Pyromellitamide Aggregates and Their Response to Anion Stimuli

Molecular bowls for inclusion complexation of toxic anticancer drug methotrexate

We describe the preparation and study of novel cavitands, molecular bowls 16+ and 26+, as good binders of the anticancer drug methotrexate (MTX). Molecular bowls are comprised of a curved tribenzotriquinacene (TBTQ) core conjugated to three macrocyclic pyridinium units at the top. The cavitands are easily accessible via two synthetic steps from hexabromo-tribenzotriquinacene in 25% yield. As amphiphilic molecules, bowls 16+ and 26+ self-associate in water by the nucleation-to-aggregation pathway (NMR). The bowls are preorganized, having a semi-rigid framework comprising a fixed bottom with a wobbling pyridinium rim (VT NMR and MD). Further studies, both experimental (NMR) and computational (DFT and MCMM), suggested that a folded MTX occupies the cavity of bowls wherein it forms π-π, C-H-π, and ion pairing intermolecular contacts but also undergoes desolvation to give stable binary complexes (μM) in water. Moreover, a computational protocol is introduced to identify docking pose(s) of MTX inside molecular bowls from NMR shielding data. Both molecular bowls have shown in vitro biocompatibility with liver and kidney cell lines (MTS assay). As bowl 26+ is the strongest binder of MTX reported to date, we envision it as an excellent candidate for further studies on the way toward developing an antidote capable of removing MTX from overdosed cancer patients.

Molecular baskets form inclusion complexes with phenethylamine drugs in water

Molecular basket 16- comprising a nonpolar cavity and an anionic nest of six carboxylates at its rim was found to form inclusion complexes with (1R, 2S)-ephedrine, (1R, 2R)-pseudoephedrine, and (1S, 2R)-tranylcypromine. Experimental results (NMR) and theory (MM/DFT) suggest the basket encapsulates phenethylamines in unique and predictable fashion.

Quantifying Intermolecular Interactions in Asymmetric Peptide Organocatalysis as a Key toward Understanding Selectivity

The kinetic resolution of trans-cyclohexane-1,2-diol with a lipophilic oligopeptide catalyst shows extraordinary selectivities. To improve our understanding of the factors governing selectivity, we quantified the Gibbs free energies of interactions of the peptide with both enantiomers of trans-cyclohexane-1,2-diol using nuclear magnetic resonance (NMR) spectroscopy. For this, we use advanced methods such as transverse relaxation (R2), diffusion measurements, saturation transfer difference (STD), and chemical shift (δ) analysis of peptide-diol mixtures upon varying their composition (NMR titrations). The methods employed give comparable and consistent results. The molecular recognition by the catalyst is approximately 3 kJ mol-1 in favor of the preferentially acetylated (R,R)-enantiomer in the temperature range studied. Interestingly, the difference of 3 kJ mol-1 is also confirmed by results from reaction monitoring of the acylation step under catalytic conditions, indicating that this finding is true regardless of whether the investigation is performed on the acetylated species or on the free catalyst. To arrive at these conclusions, the self-association of both the catalyst and the substrate in toluene was found to play an important role and thus needs to be taken into account in reaction screening.

An Insight into Anion Extraction by Amphiphiles: Hydrophobic Microenvironments as a Requirement for the Extractant Selectivity

Coupling of electron-deficient urea units with aliphatic chains gives rise to amphiphilic compounds that bind to phosphate and benzoate anions in the hydrogen bonding competitive solvent (DMSO) with KAss = 6 580 M-1 and KAss = 4 100 M-1, respectively. The anchoring of these receptor moieties to the dendritic support does not result in a loss of anion binding and enables new applications. Due to the formation of a microenvironment in the dendrimer, the high selectivity of the prepared compound toward benzoate is maintained even in the presence of aqueous media during extraction experiments. In the presence of binding sites at 5 mM concentration, the amount of benzoate corresponding to the full binding site occupancy is transferred into the chloroform phase from its 10 mM aqueous solution. A thorough investigation of the extraction behavior of the dendrimer reported here, supported by a series of molecular dynamics simulations, provides new insight into the fundamental principles of extraction of inorganic anions by amphiphiles.

Hydrophilic and hydrophobic carboxamide pincers as anion hosts

Hydrophobic and hydrophilic, monotopic and ditopic carboxamide pincer hosts containing ethyl, hexyl, 2-hydroxyethyl and 2-hydroxyethyl ethyl ether pendant arms were synthesized. Solubility trends indicated that solubilities in water or hydrocarbon solvents varied depending on the nature of the pendant arms. Binding constants for hydrophilic pincers were larger in general than their hydrophobic analogs. Significant synergistic binding effects for the ditopic hosts were not observed.

Ag-Induced metallogel based on cyclooctatetrathiophene: structural characterization and stimuli-responsive properties

Based on saddle-shaped cyclooctathiophene (COTh) as a building block, ligands 2 and 3 were synthesized bearing 3- or 4-substituted pyridyl groups as coordination groups, which showed strong gelation abilities with AgBF4 in several solvents at room temperature. This Ag+-induced metallogel exhibited outstanding stimuli-responsive properties upon addition of halogen ions, acetonitrile or H2O.

Stimuli-responsive gelators from carbamoyl sugar derivatives and their responses to metal ions and tetrabutylammonium salts

Carbohydrate-based low molecular weight gelators (LMWGs) are interesting compounds with a variety of applications. In this research, a library of nineteen carbamate derivatives of N-acetyl-d-glucosamine were synthesized and characterized, and several derivatives were found to be effective LMWGs. They formed gels in pump oils as well as mixtures of water with ethanol or water with DMSO. The structures of the carbamoyl chains played an important role in the gelation properties, short chain aliphatic derivatives and phenyl carbamates formed gels in more solvents than certain aromatic and dimeric carbamates. The phenyl carbamate gelator was also selected for the encapsulation of naproxen sodium, and the drug slowly diffused from the gel to the aqueous phase as indicated by UV-vis spectroscopy. In addition, we also found that the p-methoxyl benzyl carbamate derivative showed interesting stimuli-responsive gelation properties in the presence of metal salts and tetrabutylammonium salts. The gels were characterized using optical microscopy, scanning electron microscopy, rheology and other methods. The self-assembling mechanisms of the gelators were studied using ¹H NMR spectroscopy. The preparation, characterization, and molecular assembling properties of these compounds are reported. The results obtained from this study are useful for the design of other LMWGs and the sugar derivatives can be explored for different biological applications. The formation of spontaneous ionic gels can be applicable for a plethora of applications including catalysis and environmental remediation.

Buffer effects on site directed Cu2+-labeling using the double histidine motif

The double histidine, or dHis, motif has emerged as a powerful spin labeling tool to determine the conformations and dynamics, subunit orientation, native metal binding site location, and other physical characteristics of proteins by Cu²⁺-based electron paramagnetic resonance. Here, we investigate the efficacy of this technique in five common buffer systems, and show that buffer choice can impact the loading of Cu²⁺-NTA into dHis sites, and more generally, the sensitivity of the overall technique. We also present a standardized and optimized examination of labeling of the dHis motif with Cu²⁺-NTA for EPR based distance measurements. We provide optimal loading procedures, using representative EPR and UV/Vis data for each step in the process. From this data, we find that maximal dHis loading can be achieved in under 30 min with low temperature sample incubation. Using only these optimal procedures, we see up to a 28% increase in fully labeled proteins compared to previously published results in N-ethylmorpholine. Using both this optimized procedure as well as a more optimal buffer, we can achieve up to 80% fully loaded proteins, which corresponds to a 64% increase compared to the prior data. These results provide insight and deeper understanding of the dHis Cu²⁺-NTA system, the variables that impact its efficacy, and present a method by which these issues may be mitigated for the most efficient labeling.

Selective Proton-Mediated Transport by Electrogenic K+-Binding Macrocycles

Synthetic K+-binding macrocycles have potential as therapeutic agents for diseases associated with KcsA K+ channel dysfunction. We recently discovered that artificial self-assembled n-alkyl-benzoureido-15-crown-5-ether form selective ion-channels for K+ cations, which are highly preferred to Na+ cations. Here, we describe an impressive selective activation of the K+ transport via electrogenic macrocycles, stimulated by the addition of the carbonyl cyanide-4-(trifluoromethoxy) phenylhydrazone (FCCP) proton carrier. The transport performances show that both the position of branching or the size of appended alkyl arms favor high transport activity and selectivity SK+/Na+ up to 48.8, one of the best values reported up to now. Our study demonstrates that high K+/Na+ selectivity obtained with natural KcsA K+ channels is achievable using simpler artificial macrocycles displaying constitutional functions.

Stimuli-Responsive Metallogels for Synthesizing Ag Nanoparticles and Sensing Hazardous Gases

A newly synthesized bis-pyridyl ligand having a diphenyl ether backbone (LP6) displayed the ability to form crystalline coordination polymers (CP1-CP6) which were fully characterized by single crystal X-ray diffraction. Most of the resulting polymers were lattice-occluded crystalline solids-a structural characteristic reminiscent to gels. The reactants of the coordination polymers produced metallogels in DMSO/water confirming the validity of the design principles with which the coordination polymers were synthesized. Some of the metallogels displayed material properties like in situ synthesis of Ag nanoparticles and stimuli-responsive gel-sol transition including sensing hazardous gases like ammonia and hydrogen sulfide.

Cooperativity between hydrogen- and halogen bonds: the case of selenourea

A combined experimental/theoretical investigation on the cooperativity between hydrogen- and halogen bonds is presented. In this study, it is shown that selenourea can interact at the same time with a benzoate anion and a polarized iodine, with the two interactions influencing and enhancing each other.

Tetra-(meta-butylcarbamoyl)azobenzene: A Rationally Designed Photoswitch with Binding Affinity for Oxoanions in a Long-Lived Z-State

A new photoswitchable anion receptor 1 based on a tetra-meta-substituted azobenzene skeleton has been readily synthesized in two steps. Titration studies (¹H NMR) and theoretical predictions (DFT/M06-2X/6-31G(d)/DMSO-SM8) revealed that nonplanar Z-1 is a better host for anions than E-1, which results from the greater ability of four amide NH protons in the Z-state to cooperatively bind oxoanions, in particular tetrahedral H₂PO₄^- and H₂AsO₄^-. Furthermore, the thermal decay of Z-1 (τ_1/2 = 11 days) is not accelerated by anion binding.

Carbazole modified salicylaldimines and their difluoroboron complexes: effect of the tert-butyl and trifluoromethyl terminal groups on organogelation and piezofluorochromism

Luminescent nanofibers were generated from nontraditional π-gelators based on salicylaldimines and their difluoroboron complex bearing tert-butyl carbazole and trifluoromethylbenzene.

Assessing cooperativity in supramolecular systems

In this tutorial review, different aspects of cooperativity in supramolecular chemistry and their thermodynamic analysis are discussed.

A Capped Dipeptide Which Simultaneously Exhibits Gelation and Crystallization Behavior

Short peptides capped at their N-terminus are often highly efficient gelators, yet notoriously difficult to crystallize. This is due to strong unidirectional interactions within fibers, resulting in structure propagation only along one direction. Here, we synthesize the N-capped dipeptide, benzimidazole-diphenylalanine, which forms both hydrogels and single crystals. Even more remarkably, we show using atomic force microscopy the coexistence of these two distinct phases. We then use powder X-ray diffraction to investigate whether the single crystal structure can be extrapolated to the molecular arrangement within the hydrogel. The results suggest parallel β-sheet arrangement as the dominant structural motif, challenging existing models for gelation of short peptides, and providing new directions for the future rational design of short peptide gelators.

Controlled Organocatalytic Ring-Opening Polymerization of ε-Thionocaprolactone

For the first time, the controlled ring-opening polymerization (ROP) of ε-thionocaprolactone (tnCL) is conducted. The organocatalytic ROP of tnCL occurs without carbonyl scrambling, leading to homopoly(ε-thionocaprolactone) (PtnCL). The ROP by base catalysts alone is proposed to proceed via a nucleophilic mechanism, while the addition of an H-bond donating thiourea (TU) is shown to provide excellent reaction control. The increased reaction control provided by the TU occurs in the virtual absence of binding between tnCL and TU, and a mechanistic account for this observation is discussed. The monomer ring strain is measured and found to be similar to δ-valerolactone (VL). Copolymers with VL are synthesized, and the resulting analysis of the copolymer materials properties provides the only known physical characterizations of poly(thio(no)ester-co-ester)s.

MPTTF-containing tripeptide-based organogels: receptor for 2,4,6-trinitrophenol and multiple stimuli-responsive properties

A series of monopyrrolotetrathiafulvalene-tripeptide conjugates have been synthesized and investigated as new low-molecular mass organogelators. It was found that most of these compounds could immobilize low-polarity solvents readily and the gelation behaviors of these gelators showed a dependence on the amino acid residues. These organogels were thoroughly studied using various techniques including atomic force microscopy (AFM), field-emission scanning electron microscopy (FE-SEM), circular dichroism (CD) spectroscopy, Fourier-transform infrared (FT-IR) spectroscopy, (1)H NMR spectroscopy, UV-Vis absorption spectroscopy and X-ray diffraction (XRD). The results showed that the cooperative interplay of hydrogen bonding, π-π stacking and SS interactions were the main driving force for the formation of the gels. Of all the organogels, the aromatic solvent gels, such as toluene gel, exhibited multiple-stimulus responsiveness towards heating, shaking, chemical redox activity and the presence of anions, thus leading to reversible sol-gel phase transitions. Most interestingly, gelation in the presence of 2,4,6-trinitrophenol (TNP) in organic solvents could be observed visually with a concomitant color change through donor-acceptor interactions. The strength of the charge-transfer interaction between gelators and TNP was proportional to the incubation time and increasing critical gelation concentration (CGC). The gels could function as efficient absorbents for potential application in removal of crystal violet and rhodamine B dyes from water.

Gel properties of T-shaped tetrathiafulvalene–pyridazine conjugates and F4TCNQ-induced morphological transformation

T-shaped organic π-conjugates and their F₄TCNQ charge-transfer (CT) complexes are developed as LMOGs. The morphological changes of the organogels occur obviously due to the CT interaction.

Multi-stimuli-responsive chiral organogels based on peptide derivatives

A series of chiral aryl amide compounds bearing peptide pendants have been investigated as low molecular weight gelators. A mechanistic study reveals that complementary hydrogen bonding from peptide pendants is the main driving force for the formation of organogels. This new class of organogels can exhibit multi-stimuli-responsive behavior upon applying (1) thermal, (2) pH, (3) enantiomeric purity, and (4) fluoride anion stimuli. Enantiomeric purity as a new external stimulus displays sensitive stimuli-responsiveness; only 0.02 equiv. of the enantiomer can completely disassemble the gel aggregate. They will serve as excellent smart materials with potential applications in chiral sensors, recognition, and separation.

Cooperative ion pair recognition by multitopic l-ornithine based salt receptors

The development of l-ornithine based multitopic receptors allowed us to obtain an effective and selective salt receptor.

Small angle neutron scattering (SANS) studies on the structural evolution of pyromellitamide self-assembled gels

The kinetics of aggregation of two pyromellitamide gelators, tetrabutyl- (C4) and tetrahexyl-pyromellitamide (C6), in deuterated cyclohexane has been investigated by small angle neutron scattering (SANS) for up to 6 days. The purpose of this study was to improve our understanding of how self-assembled gels are formed. Short-term (< 3 h) time scales revealed multiple phases with the data for the tetrabutylpyromellitamide C4, indicating one-dimensional stacking and aggregation corresponding to a multifiber braided cluster arrangement that is about 35 Å in diameter. The corresponding tetrahexylpyromellitamide C6 data suggest that the C6 also forms one-dimensional stacks but that these aggregate to a thicker multifiber braided cluster that has a diameter of about 62 Å. Over a longer period of time, the radius, persistence length, and contour length all continue to increase in 6 days after cooling. These data suggest that structural changes in self-assembled gels occur over a period exceeding several days and that fairly subtle changes in the structure (e.g., tail-length) can influence the packing of molecules in self-assembled gels on the single-to-few fiber bundle stage.

Rationally designed anion-responsive-organogels: sensing F⁻ via reversible color changes in gel-gel states with specific selectivity

Through the rational introduction of the multi self-assembly driving forces and F(-) sensing sites into a gelator molecule, low-molecular-weight organogelators L1 and L2 were designed and synthesized. L1 and L2 showed excellent gelation ability in DMF and DMSO. They could form stable organogels (OGL1 and OGL2) in DMF and DMSO with very low critical gelation concentrations. OGL1 and OGL2 could act as anion-responsive organogels (AROGs). Unlike most of the reported AROGs showing gel-sol phase transition according to the anions' stimulation, OGL1 could colorimetrically sense F(-) under gel-gel states. Upon addition of F(-), OGL1 showed dramatic color changes, while the color could be recovered by adding H(+). Moreover, OGL1 showed specific selectivity for F(-), other common anions and cations could not lead to any similar response. What deserves to be mentioned is that the report on specific sensing of anions under gel-gel states is very scarce. The gel-gel state recognition can endow the organogel OGL1 with the merits of facile and efficient properties for rapid detection of F(-). Therefore, OGL1 could act as a F(-) responsive smart material.

A multistimuli-responsive photochromic metal-organic gel

A photochromic metal-organic gel with thermo-, photo-, and anion-responsive behavior is obtained. Unusually, heating of the Al-ligand solution leads to gel formation and cooling to room temperature reverses the process to reform the solution. The gel is sensitive to weakly coordinating anions. Additionally, reversible photochromic transformations take place both in the solution and gel states, accompanied by reversibly switched luminescence.

Highly interlocked anion-bridged supramolecular networks from interrupted imidazole–urea gels

Hydrogels from a combination of imidazole and urea hydrogen bonding interactions are turned off by metal complexation and anion binding.