1
|
Mandal S, Daniel C. Ultrafast Excited-State Nonadiabatic Dynamics in Pt(II) Donor-Bridge-Acceptor Assemblies: A Quantum Approach for Optical Control. J Phys Chem A 2024; 128:3126-3136. [PMID: 38619836 DOI: 10.1021/acs.jpca.4c00646] [Citation(s) in RCA: 0] [Impact Index Per Article: 0] [Reference Citation Analysis] [Abstract] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Indexed: 04/16/2024]
Abstract
The ultrafast nonadiabatic excited state dynamics of (PTZ-N-benzyl-acetylide) (trans-bis-trimethylphosphine) Pt(II) (acetylide-NDI-bis-methyl) 1, representative of a series of Pt(II) donor-bridge-acceptor assemblies experimentally studied by the Weinstein group, University of Sheffield, is investigated by means of wavepacket propagations based on the multiconfiguration time-dependent Hartree (MCTDH) method. On the basis of electronic structure data obtained at the time-dependent density functional theory (TD-DFT) level, the subpicosecond decay is simulated by solving an 11 electronic states multimode problem, up to 18 vibrational normal modes, including both spin-orbit coupling (SOC) and vibronic coupling. A careful analysis of the results, within the diabatic representation, provides the key features of the spin-vibronic mechanism at work in this complex, distinguishing between the spin-orbit and vibronically activated ultrafast processes within the excited states manifold. The knowledge of the key active normal modes that promote selectively the population of specific electronic excited states opens a route toward optical control by selectively exciting these modes in order to drive the associated nonadiabatic processes. Relevant simulations, over 2 ps, are proposed to assess the impact of these selective vibrational excitations on the branching ratio between the primary photoproducts, namely, bridge-acceptor charge-transfer (CT) and donor-acceptor charge-separated (CS) electronic states. Whereas the excitation of the localized acetylide bridge C≡C bond stretching does not modify drastically the population of the low-lying electronic states within the first two ps, vibrational excitation of the out-of-plane twisting motion of the N-benzyl group linked to the donor entity favors the population of the 1,3CS states at the expense of the lowest 1,3CT states. This quantum study opens the route to IR optical control experiments based on the specific alteration of vibrational normal modes that activate vibronic couplings between key electronic excited states. However, the presence of critical crossings along the PES channels associated with these normal modes and the role of concurrent SOC driven ultrafast transfers of population should not be underestimated.
Collapse
Affiliation(s)
- Souvik Mandal
- Laboratoire de Chimie Quantique, Institut de Chimie Strasbourg, UMR-7177 CNRS, Université de Strasbourg, 1 Rue Blaise Pascal BP 296/R8, F-67008 Strasbourg, France
| | - Chantal Daniel
- Laboratoire de Chimie Quantique, Institut de Chimie Strasbourg, UMR-7177 CNRS, Université de Strasbourg, 1 Rue Blaise Pascal BP 296/R8, F-67008 Strasbourg, France
| |
Collapse
|
2
|
Roger C, Schmiedel A, Holzapfel M, Lukzen NN, Steiner UE, Lambert C. The influence of hindered rotation on electron transfer and exchange interaction in triarylamine-triptycene-perylene diimide triads. Phys Chem Chem Phys 2024; 26:4954-4967. [PMID: 38277181 DOI: 10.1039/d3cp05785b] [Citation(s) in RCA: 0] [Impact Index Per Article: 0] [Reference Citation Analysis] [Abstract] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Indexed: 01/27/2024]
Abstract
Stretched electron-donor-bridge-acceptor triads that exhibit intramolecular twisting degrees of freedom are capable of modulating exchange interaction (J) as well as electronic couplings through variable π-overlap at the linear bond links, affecting the rate constants of photoinduced charge separation and recombination. Here we present an in-depth investigation of such effects induced by methyl substituents leading to controlled steric hindrance of intramolecular twisting around biaryl axes. Starting from the parent structure, consisting of a triphenyl amine donor, a triptycene (TTC) bridge and a phenylene-perylene diimide acceptor (Me0), one of the two phenylene linkers attached to the TTC was ortho-substituted by two methyl groups (Me2, Me3), or both such phenylene linkers by two pairs of methyl groups (Me23). Photoinduced charge separation (kCS) leading to a charge-separated (CS) state was studied by fs-laser spectroscopy, charge recombination to either singlet ground state (kS) or to the first excited local triplet state of the acceptor (kT) by ns-laser spectroscopy, whereby kinetic magnetic field effects in an external magnetic field were recorded and analysed using quantum dynamic simulations of the spin dependent kinetics of the CS state. Kinetic spectra of the initial first order rate constants of charge recombination (k(B)) exhibited characteristic J-resonances progressing to lower fields in the series Me0, Me2, Me3, Me23. From the quantum simulations, the values of the parameters J, kS, kT and kSTD, the singlet/triplet dephasing constant, were obtained. They were analysed in terms of molecular dynamics simulations of the intramolecular twisting dynamics based on potentials calculated by density functional theory. Apart from kT, all of the parameters exhibit a clear correlation with the averaged cosine square products of the biaryl angles.
Collapse
Affiliation(s)
- Chantal Roger
- Institut für Organische Chemie, Universität Würzburg, Am Hubland, D-97074 Würzburg, Germany.
| | - Alexander Schmiedel
- Institut für Organische Chemie, Universität Würzburg, Am Hubland, D-97074 Würzburg, Germany.
| | - Marco Holzapfel
- Institut für Organische Chemie, Universität Würzburg, Am Hubland, D-97074 Würzburg, Germany.
| | - Nikita N Lukzen
- International Tomography Center, Russia and Novosibirsk State University, Institutskaya 3a, Novosibirsk, Novosibirsk 630090, Russia
| | - Ulrich E Steiner
- Department of Chemistry, University of Konstanz, Universitätsstraße 10, 78464 Konstanz, Germany.
| | - Christoph Lambert
- Institut für Organische Chemie, Universität Würzburg, Am Hubland, D-97074 Würzburg, Germany.
- Center for Nanosystems Chemistry, Universität Würzburg, Theodor-Boveri-Weg, D-97074 Würzburg, Germany
| |
Collapse
|
3
|
Maqboul I. Profiling charge transport: A new computational approach. Int J Biol Macromol 2023; 237:124065. [PMID: 36948333 DOI: 10.1016/j.ijbiomac.2023.124065] [Citation(s) in RCA: 0] [Impact Index Per Article: 0] [Reference Citation Analysis] [Abstract] [Key Words] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Received: 01/15/2023] [Revised: 03/12/2023] [Accepted: 03/13/2023] [Indexed: 03/24/2023]
Abstract
To maintain life, charge transfer processes must be efficient to allow electrons to migrate across distances as large as 30-50 Å within a timescale from picoseconds to milliseconds, and the free-energy cost should not exceed one electron volt. By employing local ionization and local affinity energies, we calculated the pathway for electron and electron-hole transport, respectively. The pathway is then used to calculate both the driving force and the activation energy. The electronic coupling is calculated using configuration interaction procedure. When the charge acceptor is not known, as in oxidative stress, the charge transport terminals are found using Monte-Carlo simulation. These parameters were used to calculate the rate described by Marcus theory. Our approach has been elaborately explained using the famous androstane example and then applied to two proteins: electron transport in azurin protein and hole-hopping migration route from the heme center of cytochrome c peroxidase to its surface. This model gives an effective method to calculate the charge transport pathway and the free-energy profile within 0.1 eV from the experimental measurements and electronic coupling within 3 meV.
Collapse
Affiliation(s)
- Ibrahim Maqboul
- Computer Chemistry Center (CCC), Department of Chemistry and Pharmacy, Faculty of Sciences, Friedrich-Alexander-University, Erlangen, Germany; Computer Chemistry Center (CCC), Department of Chemistry and Pharmacy, Faculty of Sciences, Friedrich-Alexander-University, Nägelsbachstraße 25, 91052 Erlangen, Germany..
| |
Collapse
|
4
|
Photosynthetic reaction center variants made via genetic code expansion show Tyr at M210 tunes the initial electron transfer mechanism. Proc Natl Acad Sci U S A 2021; 118:2116439118. [PMID: 34907018 DOI: 10.1073/pnas.2116439118] [Citation(s) in RCA: 4] [Impact Index Per Article: 1.3] [Reference Citation Analysis] [Abstract] [Key Words] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Accepted: 11/02/2021] [Indexed: 11/18/2022] Open
Abstract
Photosynthetic reaction centers (RCs) from Rhodobacter sphaeroides were engineered to vary the electronic properties of a key tyrosine (M210) close to an essential electron transfer component via its replacement with site-specific, genetically encoded noncanonical amino acid tyrosine analogs. High fidelity of noncanonical amino acid incorporation was verified with mass spectrometry and X-ray crystallography and demonstrated that RC variants exhibit no significant structural alterations relative to wild type (WT). Ultrafast transient absorption spectroscopy indicates the excited primary electron donor, P*, decays via a ∼4-ps and a ∼20-ps population to produce the charge-separated state P+HA - in all variants. Global analysis indicates that in the ∼4-ps population, P+HA - forms through a two-step process, P*→ P+BA -→ P+HA -, while in the ∼20-ps population, it forms via a one-step P* → P+HA - superexchange mechanism. The percentage of the P* population that decays via the superexchange route varies from ∼25 to ∼45% among variants, while in WT, this percentage is ∼15%. Increases in the P* population that decays via superexchange correlate with increases in the free energy of the P+BA - intermediate caused by a given M210 tyrosine analog. This was experimentally estimated through resonance Stark spectroscopy, redox titrations, and near-infrared absorption measurements. As the most energetically perturbative variant, 3-nitrotyrosine at M210 creates an ∼110-meV increase in the free energy of P+BA - along with a dramatic diminution of the 1,030-nm transient absorption band indicative of P+BA - formation. Collectively, this work indicates the tyrosine at M210 tunes the mechanism of primary electron transfer in the RC.
Collapse
|
5
|
Madrid-Úsuga D, Reina JH. Molecular Structure, Quantum Coherence, and Solvent Effects on the Ultrafast Electron Transport in BODIPY- C60 Derivatives. J Phys Chem A 2021; 125:2518-2531. [PMID: 33754739 DOI: 10.1021/acs.jpca.1c00603] [Citation(s) in RCA: 0] [Impact Index Per Article: 0] [Reference Citation Analysis] [Abstract] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Indexed: 11/28/2022]
Abstract
Photoinduced electron transfer in multichromophore molecular systems is defined by a critical interplay between their core unit configuration (donor, molecular bridge, and acceptor) and their system-solvent coupling; these lead to energy and charge transport processes that are key in the design of molecular antennas for efficient light harvesting and organic photovoltaics. Here, we quantify the ultrafast non-Markovian dissipative dynamics of electron transfer in D-π-A molecular photosystems comprising 1,3,5,7-tetramethyl-8-phenyl-4,4-difluoroboradiazaindacene (BODIPY), Zn-porphyrin, fulleropyrrolidine, and fulleroisoxazoline. We find that the stabilization energy of the charge transfer states exhibits a significant variation for different polar (methanol, tetrahydrofuran (THF)) and nonpolar (toluene) environments and determine such sensitivity according to the molecular structure and the electron-vibration couplings that arise at room temperature. For the considered donor-acceptor (D-A) dyads, we show that the stronger the molecule-solvent coupling, the larger the electron transfer rates, regardless of the dyads' electronic coherence properties. We find such coupling strengths to be the largest (lowest) for methanol (toluene), with an electron transfer rate difference of 2 orders of magnitude between the polar and nonpolar solvents. For the considered donor-bridge-acceptor (D-B-A) triads, the molecular bridge introduces an intermediate state that allows the realization of Λ or cascaded-type energy mechanisms. We show that the latter configuration, obtained for BDP-ZnP-[PyrC60] in methanol, exhibits the highest transfer rate of all of the computed triads. Remarkably, and in contrast with the dyads, we show that the larger charge transfer rates are obtained for triads that exhibit prolonged electron coherence and population oscillations.
Collapse
Affiliation(s)
- Duvalier Madrid-Úsuga
- Centre for Bioinformatics and Photonics-CIBioFi, Universidad del Valle, Calle 13 No. 100-00, Edificio E20 No. 1069, 760032 Cali, Colombia.,Departamento de Física, Universidad del Valle, 760032 Cali, Colombia
| | - John H Reina
- Centre for Bioinformatics and Photonics-CIBioFi, Universidad del Valle, Calle 13 No. 100-00, Edificio E20 No. 1069, 760032 Cali, Colombia.,Departamento de Física, Universidad del Valle, 760032 Cali, Colombia
| |
Collapse
|
6
|
Han Y, Maglione MS, Diez Cabanes V, Casado-Montenegro J, Yu X, Karuppannan SK, Zhang Z, Crivillers N, Mas-Torrent M, Rovira C, Cornil J, Veciana J, Nijhuis CA. Reversal of the Direction of Rectification Induced by Fermi Level Pinning at Molecule-Electrode Interfaces in Redox-Active Tunneling Junctions. ACS APPLIED MATERIALS & INTERFACES 2020; 12:55044-55055. [PMID: 33237732 DOI: 10.1021/acsami.0c15435] [Citation(s) in RCA: 6] [Impact Index Per Article: 1.5] [Reference Citation Analysis] [Abstract] [Key Words] [Track Full Text] [Subscribe] [Scholar Register] [Indexed: 05/24/2023]
Abstract
Control over the energy level alignment in molecular junctions is notoriously difficult, making it challenging to control basic electronic functions such as the direction of rectification. Therefore, alternative approaches to control electronic functions in molecular junctions are needed. This paper describes switching of the direction of rectification by changing the bottom electrode material M = Ag, Au, or Pt in M-S(CH2)11S-BTTF//EGaIn junctions based on self-assembled monolayers incorporating benzotetrathiafulvalene (BTTF) with EGaIn (eutectic alloy of Ga and In) as the top electrode. The stability of the junctions is determined by the choice of the bottom electrode, which, in turn, determines the maximum applied bias window, and the mechanism of rectification is dominated by the energy levels centered on the BTTF units. The energy level alignments of the three junctions are similar because of Fermi level pinning induced by charge transfer at the metal-thiolate interface and by a varying degree of additional charge transfer between BTTF and the metal. Density functional theory calculations show that the amount of electron transfer from M to the lowest unoccupied molecular orbital (LUMO) of BTTF follows the order Ag > Au > Pt. Junctions with Ag electrodes are the least stable and can only withstand an applied bias of ±1.0 V. As a result, no molecular orbitals can fall in the applied bias window, and the junctions do not rectify. The junction stability increases for M = Au, and the highest occupied molecular orbital (HOMO) dominates charge transport at a positive bias resulting in a positive rectification ratio of 83 at ±1.5 V. The junctions are very stable for M = Pt, but now the LUMO dominates charge transport at a negative bias resulting in a negative rectification ratio of 912 at ±2.5 V. Thus, the limitations of Fermi level pinning can be bypassed by a judicious choice of the bottom electrode material, making it possible to access selectively HOMO- or LUMO-based charge transport and, as shown here, associated reversal of rectification.
Collapse
Affiliation(s)
- Yingmei Han
- Department of Chemistry, National University of Singapore, 3 Science Drive 3, Singapore 117543, Singapore
| | - Maria Serena Maglione
- Institut de Ciéncia de Materials de Barcelona (ICMAB-CSIC)/CIBER-BBN, Campus de la UAB, Bellaterra 08193, Spain
| | - Valentin Diez Cabanes
- Laboratory for Chemistry of Novel Materials, University of Mons, Place du Parc 20, Mons 7000, Belgium
| | - Javier Casado-Montenegro
- Institut de Ciéncia de Materials de Barcelona (ICMAB-CSIC)/CIBER-BBN, Campus de la UAB, Bellaterra 08193, Spain
| | - Xiaojiang Yu
- Singapore Synchrotron Light Source, National University of Singapore, 5 Research Link, Singapore 117603, Singapore
| | - Senthil Kumar Karuppannan
- Department of Chemistry, National University of Singapore, 3 Science Drive 3, Singapore 117543, Singapore
| | - Ziyu Zhang
- Department of Chemistry, National University of Singapore, 3 Science Drive 3, Singapore 117543, Singapore
| | - Núria Crivillers
- Institut de Ciéncia de Materials de Barcelona (ICMAB-CSIC)/CIBER-BBN, Campus de la UAB, Bellaterra 08193, Spain
| | - Marta Mas-Torrent
- Institut de Ciéncia de Materials de Barcelona (ICMAB-CSIC)/CIBER-BBN, Campus de la UAB, Bellaterra 08193, Spain
| | - Concepció Rovira
- Institut de Ciéncia de Materials de Barcelona (ICMAB-CSIC)/CIBER-BBN, Campus de la UAB, Bellaterra 08193, Spain
| | - Jérôme Cornil
- Laboratory for Chemistry of Novel Materials, University of Mons, Place du Parc 20, Mons 7000, Belgium
| | - Jaume Veciana
- Institut de Ciéncia de Materials de Barcelona (ICMAB-CSIC)/CIBER-BBN, Campus de la UAB, Bellaterra 08193, Spain
| | - Christian A Nijhuis
- Department of Chemistry, National University of Singapore, 3 Science Drive 3, Singapore 117543, Singapore
- Centre for Advanced 2D Materials and Graphene Research Center, National University of Singapore, 6 Science Drive 2, Singapore 117546, Singapore
| |
Collapse
|
7
|
Acharyya N, Ovcharenko R, Fingerhut BP. On the role of non-diagonal system-environment interactions in bridge-mediated electron transfer. J Chem Phys 2020; 153:185101. [PMID: 33187441 DOI: 10.1063/5.0027976] [Citation(s) in RCA: 3] [Impact Index Per Article: 0.8] [Reference Citation Analysis] [Abstract] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Indexed: 11/14/2022] Open
Abstract
Bridge-mediated electron transfer (ET) between a donor and an acceptor is prototypical for the description of numerous most important ET scenarios. While multi-step ET and the interplay of sequential and direct superexchange transfer pathways in the donor-bridge-acceptor (D-B-A) model are increasingly understood, the influence of off-diagonal system-bath interactions on the transfer dynamics is less explored. Off-diagonal interactions account for the dependence of the ET coupling elements on nuclear coordinates (non-Condon effects) and are typically neglected. Here, we numerically investigate with quasi-adiabatic propagator path integral simulations the impact of off-diagonal system-environment interactions on the transfer dynamics for a wide range of scenarios in the D-B-A model. We demonstrate that off-diagonal system-environment interactions can have profound impact on the bridge-mediated ET dynamics. In the considered scenarios, the dynamics itself does not allow for a rigorous assignment of the underlying transfer mechanism. Furthermore, we demonstrate how off-diagonal system-environment interaction mediates anomalous localization by preventing long-time depopulation of the bridge B and how coherent transfer dynamics between donor D and acceptor A can be facilitated. The arising non-exponential short-time dynamics and coherent oscillations are interpreted within an equivalent Hamiltonian representation of a primary reaction coordinate model that reveals how the complex vibronic interplay of vibrational and electronic degrees of freedom underlying the non-Condon effects can impose donor-to-acceptor coherence transfer on short timescales.
Collapse
Affiliation(s)
- Nirmalendu Acharyya
- Max-Born-Institut für Nichtlineare Optik und Kurzzeitspektroskopie, D-12489 Berlin, Germany
| | - Roman Ovcharenko
- Max-Born-Institut für Nichtlineare Optik und Kurzzeitspektroskopie, D-12489 Berlin, Germany
| | - Benjamin P Fingerhut
- Max-Born-Institut für Nichtlineare Optik und Kurzzeitspektroskopie, D-12489 Berlin, Germany
| |
Collapse
|
8
|
Derr JB, Tamayo J, Clark JA, Morales M, Mayther MF, Espinoza EM, Rybicka-Jasińska K, Vullev VI. Multifaceted aspects of charge transfer. Phys Chem Chem Phys 2020; 22:21583-21629. [PMID: 32785306 PMCID: PMC7544685 DOI: 10.1039/d0cp01556c] [Citation(s) in RCA: 21] [Impact Index Per Article: 5.3] [Reference Citation Analysis] [Abstract] [Grants] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Indexed: 12/13/2022]
Abstract
Charge transfer and charge transport are by far among the most important processes for sustaining life on Earth and for making our modern ways of living possible. Involving multiple electron-transfer steps, photosynthesis and cellular respiration have been principally responsible for managing the energy flow in the biosphere of our planet since the Great Oxygen Event. It is impossible to imagine living organisms without charge transport mediated by ion channels, or electron and proton transfer mediated by redox enzymes. Concurrently, transfer and transport of electrons and holes drive the functionalities of electronic and photonic devices that are intricate for our lives. While fueling advances in engineering, charge-transfer science has established itself as an important independent field, originating from physical chemistry and chemical physics, focusing on paradigms from biology, and gaining momentum from solar-energy research. Here, we review the fundamental concepts of charge transfer, and outline its core role in a broad range of unrelated fields, such as medicine, environmental science, catalysis, electronics and photonics. The ubiquitous nature of dipoles, for example, sets demands on deepening the understanding of how localized electric fields affect charge transfer. Charge-transfer electrets, thus, prove important for advancing the field and for interfacing fundamental science with engineering. Synergy between the vastly different aspects of charge-transfer science sets the stage for the broad global impacts that the advances in this field have.
Collapse
Affiliation(s)
- James B Derr
- Department of Biochemistry, University of California, Riverside, CA 92521, USA.
| | | | | | | | | | | | | | | |
Collapse
|
9
|
Bazargan G, Curtin E, Sohlberg K. Comparing statistical predictions of quantum particle transit times in molecular systems to experimental measurements. JOURNAL OF THEORETICAL & COMPUTATIONAL CHEMISTRY 2020. [DOI: 10.1142/s0219633619500391] [Citation(s) in RCA: 1] [Impact Index Per Article: 0.3] [Reference Citation Analysis] [Abstract] [Track Full Text] [Subscribe] [Scholar Register] [Indexed: 11/18/2022]
Abstract
The movement of quantum particles between distinct spatial regions is an essential feature of nanoscale devices. Consequently, theoretical methods for characterizing the transit time associated with this movement may aid in identifying and refining nanoscale systems with desirable transport properties. Herein, we explore the utility and range of validity of a recently reported probabilistic method for quantifying the timescale of quantum particle transit. The method is applied to intramolecular proton transfer in dicarbonyl compounds, and electron transfer in donor-bridge-acceptor molecules. Direct comparison is made between statistical predictions of proton and electron transfer times and corresponding transfer times deduced from the previously reported experimental observables. Insights provided by the method into the path of flow of probability density are discussed.
Collapse
Affiliation(s)
- Gloria Bazargan
- Department of Chemistry, Drexel University, 3141 Chestnut Street, Philadelphia, PA 19104, USA
| | - Evan Curtin
- Department of Chemistry, Drexel University, 3141 Chestnut Street, Philadelphia, PA 19104, USA
| | - Karl Sohlberg
- Department of Chemistry, Drexel University, 3141 Chestnut Street, Philadelphia, PA 19104, USA
| |
Collapse
|
10
|
Liu S, Fu R, Li G. Exploring the mechanism of olfactory recognition in the initial stage by modeling the emission spectrum of electron transfer. PLoS One 2020; 15:e0217665. [PMID: 31923248 PMCID: PMC6953861 DOI: 10.1371/journal.pone.0217665] [Citation(s) in RCA: 1] [Impact Index Per Article: 0.3] [Reference Citation Analysis] [Abstract] [MESH Headings] [Grants] [Track Full Text] [Download PDF] [Figures] [Journal Information] [Subscribe] [Scholar Register] [Received: 05/14/2019] [Accepted: 11/29/2019] [Indexed: 11/19/2022] Open
Abstract
Olfactory sense remains elusive regarding the primary reception mechanism. Some studies suggest that olfaction is a spectral sense, the olfactory event is triggered by electron transfer (ET) across the odorants at the active sites of odorant receptors (ORs). Herein we present a Donor-Bridge-Acceptor model, proposing that the ET process can be viewed as an electron hopping from the donor molecule to the odorant molecule (Bridge), then hopping off to the acceptor molecule, making the electronic state of the odorant molecule change along with vibrations (vibronic transition). The odorant specific parameter, Huang–Rhys factor can be derived from ab initio calculations, which make the simulation of ET spectra achievable. In this study, we revealed that the emission spectra (after Gaussian convolution) can be acted as odor characteristic spectra. Using the emission spectrum of ET, we were able to reasonably interpret the similar bitter-almond odors among hydrogen cyanide, benzaldehyde and nitrobenzene. In terms of isotope effects, we succeeded in explaining why subjects can easily distinguish cyclopentadecanone from its fully deuterated analogue cyclopentadecanone-d28 but not distinguishing acetophenone from acetophenone-d8.
Collapse
Affiliation(s)
- Shu Liu
- Department of Anatomy, Anhui Medical University, Hefei, Anhui, China
- * E-mail:
| | - Rao Fu
- Department of Anatomy, School of Medicine, Sun Yat-sen University, Guangzhou, Guangdong, China
| | - Guangwu Li
- Department of Anatomy, Anhui Medical University, Hefei, Anhui, China
| |
Collapse
|
11
|
Narayanan M, Singh VR, Kodali G, Moravcevic K, Morris KJ, Stanley RJ. An Ethenoadenine FAD Analog Accelerates UV Dimer Repair by DNA Photolyase. Photochem Photobiol 2018; 93:343-354. [PMID: 27935052 DOI: 10.1111/php.12684] [Citation(s) in RCA: 5] [Impact Index Per Article: 0.8] [Reference Citation Analysis] [Abstract] [Journal Information] [Subscribe] [Scholar Register] [Received: 07/28/2016] [Accepted: 11/21/2016] [Indexed: 11/28/2022]
Abstract
Reduced anionic flavin adenine dinucleotide (FADH- ) is the critical cofactor in DNA photolyase (PL) for the repair of cyclobutane pyrimidine dimers (CPD) in UV-damaged DNA. The initial step involves photoinduced electron transfer from *FADH- to the CPD. The adenine (Ade) moiety is nearly stacked with the flavin ring, an unusual conformation compared to other FAD-dependent proteins. The role of this proximity has not been unequivocally elucidated. Some studies suggest that Ade is a radical intermediate, but others conclude that Ade modulates the electron transfer rate constant (kET ) through superexchange. No study has succeeded in removing or modifying this Ade to test these hypotheses. Here, FAD analogs containing either an ethano- or etheno-bridged Ade between the AN1 and AN6 atoms (e-FAD and ε-FAD, respectively) were used to reconstitute apo-PL, giving e-PL and ε-PL respectively. The reconstitution yield of e-PL was very poor, suggesting that the hydrophobicity of the ethano group prevented its uptake, while ε-PL showed 50% reconstitution yield. The substrate binding constants for ε-PL and rPL were identical. ε-PL showed a 15% higher steady-state repair yield compared to FAD-reconstituted photolyase (rPL). The acceleration of repair in ε-PL is discussed in terms of an ε-Ade radical intermediate vs superexchange mechanism.
Collapse
Affiliation(s)
| | - Vijay R Singh
- Postdoctoral Fellow at the Department of Nanoscience and Engineering, Indian Institute of Science, Bangalore, India
| | | | - Katarina Moravcevic
- Large Molecule Analytical Development, Janssen Research & Development, LLC, Horsham, PA
| | | | | |
Collapse
|
12
|
Fujitsuka M, Majima T. Reaction dynamics of excited radical ions revealed by femtosecond laser flash photolysis. JOURNAL OF PHOTOCHEMISTRY AND PHOTOBIOLOGY C-PHOTOCHEMISTRY REVIEWS 2018. [DOI: 10.1016/j.jphotochemrev.2017.12.003] [Citation(s) in RCA: 16] [Impact Index Per Article: 2.7] [Reference Citation Analysis] [Track Full Text] [Subscribe] [Scholar Register] [Indexed: 10/18/2022]
|
13
|
Gilbert M, Albinsson B. Photoinduced charge and energy transfer in molecular wires. Chem Soc Rev 2015; 44:845-62. [PMID: 25212903 DOI: 10.1039/c4cs00221k] [Citation(s) in RCA: 126] [Impact Index Per Article: 14.0] [Reference Citation Analysis] [Abstract] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Indexed: 12/28/2022]
Abstract
Exploring charge and energy transport in donor-bridge-acceptor systems is an important research field which is essential for the fundamental knowledge necessary to develop future applications. These studies help creating valuable knowledge to respond to today's challenges to develop functionalized molecular systems for artificial photosynthesis, photovoltaics or molecular scale electronics. This tutorial review focuses on photo-induced charge/energy transfer in covalently linked donor-bridge-acceptor (D-B-A) systems. Of utmost importance in such systems is to understand how to control signal transmission, i.e. how fast electrons or excitation energy could be transferred between the donor and acceptor and the role played by the bridge (the "molecular wire"). After a brief description of the electron and energy transfer theory, we aim to give a simple yet accurate picture of the complex role played by the bridge to sustain donor-acceptor electronic communication. Special emphasis is put on understanding bridge energetics and conformational dynamics effects on the distance dependence of the donor-acceptor electronic coupling and transfer rates. Several examples of donor-bridge-acceptor systems from the literature are described as a support to the discussion. Finally, porphyrin-based molecular wires are introduced, and the relationship between their electronic structure and photophysical properties is outlined. In strongly conjugated porphyrin systems, limitations of the existing electron transfer theory to interpret the distance dependence of the transfer rates are also discussed.
Collapse
Affiliation(s)
- Mélina Gilbert
- Department of Chemical and Biological Engineering/Physical Chemistry, Chalmers University of Technology, 412 96 Göteborg, Sweden.
| | | |
Collapse
|
14
|
Imaoka T, Kobayashi H, Katsurayama M, Yamamoto K. A potential gradient along the layer-by-layer architecture for electron transfer rectification. Dalton Trans 2015; 44:15116-20. [PMID: 25919437 DOI: 10.1039/c5dt00788g] [Citation(s) in RCA: 2] [Impact Index Per Article: 0.2] [Reference Citation Analysis] [Abstract] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Indexed: 11/21/2022]
Abstract
Electrochemical and photochemical measurements demonstrated that dendritic phenylazomethines, which can make complexes with SnCl2 by a stepwise process, only permit an outbound electron transfer. The unique dendrimer effect allows efficient production of photo-generated radical ion pairs by suppressing their charge recombination. In sharp contrast, the phenylenevinylene or benzylether dendrimers, which lack a heteroatom or π-conjugation, did not exhibit such non-symmetric characters.
Collapse
Affiliation(s)
- Takane Imaoka
- Chemical Resources Laboratory, Tokyo Institute of Technology, Yokohama, 226-8503, Japan.
| | | | | | | |
Collapse
|
15
|
Fujitsuka M, Ohsaka T, Majima T. Dual electron transfer pathways from the excited C60 radical anion: enhanced reactivities due to the photoexcitation of reaction intermediates. Phys Chem Chem Phys 2015; 17:31030-8. [DOI: 10.1039/c5cp05254h] [Citation(s) in RCA: 11] [Impact Index Per Article: 1.2] [Reference Citation Analysis] [Abstract] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Indexed: 11/21/2022]
Abstract
The excited C60 radical anion showed enhanced electron transfer.
Collapse
Affiliation(s)
- Mamoru Fujitsuka
- The Institute of Scientific and Industrial Research (SANKEN)
- Osaka University
- Ibaraki
- Japan
| | - Tatsuya Ohsaka
- The Institute of Scientific and Industrial Research (SANKEN)
- Osaka University
- Ibaraki
- Japan
| | - Tetsuro Majima
- The Institute of Scientific and Industrial Research (SANKEN)
- Osaka University
- Ibaraki
- Japan
| |
Collapse
|
16
|
Ley D, Guzman CX, Adolfsson KH, Scott AM, Braunschweig AB. Cooperatively Assembling Donor–Acceptor Superstructures Direct Energy Into an Emergent Charge Separated State. J Am Chem Soc 2014; 136:7809-12. [DOI: 10.1021/ja5015053] [Citation(s) in RCA: 71] [Impact Index Per Article: 7.1] [Reference Citation Analysis] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Indexed: 12/24/2022]
Affiliation(s)
- David Ley
- Department of Chemistry, University of Miami, Coral Gables, Florida 33146, United States
| | - Carmen X. Guzman
- Department of Chemistry, University of Miami, Coral Gables, Florida 33146, United States
| | - Karin H. Adolfsson
- Department of Chemistry, University of Miami, Coral Gables, Florida 33146, United States
| | - Amy M. Scott
- Department of Chemistry, University of Miami, Coral Gables, Florida 33146, United States
| | - Adam B. Braunschweig
- Department of Chemistry, University of Miami, Coral Gables, Florida 33146, United States
| |
Collapse
|
17
|
Zamadar M, Cook AR, Lewandowska-Andralojc A, Holroyd R, Jiang Y, Bikalis J, Miller JR. Electron Transfer by Excited Benzoquinone Anions: Slow Rates for Two-Electron Transitions. J Phys Chem A 2013; 117:8360-7. [DOI: 10.1021/jp403113u] [Citation(s) in RCA: 14] [Impact Index Per Article: 1.3] [Reference Citation Analysis] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Indexed: 01/14/2023]
Affiliation(s)
- Matibur Zamadar
- Chemistry Department, Brookhaven National Laboratory, Upton, New York 11973-5000,
United States
| | - Andrew R. Cook
- Chemistry Department, Brookhaven National Laboratory, Upton, New York 11973-5000,
United States
| | | | - Richard Holroyd
- Chemistry Department, Brookhaven National Laboratory, Upton, New York 11973-5000,
United States
| | - Yan Jiang
- Chemistry Department, Brookhaven National Laboratory, Upton, New York 11973-5000,
United States
| | - Jin Bikalis
- Chemistry Department, Brookhaven National Laboratory, Upton, New York 11973-5000,
United States
| | - John R. Miller
- Chemistry Department, Brookhaven National Laboratory, Upton, New York 11973-5000,
United States
| |
Collapse
|
18
|
Duvanel G, Grilj J, Vauthey E. Ultrafast long-distance excitation energy transport in donor-bridge-acceptor systems. J Phys Chem A 2013; 117:918-28. [PMID: 23327635 DOI: 10.1021/jp311540x] [Citation(s) in RCA: 18] [Impact Index Per Article: 1.6] [Reference Citation Analysis] [Abstract] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Indexed: 12/25/2022]
Abstract
The excited-state dynamics of two energy donor-bridge-acceptor (D-B-A) systems consisting of a zinc tetraphenylporphyrin (ZnP) and a free base tetraphenylporphyrin (FbP) bridged by oligo-p-phenyleneethynylene units with different substituents has been investigated using ultrafast spectroscopy. These systems differ by the location of the lowest singlet excited state of the bridge, just above or below the S(2) porphyrin states. In the first case, Soret band excitation of the porphyrins is followed by internal conversion to the local S(1) state of both molecules and by a S(1) energy transfer from the ZnP to the FbP end on the 10 ns time scale, as expected for a center-to-center distance of about 4.7 nm. On the other hand, if the bridge is excited, the energy is efficiently transferred within 1 ps to both porphyrin ends. Selective bridge excitation is not possible with the second system, because of the overlap of the absorption bands. However, the time-resolved spectroscopic data suggest a reversible conversion between the D*(S(2))-B-A and D-B*(S(1))-A states as well as a transition from the D-B*(S(1))-A to the D-B-A* states on the picosecond time scale. This implies that the local S(2) energy of the ZnP end can be transported stepwise to the FbP end, i.e., over about 4.7 nm, within 1 ps with an efficiency of more than 0.2.
Collapse
Affiliation(s)
- Guillaume Duvanel
- Department of Physical Chemistry, University of Geneva , 30 Quai Ernest-Ansermet, CH-1211 Geneva 4, Switzerland
| | | | | |
Collapse
|
19
|
Ding F, Chapman CT, Liang W, Li X. Mechanisms of bridge-mediated electron transfer: A TDDFT electronic dynamics study. J Chem Phys 2012; 137:22A512. [DOI: 10.1063/1.4738959] [Citation(s) in RCA: 17] [Impact Index Per Article: 1.4] [Reference Citation Analysis] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Indexed: 12/19/2022] Open
|
20
|
Feng K, Yu ML, Wang SM, Wang GX, Tung CH, Wu LZ. Photoinduced Triplet-Triplet Energy Transfer in a 2-Ureido-4(1H)-Pyrimidinone-Bridged, Quadruply Hydrogen-Bonded Ferrocene-Fullerene Assembly. Chemphyschem 2012. [DOI: 10.1002/cphc.201200818] [Citation(s) in RCA: 26] [Impact Index Per Article: 2.2] [Reference Citation Analysis] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Indexed: 11/10/2022]
|
21
|
Bridged 3,3″′-didodecylquaterthiophene-based dimers: design, synthesis, and optoelectronic properties. Tetrahedron 2012. [DOI: 10.1016/j.tet.2012.04.072] [Citation(s) in RCA: 1] [Impact Index Per Article: 0.1] [Reference Citation Analysis] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Indexed: 11/19/2022]
|
22
|
Ricks AB, Brown KE, Wenninger M, Karlen SD, Berlin YA, Co DT, Wasielewski MR. Exponential distance dependence of photoinitiated stepwise electron transfer in donor-bridge-acceptor molecules: implications for wirelike behavior. J Am Chem Soc 2012; 134:4581-8. [PMID: 22335614 DOI: 10.1021/ja205913q] [Citation(s) in RCA: 50] [Impact Index Per Article: 4.2] [Reference Citation Analysis] [Abstract] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Indexed: 11/29/2022]
Abstract
Donor-bridge-acceptor (D-B-A) systems in which a 3,5-dimethyl-4-(9-anthracenyl)julolidine (DMJ-An) chromophore and a naphthalene-1,8:4,5-bis(dicarboximide) (NI) acceptor are linked by oligomeric 2,7-fluorenone (FN(n)) bridges (n = 1-3) have been synthesized. Selective photoexcitation of DMJ-An quantitatively produces DMJ(+•)-An(-•), and An(-•) acts as a high-potential electron donor. Femtosecond transient absorption spectroscopy in the visible and mid-IR regions showed that electron transfer occurs quantitatively in the sequence: DMJ(+•)-An(-•)-FN(n)-NI → DMJ(+•)-An-FN(n)(-•)-NI → DMJ(+•)-An-FN(n)-NI(-•). The charge-shift reaction from An(-•) to NI(-•) exhibits an exponential distance dependence in the nonpolar solvent toluene with an attenuation factor (β) of 0.34 Å(-1), which would normally be attributed to electron tunneling by the superexchange mechanism. However, the FN(n)(-•) radical anion was directly observed spectroscopically as an intermediate in the charge-separation mechanism, thereby demonstrating conclusively that the overall charge separation involves the incoherent hopping (stepwise) mechanism. Kinetic modeling of the data showed that the observed exponential distance dependence is largely due to electron injection onto the first FN unit followed by charge hopping between the FN units of the bridge biased by the distance-dependent electrostatic attraction of the two charges in D(+•)-B(-•)-A. This work shows that wirelike behavior does not necessarily result from building a stepwise, energetically downhill redox gradient into a D-B-A molecule.
Collapse
Affiliation(s)
- Annie Butler Ricks
- Department of Chemistry and Argonne-Northwestern Solar Energy Research (ANSER) Center, Northwestern University, Evanston, Illinois 60208-3113, United States
| | | | | | | | | | | | | |
Collapse
|
23
|
Wu HY, Ren HS, Zhu Q, Li XY. A modified two-sphere model for solvent reorganization energy in electron transfer. Phys Chem Chem Phys 2012; 14:5538-44. [DOI: 10.1039/c2cp23759h] [Citation(s) in RCA: 15] [Impact Index Per Article: 1.3] [Reference Citation Analysis] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Indexed: 02/01/2023]
|
24
|
Imaoka T, Inoue N, Yamamoto K. Electron-transfer through potential gradient based on a dendrimer architecture. Chem Commun (Camb) 2012; 48:7235-7. [DOI: 10.1039/c2cc31954c] [Citation(s) in RCA: 8] [Impact Index Per Article: 0.7] [Reference Citation Analysis] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Indexed: 11/21/2022]
|
25
|
Quaterthiophene-based dimers containing an ethylene bridge: molecular design, synthesis, and optoelectronic properties. Tetrahedron 2012. [DOI: 10.1016/j.tet.2011.10.020] [Citation(s) in RCA: 9] [Impact Index Per Article: 0.8] [Reference Citation Analysis] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Indexed: 11/20/2022]
|
26
|
LI XIANGYUAN, HE FUCHENG, FU KEXIANG, LIU WENJIAN. SOLVATION ENERGY OF NONEQUILIBRIUM POLARIZATION: OLD QUESTION, NEW ANSWER. JOURNAL OF THEORETICAL & COMPUTATIONAL CHEMISTRY 2011. [DOI: 10.1142/s0219633610005591] [Citation(s) in RCA: 15] [Impact Index Per Article: 1.2] [Reference Citation Analysis] [Abstract] [Track Full Text] [Subscribe] [Scholar Register] [Indexed: 11/18/2022]
Abstract
Although an old question, the electrostatic free energy of nonequilibrium solvation in a continuous dielectric has recently been disputed. Here we show that the nonequilibrium solvation energy can be obtained without any ambiguity by imposing a suitable external electric field with its source localized in the ambient so as to bring the nonequilibrium into an equilibrium state but constrain its charge distribution, polarization, and entropy unchanged. As an application, a two-sphere cavity model is proposed for estimating the solvent reorganization energy, which solves the longstanding issue that it tends to be overestimated by a factor of two by the popular continuum models.
Collapse
Affiliation(s)
- XIANG-YUAN LI
- College of Chemical Engineering, Sichuan University, Chengdu 610065, P. R. China
| | - FU-CHENG HE
- College of Chemical Engineering, Sichuan University, Chengdu 610065, P. R. China
| | - KE-XIANG FU
- College of Chemical Engineering, Sichuan University, Chengdu 610065, P. R. China
| | - WENJIAN LIU
- Beijing National Laboratory for Molecular Sciences, Institute of Theoretical and Computational Chemistry, State Key Laboratory of Rare Earth Materials Chemistry and Applications, College of Chemistry and Molecular Engineering, P. R. China
- Center for Computational Science and Engineering, Peking University, Beijing 100871, P. R. China
| |
Collapse
|
27
|
Scott AM, Wasielewski MR. Temperature Dependence of Spin-Selective Charge Transfer Pathways in Donor−Bridge−Acceptor Molecules with Oligomeric Fluorenone and p-Phenylethynylene Bridges. J Am Chem Soc 2011; 133:3005-13. [DOI: 10.1021/ja1095649] [Citation(s) in RCA: 30] [Impact Index Per Article: 2.3] [Reference Citation Analysis] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Indexed: 12/28/2022]
Affiliation(s)
- Amy M. Scott
- Department of Chemistry and Argonne-Northwestern Solar Energy Research (ANSER) Center, Northwestern University, Evanston, Illinois 60208-3113, United States
| | - Michael R. Wasielewski
- Department of Chemistry and Argonne-Northwestern Solar Energy Research (ANSER) Center, Northwestern University, Evanston, Illinois 60208-3113, United States
| |
Collapse
|
28
|
Liu H, Kang S, Lee JY. Electronic Structures and Charge Transport of Stacked Annelated β-Trithiophenes. J Phys Chem B 2010; 115:5113-20. [DOI: 10.1021/jp1045595] [Citation(s) in RCA: 30] [Impact Index Per Article: 2.1] [Reference Citation Analysis] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Indexed: 11/29/2022]
Affiliation(s)
- Hongguang Liu
- Department of Chemistry, Sungkyunkwan University, Suwon 440-746, Korea
| | - Sunwoo Kang
- Department of Chemistry, Sungkyunkwan University, Suwon 440-746, Korea
| | - Jin Yong Lee
- Department of Chemistry, Sungkyunkwan University, Suwon 440-746, Korea
| |
Collapse
|
29
|
Ricks AB, Solomon GC, Colvin MT, Scott AM, Chen K, Ratner MA, Wasielewski MR. Controlling Electron Transfer in Donor−Bridge−Acceptor Molecules Using Cross-Conjugated Bridges. J Am Chem Soc 2010; 132:15427-34. [DOI: 10.1021/ja107420a] [Citation(s) in RCA: 132] [Impact Index Per Article: 9.4] [Reference Citation Analysis] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Indexed: 02/08/2023]
Affiliation(s)
- Annie Butler Ricks
- Department of Chemistry and Argonne-Northwestern Solar Energy Research (ANSER) Center, Northwestern University, Evanston, Illinois 60208-3113, United States
| | - Gemma C. Solomon
- Department of Chemistry and Argonne-Northwestern Solar Energy Research (ANSER) Center, Northwestern University, Evanston, Illinois 60208-3113, United States
| | - Michael T. Colvin
- Department of Chemistry and Argonne-Northwestern Solar Energy Research (ANSER) Center, Northwestern University, Evanston, Illinois 60208-3113, United States
| | - Amy M. Scott
- Department of Chemistry and Argonne-Northwestern Solar Energy Research (ANSER) Center, Northwestern University, Evanston, Illinois 60208-3113, United States
| | - Kun Chen
- Department of Chemistry and Argonne-Northwestern Solar Energy Research (ANSER) Center, Northwestern University, Evanston, Illinois 60208-3113, United States
| | - Mark A. Ratner
- Department of Chemistry and Argonne-Northwestern Solar Energy Research (ANSER) Center, Northwestern University, Evanston, Illinois 60208-3113, United States
| | - Michael R. Wasielewski
- Department of Chemistry and Argonne-Northwestern Solar Energy Research (ANSER) Center, Northwestern University, Evanston, Illinois 60208-3113, United States
| |
Collapse
|
30
|
Tanaka M, Tanimura Y. Multistate electron transfer dynamics in the condensed phase: Exact calculations from the reduced hierarchy equations of motion approach. J Chem Phys 2010; 132:214502. [DOI: 10.1063/1.3428674] [Citation(s) in RCA: 79] [Impact Index Per Article: 5.6] [Reference Citation Analysis] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Indexed: 01/10/2023] Open
|
31
|
Xu J, Wang QD, Zhu Q, Fu KX, He FC, Li XY. Time-Dependent Stokes Shift from Solvent Dielectric Relaxation. CHINESE J CHEM PHYS 2010. [DOI: 10.1088/1674-0068/23/03/297-302] [Citation(s) in RCA: 0] [Impact Index Per Article: 0] [Reference Citation Analysis] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Indexed: 11/12/2022]
|
32
|
Scott A, Butler Ricks A, Colvin M, Wasielewski M. Comparing Spin-Selective Charge Transport through Donor-Bridge-Acceptor Molecules with Different Oligomeric Aromatic Bridges. Angew Chem Int Ed Engl 2010; 49:2904-8. [DOI: 10.1002/anie.201000171] [Citation(s) in RCA: 37] [Impact Index Per Article: 2.6] [Reference Citation Analysis] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Received: 01/12/2010] [Indexed: 02/04/2023]
|
33
|
Scott A, Butler Ricks A, Colvin M, Wasielewski M. Comparing Spin-Selective Charge Transport through Donor-Bridge-Acceptor Molecules with Different Oligomeric Aromatic Bridges. Angew Chem Int Ed Engl 2010. [DOI: 10.1002/ange.201000171] [Citation(s) in RCA: 12] [Impact Index Per Article: 0.9] [Reference Citation Analysis] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Indexed: 11/09/2022]
|
34
|
Influences of protonation and hydrogen bonding on intramolecular charge transfer compounds possessing different spacers. J Photochem Photobiol A Chem 2010. [DOI: 10.1016/j.jphotochem.2009.12.005] [Citation(s) in RCA: 5] [Impact Index Per Article: 0.4] [Reference Citation Analysis] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Indexed: 12/29/2022]
|
35
|
Saito K, Sumi H. Unified expression for the rate constant of the bridged electron transfer derived by renormalization. J Chem Phys 2009; 131:134101. [PMID: 19814537 DOI: 10.1063/1.3223280] [Citation(s) in RCA: 10] [Impact Index Per Article: 0.7] [Reference Citation Analysis] [Abstract] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Indexed: 11/14/2022] Open
Abstract
Electron transfer (ET) from a donor to an acceptor through an energetically close intermediary state on a midway molecule is a process found often in natural and artificial solar-energy capturing systems such as photosynthesis. This process has often been thought of in terms of opposing "superexchange" and "sequential or hopping" mechanisms, and the recent theory of Sumi and Kakitani (SK) [J. Phys. Chem. B 105, 9603 (2001)] has shown an interpolation between these mechanisms. In their theory, however, dynamics governing the most interesting intermediary region between them has artificially been introduced by phenomenologies. The dynamics is played by decoherence among electronic states, their decay, and thermalization of phonons in the medium. The present work clarifies the dynamics on a microscopic basis by means of renormalization in electronic coupling among the states, and gives a complete unified expression of the rate constant of the ET. It merges to that given by the SK theory in the semiclassical approximation for phonons interacting with an electron transferred.
Collapse
Affiliation(s)
- Keisuke Saito
- Institute of Materials Science, University of Tsukuba, Tsukuba 305-8573, Japan.
| | | |
Collapse
|
36
|
Scott AM, Miura T, Ricks AB, Dance ZEX, Giacobbe EM, Colvin MT, Wasielewski MR. Spin-Selective Charge Transport Pathways through p-Oligophenylene-Linked Donor−Bridge−Acceptor Molecules. J Am Chem Soc 2009; 131:17655-66. [DOI: 10.1021/ja907625k] [Citation(s) in RCA: 79] [Impact Index Per Article: 5.3] [Reference Citation Analysis] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Indexed: 12/22/2022]
Affiliation(s)
- Amy M. Scott
- Department of Chemistry and Argonne-Northwestern Solar Energy Research (ANSER) Center, Northwestern University, Evanston, Illinois 60208-3113
| | - Tomoaki Miura
- Department of Chemistry and Argonne-Northwestern Solar Energy Research (ANSER) Center, Northwestern University, Evanston, Illinois 60208-3113
| | - Annie Butler Ricks
- Department of Chemistry and Argonne-Northwestern Solar Energy Research (ANSER) Center, Northwestern University, Evanston, Illinois 60208-3113
| | - Zachary E. X. Dance
- Department of Chemistry and Argonne-Northwestern Solar Energy Research (ANSER) Center, Northwestern University, Evanston, Illinois 60208-3113
| | - Emilie M. Giacobbe
- Department of Chemistry and Argonne-Northwestern Solar Energy Research (ANSER) Center, Northwestern University, Evanston, Illinois 60208-3113
| | - Michael T. Colvin
- Department of Chemistry and Argonne-Northwestern Solar Energy Research (ANSER) Center, Northwestern University, Evanston, Illinois 60208-3113
| | - Michael R. Wasielewski
- Department of Chemistry and Argonne-Northwestern Solar Energy Research (ANSER) Center, Northwestern University, Evanston, Illinois 60208-3113
| |
Collapse
|
37
|
Myers CP, Miller JR, Williams ME. Impacts of the Location and Number of [Cu(bpy)2]2+ Cross-Links on the Emission Photodynamics of [Ru(bpy)3]2+ with Pendant Oligo(aminoethylglycine) Chains. J Am Chem Soc 2009; 131:15291-300. [DOI: 10.1021/ja905493x] [Citation(s) in RCA: 16] [Impact Index Per Article: 1.1] [Reference Citation Analysis] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Indexed: 01/20/2023]
Affiliation(s)
- Carl P. Myers
- Department of Chemistry, 104 Chemistry Building, and Huck Institutes of the Life Sciences Mass Spectrometry Facility, 3 Althouse Laboratory, The Pennsylvania State University, University Park, Pennsylvania 16802
| | - James R. Miller
- Department of Chemistry, 104 Chemistry Building, and Huck Institutes of the Life Sciences Mass Spectrometry Facility, 3 Althouse Laboratory, The Pennsylvania State University, University Park, Pennsylvania 16802
| | - Mary Elizabeth Williams
- Department of Chemistry, 104 Chemistry Building, and Huck Institutes of the Life Sciences Mass Spectrometry Facility, 3 Althouse Laboratory, The Pennsylvania State University, University Park, Pennsylvania 16802
| |
Collapse
|
38
|
Wang YF, Yang G, Liu CB. Electron transfers in proteins: investigations with a modified through-bond coupling model. PHYSICAL REVIEW. E, STATISTICAL, NONLINEAR, AND SOFT MATTER PHYSICS 2009; 80:021927. [PMID: 19792171 DOI: 10.1103/physreve.80.021927] [Citation(s) in RCA: 2] [Impact Index Per Article: 0.1] [Reference Citation Analysis] [Abstract] [MESH Headings] [Track Full Text] [Subscribe] [Scholar Register] [Received: 02/16/2009] [Revised: 07/15/2009] [Indexed: 05/28/2023]
Abstract
By integrating the merits of previous models, a modified through-bond coupling (MTBC) model is proposed in this work and shows obvious improvement compared with previous models. With the MTBC model, the dominant electron coupling pathways in the polypeptide chains were identified, where the N-H bonds were found to be essential to the electron couplings. The local structures of peptides and proteins were finely characterized by the electron couplings and decay factors since they are structure sensitive. The neighboring carbonyl O-O distances are qualitatively correlated with the decay factors, and the deviations from the transconfigurations will weaken the coupling interactions. When the two amino acids being studied are not close in sequence, the couplings through hydrogen bonds are probably the main pathway because the electron transfers in this way save many steps, albeit the decay factor is less than that of per bond, consistent with the classical electron-tunneling model developed by Beratan [Science 252, 1285 (1991)]. It was found that the MTBC model can be effectively extended to study the electron transfers in complex biological systems with the combination of the fragment approach, which takes into account the contributions of key hydrogen bonds.
Collapse
Affiliation(s)
- Ye-Fei Wang
- Institute of Theoretical Chemistry, Shandong University, Jinan, 250100 Shandong, People's Republic of China
| | | | | |
Collapse
|
39
|
Chaignon F, Buchet F, Blart E, Falkenström M, Hammarström L, Odobel F. Photoinduced electron transfer in ruthenium(ii) trisbipyridine complexes connected to a naphthalenebisimidevia an oligo(phenyleneethynylene) spacer. NEW J CHEM 2009. [DOI: 10.1039/b810856k] [Citation(s) in RCA: 16] [Impact Index Per Article: 1.1] [Reference Citation Analysis] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Indexed: 11/21/2022]
|
40
|
Saito K, Kikuchi T, Mukai K, Sumi H. Sequential or superexchange mechanism in bridged electron transfer distinguished by dynamics at a bridging molecule. Phys Chem Chem Phys 2009; 11:5290-301. [DOI: 10.1039/b822206a] [Citation(s) in RCA: 7] [Impact Index Per Article: 0.5] [Reference Citation Analysis] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Indexed: 11/21/2022]
|
41
|
SUN Y, CHEN YH, LI YZ, LI YQ, MA FC. Intramolecular Charge Transfer of Carotene-porphyrin-fullerene Triad: Sequential or Superexchange Cechanism. CHINESE J CHEM 2008. [DOI: 10.1002/cjoc.200890180] [Citation(s) in RCA: 2] [Impact Index Per Article: 0.1] [Reference Citation Analysis] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Indexed: 11/10/2022]
|
42
|
Wang JB, Ma JY, Li XY, He FC, Fu KX. Solvent Reorganization Energy and Electronic Coupling for Intramolecular Electron Transfer in Biphenyl-Acceptor Anion Radicals. CHINESE J CHEM PHYS 2008. [DOI: 10.1088/1674-0068/21/01/45-54] [Citation(s) in RCA: 1] [Impact Index Per Article: 0.1] [Reference Citation Analysis] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Indexed: 11/11/2022]
|
43
|
Benniston A, Harriman A, Rewinska D, Yang S, Zhi YG. On the Conjugation Length for Oligo(ethynylnaphthalene)-Based Molecular Rods. Chemistry 2007; 13:10194-203. [DOI: 10.1002/chem.200701235] [Citation(s) in RCA: 16] [Impact Index Per Article: 0.9] [Reference Citation Analysis] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Indexed: 11/07/2022]
|
44
|
Long-range electron and charge transfers in peptide bridging phthalimide and methyl aminoacetate radical systems: Super-exchange and hopping mechanisms. Chem Phys Lett 2006. [DOI: 10.1016/j.cplett.2006.04.118] [Citation(s) in RCA: 4] [Impact Index Per Article: 0.2] [Reference Citation Analysis] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Indexed: 11/21/2022]
|
45
|
Dance ZEX, Mi Q, McCamant DW, Ahrens MJ, Ratner MA, Wasielewski MR. Time-Resolved EPR Studies of Photogenerated Radical Ion Pairs Separated by p-Phenylene Oligomers and of Triplet States Resulting from Charge Recombination. J Phys Chem B 2006; 110:25163-73. [PMID: 17165960 DOI: 10.1021/jp063690n] [Citation(s) in RCA: 119] [Impact Index Per Article: 6.6] [Reference Citation Analysis] [Abstract] [MESH Headings] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Indexed: 12/12/2022]
Abstract
Photoexcitation of a series of donor-bridge-acceptor (D-B-A) systems, where D = phenothiazine (PTZ), B = p-phenylene (Phn), n = 1-5, and A= perylene-3,4:9,10-bis(dicarboximide) (PDI) results in rapid electron transfer to produce 1(PTZ+*-Phn-PDI-*). Time-resolved EPR (TREPR) studies of the photogenerated radical pairs (RPs) show that above 150 K, when n = 2-5, the radical pair-intersystem crossing mechanism (RP-ISC) produces spin-correlated radical ion pairs having electron spin polarization patterns indicating that the spin-spin exchange interaction in the radical ion pair is positive, 2J > 0, and is temperature dependent. This temperature dependence is most likely due to structural changes of the p-phenylene bridge. Charge recombination in the RPs generates PTZ-Phn-3*PDI, which exhibits a spin-polarized signal similar to that observed in photosynthetic reaction-center proteins and some biomimetic systems. At temperatures below 150 K and/or at shorter donor-acceptor distances, e.g., when n = 1, PTZ-Phn-3*PDI is also formed from a competitive spin-orbit-intersystem crossing (SO-ISC) mechanism that is a result of direct charge recombination: 1(PTZ+*-Phn-PDI-*) --> PTZ-Phn-3*PDI. This SO-ISC mechanism requires the initial RP intermediate and depends strongly on the orientation of the molecular orbitals involved in the charge recombination as well as the magnitude of 2J.
Collapse
Affiliation(s)
- Zachary E X Dance
- Department of Chemistry and International Institute for Nanotechnology, Northwestern University, Evanston, Illinois 60208-3113, USA
| | | | | | | | | | | |
Collapse
|
46
|
Non-innocent electrolyte effects on bimolecular pseudo-self-exchange reactions of ruthenium ammine complexes: Evidence for electron-transfer catalysis in H-bonded ternary assemblies. Chem Phys 2006. [DOI: 10.1016/j.chemphys.2005.11.035] [Citation(s) in RCA: 2] [Impact Index Per Article: 0.1] [Reference Citation Analysis] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Indexed: 11/20/2022]
|
47
|
Guldi DM, Rahman GMA, Sgobba V, Ehli C. Multifunctional molecular carbon materials--from fullerenes to carbon nanotubes. Chem Soc Rev 2006; 35:471-87. [PMID: 16636729 DOI: 10.1039/b511541h] [Citation(s) in RCA: 360] [Impact Index Per Article: 20.0] [Reference Citation Analysis] [Abstract] [MESH Headings] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Indexed: 12/20/2022]
Abstract
This critical review covers the timely topic of carbon nanostructures-fullerenes and carbon nanotubes-in combination with metalloporphyrins as integrative components for electron-donor-acceptor ensembles. These ensembles are typically probed in condensed media and at semi-transparent electrode surfaces. In particular, we will present a comprehensive survey of a variety of covalent (i.e., nanoconjugates) and non-covalent linkages (i.e., nanohybrids) to demonstrate how to govern/fine-tune the electronic interactions in the resulting electron-donor-acceptor ensembles. In the context of covalent bridges, different spacers will be discussed, which range from pure "insulators" (i.e., amide bonds, etc.) to sophisticated "molecular wires" (i.e., p-phenylenevinylene units, etc.). Furthermore, we will elucidate the fundamental impact that these vastly different spacers may exert on the rate, efficiency, and mechanism of short- and long-range electron transfer reactions. Additionally, a series of non-covalent motifs will be described: hydrogen bonding, complementary electrostatics, pi-pi stacking and metal coordination-to name a few. These motifs have been successfully employed by us and our collaborators en route towards novel architectures (i.e., linear structures, tubular structures, rotaxanes, catenanes, etc.) that exhibit unique and remarkable charge transfer features.
Collapse
Affiliation(s)
- Dirk M Guldi
- Universität Erlangen, Institute for Physical and Theoretical Chemistry, 91058 Erlangen, Germany
| | | | | | | |
Collapse
|
48
|
Lewis FD, Zhu H, Daublain P, Fiebig T, Raytchev M, Wang Q, Shafirovich V. Crossover from Superexchange to Hopping as the Mechanism for Photoinduced Charge Transfer in DNA Hairpin Conjugates. J Am Chem Soc 2005; 128:791-800. [PMID: 16417368 DOI: 10.1021/ja0540831] [Citation(s) in RCA: 148] [Impact Index Per Article: 7.8] [Reference Citation Analysis] [Abstract] [MESH Headings] [Grants] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Indexed: 11/28/2022]
Abstract
The mechanism and dynamics of photoinduced charge separation and charge recombination have been investigated in synthetic DNA hairpins possessing donor and acceptor stilbenes separated by one to seven A:T base pairs. The application of femtosecond broadband pump-probe spectroscopy, nanosecond transient absorption spectroscopy, and picosecond fluorescence decay measurements permits detailed analysis of the formation and decay of the stilbene acceptor singlet state and of the charge-separated intermediates. When the donor and acceptor are separated by a single A:T base pair, charge separation occurs via a single-step superexchange mechanism. However, when the donor and acceptor are separated by two or more A:T base pairs, charge separation occurs via a multistep process consisting of hole injection, hole transport, and hole trapping. In such cases, hole arrival at the electron donor is slower than hole injection into the bridging A-tract. Rate constants for charge separation (hole arrival) and charge recombination are dependent upon the donor-acceptor distance; however, the rate constant for hole injection is independent of the donor-acceptor distance. The observation of crossover from a superexchange to a hopping mechanism provides a "missing link" in the analysis of DNA electron transfer and requires reevaluation of the existing literature for photoinduced electron transfer in DNA.
Collapse
Affiliation(s)
- Frederick D Lewis
- Department of Chemistry, Northwestern University, Evanston, Illinois 60201, USA.
| | | | | | | | | | | | | |
Collapse
|
49
|
Sun M, Song P, Chen Y, Ma F. Intramolecular charge transfer in the porphyrin–oligothiophene–fullerene triad. Chem Phys Lett 2005. [DOI: 10.1016/j.cplett.2005.09.067] [Citation(s) in RCA: 21] [Impact Index Per Article: 1.1] [Reference Citation Analysis] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Indexed: 10/25/2022]
|
50
|
Weiss EA, Tauber MJ, Kelley RF, Ahrens MJ, Ratner MA, Wasielewski MR. Conformationally Gated Switching between Superexchange and Hopping within Oligo-p-phenylene-Based Molecular Wires. J Am Chem Soc 2005; 127:11842-50. [PMID: 16104763 DOI: 10.1021/ja052901j] [Citation(s) in RCA: 153] [Impact Index Per Article: 8.1] [Reference Citation Analysis] [Abstract] [MESH Headings] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Indexed: 12/13/2022]
Abstract
We observe well-defined regions of superexchange and thermally activated hopping in the temperature dependence of charge recombination (CR) in a series of donor-bridge-acceptor (D-B-A) systems, where D = phenothiazine (PTZ), B = p-phenylene (Ph(n)), n = 1-4, and A = perylene-3,4:9,10-bis(dicarboximide) (PDI). A fit to the thermally activated CR rates of the n = 3 and n = 4 compounds yields activation barriers of 1290 and 2030 cm(-1), respectively, which match closely with theoretically predicted and experimentally observed barriers for the planarization of terphenyl and quaterphenyl. Negative activation of CR in the temperature regions dominated by superexchange charge transport is the result of a fast conformational equilibrium that increasingly depopulates the reactive state for CR as temperature is increased. The temperature dependence of the effective donor-acceptor superexchange coupling, V(DA), measured using magnetic field effects on the efficiency of the charge recombination process, shows that CR occurs out of the conformation with lower V(DA) via the energetically favored triplet pathway.
Collapse
Affiliation(s)
- Emily A Weiss
- Center for Nanofabrication and Molecular Self-Assembly and Department of Chemistry, Northwestern University, Evanston, Illinois 60208-3113, USA
| | | | | | | | | | | |
Collapse
|