Key Laboratory of Magnetic Resonance in Biological Systems, State Key Laboratory of Magnetic Resonance and Atomic and Molecular Physics, National Center for Magnetic Resonance in Wuhan, Wuhan Institute of Physics and Mathematics, Chinese Academy of Sciences, Wuhan 430071, People's Republic of China
| | - Jing Deng
- Key Laboratory of Magnetic Resonance in Biological Systems, State Key Laboratory of Magnetic Resonance and Atomic and Molecular Physics, National Center for Magnetic Resonance in Wuhan, Wuhan Institute of Physics and Mathematics, Chinese Academy of Sciences, Wuhan 430071, People's Republic of China
| | - Robert Tycko
- Laboratory of Chemical Physics, National Institute of Diabetes and Digestive and Kidney Diseases, National Institutes of Health, Bethesda, Maryland 20892-0520, USA
| | - Jun Yang
- Key Laboratory of Magnetic Resonance in Biological Systems, State Key Laboratory of Magnetic Resonance and Atomic and Molecular Physics, National Center for Magnetic Resonance in Wuhan, Wuhan Institute of Physics and Mathematics, Chinese Academy of Sciences, Wuhan 430071, People's Republic of China
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12
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Hellwagner J, Sharma K, Tan KO, Wittmann JJ, Meier BH, Madhu PK, Ernst M. Optimizing symmetry-based recoupling sequences in solid-state NMR by pulse-transient compensation and asynchronous implementation. J Chem Phys 2017; 146:244202. [PMID: 28668064 DOI: 10.1063/1.4989542] [Citation(s) in RCA: 3] [Impact Index Per Article: 0.4] [Reference Citation Analysis] [Abstract] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Indexed: 11/14/2022] Open
Abstract
Pulse imperfections like pulse transients and radio-frequency field maladjustment or inhomogeneity are the main sources of performance degradation and limited reproducibility in solid-state nuclear magnetic resonance experiments. We quantitatively analyze the influence of such imperfections on the performance of symmetry-based pulse sequences and describe how they can be compensated. Based on a triple-mode Floquet analysis, we develop a theoretical description of symmetry-based dipolar recoupling sequences, in particular, R26411, calculating first- and second-order effective Hamiltonians using real pulse shapes. We discuss the various origins of effective fields, namely, pulse transients, deviation from the ideal flip angle, and fictitious fields, and develop strategies to counteract them for the restoration of full transfer efficiency. We compare experimental applications of transient-compensated pulses and an asynchronous implementation of the sequence to a supercycle, SR26, which is known to be efficient in compensating higher-order error terms. We are able to show the superiority of R26 compared to the supercycle, SR26, given the ability to reduce experimental error on the pulse sequence by pulse-transient compensation and a complete theoretical understanding of the sequence.
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Affiliation(s)
- Johannes Hellwagner
- Physical Chemistry, ETH Zurich, Vladimir-Prelog-Weg 2, 8093 Zurich, Switzerland
| | - Kshama Sharma
- TIFR Centre for Interdisciplinary Sciences, 21 Brundavan Colony, Narsingi, Hyderabad 500075, India
| | - Kong Ooi Tan
- Physical Chemistry, ETH Zurich, Vladimir-Prelog-Weg 2, 8093 Zurich, Switzerland
| | - Johannes J Wittmann
- Physical Chemistry, ETH Zurich, Vladimir-Prelog-Weg 2, 8093 Zurich, Switzerland
| | - Beat H Meier
- Physical Chemistry, ETH Zurich, Vladimir-Prelog-Weg 2, 8093 Zurich, Switzerland
| | - P K Madhu
- TIFR Centre for Interdisciplinary Sciences, 21 Brundavan Colony, Narsingi, Hyderabad 500075, India
| | - Matthias Ernst
- Physical Chemistry, ETH Zurich, Vladimir-Prelog-Weg 2, 8093 Zurich, Switzerland
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13
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Frantsuzov I, Vasa SK, Ernst M, Brown SP, Zorin V, Kentgens APM, Hodgkinson P. Rationalising Heteronuclear Decoupling in Refocussing Applications of Solid-State NMR Spectroscopy. Chemphyschem 2017; 18:394-405. [PMID: 28111874 PMCID: PMC5396389 DOI: 10.1002/cphc.201601003] [Citation(s) in RCA: 6] [Impact Index Per Article: 0.9] [Reference Citation Analysis] [Abstract] [Key Words] [Track Full Text] [Download PDF] [Figures] [Journal Information] [Subscribe] [Scholar Register] [Received: 09/13/2016] [Revised: 11/07/2016] [Indexed: 12/16/2022]
Abstract
Factors affecting the performance of 1 H heteronuclear decoupling sequences for magic-angle spinning (MAS) NMR spectroscopy of organic solids are explored, as observed by time constants for the decay of nuclear magnetisation under a spin-echo (T2' ). By using a common protocol over a wide range of experimental conditions, including very high magnetic fields and very high radio-frequency (RF) nutation rates, decoupling performance is observed to degrade consistently with increasing magnetic field. Inhomogeneity of the RF field is found to have a significant impact on T2' values, with differences of about 20 % observed between probes with different coil geometries. Increasing RF nutation rates dramatically improve robustness with respect to RF offset, but the performance of phase-modulated sequences degrades at the very high nutation rates achievable in microcoils as a result of RF transients. The insights gained provide better understanding of the factors limiting decoupling performance under different conditions, and the high values of T2' observed (which generally exceed previous literature values) provide reference points for experiments involving spin magnetisation refocussing, such as 2D correlation spectra and measuring small spin couplings.
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Affiliation(s)
- Ilya Frantsuzov
- Department of ChemistryDurham UniversitySouth RoadDurhamDH1 3LEUnited Kingdom
| | - Suresh K. Vasa
- Institute for Molecules and MaterialsRadboud UniversityHeyendaalseweg 1356525 EDNijmegenThe Netherlands
| | - Matthias Ernst
- Laboratory of Physical ChemistryETH ZürichVladimir-Prelog-Weg 28093ZürichSwitzerland
| | - Steven P. Brown
- Department of PhysicsUniversity of WarwickCoventryCV4 7ALUnited Kingdom
| | - Vadim Zorin
- Agilent Technologies (UK) Ltd.6 Mead RoadYarntonOxfordshireOX5 1QUUnited Kingdom
- Mestrelab ResearchS.L Feliciano Barrera 9B—Bajo15706Santiago de CompostelaSpain
| | - Arno P. M. Kentgens
- Institute for Molecules and MaterialsRadboud UniversityHeyendaalseweg 1356525 EDNijmegenThe Netherlands
| | - Paul Hodgkinson
- Department of ChemistryDurham UniversitySouth RoadDurhamDH1 3LEUnited Kingdom
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14
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Dekhil M, Mollica G, Bonniot TT, Ziarelli F, Thureau P, Viel S. Determining carbon-carbon connectivities in natural abundance organic powders using dipolar couplings. Chem Commun (Camb) 2016; 52:8565-8. [PMID: 27319808 DOI: 10.1039/c6cc04202c] [Citation(s) in RCA: 7] [Impact Index Per Article: 0.9] [Reference Citation Analysis] [Abstract] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Indexed: 11/21/2022]
Abstract
We present a solid-state NMR methodology capable of investigating the carbon skeleton of natural abundance organic powders. The methodology is based on the (13)C-(13)C dipolar coupling interaction and allows carbon-carbon connectivities to be unambiguously established for a wide range of organic solids. This methodology is particularly suitable for disordered solids, such as natural or synthetic macromolecules, which cannot be studied using conventional diffraction or NMR techniques.
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Affiliation(s)
- Myriam Dekhil
- Aix-Marseille Université, CNRS, ICR (UMR 7273), 13397 Marseille, France.
| | - Giulia Mollica
- Aix-Marseille Université, CNRS, ICR (UMR 7273), 13397 Marseille, France.
| | | | - Fabio Ziarelli
- Aix-Marseille Université, Centrale Marseille, CNRS, Fédération des Sciences Chimiques de Marseille (FR 1739), 13397 Marseille, France
| | - Pierre Thureau
- Aix-Marseille Université, CNRS, ICR (UMR 7273), 13397 Marseille, France.
| | - Stéphane Viel
- Aix-Marseille Université, CNRS, ICR (UMR 7273), 13397 Marseille, France. and Institut Universitaire de France, 75005 Paris, France
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15
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Ong T, Liao W, Mougel V, Gajan D, Lesage A, Emsley L, Copéret C. Atomistic Description of Reaction Intermediates for Supported Metathesis Catalysts Enabled by DNP SENS. Angew Chem Int Ed Engl 2016. [DOI: 10.1002/ange.201510821] [Citation(s) in RCA: 6] [Impact Index Per Article: 0.8] [Reference Citation Analysis] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Indexed: 11/09/2022]
Affiliation(s)
- Ta‐Chung Ong
- Department of Chemistry and Applied Biosciences ETH Zürich Vladimir-Prelog-Weg 1–5 8093 Zürich Switzerland
| | - Wei‐Chih Liao
- Department of Chemistry and Applied Biosciences ETH Zürich Vladimir-Prelog-Weg 1–5 8093 Zürich Switzerland
| | - Victor Mougel
- Department of Chemistry and Applied Biosciences ETH Zürich Vladimir-Prelog-Weg 1–5 8093 Zürich Switzerland
| | - David Gajan
- Centre de RMN à Très Hauts Champs Institut de Sciences Analytiques (CNRS/ENS Lyon/UCB Lyon 1) Université de Lyon 69100 Villeurbanne France
| | - Anne Lesage
- Centre de RMN à Très Hauts Champs Institut de Sciences Analytiques (CNRS/ENS Lyon/UCB Lyon 1) Université de Lyon 69100 Villeurbanne France
| | - Lyndon Emsley
- Institut des Sciences et Ingénierie Chimiques École Polytechnique Fédérale de Lausanne (EPFL) 1015 Lausanne Switzerland
| | - Christophe Copéret
- Department of Chemistry and Applied Biosciences ETH Zürich Vladimir-Prelog-Weg 1–5 8093 Zürich Switzerland
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16
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Ong TC, Liao WC, Mougel V, Gajan D, Lesage A, Emsley L, Copéret C. Atomistic Description of Reaction Intermediates for Supported Metathesis Catalysts Enabled by DNP SENS. Angew Chem Int Ed Engl 2016; 55:4743-7. [DOI: 10.1002/anie.201510821] [Citation(s) in RCA: 46] [Impact Index Per Article: 5.8] [Reference Citation Analysis] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Received: 11/23/2015] [Revised: 01/29/2016] [Indexed: 11/10/2022]
Affiliation(s)
- Ta-Chung Ong
- Department of Chemistry and Applied Biosciences; ETH Zürich; Vladimir-Prelog-Weg 1-5 8093 Zürich Switzerland
| | - Wei-Chih Liao
- Department of Chemistry and Applied Biosciences; ETH Zürich; Vladimir-Prelog-Weg 1-5 8093 Zürich Switzerland
| | - Victor Mougel
- Department of Chemistry and Applied Biosciences; ETH Zürich; Vladimir-Prelog-Weg 1-5 8093 Zürich Switzerland
| | - David Gajan
- Centre de RMN à Très Hauts Champs; Institut de Sciences Analytiques (CNRS/ENS Lyon/UCB Lyon 1); Université de Lyon; 69100 Villeurbanne France
| | - Anne Lesage
- Centre de RMN à Très Hauts Champs; Institut de Sciences Analytiques (CNRS/ENS Lyon/UCB Lyon 1); Université de Lyon; 69100 Villeurbanne France
| | - Lyndon Emsley
- Institut des Sciences et Ingénierie Chimiques; École Polytechnique Fédérale de Lausanne (EPFL); 1015 Lausanne Switzerland
| | - Christophe Copéret
- Department of Chemistry and Applied Biosciences; ETH Zürich; Vladimir-Prelog-Weg 1-5 8093 Zürich Switzerland
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17
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Wittmann JJ, Mertens V, Takeda K, Meier BH, Ernst M. Quantification and compensation of the influence of pulse transients on symmetry-based recoupling sequences. JOURNAL OF MAGNETIC RESONANCE (SAN DIEGO, CALIF. : 1997) 2016; 263:7-18. [PMID: 26766289 DOI: 10.1016/j.jmr.2015.12.011] [Citation(s) in RCA: 6] [Impact Index Per Article: 0.8] [Reference Citation Analysis] [Abstract] [Key Words] [Track Full Text] [Subscribe] [Scholar Register] [Received: 11/05/2015] [Revised: 12/08/2015] [Accepted: 12/16/2015] [Indexed: 06/05/2023]
Abstract
Deviations of amplitude and phase of radio-frequency pulses from the desired values, can have a severe impact on the performance of multiple-pulse sequences in NMR spectroscopy. A particular problem are pulse transients that appear every time there is a discontinuity in amplitude or phase. Based on a Floquet description using pulses with arbitrarily shaped amplitudes and phases we present a systematic study of the influence of pulse transients on symmetry-based pulse sequences in solid-state NMR under magic-angle spinning. This treatment explains the dependence of the experimentally observed transfer efficiency on the details of experimental setups. In addition, three approaches are compared which have the aim to re-establish highly efficient recoupling. We demonstrate that the application of transient-compensated pulses as basic elements of symmetry-based sequences leads to a significantly improved robustness of the experiments with respect to variations in the experimental setup.
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Affiliation(s)
- Johannes J Wittmann
- Physical Chemistry, ETH Zurich, Vladimir-Prelog-Weg 2, 8093 Zurich, Switzerland
| | - Valerie Mertens
- Physical Chemistry, ETH Zurich, Vladimir-Prelog-Weg 2, 8093 Zurich, Switzerland
| | - Kazuyuki Takeda
- Division of Chemistry, Graduate School of Science, Kyoto University, 606-8502 Kyoto, Japan
| | - Beat H Meier
- Physical Chemistry, ETH Zurich, Vladimir-Prelog-Weg 2, 8093 Zurich, Switzerland.
| | - Matthias Ernst
- Physical Chemistry, ETH Zurich, Vladimir-Prelog-Weg 2, 8093 Zurich, Switzerland.
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18
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Teymoori G, Pahari B, Edén M. Low-power broadband homonuclear dipolar recoupling in MAS NMR by two-fold symmetry pulse schemes for magnetization transfers and double-quantum excitation. JOURNAL OF MAGNETIC RESONANCE (SAN DIEGO, CALIF. : 1997) 2015; 261:205-20. [PMID: 26515279 DOI: 10.1016/j.jmr.2015.09.004] [Citation(s) in RCA: 15] [Impact Index Per Article: 1.7] [Reference Citation Analysis] [Abstract] [Key Words] [Track Full Text] [Subscribe] [Scholar Register] [Received: 07/06/2015] [Revised: 08/31/2015] [Accepted: 09/07/2015] [Indexed: 05/28/2023]
Abstract
We provide an experimental, numerical, and high-order average Hamiltonian evaluation of an open-ended series of homonuclear dipolar recoupling sequences, SR [Formula: see text] with p=1,2,3,…. While operating at a very low radio-frequency (rf) power, corresponding to a nutation frequency of 1/2 of the magic-angle spinning (MAS) rate (ωnut=ωr/2), these recursively generated double-quantum (2Q) dipolar recoupling schemes offer a progressively improved compensation to resonance offsets and rf inhomogeneity for increasing pulse-sequence order p. The excellent recoupling robustness to these experimental obstacles, as well as to CSA, is demonstrated for 2Q filtering (2QF) experiments and for driving magnetization transfers in 2D NMR correlation spectroscopy, where the sequences may provide either double or zero quantum dipolar Hamiltonians during mixing. Experimental and numerical demonstrations, which mostly target conditions of "ultra-fast" MAS (≳50kHz) and high magnetic fields, are provided for recoupling of (13)C across a wide range of isotropic and anisotropic chemical shifts, as well as dipolar coupling constants, encompassing [2,3-(13)C2]alanine, [1,3-(13)C2]alanine, diammonium [1,4-(13)C2]fumarate, and [U-(13)C]tyrosine. When compared at equal power levels, a superior performance is observed for the SR [Formula: see text] sequences with p⩾3 relative to existing and well-established 2Q recoupling techniques. At ultra-fast MAS, proton decoupling is redundant during the homonuclear dipolar recoupling of dilute spins in organic solids, which renders the family of SR [Formula: see text] schemes the first efficient 2Q recoupling option for general applications, such as 2Q-1Q correlation NMR and high-order multiple-quantum excitation, under truly low-power rf conditions.
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Affiliation(s)
- Gholamhasan Teymoori
- Physical Chemistry Division, Department of Materials and Environmental Chemistry, Arrhenius Laboratory, Stockholm University, SE-106 91 Stockholm, Sweden
| | - Bholanath Pahari
- Physical Chemistry Division, Department of Materials and Environmental Chemistry, Arrhenius Laboratory, Stockholm University, SE-106 91 Stockholm, Sweden
| | - Mattias Edén
- Physical Chemistry Division, Department of Materials and Environmental Chemistry, Arrhenius Laboratory, Stockholm University, SE-106 91 Stockholm, Sweden.
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19
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Wittmann JJ, Takeda K, Meier BH, Ernst M. Kompensation von Pulsimperfektionen in der Festkörper-NMR- Spektroskopie: ein Schlüssel zu verbesserter Reproduzierbarkeit und Effizienz. Angew Chem Int Ed Engl 2015. [DOI: 10.1002/ange.201504782] [Citation(s) in RCA: 5] [Impact Index Per Article: 0.6] [Reference Citation Analysis] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Indexed: 11/07/2022]
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20
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Wittmann JJ, Takeda K, Meier BH, Ernst M. Compensating Pulse Imperfections in Solid-State NMR Spectroscopy: A Key to Better Reproducibility and Performance. Angew Chem Int Ed Engl 2015; 54:12592-6. [DOI: 10.1002/anie.201504782] [Citation(s) in RCA: 21] [Impact Index Per Article: 2.3] [Reference Citation Analysis] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Received: 05/27/2015] [Revised: 07/03/2015] [Indexed: 11/11/2022]
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21
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Zehe CS, Siegel R, Senker J. Influence of proton coupling on symmetry-based homonuclear (19)F dipolar recoupling experiments. SOLID STATE NUCLEAR MAGNETIC RESONANCE 2015; 65:122-131. [PMID: 25572924 DOI: 10.1016/j.ssnmr.2014.12.002] [Citation(s) in RCA: 1] [Impact Index Per Article: 0.1] [Reference Citation Analysis] [Abstract] [Key Words] [Track Full Text] [Subscribe] [Scholar Register] [Received: 09/03/2014] [Revised: 12/03/2014] [Accepted: 12/05/2014] [Indexed: 06/04/2023]
Abstract
We study the efficiency of two symmetry based homonuclear (19)F double-quantum recoupling sequences for moderate (R142(6)) and ultra-fast (R144(5)) MAS under the influence of strong (1)H-(1)H and (1)H-(19)F dipolar interactions and (1)H continuous wave decoupling. Simulations based on various spin systems derived from the organic solid 1,3,5-tris(2-fluoro-2-methylpropionylamino)benzene (F-BTA), used as a model system, reveal that the strong-decoupling limit is not accessible even for moderate spinning speeds. Additionally, for the no-decoupling limit improved DQ efficiencies are predicted for both moderate and ultra-fast MAS. Strong perturbations of build-up curves can be avoided by additional stabilisation through supercycling. Additional (1)H cw decoupling during (19)F recoupling rapidly reduces the maximum DQ efficiency when deviating from the no-decoupling limit. These effects were confirmed by experimental data on F-BTA. For moderate spinning the influence of (1)H-(1)H and (1)H-(19)F couplings is markedly stronger compared to ultra-fast MAS. For the latter case those influences reduce to a constant scaling if only short excitation times up to the first minimum are taken into account. Based on this analysis the experimental build-up curves of 1,3,5-tris(2-fluoro-2-methylpropionylamino)benzene can be refined with homonuclear (19)F spin systems which allow to probe even subtle structural differences for the fluorine atoms of F-BTA.
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Affiliation(s)
- Christoph S Zehe
- Inorganic Chemistry III, University of Bayreuth, 95447 Bayreuth, Germany
| | - Renée Siegel
- Inorganic Chemistry III, University of Bayreuth, 95447 Bayreuth, Germany
| | - Jürgen Senker
- Inorganic Chemistry III, University of Bayreuth, 95447 Bayreuth, Germany.
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22
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Mao J, Do NN, Scholz F, Reggie L, Mehler M, Lakatos A, Ong YS, Ullrich SJ, Brown LJ, Brown RCD, Becker-Baldus J, Wachtveitl J, Glaubitz C. Structural basis of the green-blue color switching in proteorhodopsin as determined by NMR spectroscopy. J Am Chem Soc 2014; 136:17578-90. [PMID: 25415762 DOI: 10.1021/ja5097946] [Citation(s) in RCA: 44] [Impact Index Per Article: 4.4] [Reference Citation Analysis] [Abstract] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Indexed: 12/12/2022]
Abstract
Proteorhodopsins (PRs) found in marine microbes are the most abundant retinal-based photoreceptors on this planet. PR variants show high levels of environmental adaptation, as their colors are tuned to the optimal wavelength of available light. The two major green and blue subfamilies can be interconverted through a L/Q point mutation at position 105. Here we reveal the structural basis behind this intriguing color-tuning effect. High-field solid-state NMR spectroscopy was used to visualize structural changes within green PR directly within the lipid bilayer upon introduction of the green-blue L105Q mutation. The observed effects are localized within the binding pocket and close to retinal carbons C14 and C15. Subsequently, magic-angle spinning (MAS) NMR spectroscopy with sensitivity enhancement by dynamic nuclear polarization (DNP) was applied to determine precisely the retinal structure around C14-C15. Upon mutation, a significantly stretched C14-C15 bond, deshielding of C15, and a slight alteration of the retinal chain's out-of-plane twist was observed. The L105Q blue switch therefore acts locally on the retinal itself and induces a conjugation defect between the isomerization region and the imine linkage. Consequently, the S0-S1 energy gap increases, resulting in the observed blue shift. The distortion of the chromophore structure also offers an explanation for the elongated primary reaction detected by pump-probe spectroscopy, while chemical shift perturbations within the protein can be linked to the elongation of late-photocycle intermediates studied by flash photolysis. Besides resolving a long-standing problem, this study also demonstrates that the combination of data obtained from high-field and DNP-enhanced MAS NMR spectroscopy together with time-resolved optical spectroscopy enables powerful synergies for in-depth functional studies of membrane proteins.
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Affiliation(s)
- Jiafei Mao
- Institute of Biophysical Chemistry and Centre for Biomolecular Magnetic Resonance, Goethe University Frankfurt , 60438 Frankfurt am Main, Germany
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23
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Bechmann M, Clark J, Sebald A. Genetic algorithms and solid state NMR pulse sequences. JOURNAL OF MAGNETIC RESONANCE (SAN DIEGO, CALIF. : 1997) 2013; 228:66-75. [PMID: 23357428 DOI: 10.1016/j.jmr.2012.12.015] [Citation(s) in RCA: 6] [Impact Index Per Article: 0.5] [Reference Citation Analysis] [Abstract] [MESH Headings] [Track Full Text] [Subscribe] [Scholar Register] [Received: 11/01/2012] [Revised: 12/17/2012] [Accepted: 12/21/2012] [Indexed: 06/01/2023]
Abstract
The use of genetic algorithms for the optimisation of magic angle spinning NMR pulse sequences is discussed. The discussion uses as an example the optimisation of the C7(2)(1) dipolar recoupling pulse sequence, aiming to achieve improved efficiency for spin systems characterised by large chemical shielding anisotropies and/or small dipolar coupling interactions. The optimised pulse sequence is found to be robust over a wide range of parameters, requires only minimal a priori knowledge of the spin system for experimental implementations with buildup rates being solely determined by the magnitude of the dipolar coupling interaction, but is found to be less broadbanded than the original C7(2)(1) pulse sequence. The optimised pulse sequence breaks the synchronicity between r.f. pulses and sample spinning.
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24
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Lu X, Trébosc J, Lafon O, Amoureux JP. Measurement of the shortest hetero-nuclear distances in multiple-spin systems using constant-time correlation NMR methods. CrystEngComm 2013. [DOI: 10.1039/c3ce40557e] [Citation(s) in RCA: 4] [Impact Index Per Article: 0.4] [Reference Citation Analysis] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Indexed: 01/31/2023]
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25
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Low-power broadband homonuclear dipolar recoupling without decoupling: Double-quantum 13C NMR correlations at very fast magic-angle spinning. Chem Phys Lett 2012. [DOI: 10.1016/j.cplett.2012.07.053] [Citation(s) in RCA: 28] [Impact Index Per Article: 2.3] [Reference Citation Analysis] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Indexed: 11/23/2022]
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26
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Concistrè M, Johannessen OG, McLean N, Bovee-Geurts PHM, Brown RCD, Degrip WJ, Levitt MH. A large geometric distortion in the first photointermediate of rhodopsin, determined by double-quantum solid-state NMR. JOURNAL OF BIOMOLECULAR NMR 2012; 53:247-256. [PMID: 22639195 DOI: 10.1007/s10858-012-9635-4] [Citation(s) in RCA: 8] [Impact Index Per Article: 0.7] [Reference Citation Analysis] [Abstract] [MESH Headings] [Grants] [Track Full Text] [Subscribe] [Scholar Register] [Received: 02/28/2012] [Accepted: 05/01/2012] [Indexed: 06/01/2023]
Abstract
Double-quantum magic-angle-spinning NMR experiments were performed on 11,12-(13)C(2)-retinylidene-rhodopsin under illumination at low temperature, in order to characterize torsional angle changes at the C11-C12 photoisomerization site. The sample was illuminated in the NMR rotor at low temperature (~120 K) in order to trap the primary photointermediate, bathorhodopsin. The NMR data are consistent with a strong torsional twist of the HCCH moiety at the isomerization site. Although the HCCH torsional twist was determined to be at least 40°, it was not possible to quantify it more closely. The presence of a strong twist is in agreement with previous Raman observations. The energetic implications of this geometric distortion are discussed.
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Affiliation(s)
- Maria Concistrè
- School of Chemistry, University of Southampton, SO17 1BJ, Southampton, UK.
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27
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De Paëpe G. Dipolar Recoupling in Magic Angle Spinning Solid-State Nuclear Magnetic Resonance. Annu Rev Phys Chem 2012; 63:661-84. [DOI: 10.1146/annurev-physchem-032511-143726] [Citation(s) in RCA: 99] [Impact Index Per Article: 8.3] [Reference Citation Analysis] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Indexed: 11/09/2022]
Affiliation(s)
- Gaël De Paëpe
- Service de Chimie Inorganique et Biologique, UMR-E 3 CEA/UJF-Grenoble 1, Institut Nanosciences et Cryogénie, F-38054 Grenoble, France;
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28
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Weber J, Seemann M, Schmedt auf der Günne J. Pulse-transient adapted C-symmetry pulse sequences. SOLID STATE NUCLEAR MAGNETIC RESONANCE 2012; 43-44:42-50. [PMID: 22445515 DOI: 10.1016/j.ssnmr.2012.02.009] [Citation(s) in RCA: 11] [Impact Index Per Article: 0.9] [Reference Citation Analysis] [Abstract] [Track Full Text] [Subscribe] [Scholar Register] [Received: 01/03/2012] [Revised: 02/28/2012] [Accepted: 02/29/2012] [Indexed: 05/31/2023]
Abstract
In solid-state NMR, pulse sequences make often use of pulses which are short compared to the recovery time of the probe head. Especially, rotorsynchronized dipolar recoupling experiments under magic-angle-spinning conditions can profit from the use of very high pulse amplitudes which in turn will reduce the length of the individual pulses. In this contribution we show that C-symmetry based pulse sequences used for double-quantum filtering experiments can strongly be influenced by pulse transients. We analyze the origin of pulse transients and show that the quadrature component can be minimized by cable-length variation which causes a mutual cancellation of probe-external and internal contributions. We implement and test a model to investigate the influence of pulse-transients by numerically exact calculations of the spin-density matrix allowing for composite pulses consisting of slices which are short compared to the circuit recovery time-constant. Moreover we introduce a phase-tuned C-element, which can be applied to γ-encoded experiments from the C-symmetry class, to reconstitute an almost ideal performance of the sequence. We have validated the modified transient-adapted pulse sequences theoretically on the basis of numerically exact calculations of the spin-dynamics. While comparably easy to apply the scheme proved also robust in practical application to (15)N, (13)C and (31)P double-quantum filtered experiments and leads to a significantly increased conversion efficiency.
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Affiliation(s)
- Johannes Weber
- Ludwig-Maximilians-Universität, Department Chemie, Butenandtstr. 5-13 (Haus D), 81377 München, Germany
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29
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Solution- and solid-state NMR studies of GPCRs and their ligands. BIOCHIMICA ET BIOPHYSICA ACTA-BIOMEMBRANES 2011; 1808:1462-75. [DOI: 10.1016/j.bbamem.2010.10.003] [Citation(s) in RCA: 36] [Impact Index Per Article: 2.8] [Reference Citation Analysis] [Track Full Text] [Subscribe] [Scholar Register] [Received: 06/05/2010] [Revised: 10/02/2010] [Accepted: 10/05/2010] [Indexed: 12/29/2022]
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30
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Becker-Baldus J, Kemp TF, Past J, Reinhold A, Samoson A, Brown SP. Longer-range distances by spinning-angle-encoding solid-state NMR spectroscopy. Phys Chem Chem Phys 2011; 13:4514-8. [DOI: 10.1039/c0cp02364g] [Citation(s) in RCA: 15] [Impact Index Per Article: 1.2] [Reference Citation Analysis] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Indexed: 02/04/2023]
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31
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Caporini MA, Bajaj VS, Veshtort M, Fitzpatrick A, MacPhee CE, Vendruscolo M, Dobson CM, Griffin RG. Accurate determination of interstrand distances and alignment in amyloid fibrils by magic angle spinning NMR. J Phys Chem B 2010; 114:13555-61. [PMID: 20925357 PMCID: PMC2959142 DOI: 10.1021/jp106675h] [Citation(s) in RCA: 25] [Impact Index Per Article: 1.8] [Reference Citation Analysis] [Abstract] [Key Words] [MESH Headings] [Grants] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Indexed: 11/28/2022]
Abstract
Amyloid fibrils are structurally ordered aggregates of proteins whose formation is associated with many neurodegenerative and other diseases. For that reason, their high-resolution structures are of considerable interest and have been studied using a wide range of techniques, notably electron microscopy, X-ray diffraction, and magic angle spinning (MAS) NMR. Because of the excellent resolution in the spectra, MAS NMR is uniquely capable of delivering site-specific, atomic resolution information about all levels of amyloid structure: (1) the monomer, which packs into several (2) protofilaments that in turn associate to form a (3) fibril. Building upon our high-resolution structure of the monomer of an amyloid-forming peptide from transthyretin (TTR(105-115)), we introduce single 1-(13)C labeled amino acids at seven different sites in the peptide and measure intermolecular carbonyl-carbonyl distances with an accuracy of ~0.11 A. Our results conclusively establish a parallel, in register, topology for the packing of this peptide into a β-sheet and provide constraints essential for the determination of an atomic resolution structure of the fibril. Furthermore, the approach we employ, based on a combination of a double-quantum filtered variant of the DRAWS recoupling sequence and multispin numerical simulations in SPINEVOLUTION, is general and should be applicable to a wide range of systems.
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Affiliation(s)
- Marc A Caporini
- Francis Bitter Magnet Laboratory and Department of Chemistry, Massachusetts Institute of Technology, Cambridge, Massachusetts 02139, USA
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32
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Edén M. Two-dimensional MAS NMR correlation protocols involving double-quantum filtering of quadrupolar spin-pairs. JOURNAL OF MAGNETIC RESONANCE (SAN DIEGO, CALIF. : 1997) 2010; 204:99-110. [PMID: 20202872 DOI: 10.1016/j.jmr.2010.02.007] [Citation(s) in RCA: 9] [Impact Index Per Article: 0.6] [Reference Citation Analysis] [Abstract] [MESH Headings] [Track Full Text] [Subscribe] [Scholar Register] [Received: 11/22/2009] [Revised: 02/07/2010] [Accepted: 02/09/2010] [Indexed: 05/28/2023]
Abstract
Three two-dimensional (2D) NMR homonuclear correlation techniques invoking double-quantum (2Q) filtration of the central transitions of half-integer spins are evaluated numerically and experimentally. They correlate directly detected single-quantum (1Q) coherences in the t(2) domain with either of 1Q, two-spin 2Q or single-spin multiple-quantum coherence-evolutions in the indirect (t(1)) dimension. We employ experimental (23)Na and (27)Al NMR on sodium sulfite and the natural mineral sillimanite (SiAl(2)O(5)), in conjunction with simulated 2D spectra from pairs of dipolar-recoupled spins-3/2 and 5/2 at different external magnetic fields, to compare the correlation strategies from the viewpoints of 2D spectral resolution, signal sensitivity, implementational aspects and their relative merits for establishing internuclear proximities and quadrupolar tensor orientations.
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Affiliation(s)
- Mattias Edén
- Physical Chemistry Division, Department of Materials and Environmental Chemistry, Arrhenius Laboratory, Stockholm University, SE-106 91 Stockholm, Sweden.
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Dawadi PBS, Lugtenburg J. Synthesis and use of stable isotope enriched retinals in the field of vitamin A. Molecules 2010; 15:1825-72. [PMID: 20336016 PMCID: PMC6257204 DOI: 10.3390/molecules15031825] [Citation(s) in RCA: 10] [Impact Index Per Article: 0.7] [Reference Citation Analysis] [Abstract] [Key Words] [MESH Headings] [Track Full Text] [Download PDF] [Figures] [Journal Information] [Subscribe] [Scholar Register] [Received: 01/15/2010] [Revised: 02/18/2010] [Accepted: 03/02/2010] [Indexed: 01/05/2023] Open
Abstract
The role of vitamin A and its metabolites in the life processes starting with the historical background and its up to date information is discussed in the introduction. Also the role of 11Z-retinal in vision and retinoic acid in the biological processes is elucidated. The essential role of isotopically enriched systems in the progress of vision research, nutrition research etc. is discussed. In part B industrial commercial syntheses of vitamin A by the two leading companies Hoffmann-La Roche (now DSM) and BASF are discussed. The knowledge obtained via these pioneering syntheses has been essential for the further synthetic efforts in vitamin A field by other scientific groups. The rest of the paper is devoted to the synthetic efforts of the Leiden group that gives an access to the preparation of site directed high level isotope enrichment in retinals. First the synthesis of the retinals with deuterium incorporation in the conjugated side chain is reviewed. Then, 13C-labeled retinals are discussed. This is followed by the discussion of a convergent synthetic scheme that allows a rational access to prepare any isotopomer of retinals. The schemes that provide access to prepare any possible isotope enriched chemically modified systems are discussed. Finally, nor-retinals and bridged retinals that give access to a whole (as yet incomplete) library of possible isotopomers are reviewed.
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Affiliation(s)
- Prativa B S Dawadi
- Leiden Institute of Chemistry, Leiden University, P.O. Box 9502, 2300 RA, Leiden, The Netherlands.
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Wang Q, Hu B, Lafon O, Trébosc J, Deng F, Amoureux JP. Homonuclear dipolar recoupling under ultra-fast magic-angle spinning: probing 19F-19F proximities by solid-state NMR. JOURNAL OF MAGNETIC RESONANCE (SAN DIEGO, CALIF. : 1997) 2010; 203:113-128. [PMID: 20044288 DOI: 10.1016/j.jmr.2009.12.009] [Citation(s) in RCA: 15] [Impact Index Per Article: 1.1] [Reference Citation Analysis] [Abstract] [MESH Headings] [Track Full Text] [Subscribe] [Scholar Register] [Received: 11/05/2009] [Revised: 12/09/2009] [Accepted: 12/09/2009] [Indexed: 05/28/2023]
Abstract
We describe dipolar recoupling methods that accomplish, at high magic-angle spinning (MAS) frequencies, the excitation of double-quantum (DQ) coherences between spin-1/2 nuclei. We employ rotor-synchronized symmetry-based pulse sequences which are either gamma-encoded or non-gamma-encoded. The sensitivity and the robustness to both chemical-shift anisotropy and offset are examined. We also compare different techniques to avoid signal folding in the indirect dimension of two-dimensional double-quantum<-->single-quantum (DQ-SQ) spectra. This comprehensive analysis results in the identification of satisfactory conditions for dipolar (19)F-(19)F recoupling at high magnetic fields and high MAS frequencies. The utility of these recoupling methods is demonstrated with high-resolution DQ-SQ NMR spectra, which allow probing (19)F-(19)F proximities in powered fluoroaluminates.
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Affiliation(s)
- Qiang Wang
- UCCS, CNRS-8181, Lille-University, 59652, Villeneuve d'Ascq, France; State Key Laboratory of Magnetic Resonance and Atomic and Molecular Physics, Wuhan Center for Magnetic Resonance, WIPM, Chinese Academy of Sciences, Wuhan 430071, China; Graduate School of the Chinese Academy of Sciences, Beijing, China
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Hu B, Delevoye L, Lafon O, Trébosc J, Amoureux JP. Double-quantum NMR spectroscopy of 31P species submitted to very large CSAs. JOURNAL OF MAGNETIC RESONANCE (SAN DIEGO, CALIF. : 1997) 2009; 200:178-188. [PMID: 19616980 DOI: 10.1016/j.jmr.2009.06.020] [Citation(s) in RCA: 23] [Impact Index Per Article: 1.5] [Reference Citation Analysis] [Abstract] [MESH Headings] [Track Full Text] [Subscribe] [Scholar Register] [Received: 05/20/2009] [Revised: 06/24/2009] [Accepted: 06/24/2009] [Indexed: 05/28/2023]
Abstract
We introduce an original pulse sequence, BR2(2)(1)(taupitau), which is a block super-cycled R2(2)(1) sequence employing as basic element a pi pulse sandwiched by 'window' intervals. This homonuclear dipolar recoupling method allows the efficient excitation of double-quantum coherences between spin-1/2 nuclei submitted to very large chemical shift anisotropy. We demonstrate that this technique can be employed in double-quantum<-->single-quantum (31)P homonuclear correlation experiment at high magnetic field (B(0)>or=14 T) and high MAS frequencies (nu(R)>or=30 kHz). The performances of BR2(2)(1)(taupitau) are compared to those of the double-quantum recoupling methods, such as BABA and bracketed fp-RFDR, which were already employed at fast MAS rates. The BR2(2)(1)(taupitau) sequence displays a higher robustness to CSA and offset than the other existing techniques.
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Affiliation(s)
- B Hu
- UCCS, CNRS-8181, Lille-University, Villeneuve D'Ascq, France
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36
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Edén M, Lo AYH. Supercycled symmetry-based double-quantum dipolar recoupling of quadrupolar spins in MAS NMR: I. Theory. JOURNAL OF MAGNETIC RESONANCE (SAN DIEGO, CALIF. : 1997) 2009; 200:267-279. [PMID: 19648039 DOI: 10.1016/j.jmr.2009.07.007] [Citation(s) in RCA: 6] [Impact Index Per Article: 0.4] [Reference Citation Analysis] [Abstract] [MESH Headings] [Track Full Text] [Subscribe] [Scholar Register] [Received: 05/14/2009] [Revised: 07/04/2009] [Accepted: 07/08/2009] [Indexed: 05/28/2023]
Abstract
Using average Hamiltonian (AH) theory, we analyze recently introduced homonuclear dipolar recoupling pulse sequences for exciting central-transition double-quantum coherences (2QC) between half-integer spin quadrupolar nuclei undergoing magic-angle-spinning. Several previously observed differences among the recoupling schemes concerning their compensation to resonance offsets and radio-frequency (rf) inhomogeneity may qualitatively be rationalized by an AH analysis up to third perturbation order, despite its omission of first-order quadrupolar interactions. General aspects of the engineering of 2Q-recoupling pulse sequences applicable to half-integer spins are discussed, emphasizing the improvements offered from a diversity of supercycles providing enhanced suppression of undesirable AH cross-terms between resonance offsets and rf amplitude errors.
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Affiliation(s)
- Mattias Edén
- Physical Chemistry Division, Stockholm University, Stockholm, Sweden.
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Herbst C, Herbst J, Leppert J, Ohlenschläger O, Görlach M, Ramachandran R. Numerical design of RN(n)(nu) symmetry-based RF pulse schemes for recoupling and decoupling of nuclear spin interactions at high MAS frequencies. JOURNAL OF BIOMOLECULAR NMR 2009; 44:235-244. [PMID: 19557520 DOI: 10.1007/s10858-009-9335-x] [Citation(s) in RCA: 1] [Impact Index Per Article: 0.1] [Reference Citation Analysis] [Abstract] [MESH Headings] [Track Full Text] [Subscribe] [Scholar Register] [Received: 03/31/2009] [Accepted: 06/03/2009] [Indexed: 05/28/2023]
Abstract
An approach for the efficient implementation of RN(n)(nu) symmetry-based pulse schemes that are often employed for recoupling and decoupling of nuclear spin interactions in biological solid state NMR investigations is demonstrated at high magic-angle spinning frequencies. RF pulse sequences belonging to the RN(n)(nu) symmetry involve the repeated application of the pulse sandwich {R(phi)R(-phi)}, corresponding to a propagator U(RF) = exp(-i4phiI(z)), where phi = pinu/N and R is typically a pulse that rotates the nuclear spins through 180 degrees about the x-axis. In this study, broadband, phase-modulated 180 degrees pulses of constant amplitude were employed as the initial 'R' element and the phase-modulation profile of this 'R' element was numerically optimised for generating RN(n)(nu) symmetry-based pulse schemes with satisfactory magnetisation transfer characteristics. At representative MAS frequencies, RF pulse sequences were implemented for achieving 13C-13C double-quantum dipolar recoupling and through bond scalar coupling mediated chemical shift correlation and evaluated via numerical simulations and experimental measurements. The results from these investigations are presented here.
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Affiliation(s)
- Christian Herbst
- Research group Biomolecular NMR spectroscopy, Leibniz Institute for Age Research, Fritz Lipmann Institute, 07745 Jena, Germany
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Bradley JP, Tripon C, Filip C, Brown SP. Determining relative proton-proton proximities from the build-up of two-dimensional correlation peaks in 1H double-quantum MAS NMR: insight from multi-spin density-matrix simulations. Phys Chem Chem Phys 2009; 11:6941-52. [PMID: 19652828 DOI: 10.1039/b906400a] [Citation(s) in RCA: 55] [Impact Index Per Article: 3.7] [Reference Citation Analysis] [Abstract] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Indexed: 11/21/2022]
Abstract
The build-up of intensity-as a function of the number, n(rcpl), of POST-C7 elements used for the excitation and reconversion of double-quantum (DQ) coherence (DQC)-is analysed for the fifteen distinct DQ correlation peaks that are observed experimentally for the eight separate (1)H resonances in a (1)H (500 MHz) DQ CRAMPS solid-state (12.5 kHz MAS) NMR spectrum of the dipeptide beta-AspAla (S. P. Brown, A. Lesage, B. Elena, and L. Emsley, J. Am. Chem. Soc., 2004, 126, 13230). The simulation in SPINEVOLUTION (M. Veshtort and R. G. Griffin, J. Magn. Reson., 2006, 178, 248) of t(1) ((1)H DQ evolution) FIDs for clusters of eight dipolar-coupled protons gives separate simulated (1)H DQ build-up curves for the CH(2)(a), CH(2)(b), CH(Asp), CH(Ala), NH and OH (1)H single-quantum (SQ) (1)H resonances. An analysis of both the simulated and experimental (1)H DQ build-up leads to the following general observations: (i) considering the build-up of (1)H DQ peaks at a particular SQ frequency, maximum intensity is observed for the DQC corresponding to the shortest H-H distance; (ii) for the maximum intensity (1)H DQ peak at a particular SQ frequency, the recoupling time for the observed maximum intensity depends on the corresponding H-H distance, e.g., maximum intensity for the CH(2)(a)-CH(2)(b) (H-H distance = 1.55 A) and OH-CH(Asp) (H-H distance = 2.49 A) DQ peaks is observed at n(rcpl) = 2 and 3, respectively; (iii) for DQ peaks involving a CH(2) proton at a non-CH(2) SQ frequency, there is much reduced intensity and a maximum intensity at a short recoupling time; (iv) for the other lower intensity (1)H DQ peaks at a particular SQ frequency, maximum intensity is observed for the same (or close to the same) recoupling time, but the relative intensity of the DQ peaks is a reliable indicator of the relative H-H distance-the ratio of the maximum intensities for the peaks at the CH(Ala) SQ frequency due to the two DQCs with the NH and OH protons are found to be approximately in the ratio of the squares of the corresponding dipolar coupling constants. While the simulated (1)H DQ build-up curves reproduce most of the features of the experimental curves, maximum intensity is often observed at a longer recoupling time in simulations. In this respect, simulations for two to eight spins show a trend towards a faster decay for an increasing number of considered spins. Finally, simulations show that increasing either the Larmor frequency (to 1 GHz) or the MAS frequency (to 125 kHz) does not lead to changes in the marked differences between the (1)H DQ build-up curves at the CH(Asp) SQ frequency for DQCs to the CH(2)(a) and OH protons that correspond to similar H-H distances (2.39 A and 2.49 A, respectively).
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Bayro MJ, Huber M, Ramachandran R, Davenport TC, Meier BH, Ernst M, Griffin RG. Dipolar truncation in magic-angle spinning NMR recoupling experiments. J Chem Phys 2009; 130:114506. [PMID: 19317544 DOI: 10.1063/1.3089370] [Citation(s) in RCA: 138] [Impact Index Per Article: 9.2] [Reference Citation Analysis] [Abstract] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Indexed: 11/14/2022] Open
Abstract
Quantitative solid-state NMR distance measurements in strongly coupled spin systems are often complicated due to the simultaneous presence of multiple noncommuting spin interactions. In the case of zeroth-order homonuclear dipolar recoupling experiments, the recoupled dipolar interaction between distant spins is attenuated by the presence of stronger couplings to nearby spins, an effect known as dipolar truncation. In this article, we quantitatively investigate the effect of dipolar truncation on the polarization-transfer efficiency of various homonuclear recoupling experiments with analytical theory, numerical simulations, and experiments. In particular, using selectively (13)C-labeled tripeptides, we compare the extent of dipolar truncation in model three-spin systems encountered in protein samples produced with uniform and alternating labeling. Our observations indicate that while the extent of dipolar truncation decreases in the absence of directly bonded nuclei, two-bond dipolar couplings can generate significant dipolar truncation of small, long-range couplings. Therefore, while alternating labeling alleviates the effects of dipolar truncation, and thus facilitates the application of recoupling experiments to large spin systems, it does not represent a complete solution to this outstanding problem.
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Affiliation(s)
- Marvin J Bayro
- Department of Chemistry, Francis Bitter Magnet Laboratory, Massachusetts Institute of Technology, Cambridge, Massachusetts 02139, USA
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40
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Hu B, Wang Q, Lafon O, Trébosc J, Deng F, Amoureux JP. Robust and efficient spin-locked symmetry-based double-quantum homonuclear dipolar recoupling for probing (1)H-(1)H proximity in the solid-state. JOURNAL OF MAGNETIC RESONANCE (SAN DIEGO, CALIF. : 1997) 2009; 198:41-48. [PMID: 19185521 DOI: 10.1016/j.jmr.2009.01.002] [Citation(s) in RCA: 30] [Impact Index Per Article: 2.0] [Reference Citation Analysis] [Abstract] [MESH Headings] [Track Full Text] [Subscribe] [Scholar Register] [Received: 10/15/2008] [Revised: 12/19/2008] [Accepted: 01/08/2009] [Indexed: 05/27/2023]
Abstract
We report a novel symmetry-based method, using inversion elements bracketed by spin locks, for exciting double-quantum (DQ) coherences between spin-1/2 nuclei, such as protons. Compared to previous DQ-recoupling techniques, this new pulse sequence requires moderate rf field, even at ultra-fast MAS speeds. Furthermore, it is easy to implement and it displays higher robustness to both chemical shift anisotropy and to spreads in resonance frequencies. These advances greatly facilitate the observation of (1)H-(1)H proximities at high fields and high MAS frequencies.
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Affiliation(s)
- B Hu
- UCCS, CNRS-8181, Lille University, Fr-59652, Villeneuve d'Ascq Cedex, France
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41
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Brinkmann A, Kentgens APM, Anupõld T, Samoson A. Symmetry-based recoupling in double-rotation NMR spectroscopy. J Chem Phys 2009; 129:174507. [PMID: 19045358 DOI: 10.1063/1.3005395] [Citation(s) in RCA: 26] [Impact Index Per Article: 1.7] [Reference Citation Analysis] [Abstract] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Indexed: 11/14/2022] Open
Abstract
In this contribution, we extend the theory of symmetry-based pulse sequences of types CN(n) (nu) and RN(n) (nu) in magic-angle-spinning nuclear resonance spectroscopy [M. H. Levitt, in Encyclopedia of Nuclear Magnetic Resonance, edited by D. M. Grant and R. K. Harris (Wiley, Chichester, 2002), Vol. 9]. to the case of rotating the sample simultaneously around two different angles with respect to the external magnetic field (double-rotation). We consider the case of spin-1/2 nuclei in general and the case of half-integer quadrupolar nuclei that are subjected to weak radio frequency pulses operating selectively on the central-transition polarizations. The transformation properties of the homonuclear dipolar interactions and J-couplings under central-transition-selective spin rotations are presented. We show that the pulse sequence R2(2) (1)R2(2) (-1) originally developed for homonuclear dipolar recoupling of half-integer quadrupolar nuclei under magic-angle-spinning conditions [M. Eden, D. Zhou, and J. Yu, Chem. Phys. Lett. 431, 397 (2006)] may be used for the same purpose in the case of double rotation, if the radio frequency pulses are synchronized with the outer rotation of the sample. We apply this sequence, sandwiched by central-transition selective 90 degrees pulses, to excite double-quantum coherences in homonuclear spin systems consisting of (23)Na and (27)Al nuclei.
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Affiliation(s)
- Andreas Brinkmann
- Physical Chemistry/Solid State NMR, Institute for Molecules and Materials, Radboud University Nijmegen, P.O. Box 9010, 6500 GL Nijmegen, The Netherlands.
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Seyfarth L, Senker J. An NMR crystallographic approach for the determination of the hydrogen substructure of nitrogen bonded protons. Phys Chem Chem Phys 2009; 11:3522-31. [DOI: 10.1039/b819319c] [Citation(s) in RCA: 31] [Impact Index Per Article: 2.1] [Reference Citation Analysis] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Indexed: 11/21/2022]
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De Paëpe G, Lewandowski JR, Loquet A, Böckmann A, Griffin RG. Proton assisted recoupling and protein structure determination. J Chem Phys 2008; 129:245101. [PMID: 19123534 PMCID: PMC2755343 DOI: 10.1063/1.3036928] [Citation(s) in RCA: 155] [Impact Index Per Article: 9.7] [Reference Citation Analysis] [Abstract] [MESH Headings] [Grants] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Received: 08/12/2008] [Accepted: 11/03/2008] [Indexed: 11/14/2022] Open
Abstract
We introduce a homonuclear version of third spin assisted recoupling, a second-order mechanism that can be used for polarization transfer between (13)C or (15)N spins in magic angle spinning (MAS) NMR experiments, particularly at high spinning frequencies employed in contemporary high field MAS experiments. The resulting sequence, which we refer to as proton assisted recoupling (PAR), relies on a cross-term between (1)H-(13)C (or (1)H-(15)N) couplings to mediate zero quantum (13)C-(13)C (or (15)N-(15)N recoupling). In particular, using average Hamiltonian theory we derive an effective Hamiltonian for PAR and show that the transfer is mediated by trilinear terms of the form C(1) (+/-)C(2) (-/+)H(Z) for (13)C-(13)C recoupling experiments (or N(1) (+/-)N(2) (-/+)H(Z) for (15)N-(15)N). We use analytical and numerical simulations to explain the structure of the PAR optimization maps and to delineate the PAR matching conditions. We also detail the PAR polarization transfer dependence with respect to the local molecular geometry and explain the observed reduction in dipolar truncation. Finally, we demonstrate the utility of PAR in structural studies of proteins with (13)C-(13)C spectra of uniformly (13)C, (15)N labeled microcrystalline Crh, a 85 amino acid model protein that forms a domain swapped dimer (MW=2 x 10.4 kDa). The spectra, which were acquired at high MAS frequencies (omega(r)2pi>20 kHz) and magnetic fields (750-900 MHz (1)H frequencies) using moderate rf fields, exhibit numerous cross peaks corresponding to long (up to 6-7 A) (13)C-(13)C distances which are particularly useful in protein structure determination. Using results from PAR spectra we calculate the structure of the Crh protein.
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Affiliation(s)
- Gaël De Paëpe
- Department of Chemistry and Francis Bitter Magnet Laboratory, Massachusetts Institute of Technology, Cambridge, Massachusetts 02139, USA
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Lopez JJ, Kaiser C, Shastri S, Glaubitz C. Double quantum filtering homonuclear MAS NMR correlation spectra: a tool for membrane protein studies. JOURNAL OF BIOMOLECULAR NMR 2008; 41:97-104. [PMID: 18506579 DOI: 10.1007/s10858-008-9245-3] [Citation(s) in RCA: 4] [Impact Index Per Article: 0.3] [Reference Citation Analysis] [Abstract] [MESH Headings] [Track Full Text] [Subscribe] [Scholar Register] [Received: 02/21/2008] [Revised: 04/24/2008] [Accepted: 04/27/2008] [Indexed: 05/26/2023]
Abstract
13C homonuclear correlation spectra based on proton driven spin diffusion (PDSD) are becoming increasingly important for obtaining distance constraints from multiply labeled biomolecules by MAS NMR. One particular challenging situation arises when such constraints are to be obtained from spectra with a large natural abundance signal background which causes detrimental diagonal peak intensities. They obscure cross peaks, and furthermore impede the calculation of a buildup rates matrix which may be used to derive distance constraints, as carried out in "NMR crystallography". Here, we combine double quantum (DQ) filtering with 13C-13C dipolar assisted rotational resonance (DARR) experiments to yield correlation spectra free of natural abundance contributions. Two experimental schemes, using DQ filtering prior to evolution (DOPE), and after mixing (DOAM), have been evaluated. Diagonal peak intensities along the spectrum diagonal are removed completely, and crosspeaks close to the diagonal are easily identifiable. For DOAM spectra with negligible mixing times, it is possible to carry out 'assignment walks' which simplify peak identification substantially. The method is demonstrated on 13C-cys labeled proteorhodopsin, a 27 kDa membrane protein. The magnetization transfer characteristics were studied using buildup curves obtained on uniformly 13C labelled crystalline tripeptide MLF. Our data show that DQ filtered DARR experiments pave the way for obtaining through space constraints for structural studies on ligands, bound to membrane receptors, or on small fragments within large proteins.
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Affiliation(s)
- Jakob J Lopez
- Institute for Biophysical Chemistry, Centre for Biomolecular Magnetic Resonance, J. W. Goethe University Frankfurt, Max-von-Laue-Str. 9, 60438, Frankfurt, Germany
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Zorin VE, Ernst M, Brown SP, Hodgkinson P. Insights into homonuclear decoupling from efficient numerical simulation: techniques and examples. JOURNAL OF MAGNETIC RESONANCE (SAN DIEGO, CALIF. : 1997) 2008; 192:183-196. [PMID: 18321741 DOI: 10.1016/j.jmr.2008.02.012] [Citation(s) in RCA: 12] [Impact Index Per Article: 0.8] [Reference Citation Analysis] [Abstract] [MESH Headings] [Track Full Text] [Subscribe] [Scholar Register] [Received: 11/07/2007] [Revised: 02/12/2008] [Accepted: 02/13/2008] [Indexed: 05/26/2023]
Abstract
A combination of techniques, including rational number synchronisation and pre-diagonalisation of the time-dependent periodic Hamiltonian, are described which allow the efficient simulation of NMR experiments involving both magic-angle spinning (MAS) and RF irradiation, particularly in the important special case of phase-modulated decoupling sequences. Chebyshev and conventional diagonalisation approaches to calculating propagators under MAS are also compared, with Chebyshev methods offering significant advantages in cases where the Hamiltonian is large and time-dependent but not block-diagonal (as is the case for problems involving combined MAS and RF). The ability to simulate extended coupled spin systems efficiently allows 1H spectra under homonuclear decoupling to be calculated directly and compared to experimental results. Reasonable agreement is found for the conditions under which homonuclear decoupling is typically applied for rigid solids (although the increasing deviation of experimental results from the predictions of theory and simulation at higher RF powers is still unexplained). Numerical simulations are used to explore three features of these experiments: the interaction between the magic-angle spinning and RF decoupling, the effects of tilt pulses in acquisition windows and the effects of "phase propagation delays" on tilted axis precession. In each case, the results reveal features that are not readily anticipated by previous analytical studies and shed light on previous empirical observations.
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Affiliation(s)
- Vadim E Zorin
- Department of Chemistry, Durham University, South Road, Durham DH1 3LE, UK
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Hu B, Trébosc J, Amoureux JP. Comparison of several hetero-nuclear dipolar recoupling NMR methods to be used in MAS HMQC/HSQC. JOURNAL OF MAGNETIC RESONANCE (SAN DIEGO, CALIF. : 1997) 2008; 192:112-122. [PMID: 18299242 DOI: 10.1016/j.jmr.2008.02.004] [Citation(s) in RCA: 36] [Impact Index Per Article: 2.3] [Reference Citation Analysis] [Abstract] [MESH Headings] [Track Full Text] [Subscribe] [Scholar Register] [Received: 11/22/2007] [Revised: 02/05/2008] [Accepted: 02/07/2008] [Indexed: 05/26/2023]
Abstract
We compare several hetero-nuclear dipolar recoupling sequences available for HMQC or HSQC experiments applied to spin-1/2 and quadrupolar nuclei. These sequences, which are applied to a single channel, are based either on the rotary resonance recoupling (R3) irradiation, or on two continuous rotor-synchronized modulations (SFAM1 and SFAM2), or on four symmetry-based sequences (R2(1)1,SR4(1)2,R12(3)5,R20(5)9), or on the REDOR scheme. We analyze systems exhibiting purely hetero-nuclear dipolar interactions as well as systems where homo-nuclear dipolar interactions need to be canceled. A special attention is given to the behavior of these sequences at very fast MAS. It is shown that R3 methods behave poorly due to the narrowness of their rf-matching curves, and that the best methods are SR4(1)2 and SFAM (SFAM1 or SFAM2 if homo-nuclear interactions are not negligible). REDOR can also recouple efficiently hetero-nuclear dipolar interactions, provided the sequence is sent on the non-observed channel and homo-nuclear dipolar interactions are negligible. We anticipate that at ultra-fast spinning speed, SFAM1 and SFAM2 will be the most efficient methods.
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Affiliation(s)
- B Hu
- UCCS, CNRS-8181, Lille University, Fr-59652 Villeneuve d'Ascq Cedex, France
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47
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De Paëpe G, Lewandowski JR, Griffin RG. Spin dynamics in the modulation frame: Application to homonuclear recoupling in magic angle spinning solid-state NMR. J Chem Phys 2008; 128:124503. [DOI: 10.1063/1.2834732] [Citation(s) in RCA: 47] [Impact Index Per Article: 2.9] [Reference Citation Analysis] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Indexed: 11/14/2022] Open
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48
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Lehner I, Basting D, Meyer B, Haase W, Manolikas T, Kaiser C, Karas M, Glaubitz C. The Key Residue for Substrate Transport (Glu14) in the EmrE Dimer Is Asymmetric. J Biol Chem 2008; 283:3281-3288. [DOI: 10.1074/jbc.m707899200] [Citation(s) in RCA: 49] [Impact Index Per Article: 3.1] [Reference Citation Analysis] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Indexed: 11/06/2022] Open
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49
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Pileio G, Concistrè M, McLean N, Gansmüller A, Brown RCD, Levitt MH. Analytical theory of gamma-encoded double-quantum recoupling sequences in solid-state nuclear magnetic resonance. JOURNAL OF MAGNETIC RESONANCE (SAN DIEGO, CALIF. : 1997) 2007; 186:65-74. [PMID: 17303455 DOI: 10.1016/j.jmr.2007.01.009] [Citation(s) in RCA: 10] [Impact Index Per Article: 0.6] [Reference Citation Analysis] [Abstract] [MESH Headings] [Track Full Text] [Subscribe] [Scholar Register] [Received: 11/08/2006] [Revised: 01/09/2007] [Accepted: 01/10/2007] [Indexed: 05/14/2023]
Abstract
Many important double-quantum recoupling techniques in solid-state NMR are classified as being gamma-encoded. This means that the phase of the double-quantum effective Hamiltonian, but not its amplitude, depends on the third Euler angle defining the orientation of the molecular spin system in the frame of the magic-angle-spinning rotor. In this paper, we provide closed analytical solutions for the dependence of the powder-average double-quantum-filtered signal on the recoupling times, within the average Hamiltonian approximation for gamma-encoded pulse sequences. The validity of the analytical solutions is tested by numerical simulations. The internuclear distance in a (13)C(2)-labelled retinal is estimated by fitting the analytical curves to experimental double-quantum data.
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50
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Brouwer DH, Alavi S, Ripmeester JA. A double quantum (129)Xe NMR experiment for probing xenon in multiply-occupied cavities of solid-state inclusion compounds. Phys Chem Chem Phys 2007; 9:1093-8. [PMID: 17311152 DOI: 10.1039/b616434j] [Citation(s) in RCA: 10] [Impact Index Per Article: 0.6] [Reference Citation Analysis] [Abstract] [MESH Headings] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Indexed: 11/21/2022]
Abstract
A method is presented for detecting multiple xenon atoms in cavities of solid-state inclusion compounds using (129)Xe double quantum NMR spectroscopy. Double quantum filtered (129)Xe NMR spectra, performed on the xenon clathrate of Dianin's compound were obtained under high-resolution Magic-Angle Spinning (MAS) conditions, by recoupling the weak (129)Xe-(129)Xe dipole-dipole couplings that exist between xenon atoms in close spatial proximity. Because the (129)Xe-(129)Xe dipole-dipole couplings are generally weak due to dynamics of the atoms and to large internuclear separations, and since the (129)Xe Chemical Shift Anisotropy (CSA) tends to be relatively large, a very robust dipolar recoupling sequence was necessary, with the symmetry-based SR26 dipolar recoupling sequence proving appropriate. We have also attempted to measure the (129)Xe-(129)Xe dipole-dipole coupling constant between xenon atoms in the cavities of the xenon-Dianin's compound clathrate and have found that the dynamics of the xenon atoms (as investigated with molecular dynamics simulations) as well as (129)Xe multiple spin effects complicate the analysis. The double quantum NMR method is useful for peak assignment in (129)Xe NMR spectra because peaks arising from different types of absorption/inclusion sites or from different levels of occupancy of single sites can be distinguished. The method can also help resolve ambiguities in diffraction experiments concerning the order/disorder in a material.
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Affiliation(s)
- Darren H Brouwer
- Steacie Institute for Molecular Sciences, National Research Council, 100 Sussex Drive, Ottawa ON, Canada K1A 0R6.
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