Host−Guest Complexes between an Aromatic Molecular Tweezer and Symmetric and Unsymmetric Dendrimers with a 4,4‘-Bipyridinium Core

Review of photoresponsive and glycoside dendrimers in biomaterials and sensors applications

Dendrimers are branched molecules with well-defined lengths, shapes, molecular weights, and monodispersity in comparison to linear polymers.

Giant Shape-Persistent Tetrahedral Porphyrin System: Light-Induced Charge Separation

Tetraphenylmethane appended with four pyridylpyridinium units works as a scaffold to self‐assemble four ruthenium porphyrins in a tetrahedral shape‐persistent giant architecture. The resulting supramolecular structure has been characterised in the solid state by X‐ray single crystal analysis and in solution by various techniques. Multinuclear NMR spectroscopy confirms the 1 : 4 stoichiometry with the formation of a highly symmetric structure. The self‐assembly process can be monitored by changes of the redox potentials, as well as by modifications in the visible absorption spectrum of the ruthenium porphyrin and by a complete quenching of both the bright fluorescence of the tetracationic scaffold and the weak phosphorescence of the ruthenium porphyrin. An ultrafast photoinduced electron transfer is responsible for this quenching process. The lifetime of the resulting charge separated state (800 ps) is about four times longer in the giant supramolecular structure compared to the model 1 : 1 complex formed by the ruthenium porphyrin and a single pyridylpyridinium unit. Electron delocalization over the tetrameric pyridinium structure is likely to be responsible for this effect.

Synthesis of Doubly Annulated m-Terphenyl-Based Molecular Tweezers and Their Charge-Transfer Complexes with DDQ as a Guest

The synthesis of a doubly-annulated m-terphenyl-based tweezer platform has been developed, which affords ready incorporation of various pincer units from monobenzenoid to polybenzenoid electron donors. The complexation study with 2,3-dichloro-5,6-dicyano-1,4-benzoquinone (DDQ) as guest has been carried out, and the crystal structure of T-Py∩DDQ reveals the sandwich-type binding mode in the solid state.

Electrochemical Behavior of Pyridinium and N-Methyl Pyridinium Cations in Aqueous Electrolytes for CO2 Reduction

The electrochemical reduction of aqueous pyridinium and N-methyl pyridinium ions is investigated in the absence and presence of CO₂ and electrolysis reaction products on glassy carbon, Au, and Pt electrodes are studied. Unlike pyridinium, N-methyl pyridinium is not electroactive at the Pt electrode. The electrochemical reduction of the two pyridine derivatives was found to be irreversible on glassy carbon. These results confirmed the essential role of the N-H bond of the pyridinium cation. In contrast, the electrochemical response of N-methyl pyridinium ion at the glassy carbon electrode suggests that a specific interaction occurs between the glassy carbon surface and the aromatic ring of the pyridinium derivative. For all electrodes, an enhancement of current was observed in the presence of CO₂ . However, NMR spectroscopy of the solutions following electrolysis showed no formation of methanol or other possible byproducts of the reduction of CO₂ in the presence of either pyridinium derivative ion.

Dendronised diazapyrenium derivatives: host–guest complexes in aqueous solution

Water soluble dendrimers, containing a diazapyrenium core, bind CB[7] with a higher association constant than CB[8].

The study of electron transfer reactions in a dendrimeric assembly: proper utilization of dendrimer fluorescence

Sensing applications of dendrimers: trapping of explosive nitroaromatic compounds within the dendrimer-cage followed by efficient quenching of its fluorescence.

Benzylic viologen dendrimers: a review of their synthesis, properties and applications

Dendrimers containing benzylic viologen branching units, their guest complexation, photophysical and biological applications has been reviewed.

Structural and spectroscopic properties of the second generation phosphorus-viologen "molecular asterisk"

The FTIR and FT Raman spectra of the second generation phosphorus-viologen "molecular asterisk" G2 built from cyclotriphosphazene core with 12 viologen units and 6 terminal phosphonate groups have been recorded and analyzed. The experimental X-ray data of 1,1-bis(4-formylbenzyl)-4,4'-bipyridinium bis(hexaflurophosphate) was used in molecular modeling studies. The optimization of isolated 1,1-bis(4-formylbenzyl)-4,4'-bipyridinium (BFBP) molecule without counter ions PF6(-) does not lead to significant changes of dihedral angles, thus the molecular conformation does not depend on interactions with the counter ions. The structural optimization and normal mode analysis were performed for G2 on the basis of the density functional theory (DFT). The calculated geometrical parameters and harmonic vibrational frequencies are predicted in a good agreement with the experimental data. It was found that G2 has a kind of "egg timer" structure with planar OC6H4CHNN(CH3) fragments and slightly non-planar cyclotriphosphazene core. The experimental IR and Raman spectra of G2 were interpreted by means of potential energy distribution.

Aromatic interactions by molecular tweezers and clips in chemical and biological systems

Noncovalent interactions involving aromatic rings, such as π-stacking and CH-π, occur throughout a range of fundamental processes including self-assembly and (bio)catalysis. Molecular clips and tweezers possess a central parallel or torus-shaped cavity with a surrounding belt of convergent aromatic rings; hence these structures exploit multiple aromatic interactions in a positively cooperative manner. Both clips and tweezers demonstrate selective binding of cationic or neutral guests that bear acceptor groups. The electrostatic surface potentials (ESP) explain this unexpected behavior: calculated ESPs were highly negative inside the tweezer or clip cavity, providing complementary profiles to the positive ESP plots of their preferred guest molecules. This Account presents more complex systems that use aromatic clips and tweezers to alter the reactivities of included guest species, to distinguish between guest enantiomers, and to interfere with biological processes such as enzymatic activity and protein aggregation. Napthalene tweezers show potential applications in organocatalysis. When pyridinium moieties are bound within the spacious cavity of naphthyl-spaced tweezers, the resulting complex significantly influences the first step of single-electron reductions of (bi)pyridinium salts. In addition, the environment within the tweezer cavity strongly accelerates the Menshutkin reaction (the alkylation of pyridine derivatives). Introduction of phosphonate, phosphate, or sulfate anions into the central aromatic bridge renders clips and tweezers water-soluble. Larger systems form extremely tight intertwined dimers that rely on the nonclassical hydrophobic effect for their stability. Smaller clips and tweezers with a simple benzene bridge remain monomeric in buffered aqueous solution and display a complementary binding profile. While the clips with parallel sidewalls prefer flat aromatic cations such as pyridinium salts, the torus-shaped tweezers bind to basic amino acids lysine and arginine via a threading process. These mutually exclusive binding modes make water-soluble clips and tweezers valuable tools for probing critical biological interactions with positively charged amino acid side chains and cofactors. Molecular clips and tweezers can be employed for the complete inhibition of dehydrogenases. The clip extracts NAD(+) from its Rossman fold, while the tweezer complexes access strategic lysine residues around the active site. Our new enzyme inhibitors recognize the protein surface and thus offer additional targets for medicinal chemistry. Finally, the ability of molecular tweezers to cap critical lysine residues can be used to interfere with the pathology of protein misfolding diseases such as Alzheimer's disease, because many of them involve noncovalent interactions with these critical residues during their early stages. When the key protein produces a β-sheet-rich nucleus, this structure undergoes spontaneous polymerization into highly toxic oligomers, ultimately leading to mature fibrils. The benzene-spaced phosphate tweezer forms a specific complex with lysine residues 16 and 28 in Aβ42 and thus prevents the formation of misfolded oligomers rich in β-sheets. This entirely new process-specific mechanism that prevents pathologic protein aggregation also operates in many other related amyloidogenic proteins.

Electrochemical study on the effects of epigenetic cytosine methylation on anti-benzo[a]pyrene diol epoxide damage at TP53 oligomers

Anti-benzo[a]pyrene-r-7,t-8-dihydrodiol-t-9,10-epoxide (anti-BPDE) is a known carcinogen that damages DNA, and this damage is influenced by the DNA sequence and epigenetic factors. The influence of epigenetic cytosine methylation on the reaction with anti-BPDE at a known hotspot DNA damage site was studied electrochemically. Gold electrodes were modified with thiolated DNA oligomers spanning codons 270-276 of the TP53 gene. The oligomers exhibited 5-carbon cytosine methylation at the codon 273 location on the bound probe, the acquired complementary target, or both. Redox active diviologen compounds of the form C(12)H(25)V(2+)C(6)H(12)V(2+)C(12)H(25) (V(2+) = 4,4'-bipyridyl or viologen, C12-Viologen) were employed to detect anti-BPDE damage to DNA. DNA was exposed to racemic (±)- or enantiomerically pure (+)-anti-BPDE solutions followed by electrochemical interrogation in the presence of C12-Viologen. Background subtracted square wave voltammograms (SWV) showed the appearance of two peaks at approximately -0.38 V and -0.55 V vs Ag/AgCl upon anti-BPDE exposure. The acquired voltammetry is consistent with singly reduced C12-Viologen dimers bound at two different DNA environments, which arise from BPDE damage and are influenced by cytosine methylation and BPDE stereochemical considerations. UV spectroscopic and mass spectrometric methods employed to validate the electrochemical responses showed that (+)-anti-BPDE primarily adopts a minor groove bound orientation within the oligomers while selectively targeting the nontranscribed ssDNA sequence within the duplexes.

Electron-transfer processes in dendrimers and their implication in biology, catalysis, sensing and nanotechnology

The extraordinary development of the design and synthesis of dendrimers has allowed scientists to locate redox sites at precise positions (core, focal points, branching points, termini, cavities) of these perfectly defined macromolecules, which have generation-controlled sizes and topologies matching those of biomolecules. Redox-dendrimer engineering has led to fine modelling studies of electron-transfer metalloproteins, in which the branches of the dendrimers hinder access to the active site in a manner reminiscent of that of the protein. It has also enabled the construction of remarkable catalysts, sensors and printboards, including by sophisticated design of the interface between redox dendrimers and solid-state devices - for example by functionalizing electrodes and other surfaces. Electron-transfer processes between dendrimers and a variety of other molecules hold promising applications in diverse areas that range from bio-engineering to sensing, catalysis and energy materials.

Syntheses, Structure and Electrochemical Anion Recognition of 5-Ferrocenylisophthalicdiacyl Hydrazones

Three new 5-ferrocenylisophthalicdiacyl hydrazones derivatives (molecular tweezers), have been prepared by condensation reactions of 5-ferrocenylisophthalic dihydrazide with the corresponding aromatic aldehyde. The compounds were fully characterised by spectroscopic techniques, mass spectrometry, cyclic voltammetry and an X-ray crystal structure of one example. Electrochemical investigations have demonstrated that addition of H2PO4- resulted in large shifts of respective Fc/Fc+ redox coupled to more negative potentials, indicating that these compounds have a good ability to recognise H2PO4-.

Preparation of Novel Molecular Tweezers based on 3,6-O-(2-acylhydrazinocarbonyl) Esters of Hyodeoxycholic acid using Microwave Irradiation

Ten novel molecular tweezers based on the 3,6- O-(2-acylhydrazinocarbonyl) esters of hyodeoxycholic acid have been synthesised using microwave irradiation. Their structures were established by 1H NMR, IR, MS spectra and elemental analysis. Their binding properties were examined by UV-Vis spectra titration. The preliminary results indicate that these molecular tweezers show good recognition properties for Cl-, Br-, I-.

Changing the volume of a giant macrocycle: the swelling of the macrocycle with organic solvents

The novel tetrahedral macrocycles 1a-1c have been synthesized. Macrocycles 1a and 1c were revealed to have the property to increase in volume in solution by complexation between the macrocycle and the solvent molecules.

Electrochemical detection of anti-benzo[a]pyrene diol epoxide DNA damage on TP53 codon 273 oligomers

DNA damage from (+/-)-anti-benzo[a]pyrene-7,8-dihydrodiol-9,10-epoxide (BPDE) at a hotspot TP53 gene sequence was electrochemically detected. BPDE was exposed to gold electrode immobilized double-stranded DNA oligomers followed by voltammetric measurements in the presence of redox-active C(12)H(25)V(2+)C(6)H(12)V(2+)C(12)H(25) (V(2+) = 4,4'-bipyridyl or viologen, C12-viologen). Square wave voltammograms from BPDE-exposed DNA-modified electrodes showed the emergence of a C12-viologen-DNA complex at -0.37 V versus Ag/AgCl. The peak current intensity of this redox wave was dependent on both BPDE concentration and exposure time. Controls with alternate xenobiotics and DNA sequences showed this redox wave to be primarily due to BPDE damage at the wild-type DNA sequence. The detection limit was determined to be approximately 170 nM BPDE. Mass spectrometry and UV thermal melting experiments provided insight into the BPDE reaction and mirrored the sensor results. This report demonstrates that an electrochemical hybridization sensor can be used to detect sequence-related xenobiotic DNA damage.

Molecular tweezers: concepts and applications

Taken to the molecular level, the concept of "tweezers" opens a rich and fascinating field at the convergence of molecular recognition, biomimetic chemistry and nanomachines. Composed of a spacer bridging two interaction sites, the behaviour of molecular tweezers is strongly influenced by the flexibility of their spacer. Operating through an "induced-fit" recognition mechanism, flexible molecular tweezers select the conformation(s) most appropriate for substrate binding. Their adaptability allows them to be used in a variety of binding modes and they have found applications in chirality signalling. Rigid spacers, on the contrary, display a limited number of binding states, which lead to selective and strong substrate binding following a "lock and key" model. Exquisite selectivity may be expressed with substrates as varied as C(60) , nanotubes and natural cofactors, and applications to molecular electronics and enzyme inhibition are emerging. At the crossroad between flexible and rigid spacers, stimulus-responsive molecular tweezers controlled by ionic, redox or light triggers belong to the realm of molecular machines, and, applied to molecular tweezing, open doors to the selective binding, transport and release of their cargo. Applications to controlled drug delivery are already appearing. The past 30 years have seen the birth of molecular tweezers; the next many years to come will surely see them blooming in exciting applications.

Synthesis, structure, and binding property of pentiptycene-based rigid tweezer-like molecules

A series of pentiptycene-derived rigid tweezer-like molecules have been efficiently synthesized, and their structures have been determined by NMR, MS spectra, and X-ray analysis. Moreover, it was also found that molecular tweezer 15 showed efficient binding ability toward C(60).

Reversible self-assembly of dendrimer based on polyhedral oligomeric silsesquioxanes (POSS)

An acid-base switchable dendritic complex was constructed by self-assembly between dibenzo-24-crown-8 terminated T(10)-POSS dendrimer and dibenzylammonium hexafluorophosphate salt based on T(8)-POSS. The formation and its threading-dethreading property were characterized by (1)H NMR and UV-visible absorption spectroscopy.

Viologen-based redox-active ionic liquid crystals forming columnar phases

Viologens possessing three alkoxy chains at each terminal self-organize into columnar liquid-crystalline phases through nanophase segregation and electrostatic interactions. These viologens are redox-active and susceptible to two consecutive electrochemical reductions.