1
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Asplund M, Koga M, Wu YJ, Neumark DM. Time-resolved photoelectron spectroscopy of iodide-4-thiouracil cluster: The ππ* state as a doorway for electron attachment. J Chem Phys 2024; 160:054301. [PMID: 38299627 DOI: 10.1063/5.0187557] [Citation(s) in RCA: 0] [Impact Index Per Article: 0] [Reference Citation Analysis] [Abstract] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Received: 11/14/2023] [Accepted: 01/09/2024] [Indexed: 02/02/2024] Open
Abstract
The photophysics of thiobases-nucleobases in which one or more oxygen atoms are replaced with sulfur atoms- vary greatly depending on the location of sulfonation. Not only are direct dynamics of a neutral thiobase impacted, but also the dynamics of excess electron accommodation. In this work, time-resolved photoelectron spectroscopy is used to measure binary anionic clusters of iodide and 4-thiouracil, I- · 4TU. We investigate charge transfer dynamics driven by excitation at 3.88 eV, corresponding to the lowest ππ* transition of the thiouracil, and at 4.16 eV, near the cluster vertical detachment energy. The photoexcited state dynamics are probed by photodetachment with 1.55 and 3.14 eV pulses. Excitation at 3.88 eV leads to a signal from a valence-bound ion only, indicating a charge accommodation mechanism that does not involve a dipole-bound anion as an intermediate. Excitation at 4.16 eV rapidly gives rise to dipole-bound and valence-bound ion signals, with a second rise in the valence-bound signal corresponding to the decay of the dipole-bound signal. The dynamics associated with the low energy ππ* excitation of 4-thiouracil provide a clear experimental proof for the importance of localized excitation and electron backfilling in halide-nucleobase clusters.
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Affiliation(s)
- Megan Asplund
- Department of Chemistry, University of California, Berkeley, California 94720, USA
| | - Masafumi Koga
- Department of Chemistry, University of California, Berkeley, California 94720, USA
| | - Ying Jung Wu
- Department of Chemistry, University of California, Berkeley, California 94720, USA
| | - Daniel M Neumark
- Department of Chemistry, University of California, Berkeley, California 94720, USA
- Chemical Sciences Division, Lawrence Berkeley National Laboratory, Berkeley, California 94720, USA
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2
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Mato J, Willow SY, Werhahn JC, Xantheas SS. The Back Door to the Surface Hydrated Electron. J Phys Chem Lett 2023; 14:8221-8226. [PMID: 37672781 DOI: 10.1021/acs.jpclett.3c01479] [Citation(s) in RCA: 0] [Impact Index Per Article: 0] [Reference Citation Analysis] [Abstract] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Indexed: 09/08/2023]
Abstract
We use a Mg+ metal to extend the size regime of aqueous clusters to extrapolate to the bulk limit of the vertical detachment energy (VDE) of the solvated electron to >3,200, a value between 1 to over 2 orders of magnitude larger than the one previously measured experimentally or computed theoretically. We relate the VDE to the energy difference between the Mg+(H2O)n and Mg2+(H2O)n systems and the metal's second ionization potential. The extrapolated bulk VDEs of the localized surface electron, which moves away from the metal as n increases, are 1.89 ± 0.01 eV for semiempirical (n ∼ 3,200; PM6-D3H4) and 1.73 ± 0.03 eV (n ∼ 150; HF) and 1.83 ± 0.02 eV (n ∼ 150; MP2) for ab initio, in excellent agreement with the 1.6-1.8 eV range of experimental results. The VDEs converge from above (larger values) to the bulk limit, in a manner that is qualitatively opposite from previous studies and experiments lacking a charged metal, a fact justifying the "back door" approach to the solvated electron.
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Affiliation(s)
- Joani Mato
- Physical Sciences Division, Pacific Northwest National Laboratory, 902 Battelle Boulevard, P.O. Box 999, MS J7-10, Richland, Washington 99352, United States
| | - Soohaeng Yoo Willow
- Department of Energy Science, Sungkyunkwan University, Seobu-ro 2066, Suwon 16419, Republic of Korea
| | - Jasper C Werhahn
- Department of Physics E11, Technical University of Munich, James-Franck-Strasse, D-85748 Garching, Germany
| | - Sotiris S Xantheas
- Advanced Computing, Mathematics and Data Division, Pacific Northwest National Laboratory, 902 Battelle Boulevard, P.O. Box 999, MS J7-10, Richland, Washington 99352, United States
- Department of Chemistry, University of Washington, Seattle, Washington 98195, United States
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3
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Signorell R, Winter B. Photoionization of the aqueous phase: clusters, droplets and liquid jets. Phys Chem Chem Phys 2022; 24:13438-13460. [PMID: 35510623 PMCID: PMC9176186 DOI: 10.1039/d2cp00164k] [Citation(s) in RCA: 14] [Impact Index Per Article: 7.0] [Reference Citation Analysis] [Abstract] [Grants] [Track Full Text] [Figures] [Journal Information] [Subscribe] [Scholar Register] [Received: 01/11/2022] [Accepted: 04/11/2022] [Indexed: 12/03/2022]
Abstract
This perspective article reviews specific challenges associated with photoemission spectroscopy of bulk liquid water, aqueous solutions, water droplets and water clusters. The main focus lies on retrieving accurate energetics and photoelectron angular information from measured photoemission spectra, and on the question how these quantities differ in different aqueous environments. Measured photoelectron band shapes, vertical binding energies (ionization energies), and photoelectron angular distributions are influenced by various phenomena. We discuss the influences of multiple energy-dependent electron scattering in aqueous environments, and we discuss different energy referencing methods, including the application of a bias voltage to access absolute energetics of solvent and solute. Recommendations how to account for or minimize the influence of electron scattering are provided. The example of the hydrated electron in different aqueous environments illustrates how one can account for electron scattering, while reliable methods addressing parasitic potentials and proper energy referencing are demonstrated for ionization from the outermost valence orbital of neat liquid water.
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Affiliation(s)
- Ruth Signorell
- Department of Chemistry and Applied Biosciences, ETH Zürich, Vladimir-Prelog-Weg 2, 8093 Zürich, Switzerland.
| | - Bernd Winter
- Molecular Physics Department, Fritz-Haber-Institute der Max-Planck-Gesellschaft, Faradayweg 4-6, 14196 Berlin, Germany.
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4
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Koga M, Asplund M, Neumark DM. Electron attachment dynamics following UV excitation of iodide-2-thiouracil complexes. J Chem Phys 2022; 156:244302. [DOI: 10.1063/5.0098280] [Citation(s) in RCA: 1] [Impact Index Per Article: 0.5] [Reference Citation Analysis] [Abstract] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Indexed: 11/14/2022] Open
Abstract
The dynamics of low energy electron attachment to the thio-substituted uracil analog 2-thiouracil are investigated using time-resolved photoelectron spectroscopy (TRPES) of iodide·2-thiouracil (I -·2TU) binary clusters. In these experiments, the anions are excited at pump energies of 4.16 and 4.73 eV, and the ensuing dynamics are probed by photodetachment at 1.59 and 3.18 eV. Upon excitation near the vertical detachment energy (4.16 eV), dipole bound (DB) and valence bound (VB) anion signals appear almost instantaneously, and the DB state of the 2TU anion undergoes ultrafast decay (~50 fs). At 4.73 eV, there is no evidence for a DB state, but features attributed to two VB states are seen. The transient negative ions formed by photoexcitation decay by autodetachment and I- fragmentation. The I- dissociation rates and their dependence on excitation energy agree reasonably well with the Rice-Ramsperger-Kassel-Marcus calculations. Notable differences with respect to TRPES of the related iodide-uracil anion are observed and discussed.
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Affiliation(s)
- Masafumi Koga
- University of California Berkeley Department of Chemistry, United States of America
| | - Megan Asplund
- University of California Berkeley Department of Chemistry, United States of America
| | - Daniel M. Neumark
- Department of Chemistry, University of California Berkeley Department of Chemistry, United States of America
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5
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Abstract
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Cluster-size-resolved
ultrafast dynamics of the solvated electron
in neutral water clusters with n = 3 to ∼200
molecules are studied with pump–probe time-of-flight mass spectrometry
after below band gap excitation. For the smallest clusters, no longer-lived
(>100–200 fs) hydrated electrons were detected, indicating
a minimum size of n ∼ 14 for being able to
sustain hydrated electrons. Larger clusters show a systematic increase
of the number of hydrated electrons per molecule on the femtosecond
to picosecond time scale. We propose that with increasing cluster
size the underlying dynamics is governed by more effective electron
formation processes combined with less effective electron loss processes,
such as ultrafast hydrogen ejection and recombination. It appears
unlikely that any size dependence of the solvent relaxation dynamics
would be reflected in the observed time-resolved ion yields.
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Affiliation(s)
- Loren Ban
- Department of Chemistry and Applied Biosciences, ETH Zurich, Vladimir-Prelog-Weg 2, CH-8093 Zurich, Switzerland
| | - Bruce L Yoder
- Department of Chemistry and Applied Biosciences, ETH Zurich, Vladimir-Prelog-Weg 2, CH-8093 Zurich, Switzerland
| | - Ruth Signorell
- Department of Chemistry and Applied Biosciences, ETH Zurich, Vladimir-Prelog-Weg 2, CH-8093 Zurich, Switzerland
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6
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Ban L, West CW, Chasovskikh E, Gartmann TE, Yoder BL, Signorell R. Below Band Gap Formation of Solvated Electrons in Neutral Water Clusters? J Phys Chem A 2020; 124:7959-7965. [PMID: 32878434 PMCID: PMC7536715 DOI: 10.1021/acs.jpca.0c06935] [Citation(s) in RCA: 5] [Impact Index Per Article: 1.3] [Reference Citation Analysis] [Abstract] [Track Full Text] [Download PDF] [Figures] [Journal Information] [Subscribe] [Scholar Register] [Received: 07/29/2020] [Revised: 09/01/2020] [Indexed: 01/25/2023]
Abstract
Below band gap formation of solvated electrons in neutral water clusters using pump-probe photoelectron imaging is compared with recent data for liquid water and with above band gap excitation studies in liquid and clusters. Similar relaxation times on the order of 200 fs and 1-2 ps are retrieved for below and above band gap excitation, in both clusters and liquid. The independence of the relaxation times from the generation process indicates that these times are dominated by the solvent response, which is significantly slower than the various solvated electron formation processes. The analysis of the temporal evolution of the vertical electron binding energy and the electron binding energy at half-maximum suggests a dependence of the solvation time on the binding energy.
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Affiliation(s)
- Loren Ban
- ETH Zurich, Department of Chemistry
and Applied Biosciences, Vladimir-Prelog-Weg 2, CH-8093 Zurich, Switzerland
| | - Christopher W. West
- ETH Zurich, Department of Chemistry
and Applied Biosciences, Vladimir-Prelog-Weg 2, CH-8093 Zurich, Switzerland
| | - Egor Chasovskikh
- ETH Zurich, Department of Chemistry
and Applied Biosciences, Vladimir-Prelog-Weg 2, CH-8093 Zurich, Switzerland
| | - Thomas E. Gartmann
- ETH Zurich, Department of Chemistry
and Applied Biosciences, Vladimir-Prelog-Weg 2, CH-8093 Zurich, Switzerland
| | - Bruce L. Yoder
- ETH Zurich, Department of Chemistry
and Applied Biosciences, Vladimir-Prelog-Weg 2, CH-8093 Zurich, Switzerland
| | - Ruth Signorell
- ETH Zurich, Department of Chemistry
and Applied Biosciences, Vladimir-Prelog-Weg 2, CH-8093 Zurich, Switzerland
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7
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Ghorai S, Naskar P, Chaudhury P. An investigation on the structure, spectroscopy, and thermodynamic aspects of clusters: A combined Parallel tempering and
DFT
based study. INTERNATIONAL JOURNAL OF QUANTUM CHEMISTRY 2020; 120. [DOI: 10.1002/qua.26270] [Citation(s) in RCA: 1] [Impact Index Per Article: 0.3] [Reference Citation Analysis] [Track Full Text] [Subscribe] [Scholar Register] [Received: 12/19/2019] [Accepted: 04/21/2020] [Indexed: 07/19/2023]
Affiliation(s)
- Sankar Ghorai
- Department of ChemistryUniversity of Calcutta Kolkata India
| | - Pulak Naskar
- Department of ChemistryUniversity of Calcutta Kolkata India
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8
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Kunin A, McGraw VS, Lunny KG, Neumark DM. Time-resolved dynamics in iodide-uracil-water clusters upon excitation of the nucleobase. J Chem Phys 2019; 151:154304. [PMID: 31640364 DOI: 10.1063/1.5120706] [Citation(s) in RCA: 10] [Impact Index Per Article: 2.0] [Reference Citation Analysis] [Abstract] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Indexed: 11/14/2022] Open
Abstract
The dynamics of iodide-uracil-water (I-·U·H2O) clusters following π-π* excitation of the nucleobase are probed using time-resolved photoelectron spectroscopy. Photoexcitation of this cluster at 4.77 eV results in electron transfer from the iodide moiety to the uracil, creating a valence-bound anion within the cross correlation of the pump and probe laser pulses. This species can decay by a number of channels, including autodetachment and dissociation to I- or larger anion fragments. Comparison of the energetics of the photoexcited cluster and its decay dynamics with those of the bare iodide-uracil (I-·U) complex provides a sensitive probe of the effects of microhydration on these species.
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Affiliation(s)
- Alice Kunin
- Department of Chemistry, University of California, Berkeley, California 94720, USA
| | - Valerie S McGraw
- Department of Chemistry, University of California, Berkeley, California 94720, USA
| | - Katharine G Lunny
- Department of Chemistry, University of California, Berkeley, California 94720, USA
| | - Daniel M Neumark
- Department of Chemistry, University of California, Berkeley, California 94720, USA
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9
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Herburger A, Barwa E, Ončák M, Heller J, van der Linde C, Neumark DM, Beyer MK. Probing the Structural Evolution of the Hydrated Electron in Water Cluster Anions (H 2O) n-, n ≤ 200, by Electronic Absorption Spectroscopy. J Am Chem Soc 2019; 141:18000-18003. [PMID: 31651160 PMCID: PMC6856957 DOI: 10.1021/jacs.9b10347] [Citation(s) in RCA: 16] [Impact Index Per Article: 3.2] [Reference Citation Analysis] [Abstract] [Track Full Text] [Download PDF] [Figures] [Journal Information] [Subscribe] [Scholar Register] [Indexed: 11/28/2022]
Abstract
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Electronic
absorption spectra of water cluster anions (H2O)n–, n ≤
200, at T = 80 K are obtained by photodissociation
spectroscopy and compared with simulations from literature and experimental
data for bulk hydrated electrons. Two almost isoenergetic electron
binding motifs are seen for cluster sizes 20 ≤ n ≤ 40, which are assigned to surface and partially embedded
isomers. With increasing cluster size, the surface isomer becomes
less populated, and for n ≥ 50, the partially
embedded isomer prevails. The absorption shifts to the blue, reaching
a plateau at n ≈ 100. In this size range,
the absorption spectrum is similar to that of the bulk hydrated electron
but is slightly red-shifted; spectral moment analysis indicates that
these clusters are reasonable model systems for hydrated electrons
near the liquid–vacuum interface.
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Affiliation(s)
- Andreas Herburger
- Institut für Ionenphysik und Angewandte Physik , Universität Innsbruck , Technikerstraße 25 , 6020 Innsbruck , Austria
| | - Erik Barwa
- Institut für Ionenphysik und Angewandte Physik , Universität Innsbruck , Technikerstraße 25 , 6020 Innsbruck , Austria
| | - Milan Ončák
- Institut für Ionenphysik und Angewandte Physik , Universität Innsbruck , Technikerstraße 25 , 6020 Innsbruck , Austria
| | - Jakob Heller
- Institut für Ionenphysik und Angewandte Physik , Universität Innsbruck , Technikerstraße 25 , 6020 Innsbruck , Austria
| | - Christian van der Linde
- Institut für Ionenphysik und Angewandte Physik , Universität Innsbruck , Technikerstraße 25 , 6020 Innsbruck , Austria
| | - Daniel M Neumark
- Department of Chemistry , University of California , Berkeley , California 94720 , United States.,Chemical Sciences Division , Lawrence Berkeley National Laboratory , Berkeley , California 94720 , United States
| | - Martin K Beyer
- Institut für Ionenphysik und Angewandte Physik , Universität Innsbruck , Technikerstraße 25 , 6020 Innsbruck , Austria
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10
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Gartmann T, Ban L, Yoder BL, Hartweg S, Chasovskikh E, Signorell R. Relaxation Dynamics and Genuine Properties of the Solvated Electron in Neutral Water Clusters. J Phys Chem Lett 2019; 10:4777-4782. [PMID: 31382737 PMCID: PMC6734797 DOI: 10.1021/acs.jpclett.9b01802] [Citation(s) in RCA: 18] [Impact Index Per Article: 3.6] [Reference Citation Analysis] [Abstract] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Received: 06/21/2019] [Accepted: 08/05/2019] [Indexed: 05/27/2023]
Abstract
We have investigated the solvation dynamics and the genuine binding energy and photoemission anisotropy of the solvated electron in neutral water clusters with a combination of time-resolved photoelectron velocity map imaging and electron scattering simulations. The dynamics was probed with a UV probe pulse following above-band-gap excitation by an EUV pump pulse. The solvation dynamics is completed within about 2 ps. Only a single band is observed in the spectra, with no indication for isomers with distinct binding energies. Data analysis with an electron scattering model reveals a genuine binding energy in the range of 3.55-3.85 eV and a genuine anisotropy parameter in the range of 0.51-0.66 for the ground-state hydrated electron. All of these observations coincide with those for liquid bulk, which is rather unexpected for an average cluster size of 300 molecules.
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11
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Zeng HJ, Yang N, Johnson MA. Introductory lecture: advances in ion spectroscopy: from astrophysics to biology. Faraday Discuss 2019; 217:8-33. [PMID: 31094388 DOI: 10.1039/c9fd00030e] [Citation(s) in RCA: 13] [Impact Index Per Article: 2.6] [Reference Citation Analysis] [Abstract] [MESH Headings] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Indexed: 12/23/2022]
Abstract
This introduction provides a historical context for the development of ion spectroscopy over the past half century by following the evolution of experimental methods to the present state-of-the-art. Rather than attempt a comprehensive review, we focus on how early work on small ions, carried out with fluorescence, direct absorption, and photoelectron spectroscopy, evolved into powerful technologies that can now address complex chemical problems ranging from catalysis to biophysics. One of these developments is the incorporation of cooling and temperature control to enable the general application of "messenger tagging" vibrational spectroscopy, first carried out using ionized supersonic jets and then with buffer gas cooling in radiofrequency ion traps. Some key advances in the application of time-resolved pump-probe techniques to follow ultrafast dynamics are also discussed, as are significant benchmarks in the refinement of ion mobility to allow spectroscopic investigation of large biopolymers with well-defined shapes. We close with a few remarks on challenges and opportunities to explore molecular level mechanics that drive macroscopic behavior.
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Affiliation(s)
- Helen J Zeng
- Sterling Chemistry Laboratory, Yale University, New Haven, CT 06520, USA.
| | - Nan Yang
- Sterling Chemistry Laboratory, Yale University, New Haven, CT 06520, USA.
| | - Mark A Johnson
- Sterling Chemistry Laboratory, Yale University, New Haven, CT 06520, USA.
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12
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Kunin A, Neumark DM. Time-resolved radiation chemistry: femtosecond photoelectron spectroscopy of electron attachment and photodissociation dynamics in iodide-nucleobase clusters. Phys Chem Chem Phys 2019; 21:7239-7255. [PMID: 30855623 DOI: 10.1039/c8cp07831a] [Citation(s) in RCA: 42] [Impact Index Per Article: 8.4] [Reference Citation Analysis] [Abstract] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Indexed: 01/02/2023]
Abstract
Iodide-nucleobase (I-·N) clusters studied by time-resolved photoelectron spectroscopy (TRPES) are an opportune model system for examining radiative damage of DNA induced by low-energy electrons. By initiating charge transfer from iodide to the nucleobase and following the dynamics of the resulting transient negative ions (TNIs) with femtosecond time resolution, TRPES provides a novel window into the chemistry triggered by the attachment of low-energy electrons to nucleobases. In this Perspective, we examine and compare the dynamics of electron attachment, autodetachment, and photodissociation in a variety of I-·N clusters, including iodide-uracil (I-·U), iodide-thymine (I-·T), iodide-uracil-water (I-·U·H2O), and iodide-adenine (I-·A), to develop a more unified representation of our understanding of nucleobase TNIs. The experiments probe whether dipole-bound or valence-bound TNIs are formed initially and the subsequent time evolution of these species. We also provide an outlook for forthcoming applications of TRPES to larger iodide-containing complexes to enable the further investigation of microhydration dynamics in nucleobases, as well as electron attachment and photodissociation in more complex nucleic acid constituents.
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Affiliation(s)
- Alice Kunin
- Department of Chemistry, University of California, Berkeley, California 94720, USA.
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13
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Albeck Y, Lunny KG, Benitez Y, Shin AJ, Strasser D, Continetti RE. Resonance‐Mediated Below‐Threshold Delayed Photoemission and Non‐Franck–Condon Photodissociation of Cold Oxyallyl Anions. Angew Chem Int Ed Engl 2019. [DOI: 10.1002/ange.201900386] [Citation(s) in RCA: 2] [Impact Index Per Article: 0.4] [Reference Citation Analysis] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Indexed: 11/11/2022]
Affiliation(s)
- Yishai Albeck
- Institute of Chemistry The Hebrew University of Jerusalem 91904 Jerusalem Israel
| | - Katharine G. Lunny
- Department of Chemistry and Biochemistry University of California San Diego 9500 Gilman Drive La Jolla CA 92093-0340 USA
| | - Yanice Benitez
- Department of Chemistry and Biochemistry University of California San Diego 9500 Gilman Drive La Jolla CA 92093-0340 USA
| | - Ashley J. Shin
- Department of Chemistry and Biochemistry University of California San Diego 9500 Gilman Drive La Jolla CA 92093-0340 USA
| | - Daniel Strasser
- Institute of Chemistry The Hebrew University of Jerusalem 91904 Jerusalem Israel
| | - Robert E. Continetti
- Department of Chemistry and Biochemistry University of California San Diego 9500 Gilman Drive La Jolla CA 92093-0340 USA
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14
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Albeck Y, Lunny KG, Benitez Y, Shin AJ, Strasser D, Continetti RE. Resonance‐Mediated Below‐Threshold Delayed Photoemission and Non‐Franck–Condon Photodissociation of Cold Oxyallyl Anions. Angew Chem Int Ed Engl 2019; 58:5312-5315. [DOI: 10.1002/anie.201900386] [Citation(s) in RCA: 2] [Impact Index Per Article: 0.4] [Reference Citation Analysis] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Received: 01/10/2019] [Indexed: 11/11/2022]
Affiliation(s)
- Yishai Albeck
- Institute of Chemistry The Hebrew University of Jerusalem 91904 Jerusalem Israel
| | - Katharine G. Lunny
- Department of Chemistry and Biochemistry University of California San Diego 9500 Gilman Drive La Jolla CA 92093-0340 USA
| | - Yanice Benitez
- Department of Chemistry and Biochemistry University of California San Diego 9500 Gilman Drive La Jolla CA 92093-0340 USA
| | - Ashley J. Shin
- Department of Chemistry and Biochemistry University of California San Diego 9500 Gilman Drive La Jolla CA 92093-0340 USA
| | - Daniel Strasser
- Institute of Chemistry The Hebrew University of Jerusalem 91904 Jerusalem Israel
| | - Robert E. Continetti
- Department of Chemistry and Biochemistry University of California San Diego 9500 Gilman Drive La Jolla CA 92093-0340 USA
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15
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Abstract
A cavity or excluded-volume structure best explains the experimental properties of the aqueous or “hydrated” electron.
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Affiliation(s)
- John M. Herbert
- Department of Chemistry & Biochemistry
- The Ohio State University
- Columbus
- USA
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16
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Sun CQ. Aqueous charge injection: solvation bonding dynamics, molecular nonbond interactions, and extraordinary solute capabilities. INT REV PHYS CHEM 2018. [DOI: 10.1080/0144235x.2018.1544446] [Citation(s) in RCA: 16] [Impact Index Per Article: 2.7] [Reference Citation Analysis] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Indexed: 12/26/2022]
Affiliation(s)
- Chang Q. Sun
- EBEAM, Yangtze Normal University, Chongqing, People's Republic of China
- NOVITAS, EEE, Nanyang Technological University, Singapore, Singapore
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17
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Kunin A, Li WL, Neumark DM. Dynamics of electron attachment and photodissociation in iodide-uracil-water clusters via time-resolved photoelectron imaging. J Chem Phys 2018; 149:084301. [PMID: 30193511 DOI: 10.1063/1.5040673] [Citation(s) in RCA: 14] [Impact Index Per Article: 2.3] [Reference Citation Analysis] [Abstract] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Indexed: 01/12/2023] Open
Abstract
The dynamics of low energy electron attachment to monohydrated uracil are investigated using time-resolved photoelectron imaging to excite and probe iodide-uracil-water (I-·U·H2O) clusters. Upon photoexcitation of I-·U·H2O at 4.38 eV, near the measured cluster vertical detachment energy of 4.40 eV ± 0.05 eV, formation of both the dipole bound (DB) anion and valence bound (VB) anion of I-·U·H2O is observed and characterized using a probe photon energy of 1.58 eV. The measured binding energies for both anions are larger than those of the non-hydrated iodide-uracil (I-·U) counterparts, indicating that the presence of water stabilizes the transient negative ions. The VB anion exhibits a somewhat delayed 400 fs rise when compared to I-·U, suggesting that partial conversion of the DB anion to form the VB anion at early times is promoted by the water molecule. At a higher probe photon energy, 3.14 eV, I- re-formation is measured to be the major photodissociation channel. This product exhibits a bi-exponential rise; it is likely that the fast component arises from DB anion decay by internal conversion to the anion ground state followed by dissociation to I-, and the slow component arises from internal conversion of the VB anion.
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Affiliation(s)
- Alice Kunin
- Department of Chemistry, University of California, Berkeley, California 94720, USA
| | - Wei-Li Li
- Department of Chemistry, University of California, Berkeley, California 94720, USA
| | - Daniel M Neumark
- Department of Chemistry, University of California, Berkeley, California 94720, USA
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18
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Choi TH, Vazhappilly T, Jordan KD. Implementation of analytical gradients and of a mixed real and momentum space DVR method for excess electron systems described by a self-consistent polarization model. J Chem Phys 2017; 147:161717. [DOI: 10.1063/1.4990396] [Citation(s) in RCA: 2] [Impact Index Per Article: 0.3] [Reference Citation Analysis] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Indexed: 12/22/2022] Open
Affiliation(s)
- Tae Hoon Choi
- Department of Chemistry, University of Pittsburgh, Pittsburgh, Pennsylvania 15260, USA
| | - Tijo Vazhappilly
- Theoretical Chemistry Section, Bhabha Atomic Research Centre, Mumbai, 400085, India
| | - Kenneth D. Jordan
- Department of Chemistry, University of Pittsburgh, Pittsburgh, Pennsylvania 15260, USA
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19
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Lifetimes and energetics of the first electronically excited states of NaH2O from time-resolved photoelectron imaging. Chem Phys Lett 2017. [DOI: 10.1016/j.cplett.2017.01.044] [Citation(s) in RCA: 4] [Impact Index Per Article: 0.6] [Reference Citation Analysis] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Indexed: 11/30/2022]
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20
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Farr EP, Zho CC, Challa JR, Schwartz BJ. Temperature dependence of the hydrated electron’s excited-state relaxation. II. Elucidating the relaxation mechanism through ultrafast transient absorption and stimulated emission spectroscopy. J Chem Phys 2017; 147:074504. [DOI: 10.1063/1.4985906] [Citation(s) in RCA: 11] [Impact Index Per Article: 1.6] [Reference Citation Analysis] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Indexed: 12/15/2022] Open
Affiliation(s)
- Erik P. Farr
- Department of Chemistry and Biochemistry, University of California, Los Angeles, California 90095-1569, USA
| | - Chen-Chen Zho
- Department of Chemistry and Biochemistry, University of California, Los Angeles, California 90095-1569, USA
| | - Jagannadha R. Challa
- Department of Chemistry and Biochemistry, University of California, Los Angeles, California 90095-1569, USA
| | - Benjamin J. Schwartz
- Department of Chemistry and Biochemistry, University of California, Los Angeles, California 90095-1569, USA
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21
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Luckhaus D, Yamamoto YI, Suzuki T, Signorell R. Genuine binding energy of the hydrated electron. SCIENCE ADVANCES 2017; 3:e1603224. [PMID: 28508051 PMCID: PMC5409453 DOI: 10.1126/sciadv.1603224] [Citation(s) in RCA: 89] [Impact Index Per Article: 12.7] [Reference Citation Analysis] [Abstract] [Key Words] [Grants] [Track Full Text] [Subscribe] [Scholar Register] [Received: 12/19/2016] [Accepted: 03/02/2017] [Indexed: 05/24/2023]
Abstract
The unknown influence of inelastic and elastic scattering of slow electrons in water has made it difficult to clarify the role of the solvated electron in radiation chemistry and biology. We combine accurate scattering simulations with experimental photoemission spectroscopy of the hydrated electron in a liquid water microjet, with the aim of resolving ambiguities regarding the influence of electron scattering on binding energy spectra, photoelectron angular distributions, and probing depths. The scattering parameters used in the simulations are retrieved from independent photoemission experiments of water droplets. For the ground-state hydrated electron, we report genuine values devoid of scattering contributions for the vertical binding energy and the anisotropy parameter of 3.7 ± 0.1 eV and 0.6 ± 0.2, respectively. Our probing depths suggest that even vacuum ultraviolet probing is not particularly surface-selective. Our work demonstrates the importance of quantitative scattering simulations for a detailed analysis of key properties of the hydrated electron.
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Affiliation(s)
- David Luckhaus
- Laboratory of Physical Chemistry, Department of Chemistry and Applied Biosciences, ETH Zürich, Vladimir-Prelog-Weg 2, CH-8093 Zürich, Switzerland
| | - Yo-ichi Yamamoto
- Department of Chemistry, Graduate School of Science, Kyoto University, Kitashirakawa-Oiwake-cho, Sakyo-Ku, Kyoto 606-8502, Japan
| | - Toshinori Suzuki
- Department of Chemistry, Graduate School of Science, Kyoto University, Kitashirakawa-Oiwake-cho, Sakyo-Ku, Kyoto 606-8502, Japan
| | - Ruth Signorell
- Laboratory of Physical Chemistry, Department of Chemistry and Applied Biosciences, ETH Zürich, Vladimir-Prelog-Weg 2, CH-8093 Zürich, Switzerland
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22
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Heiles S, Cooper RJ, DiTucci MJ, Williams ER. Sequential water molecule binding enthalpies for aqueous nanodrops containing a mono-, di- or trivalent ion and between 20 and 500 water molecules. Chem Sci 2017; 8:2973-2982. [PMID: 28451364 PMCID: PMC5380113 DOI: 10.1039/c6sc04957e] [Citation(s) in RCA: 12] [Impact Index Per Article: 1.7] [Reference Citation Analysis] [Abstract] [Track Full Text] [Download PDF] [Figures] [Journal Information] [Subscribe] [Scholar Register] [Received: 11/09/2016] [Accepted: 01/26/2017] [Indexed: 12/16/2022] Open
Abstract
Sequential water molecule binding enthalpies, ΔHn,n-1, are important for a detailed understanding of competitive interactions between ions, water and solute molecules, and how these interactions affect physical properties of ion-containing nanodrops that are important in aerosol chemistry. Water molecule binding enthalpies have been measured for small clusters of many different ions, but these values for ion-containing nanodrops containing more than 20 water molecules are scarce. Here, ΔHn,n-1 values are deduced from high-precision ultraviolet photodissociation (UVPD) measurements as a function of ion identity, charge state and cluster size between 20-500 water molecules and for ions with +1, +2 and +3 charges. The ΔHn,n-1 values are obtained from the number of water molecules lost upon photoexcitation at a known wavelength, and modeling of the release of energy into the translational, rotational and vibrational motions of the products. The ΔHn,n-1 values range from 36.82 to 50.21 kJ mol-1. For clusters containing more than ∼250 water molecules, the binding enthalpies are between the bulk heat of vaporization (44.8 kJ mol-1) and the sublimation enthalpy of bulk ice (51.0 kJ mol-1). These values depend on ion charge state for clusters with fewer than 150 water molecules, but there is a negligible dependence at larger size. There is a minimum in the ΔHn,n-1 values that depends on the cluster size and ion charge state, which can be attributed to the competing effects of ion solvation and surface energy. The experimental ΔHn,n-1 values can be fit to the Thomson liquid drop model (TLDM) using bulk ice parameters. By optimizing the surface tension and temperature change of the logarithmic partial pressure for the TLDM, the experimental sequential water molecule binding enthalpies can be fit with an accuracy of ±3.3 kJ mol-1 over the entire range of cluster sizes.
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Affiliation(s)
- Sven Heiles
- Department of Chemistry , University of California , Berkeley B42 Hildebrand Hall , Berkeley , California 94720-1460 , USA . ; Tel: +1-510-643-7161
| | - Richard J Cooper
- Department of Chemistry , University of California , Berkeley B42 Hildebrand Hall , Berkeley , California 94720-1460 , USA . ; Tel: +1-510-643-7161
| | - Matthew J DiTucci
- Department of Chemistry , University of California , Berkeley B42 Hildebrand Hall , Berkeley , California 94720-1460 , USA . ; Tel: +1-510-643-7161
| | - Evan R Williams
- Department of Chemistry , University of California , Berkeley B42 Hildebrand Hall , Berkeley , California 94720-1460 , USA . ; Tel: +1-510-643-7161
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23
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Li WL, Kunin A, Matthews E, Yoshikawa N, Dessent CEH, Neumark DM. Photodissociation dynamics of the iodide-uracil (I(-)U) complex. J Chem Phys 2017; 145:044319. [PMID: 27475373 DOI: 10.1063/1.4959858] [Citation(s) in RCA: 25] [Impact Index Per Article: 3.6] [Reference Citation Analysis] [Abstract] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Indexed: 01/30/2023] Open
Abstract
Photofragment action spectroscopy and femtosecond time-resolved photoelectron imaging are utilized to probe the dissociation channels in iodide-uracil (I(-) ⋅ U) binary clusters upon photoexcitation. The photofragment action spectra show strong I(-) and weak [U-H](-) ion signal upon photoexcitation. The action spectra show two bands for I(-) and [U-H](-) production peaking around 4.0 and 4.8 eV. Time-resolved experiments measured the rate of I(-) production resulting from excitation of the two bands. At 4.03 eV and 4.72 eV, the photoelectron signal from I(-) exhibits rise times of 86 ± 7 ps and 36 ± 3 ps, respectively. Electronic structure calculations indicate that the lower energy band, which encompasses the vertical detachment energy (4.11 eV) of I(-)U, corresponds to excitation of a dipole-bound state of the complex, while the higher energy band is primarily a π-π(∗) excitation on the uracil moiety. Although the nature of the two excited states is very different, the long lifetimes for I(-) production suggest that this channel results from internal conversion to the I(-) ⋅ U ground state followed by evaporation of I(-). This hypothesis was tested by comparing the dissociation rates to Rice-Ramsperger-Kassel-Marcus calculations.
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Affiliation(s)
- Wei-Li Li
- Department of Chemistry, University of California, Berkeley, California 94720, USA
| | - Alice Kunin
- Department of Chemistry, University of California, Berkeley, California 94720, USA
| | - Edward Matthews
- Department of Chemistry, University of York, Heslington, York YO10 5DD, United Kingdom
| | - Naruo Yoshikawa
- Department of Chemistry, University of York, Heslington, York YO10 5DD, United Kingdom
| | - Caroline E H Dessent
- Department of Chemistry, University of York, Heslington, York YO10 5DD, United Kingdom
| | - Daniel M Neumark
- Department of Chemistry, University of California, Berkeley, California 94720, USA
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24
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Zhang C, Bu Y. Efficient floating diffuse functions for accurate characterization of the surface-bound excess electrons in water cluster anions. Phys Chem Chem Phys 2017; 19:2816-2825. [PMID: 28067363 DOI: 10.1039/c6cp07628a] [Citation(s) in RCA: 3] [Impact Index Per Article: 0.4] [Reference Citation Analysis] [Abstract] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Indexed: 11/21/2022]
Abstract
In this work, the effect of diffuse function types (atom-centered diffuse functions versus floating functions and s-type versus p-type diffuse functions) on the structures and properties of three representative water cluster anions featuring a surface-bound excess electron is studied and we find that an effective combination of such two kinds of diffuse functions can not only reduce the computational cost but also, most importantly, considerably improve the accuracy of results and even avoid incorrect predictions of spectra and the EE shape. Our results indicate that (a) simple augmentation of atom-centered diffuse functions is beneficial for the vertical detachment energy convergence, but it leads to very poor descriptions for the singly occupied molecular orbital (SOMO) and lowest unoccupied molecular orbital (LUMO) distributions of the water cluster anions featuring a surface-bound excess electron and thus a significant ultraviolet spectrum redshift; (b) the ghost-atom-based floating diffuse functions can not only contribute to accurate electronic calculations of the ground state but also avoid poor and even incorrect descriptions of the SOMO and the LUMO induced by excessive augmentation of atom-centered diffuse functions; (c) the floating functions can be realized by ghost atoms and their positions could be determined through an optimization routine along the dipole moment vector direction. In addition, both the s- and p-type floating functions are necessary to supplement in the basis set which are responsible for the ground (s-type character) and excited (p-type character) states of the surface-bound excess electron, respectively. The exponents of the diffuse functions should also be determined to make the diffuse functions cover the main region of the excess electron distribution. Note that excessive augmentation of such diffuse functions is redundant and even can lead to unreasonable LUMO characteristics.
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Affiliation(s)
- Changzhe Zhang
- Institute of Theoretical Chemistry, School of Chemistry and Chemical Engineering, Shandong University, Jinan, 250100, People's Republic of China.
| | - Yuxiang Bu
- Institute of Theoretical Chemistry, School of Chemistry and Chemical Engineering, Shandong University, Jinan, 250100, People's Republic of China.
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25
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Coons MP, You ZQ, Herbert JM. The Hydrated Electron at the Surface of Neat Liquid Water Appears To Be Indistinguishable from the Bulk Species. J Am Chem Soc 2016; 138:10879-86. [DOI: 10.1021/jacs.6b06715] [Citation(s) in RCA: 48] [Impact Index Per Article: 6.0] [Reference Citation Analysis] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Indexed: 11/29/2022]
Affiliation(s)
- Marc P. Coons
- Department of Chemistry and
Biochemistry, The Ohio State University, Columbus, Ohio 43210, United States
| | - Zhi-Qiang You
- Department of Chemistry and
Biochemistry, The Ohio State University, Columbus, Ohio 43210, United States
| | - John M. Herbert
- Department of Chemistry and
Biochemistry, The Ohio State University, Columbus, Ohio 43210, United States
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26
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Zhang C, Bu Y. Benchmark calculations of excess electrons in water cluster cavities: balancing the addition of atom-centered diffuse functions versus floating diffuse functions. Phys Chem Chem Phys 2016; 18:23812-21. [PMID: 27522987 DOI: 10.1039/c6cp04224d] [Citation(s) in RCA: 3] [Impact Index Per Article: 0.4] [Reference Citation Analysis] [Abstract] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Indexed: 11/21/2022]
Abstract
Diffuse functions have been proved to be especially crucial for the accurate characterization of excess electrons which are usually bound weakly in intermolecular zones far away from the nuclei. To examine the effects of diffuse functions on the nature of the cavity-shaped excess electrons in water cluster surroundings, both the HOMO and LUMO distributions, vertical detachment energies (VDEs) and visible absorption spectra of two selected (H2O)24(-) isomers are investigated in the present work. Two main types of diffuse functions are considered in calculations including the Pople-style atom-centered diffuse functions and the ghost-atom-based floating diffuse functions. It is found that augmentation of atom-centered diffuse functions contributes to a better description of the HOMO (corresponding to the VDE convergence), in agreement with previous studies, but also leads to unreasonable diffuse characters of the LUMO with significant red-shifts in the visible spectra, which is against the conventional point of view that the more the diffuse functions, the better the results. The issue of designing extra floating functions for excess electrons has also been systematically discussed, which indicates that the floating diffuse functions are necessary not only for reducing the computational cost but also for improving both the HOMO and LUMO accuracy. Thus, the basis sets with a combination of partial atom-centered diffuse functions and floating diffuse functions are recommended for a reliable description of the weakly bound electrons. This work presents an efficient way for characterizing the electronic properties of weakly bound electrons accurately by balancing the addition of atom-centered diffuse functions and floating diffuse functions and also by balancing the computational cost and accuracy of the calculated results, and thus is very useful in the relevant calculations of various solvated electron systems and weakly bound anionic systems.
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Affiliation(s)
- Changzhe Zhang
- School of Chemistry and Chemical Engineering, Shandong University, Jinan, 250100, P. R. China.
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27
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Stephansen AB, King SB, Yokoi Y, Minoshima Y, Li WL, Kunin A, Takayanagi T, Neumark DM. Dynamics of dipole- and valence bound anions in iodide-adenine binary complexes: A time-resolved photoelectron imaging and quantum mechanical investigation. J Chem Phys 2016; 143:104308. [PMID: 26374036 DOI: 10.1063/1.4929995] [Citation(s) in RCA: 24] [Impact Index Per Article: 3.0] [Reference Citation Analysis] [Abstract] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Indexed: 01/22/2023] Open
Abstract
Dipole bound (DB) and valence bound (VB) anions of binary iodide-adenine complexes have been studied using one-color and time-resolved photoelectron imaging at excitation energies near the vertical detachment energy. The experiments are complemented by quantum chemical calculations. One-color spectra show evidence for two adenine tautomers, the canonical, biologically relevant A9 tautomer and the A3 tautomer. In the UV-pump/IR-probe time-resolved experiments, transient adenine anions can be formed by electron transfer from the iodide. These experiments show signals from both DB and VB states of adenine anions formed on femto- and picosecond time scales, respectively. Analysis of the spectra and comparison with calculations suggest that while both the A9 and A3 tautomers contribute to the DB signal, only the DB state of the A3 tautomer undergoes a transition to the VB anion. The VB anion of A9 is higher in energy than both the DB anion and the neutral, and the VB anion is therefore not accessible through the DB state. Experimental evidence of the metastable A9 VB anion is instead observed as a shape resonance in the one-color photoelectron spectra, as a result of UV absorption by A9 and subsequent electron transfer from iodide into the empty π-orbital. In contrast, the iodide-A3 complex constitutes an excellent example of how DB states can act as doorway state for VB anion formation when the VB state is energetically available.
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Affiliation(s)
- Anne B Stephansen
- Department of Chemistry, University of Copenhagen, Universitetsparken 5, DK-2100 København Ø, Denmark
| | - Sarah B King
- Department of Chemistry, University of California, Berkeley, California 94720, USA
| | - Yuki Yokoi
- Department of Chemistry, Saitama University, 255 Shimo-Okubo, Sakura-ku, Saitama City, Saitama 338-8570, Japan
| | - Yusuke Minoshima
- Department of Chemistry, Saitama University, 255 Shimo-Okubo, Sakura-ku, Saitama City, Saitama 338-8570, Japan
| | - Wei-Li Li
- Department of Chemistry, University of California, Berkeley, California 94720, USA
| | - Alice Kunin
- Department of Chemistry, University of California, Berkeley, California 94720, USA
| | - Toshiyuki Takayanagi
- Department of Chemistry, Saitama University, 255 Shimo-Okubo, Sakura-ku, Saitama City, Saitama 338-8570, Japan
| | - Daniel M Neumark
- Department of Chemistry, University of California, Berkeley, California 94720, USA
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28
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King SB, Stephansen AB, Yokoi Y, Yandell MA, Kunin A, Takayanagi T, Neumark DM. Electron accommodation dynamics in the DNA base thymine. J Chem Phys 2016; 143:024312. [PMID: 26178110 DOI: 10.1063/1.4923343] [Citation(s) in RCA: 21] [Impact Index Per Article: 2.6] [Reference Citation Analysis] [Abstract] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Indexed: 11/14/2022] Open
Abstract
The dynamics of electron attachment to the DNA base thymine are investigated using femtosecond time-resolved photoelectron imaging of the gas phase iodide-thymine (I(-)T) complex. An ultraviolet pump pulse ejects an electron from the iodide and prepares an iodine-thymine temporary negative ion that is photodetached with a near-IR probe pulse. The resulting photoelectrons are analyzed with velocity-map imaging. At excitation energies ranging from -120 meV to +90 meV with respect to the vertical detachment energy (VDE) of 4.05 eV for I(-)T, both the dipole-bound and valence-bound negative ions of thymine are observed. A slightly longer rise time for the valence-bound state than the dipole-bound state suggests that some of the dipole-bound anions convert to valence-bound species. No evidence is seen for a dipole-bound anion of thymine at higher excitation energies, in the range of 0.6 eV above the I(-)T VDE, which suggests that if the dipole-bound anion acts as a "doorway" to the valence-bound anion, it only does so at excitation energies near the VDE of the complex.
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Affiliation(s)
- Sarah B King
- Department of Chemistry, University of California, Berkeley, California 94720, USA
| | - Anne B Stephansen
- Department of Chemistry, University of Copenhagen, Universitetsparken 5, DK-2100 København Ø, Denmark
| | - Yuki Yokoi
- Department of Chemistry, Saitama University, 255 Shimo-Okubo, Sakura-ku, Saitama City, Saitama 338-8570, Japan
| | - Margaret A Yandell
- Department of Chemistry, University of California, Berkeley, California 94720, USA
| | - Alice Kunin
- Department of Chemistry, University of California, Berkeley, California 94720, USA
| | - Toshiyuki Takayanagi
- Department of Chemistry, Saitama University, 255 Shimo-Okubo, Sakura-ku, Saitama City, Saitama 338-8570, Japan
| | - Daniel M Neumark
- Department of Chemistry, University of California, Berkeley, California 94720, USA
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29
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Elkins MH, Williams HL, Neumark DM. Isotope effect on hydrated electron relaxation dynamics studied with time-resolved liquid jet photoelectron spectroscopy. J Chem Phys 2016; 144:184503. [DOI: 10.1063/1.4948546] [Citation(s) in RCA: 16] [Impact Index Per Article: 2.0] [Reference Citation Analysis] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Indexed: 11/14/2022] Open
Affiliation(s)
- Madeline H. Elkins
- Department of Chemistry, University of California, Berkeley, California 94720, USA
| | - Holly L. Williams
- Department of Chemistry, University of California, Berkeley, California 94720, USA
| | - Daniel M. Neumark
- Department of Chemistry, University of California, Berkeley, California 94720, USA
- Chemical Sciences Division, Lawrence Berkeley National Laboratory, Berkeley, California 94720, USA
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30
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DeBlase AF, Wolke CT, Weddle GH, Archer KA, Jordan KD, Kelly JT, Tschumper GS, Hammer NI, Johnson MA. Water network-mediated, electron-induced proton transfer in [C5H5N ⋅ (H2O)n](-) clusters. J Chem Phys 2016; 143:144305. [PMID: 26472377 DOI: 10.1063/1.4931928] [Citation(s) in RCA: 8] [Impact Index Per Article: 1.0] [Reference Citation Analysis] [Abstract] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Indexed: 11/14/2022] Open
Abstract
The role of proton-assisted charge accommodation in electron capture by a heterocyclic electron scavenger is investigated through theoretical analysis of the vibrational spectra of cold, gas phase [Py ⋅ (H2O)n=3-5](-) clusters. These radical anions are formed when an excess electron is attached to water clusters containing a single pyridine (Py) molecule in a supersonic jet ion source. Under these conditions, the cluster ion distribution starts promptly at n = 3, and the photoelectron spectra, combined with vibrational predissociation spectra of the Ar-tagged anions, establish that for n > 3, these species are best described as hydrated hydroxide ions with the neutral pyridinium radical, PyH((0)), occupying one of the primary solvation sites of the OH(-). The n = 3 cluster appears to be a special case where charge localization on Py and hydroxide is nearly isoenergetic, and the nature of this species is explored with ab initio molecular dynamics calculations of the trajectories that start from metastable arrangements of the anion based on a diffuse, essentially dipole-bound electron. These calculations indicate that the reaction proceeds via a relatively slow rearrangement of the water network to create a favorable hydration configuration around the water molecule that eventually donates a proton to the Py nitrogen atom to yield the product hydroxide ion. The correlation between the degree of excess charge localization and the evolving shape of the water network revealed by this approach thus provides a microscopic picture of the "solvent coordinate" at the heart of a prototypical proton-coupled electron transfer reaction.
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Affiliation(s)
- Andrew F DeBlase
- Department of Chemistry, Yale University, P.O. Box 208107, New Haven, Connecticut 06520, USA
| | - Conrad T Wolke
- Department of Chemistry, Yale University, P.O. Box 208107, New Haven, Connecticut 06520, USA
| | - Gary H Weddle
- Department of Chemistry, Yale University, P.O. Box 208107, New Haven, Connecticut 06520, USA
| | - Kaye A Archer
- Department of Chemistry, University of Pittsburgh, 219 Parkman Avenue, Pittsburgh, Pennsylvania 15260, USA
| | - Kenneth D Jordan
- Department of Chemistry, University of Pittsburgh, 219 Parkman Avenue, Pittsburgh, Pennsylvania 15260, USA
| | - John T Kelly
- Department of Chemistry and Biochemistry, University of Mississippi, University, Mississippi 38677, USA
| | - Gregory S Tschumper
- Department of Chemistry and Biochemistry, University of Mississippi, University, Mississippi 38677, USA
| | - Nathan I Hammer
- Department of Chemistry and Biochemistry, University of Mississippi, University, Mississippi 38677, USA
| | - Mark A Johnson
- Department of Chemistry, Yale University, P.O. Box 208107, New Haven, Connecticut 06520, USA
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31
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Kunin A, Li WL, Neumark DM. Time-resolved photoelectron imaging of iodide–nitromethane (I−·CH3NO2) photodissociation dynamics. Phys Chem Chem Phys 2016; 18:33226-33232. [DOI: 10.1039/c6cp06646a] [Citation(s) in RCA: 11] [Impact Index Per Article: 1.4] [Reference Citation Analysis] [Abstract] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Indexed: 11/21/2022]
Abstract
Dissociation to reform iodide was found to be non-statistical and is predicted to be limited by intramolecular vibrational energy redistribution.
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Affiliation(s)
- Alice Kunin
- Department of Chemistry
- University of California
- Berkeley
- USA
| | - Wei-Li Li
- Department of Chemistry
- University of California
- Berkeley
- USA
| | - Daniel M. Neumark
- Department of Chemistry
- University of California
- Berkeley
- USA
- Chemical Sciences Division
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32
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King SB, Yandell MA, Stephansen AB, Neumark DM. Time-resolved radiation chemistry: dynamics of electron attachment to uracil following UV excitation of iodide-uracil complexes. J Chem Phys 2015; 141:224310. [PMID: 25494752 DOI: 10.1063/1.4903197] [Citation(s) in RCA: 27] [Impact Index Per Article: 3.0] [Reference Citation Analysis] [Abstract] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Indexed: 02/02/2023] Open
Abstract
Electron attachment to uracil was investigated by applying time-resolved photoelectron imaging to iodide-uracil (I(-)U) complexes. In these studies, an ultraviolet pump pulse initiated charge transfer from the iodide to the uracil, and the resulting dynamics of the uracil temporary negative ion were probed. Five different excitation energies were used, 4.00 eV, 4.07 eV, 4.14 eV, 4.21 eV, and 4.66 eV. At the four lowest excitation energies, which lie near the vertical detachment energy of the I(-)U complex (4.11 eV), signatures of both the dipole bound (DB) as well as the valence bound (VB) anion of uracil were observed. In contrast, only the VB anion was observed at 4.66 eV, in agreement with previous experiments in this higher energy range. The early-time dynamics of both states were highly excitation energy dependent. The rise time of the DB anion signal was ∼250 fs at 4.00 eV and 4.07 eV, ∼120 fs at 4.14 eV and cross-correlation limited at 4.21 eV. The VB anion rise time also changed with excitation energy, ranging from 200 to 300 fs for excitation energies 4.00-4.21 eV, to a cross-correlation limited time at 4.66 eV. The results suggest that the DB state acts as a "doorway" state to the VB anion at 4.00-4.21 eV, while direct attachment to the VB anion occurs at 4.66 eV.
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Affiliation(s)
- Sarah B King
- Department of Chemistry, University of California, Berkeley, California 94720, USA
| | - Margaret A Yandell
- Department of Chemistry, University of California, Berkeley, California 94720, USA
| | - Anne B Stephansen
- Department of Chemistry, University of Copenhagen, Universitetsparken 5, DK-2100 København Ø, Denmark
| | - Daniel M Neumark
- Department of Chemistry, University of California, Berkeley, California 94720, USA
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33
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Liu J, Cukier RI, Bu Y, Shang Y. Glucose-Promoted Localization Dynamics of Excess Electrons in Aqueous Glucose Solution Revealed by Ab Initio Molecular Dynamics Simulation. J Chem Theory Comput 2014; 10:4189-97. [PMID: 26588118 DOI: 10.1021/ct500238k] [Citation(s) in RCA: 8] [Impact Index Per Article: 0.8] [Reference Citation Analysis] [Abstract] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Indexed: 12/29/2022]
Abstract
Ab initio molecular dynamics simulations reveal that an excess electron (EE) can be more efficiently localized as a cavity-shaped state in aqueous glucose solution (AGS) than in water. Compared with that (∼1.5 ps) in water, the localization time is shortened by ∼0.7-1.2 ps in three AGSs (0.56, 1.12, and 2.87 M). Although the radii of gyration of the solvated EEs are all close to 2.6 Å in the four solutions, the solvated EE cavities in the AGSs become more compact and can localize ∼80% of an EE, which is considerably larger than that (∼40-60% and occasionally ∼80%) in water. These observations are attributed to a modification of the hydrogen-bonded network by the introduction of glucose molecules into water. The water acts as a promoter and stabilizer, by forming voids around glucose molecules and, in this fashion, favoring the localization of an EE with high efficiency. This study provides important information about EEs in physiological AGSs and suggests a new strategy to efficiently localize an EE in a stable cavity for further exploration of biological function.
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Affiliation(s)
- Jinxiang Liu
- Institute of Theoretical Chemistry, School of Chemistry and Chemical Engineering, Shandong University , Jinan, 250100, China
| | - Robert I Cukier
- Department of Chemistry, Michigan State University , East Lansing, 48224-1322, United States
| | - Yuxiang Bu
- Institute of Theoretical Chemistry, School of Chemistry and Chemical Engineering, Shandong University , Jinan, 250100, China
| | - Yuan Shang
- National Supercomputer Center in Jinan, Jinan, 250101, China
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34
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Yandell MA, King SB, Neumark DM. Decay dynamics of nascent acetonitrile and nitromethane dipole-bound anions produced by intracluster charge-transfer. J Chem Phys 2014; 140:184317. [DOI: 10.1063/1.4875021] [Citation(s) in RCA: 34] [Impact Index Per Article: 3.4] [Reference Citation Analysis] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Indexed: 11/14/2022] Open
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35
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King SB, Yandell MA, Neumark DM. Time-resolved photoelectron imaging of the iodide-thymine and iodide-uracil binary cluster systems. Faraday Discuss 2013; 163:59-72; discussion 117-38. [PMID: 24020196 DOI: 10.1039/c3fd20158a] [Citation(s) in RCA: 35] [Impact Index Per Article: 3.2] [Reference Citation Analysis] [Abstract] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Indexed: 11/21/2022]
Abstract
The energetics and dynamics of thymine and uracil transient negative ions were examined using femtosecond time-resolved photoelectron imaging. The vertical detachment energies (VDEs) of these systems were found to be 4.05 eV and 4.11 eV for iodide-thymine (I(-) x T) and iodide-uracil (I(-) x U) clusters, respectively. An ultraviolet pump pulse was used to promote intracluster charge transfer from iodide to the nucleobase. Subsequent electron detachment using an infrared probe pulse monitored the dynamics of the resulting transient negative ion. Photoelectron spectra reveal two primary features: a near-zero electron kinetic energy signal attributed to autodetachment and a transient feature representing photodetachment from the excited anion state. The transient state exhibits biexponential decay in both thymine and uracil complexes with short and long decay time constants ranging from 150-600 fs and 1-50 ps, respectively, depending on the excitation energy. However, both time constants are systematically shorter for I(-) x T. Vibrational autodetachment and iodine loss are identified as the primary decay mechanisms of the transient negative ions of thymine and uracil.
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Affiliation(s)
- Sarah B King
- Department of Chemistry, University of California, Berkeley, CA 94720, USA
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36
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Fujii A, Mizuse K. Infrared spectroscopic studies on hydrogen-bonded water networks in gas phase clusters. INT REV PHYS CHEM 2013. [DOI: 10.1080/0144235x.2012.760836] [Citation(s) in RCA: 61] [Impact Index Per Article: 5.5] [Reference Citation Analysis] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Indexed: 10/27/2022]
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37
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Application of ring-polymer molecular dynamics to electronically nonadiabatic excess electron dynamics in water clusters: Importance of nuclear quantum effects. Chem Phys Lett 2013. [DOI: 10.1016/j.cplett.2013.02.027] [Citation(s) in RCA: 10] [Impact Index Per Article: 0.9] [Reference Citation Analysis] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Indexed: 12/12/2022]
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38
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Yandell MA, King SB, Neumark DM. Time-resolved radiation chemistry: photoelectron imaging of transient negative ions of nucleobases. J Am Chem Soc 2013; 135:2128-31. [PMID: 23350789 DOI: 10.1021/ja312414y] [Citation(s) in RCA: 47] [Impact Index Per Article: 4.3] [Reference Citation Analysis] [Abstract] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Indexed: 02/04/2023]
Abstract
Time-resolved photoelectron imaging has been utilized to probe the energetics and dynamics of the transient negative ion of the nucleobase uracil. This species was created through charge transfer from an iodide anion within a binary iodide-uracil complex using a UV pump pulse; the ensuing dynamics were followed by photodetachment with a near-IR probe pulse. The photoelectron spectra show two time-dependent features, one from probe-induced photodetachment of the transient anion state and another from very low energy electron signal attributed to autodetachment. The transient anion was observed to decay biexponentially with time constants of hundreds of femtoseconds and tens of picoseconds, depending on the excitation energy. These dynamics are interpreted in terms of autodetachment from the initially excited state and a second, longer-lived species relaxed by iodine loss. Hydrogen loss from the N1 position may also occur in parallel.
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Affiliation(s)
- Margaret A Yandell
- Department of Chemistry, University of California, Berkeley, California 94720, USA
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39
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Mizuse K, Fujii A. Characterization of a solvent-separated ion-radical pair in cationized water networks: infrared photodissociation and Ar-attachment experiments for water cluster radical cations (H2O)n+(n = 3-8). J Phys Chem A 2013; 117:929-38. [PMID: 23330841 DOI: 10.1021/jp311909h] [Citation(s) in RCA: 46] [Impact Index Per Article: 4.2] [Reference Citation Analysis] [Abstract] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Indexed: 01/26/2023]
Abstract
We present infrared spectra of nominal water cluster radical cations (H(2)O)(n)(+) (n = 3-8), or to be precise, ion-radical complexes H(+)(H(2)O)(n-1)(OH), with and without an Ar tag. These clusters are closely related to the ionizing radiation-induced processes in water and are a good model to characterize solvation structures of the ion-radical pair. The spectra of Ar-tagged species show narrower bandwidths relative to those of the bare clusters due to the reduced internal energy via an Ar-attachment. The observed spectra are analyzed by comparing with those of the similar system, H(+)(H(2)O)(n), and calculated ones. We find that the observed spectra are attributable to ion-radical-separated motifs in n ≥ 5, as reported in the previous study (Mizuse et al. Chem. Sci.2011, 2, 868-876). Beyond the structural trends found in the previous study, we characterize isomeric structures and determine the number of water molecules between the charged site and the OH radical in each cluster size. In all of the characterized cluster structures (n = 5-8), the most favorable position of OH radical is the next neighbor of the charged site (H(3)O(+) or H(5)O(2)(+)). The positions and cluster structures are governed by the balance among the hydrogen-bonding abilities of the charged site, H(2)O, and OH radical. These findings on the ionized water networks lead to understanding of the detailed processes of ionizing radiation-initiated reactions in liquid water and aqueous solutions.
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Affiliation(s)
- Kenta Mizuse
- Department of Chemistry, Graduate School of Science, Tohoku University, Sendai 980-8578, Japan
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40
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Voora VK, Ding J, Sommerfeld T, Jordan KD. A Self-Consistent Polarization Potential Model for Describing Excess Electrons Interacting with Water Clusters. J Phys Chem B 2012; 117:4365-70. [DOI: 10.1021/jp306940k] [Citation(s) in RCA: 30] [Impact Index Per Article: 2.5] [Reference Citation Analysis] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Indexed: 02/04/2023]
Affiliation(s)
- Vamsee K. Voora
- Department of Chemistry and
Center for Molecular and Materials Simulations, University of Pittsburgh, Pittsburgh, Pennsylvania 15260, United
States
| | - Jing Ding
- Department of Chemistry and
Center for Molecular and Materials Simulations, University of Pittsburgh, Pittsburgh, Pennsylvania 15260, United
States
| | - Thomas Sommerfeld
- Department of Chemistry
and
Physics, Southeastern Louisiana University, Hammond, Louisiana 70402, United States
| | - Kenneth D. Jordan
- Department of Chemistry and
Center for Molecular and Materials Simulations, University of Pittsburgh, Pittsburgh, Pennsylvania 15260, United
States
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41
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Turi L, Rossky PJ. Theoretical studies of spectroscopy and dynamics of hydrated electrons. Chem Rev 2012; 112:5641-74. [PMID: 22954423 DOI: 10.1021/cr300144z] [Citation(s) in RCA: 129] [Impact Index Per Article: 10.8] [Reference Citation Analysis] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Indexed: 11/28/2022]
Affiliation(s)
- László Turi
- Department of Physical Chemistry, Eötvös Loránd University, Budapest, Hungary.
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42
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Affiliation(s)
- Ryan M. Young
- Department of Chemistry, University of California, Berkeley, California 94720,
United States
| | - Daniel M. Neumark
- Department of Chemistry, University of California, Berkeley, California 94720,
United States
- Chemical
Sciences Division, Lawrence Berkeley National Laboratory, Berkeley, California
94720, United States
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43
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Maeyama T, Yoshida K, Fujii A. Size-Dependent Metamorphosis of Electron Binding Motif in Cluster Anions of Primary Amide Molecules. J Phys Chem A 2012; 116:3771-80. [DOI: 10.1021/jp204621x] [Citation(s) in RCA: 6] [Impact Index Per Article: 0.5] [Reference Citation Analysis] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Indexed: 11/28/2022]
Affiliation(s)
- Toshihiko Maeyama
- Department of Chemistry, Graduate School of Science, Tohoku University, Aoba-ku, Sendai 980-8578, Japan
| | - Keiji Yoshida
- Department of Chemistry, Graduate School of Science, Tohoku University, Aoba-ku, Sendai 980-8578, Japan
| | - Asuka Fujii
- Department of Chemistry, Graduate School of Science, Tohoku University, Aoba-ku, Sendai 980-8578, Japan
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44
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Suzuki T. Time-resolved photoelectron spectroscopy of non-adiabatic electronic dynamics in gas and liquid phases. INT REV PHYS CHEM 2012. [DOI: 10.1080/0144235x.2012.699346] [Citation(s) in RCA: 53] [Impact Index Per Article: 4.4] [Reference Citation Analysis] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Indexed: 10/28/2022]
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45
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Young RM, Yandell MA, King SB, Neumark DM. Thermal effects on energetics and dynamics in water cluster anions (H2O)n−. J Chem Phys 2012; 136:094304. [DOI: 10.1063/1.3689439] [Citation(s) in RCA: 21] [Impact Index Per Article: 1.8] [Reference Citation Analysis] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Indexed: 11/14/2022] Open
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46
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Li F, Liu Y, Wang L, Zhao J, Chen Z. Improved stability of water clusters (H2O)30–48: a Monte Carlo search coupled with DFT computations. Theor Chem Acc 2012. [DOI: 10.1007/s00214-012-1163-5] [Citation(s) in RCA: 20] [Impact Index Per Article: 1.7] [Reference Citation Analysis] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Indexed: 11/30/2022]
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47
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Vysotskiy VP, Cederbaum LS, Sommerfeld T, Voora VK, Jordan KD. Benchmark Calculations of the Energies for Binding Excess Electrons to Water Clusters. J Chem Theory Comput 2012; 8:893-900. [DOI: 10.1021/ct200925x] [Citation(s) in RCA: 35] [Impact Index Per Article: 2.9] [Reference Citation Analysis] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Indexed: 12/11/2022]
Affiliation(s)
- Victor P. Vysotskiy
- Theoretische
Chemie, Institut
für Physikalische Chemie, Universität Heidelberg, D-69120
Heidelberg, Germany
| | - Lorenz S. Cederbaum
- Theoretische
Chemie, Institut
für Physikalische Chemie, Universität Heidelberg, D-69120
Heidelberg, Germany
| | - Thomas Sommerfeld
- Department
of Chemistry and
Physics, Southeastern Louisiana University, Hammond, Louisiana 70402,
United States
| | - Vamsee K. Voora
- Department
of Chemistry and Center
for Molecular and Materials Simulations, University of Pittsburgh,
Pittsburgh, Pennsylvania 15260, United States
| | - Kenneth D. Jordan
- Department
of Chemistry and Center
for Molecular and Materials Simulations, University of Pittsburgh,
Pittsburgh, Pennsylvania 15260, United States
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48
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Reid KL. Photoelectron angular distributions: developments in applications to isolated molecular systems. Mol Phys 2012. [DOI: 10.1080/00268976.2011.640292] [Citation(s) in RCA: 74] [Impact Index Per Article: 6.2] [Reference Citation Analysis] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Indexed: 10/14/2022]
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49
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Jacobson LD, Herbert JM. Theoretical Characterization of Four Distinct Isomer Types in Hydrated-Electron Clusters, and Proposed Assignments for Photoelectron Spectra of Water Cluster Anions. J Am Chem Soc 2011; 133:19889-99. [PMID: 22026436 DOI: 10.1021/ja208024p] [Citation(s) in RCA: 50] [Impact Index Per Article: 3.8] [Reference Citation Analysis] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Indexed: 11/28/2022]
Affiliation(s)
- Leif D. Jacobson
- Department of Chemistry, The Ohio State University, Columbus, Ohio 43210, United States
| | - John M. Herbert
- Department of Chemistry, The Ohio State University, Columbus, Ohio 43210, United States
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50
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Yandell MA, Young RM, King SB, Neumark DM. Effects of Excitation Energy on the Autodetachment Lifetimes of Small Iodide-Doped ROH Clusters (R═H–, CH3–, CH3CH2−). J Phys Chem A 2011; 116:2750-7. [DOI: 10.1021/jp208016w] [Citation(s) in RCA: 9] [Impact Index Per Article: 0.7] [Reference Citation Analysis] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Indexed: 01/17/2023]
Affiliation(s)
- Margaret A. Yandell
- Department of Chemistry, University of California, Berkeley, California 94720, United States
| | - Ryan M. Young
- Department of Chemistry, University of California, Berkeley, California 94720, United States
| | - Sarah B. King
- Department of Chemistry, University of California, Berkeley, California 94720, United States
| | - Daniel M. Neumark
- Department of Chemistry, University of California, Berkeley, California 94720, United States
- Chemical Sciences Division, Lawrence Berkeley National Laboratory, Berkeley, California 94720, United States
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