1
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Al Shehimy S, Le HD, Amano S, Di Noja S, Monari L, Ragazzon G. Progressive Endergonic Synthesis of Diels-Alder Adducts Driven by Chemical Energy. Angew Chem Int Ed Engl 2024; 63:e202411554. [PMID: 39017608 DOI: 10.1002/anie.202411554] [Citation(s) in RCA: 0] [Impact Index Per Article: 0] [Reference Citation Analysis] [Abstract] [Key Words] [Grants] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Received: 06/19/2024] [Revised: 07/16/2024] [Accepted: 07/17/2024] [Indexed: 07/18/2024]
Abstract
The overwhelming majority of artificial chemical reaction networks respond to stimuli by relaxing towards an equilibrium state. The opposite response-moving away from equilibrium-can afford the endergonic synthesis of molecules, of which only rare examples have been reported. Here, we report six examples of Diels-Alder adducts formed in an endergonic process and use this strategy to realize their stepwise accumulation. Indeed, systems respond to repeated occurrences of the same stimulus by increasing the amount of adduct formed, with the final network distribution depending on the number of stimuli received. Our findings indicate how endergonic processes can contribute to the transition from responsive to adaptive systems.
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Affiliation(s)
- Shaymaa Al Shehimy
- University of Strasbourg, CNRS, Institut de Science et d'Ingénierie Supramoléculaires (ISIS) UMR 7006, 8 allée Gaspard Monge, 67000, Strasbourg, France
| | - Hai-Dang Le
- University of Strasbourg, CNRS, Institut de Science et d'Ingénierie Supramoléculaires (ISIS) UMR 7006, 8 allée Gaspard Monge, 67000, Strasbourg, France
| | - Shuntaro Amano
- University of Strasbourg, CNRS, Institut de Science et d'Ingénierie Supramoléculaires (ISIS) UMR 7006, 8 allée Gaspard Monge, 67000, Strasbourg, France
| | - Simone Di Noja
- University of Strasbourg, CNRS, Institut de Science et d'Ingénierie Supramoléculaires (ISIS) UMR 7006, 8 allée Gaspard Monge, 67000, Strasbourg, France
| | - Luca Monari
- University of Strasbourg, CNRS, Institut de Science et d'Ingénierie Supramoléculaires (ISIS) UMR 7006, 8 allée Gaspard Monge, 67000, Strasbourg, France
| | - Giulio Ragazzon
- University of Strasbourg, CNRS, Institut de Science et d'Ingénierie Supramoléculaires (ISIS) UMR 7006, 8 allée Gaspard Monge, 67000, Strasbourg, France
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2
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Wu J, Greenfield JL. Photoswitchable Imines Drive Dynamic Covalent Systems to Nonequilibrium Steady States. J Am Chem Soc 2024; 146:20720-20727. [PMID: 39025474 PMCID: PMC11295185 DOI: 10.1021/jacs.4c03817] [Citation(s) in RCA: 0] [Impact Index Per Article: 0] [Reference Citation Analysis] [Abstract] [Grants] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Received: 03/18/2024] [Revised: 06/06/2024] [Accepted: 07/02/2024] [Indexed: 07/20/2024]
Abstract
Coupling a photochemical reaction to a thermal exchange process can drive the latter to a nonequilibrium steady state (NESS) under photoirradiation. Typically, systems use separate motifs for photoresponse and equilibrium-related processes. Here, we show that photoswitchable imines can fulfill both roles simultaneously, autonomously driving a dynamic covalent system into a NESS under continuous light irradiation. We demonstrate this using transimination reactions, where E-to-Z photoisomerism generates a more kinetically labile species. At the NESS, energy is stored both in the metastable Z-isomer of the imine and in the system's nonequilibrium constitution; when the light is switched off, this stored energy is released as the system reverts to its equilibrium state. The system operates autonomously under continuous light irradiation and exhibits characteristics of a light-driven information ratchet. This is enabled by the dual-role of the imine linkage as both the photochromic and dynamic covalent bond. This work highlights the ability and application of these imines to drive systems to NESSs, thus offering a novel approach in the field of systems chemistry.
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Affiliation(s)
- Jiarong Wu
- Institut
für Organische Chemie, Universität
Würzburg, Würzburg 97074, Germany
- Center
for Nanosystems Chemistry (CNC), Universität
Würzburg, Würzburg 97074, Germany
| | - Jake L. Greenfield
- Institut
für Organische Chemie, Universität
Würzburg, Würzburg 97074, Germany
- Center
for Nanosystems Chemistry (CNC), Universität
Würzburg, Würzburg 97074, Germany
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3
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Rivero DS, Pérez-Pérez Y, Perretti MD, Santos T, Scoccia J, Tejedor D, Carrillo R. Kinetic Control of Complexity in Multiple Dynamic Libraries. Angew Chem Int Ed Engl 2024; 63:e202406654. [PMID: 38660925 DOI: 10.1002/anie.202406654] [Citation(s) in RCA: 0] [Impact Index Per Article: 0] [Reference Citation Analysis] [Abstract] [Key Words] [Grants] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Received: 04/08/2024] [Revised: 04/22/2024] [Accepted: 04/24/2024] [Indexed: 04/26/2024]
Abstract
Multiple dynamic libraries of compounds are generated when more than one reversible reaction comes into play. Commonly, two or more orthogonal reversible reactions are used, leading to non-communicating dynamic libraries which share no building blocks. Only a few examples of communicating libraries have been reported, and in all those cases, building blocks are reversibly exchanged from one library to the other, constituting an antiparallel dynamic covalent system. Herein we report that communication between two different dynamic libraries through an irreversible process is also possible. Indeed, alkyl amines cancel the dynamic regime on the nucleophilic substitution of tetrazines, generating kinetically inert compounds. Interestingly, such amine can be part of another dynamic library, an imine-amine exchange. Thus, both libraries are interconnected with each other by an irreversible process which leads to kinetically inert structures that contain parts from both libraries, causing a collapse of the complexity. Additionally, a latent irreversible intercommunication could be developed. In such a way, a stable molecular system with specific host-guest and fluorescence properties, could be irreversibly transformed when the right stimulus was applied, triggering the cancellation of the original supramolecular and luminescent properties and the emergence of new ones.
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Affiliation(s)
- David S Rivero
- Instituto de Productos Naturales y Agrobiología (IPNA-CSIC), Avda. Astrofísico Fco. Sánchez 3, 38206, La Laguna, Spain
| | - Yaiza Pérez-Pérez
- Instituto de Productos Naturales y Agrobiología (IPNA-CSIC), Avda. Astrofísico Fco. Sánchez 3, 38206, La Laguna, Spain
| | - Marcelle D Perretti
- Instituto de Productos Naturales y Agrobiología (IPNA-CSIC), Avda. Astrofísico Fco. Sánchez 3, 38206, La Laguna, Spain
| | - Tanausú Santos
- Departamento de Química, Centro de Investigación en Síntesis Química, Universidad de La Rioja, 26006, Logroño, Spain
| | - Jimena Scoccia
- Instituto de Productos Naturales y Agrobiología (IPNA-CSIC), Avda. Astrofísico Fco. Sánchez 3, 38206, La Laguna, Spain
| | - David Tejedor
- Instituto de Productos Naturales y Agrobiología (IPNA-CSIC), Avda. Astrofísico Fco. Sánchez 3, 38206, La Laguna, Spain
| | - Romen Carrillo
- Instituto de Productos Naturales y Agrobiología (IPNA-CSIC), Avda. Astrofísico Fco. Sánchez 3, 38206, La Laguna, Spain
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4
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Borsley S, Leigh DA, Roberts BMW. Molecular Ratchets and Kinetic Asymmetry: Giving Chemistry Direction. Angew Chem Int Ed Engl 2024; 63:e202400495. [PMID: 38568047 DOI: 10.1002/anie.202400495] [Citation(s) in RCA: 0] [Impact Index Per Article: 0] [Reference Citation Analysis] [Abstract] [Key Words] [Grants] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Received: 01/12/2024] [Indexed: 05/03/2024]
Abstract
Over the last two decades ratchet mechanisms have transformed the understanding and design of stochastic molecular systems-biological, chemical and physical-in a move away from the mechanical macroscopic analogies that dominated thinking regarding molecular dynamics in the 1990s and early 2000s (e.g. pistons, springs, etc), to the more scale-relevant concepts that underpin out-of-equilibrium research in the molecular sciences today. Ratcheting has established molecular nanotechnology as a research frontier for energy transduction and metabolism, and has enabled the reverse engineering of biomolecular machinery, delivering insights into how molecules 'walk' and track-based synthesisers operate, how the acceleration of chemical reactions enables energy to be transduced by catalysts (both motor proteins and synthetic catalysts), and how dynamic systems can be driven away from equilibrium through catalysis. The recognition of molecular ratchet mechanisms in biology, and their invention in synthetic systems, is proving significant in areas as diverse as supramolecular chemistry, systems chemistry, dynamic covalent chemistry, DNA nanotechnology, polymer and materials science, molecular biology, heterogeneous catalysis, endergonic synthesis, the origin of life, and many other branches of chemical science. Put simply, ratchet mechanisms give chemistry direction. Kinetic asymmetry, the key feature of ratcheting, is the dynamic counterpart of structural asymmetry (i.e. chirality). Given the ubiquity of ratchet mechanisms in endergonic chemical processes in biology, and their significance for behaviour and function from systems to synthesis, it is surely just as fundamentally important. This Review charts the recognition, invention and development of molecular ratchets, focussing particularly on the role for which they were originally envisaged in chemistry, as design elements for molecular machinery. Different kinetically asymmetric systems are compared, and the consequences of their dynamic behaviour discussed. These archetypal examples demonstrate how chemical systems can be driven inexorably away from equilibrium, rather than relax towards it.
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Affiliation(s)
- Stefan Borsley
- Department of Chemistry, The University of Manchester, Oxford Road, M13 9PL, Manchester, United Kingdom
| | - David A Leigh
- Department of Chemistry, The University of Manchester, Oxford Road, M13 9PL, Manchester, United Kingdom
| | - Benjamin M W Roberts
- Department of Chemistry, The University of Manchester, Oxford Road, M13 9PL, Manchester, United Kingdom
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5
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Borsley S, Gallagher JM, Leigh DA, Roberts BMW. Ratcheting synthesis. Nat Rev Chem 2024; 8:8-29. [PMID: 38102412 DOI: 10.1038/s41570-023-00558-y] [Citation(s) in RCA: 7] [Impact Index Per Article: 7.0] [Reference Citation Analysis] [Abstract] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Accepted: 11/02/2023] [Indexed: 12/17/2023]
Abstract
Synthetic chemistry has traditionally relied on reactions between reactants of high chemical potential and transformations that proceed energetically downhill to either a global or local minimum (thermodynamic or kinetic control). Catalysts can be used to manipulate kinetic control, lowering activation energies to influence reaction outcomes. However, such chemistry is still constrained by the shape of one-dimensional reaction coordinates. Coupling synthesis to an orthogonal energy input can allow ratcheting of chemical reaction outcomes, reminiscent of the ways that molecular machines ratchet random thermal motion to bias conformational dynamics. This fundamentally distinct approach to synthesis allows multi-dimensional potential energy surfaces to be navigated, enabling reaction outcomes that cannot be achieved under conventional kinetic or thermodynamic control. In this Review, we discuss how ratcheted synthesis is ubiquitous throughout biology and consider how chemists might harness ratchet mechanisms to accelerate catalysis, drive chemical reactions uphill and programme complex reaction sequences.
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Affiliation(s)
- Stefan Borsley
- Department of Chemistry, University of Manchester, Manchester, UK
| | | | - David A Leigh
- Department of Chemistry, University of Manchester, Manchester, UK.
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6
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Amano S, Borsley S, Leigh DA, Sun Z. Chemical engines: driving systems away from equilibrium through catalyst reaction cycles. NATURE NANOTECHNOLOGY 2021; 16:1057-1067. [PMID: 34625723 DOI: 10.1038/s41565-021-00975-4] [Citation(s) in RCA: 51] [Impact Index Per Article: 17.0] [Reference Citation Analysis] [Abstract] [Track Full Text] [Subscribe] [Scholar Register] [Received: 03/26/2021] [Accepted: 08/03/2021] [Indexed: 06/13/2023]
Abstract
Biological systems exhibit a range of complex functions at the micro- and nanoscales under non-equilibrium conditions (for example, transportation and motility, temporal control, information processing and so on). Chemists also employ out-of-equilibrium systems, for example in kinetic selection during catalysis, self-replication, dissipative self-assembly and synthetic molecular machinery, and in the form of chemical oscillators. Key to non-equilibrium behaviour are the mechanisms through which systems are able to extract energy from the chemical reactants ('fuel') that drive such processes. In this Perspective we relate different examples of such powering mechanisms using a common conceptual framework. We discuss how reaction cycles can be coupled to other dynamic processes through positive (acceleration) or negative (inhibition) catalysis to provide the thermodynamic impetus for diverse non-equilibrium behaviour, in effect acting as a 'chemical engine'. We explore the way in which the energy released from reaction cycles is harnessed through kinetic selection in a series of what have sometimes been considered somewhat disparate fields (systems chemistry, molecular machinery, dissipative assembly and chemical oscillators), highlight common mechanistic principles and the potential for the synchronization of chemical reaction cycles, and identify future challenges for the invention and application of non-equilibrium systems. Explicit recognition of the use of fuelling reactions to power structural change in catalysts may stimulate the investigation of known catalytic cycles as potential elements for chemical engines, a currently unexplored area of catalysis research.
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Affiliation(s)
- Shuntaro Amano
- Department of Chemistry, University of Manchester, Manchester, UK
| | - Stefan Borsley
- Department of Chemistry, University of Manchester, Manchester, UK
| | - David A Leigh
- Department of Chemistry, University of Manchester, Manchester, UK.
- School of Chemistry and Molecular Engineering, East China Normal University, Shanghai, China.
| | - Zhanhu Sun
- School of Chemistry and Molecular Engineering, East China Normal University, Shanghai, China
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7
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Feng Y, Ovalle M, Seale JSW, Lee CK, Kim DJ, Astumian RD, Stoddart JF. Molecular Pumps and Motors. J Am Chem Soc 2021; 143:5569-5591. [PMID: 33830744 DOI: 10.1021/jacs.0c13388] [Citation(s) in RCA: 108] [Impact Index Per Article: 36.0] [Reference Citation Analysis] [Abstract] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Indexed: 02/06/2023]
Abstract
Pumps and motors are essential components of the world as we know it. From the complex proteins that sustain our cells, to the mechanical marvels that power industries, much we take for granted is only possible because of pumps and motors. Although molecular pumps and motors have supported life for eons, it is only recently that chemists have made progress toward designing and building artificial forms of the microscopic machinery present in nature. The advent of artificial molecular machines has granted scientists an unprecedented level of control over the relative motion of components of molecules through the development of kinetically controlled, away-from-thermodynamic equilibrium chemistry. We outline the history of pumps and motors, focusing specifically on the innovations that enable the design and synthesis of the artificial molecular machines central to this Perspective. A key insight connecting biomolecular and artificial molecular machines is that the physical motions by which these machines carry out their function are unambiguously in mechanical equilibrium at every instant. The operation of molecular motors and pumps can be described by trajectory thermodynamics, a theory based on the work of Onsager, which is grounded on the firm foundation of the principle of microscopic reversibility. Free energy derived from thermodynamically non-equilibrium reactions kinetically favors some reaction pathways over others. By designing molecules with kinetic asymmetry, one can engineer potential landscapes to harness external energy to drive the formation and maintenance of geometries of component parts of molecules away-from-equilibrium, that would be impossible to achieve by standard synthetic approaches.
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Affiliation(s)
- Yuanning Feng
- Department of Chemistry, Northwestern University, 2145 Sheridan Road, Evanston, Illinois 60208, United States
| | - Marco Ovalle
- Department of Chemistry, Northwestern University, 2145 Sheridan Road, Evanston, Illinois 60208, United States
| | - James S W Seale
- Department of Chemistry, Northwestern University, 2145 Sheridan Road, Evanston, Illinois 60208, United States
| | - Christopher K Lee
- School of Chemistry, University of New South Wales, Sydney, NSW 2052, Australia
| | - Dong Jun Kim
- School of Chemistry, University of New South Wales, Sydney, NSW 2052, Australia
| | - R Dean Astumian
- Department of Physics, University of Maine, Orono, Maine 04469, United States
| | - J Fraser Stoddart
- Department of Chemistry, Northwestern University, 2145 Sheridan Road, Evanston, Illinois 60208, United States.,School of Chemistry, University of New South Wales, Sydney, NSW 2052, Australia.,Stoddart Institute of Molecular Science, Department of Chemistry, Zhejiang University, Hangzhou 310027, China.,ZJU-Hangzhou Global Scientific and Technological Innovation Center, Hangzhou 311215, China
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8
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Asato R, Martin CJ, Abid S, Gisbert Y, Asanoma F, Nakashima T, Kammerer C, Kawai T, Rapenne G. Molecular Rotor Functionalized with a Photoresponsive Brake. Inorg Chem 2021; 60:3492-3501. [DOI: 10.1021/acs.inorgchem.0c03330] [Citation(s) in RCA: 7] [Impact Index Per Article: 2.3] [Reference Citation Analysis] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Indexed: 12/14/2022]
Affiliation(s)
- Ryosuke Asato
- Division of Materials Science, Nara Institute of Science and Technology (NAIST), 8916-5 Takayama-cho, Ikoma, Nara 630-0192, Japan
- International Collaborative Laboratory for Supraphotoactive Systems, NAIST-CEMES, CNRS, UPR 8011, 29 rue Marvig, F-31055 Toulouse, Cedex 4, France
| | - Colin J. Martin
- International Collaborative Laboratory for Supraphotoactive Systems, NAIST-CEMES, CNRS, UPR 8011, 29 rue Marvig, F-31055 Toulouse, Cedex 4, France
| | - Seifallah Abid
- CEMES, Université de Toulouse, CNRS, 29 rue Marvig, F-31055 Toulouse, Cedex 4, France
| | - Yohan Gisbert
- CEMES, Université de Toulouse, CNRS, 29 rue Marvig, F-31055 Toulouse, Cedex 4, France
| | - Fumio Asanoma
- Division of Materials Science, Nara Institute of Science and Technology (NAIST), 8916-5 Takayama-cho, Ikoma, Nara 630-0192, Japan
| | - Takuya Nakashima
- Division of Materials Science, Nara Institute of Science and Technology (NAIST), 8916-5 Takayama-cho, Ikoma, Nara 630-0192, Japan
| | - Claire Kammerer
- CEMES, Université de Toulouse, CNRS, 29 rue Marvig, F-31055 Toulouse, Cedex 4, France
| | - Tsuyoshi Kawai
- Division of Materials Science, Nara Institute of Science and Technology (NAIST), 8916-5 Takayama-cho, Ikoma, Nara 630-0192, Japan
- International Collaborative Laboratory for Supraphotoactive Systems, NAIST-CEMES, CNRS, UPR 8011, 29 rue Marvig, F-31055 Toulouse, Cedex 4, France
| | - Gwénaël Rapenne
- Division of Materials Science, Nara Institute of Science and Technology (NAIST), 8916-5 Takayama-cho, Ikoma, Nara 630-0192, Japan
- International Collaborative Laboratory for Supraphotoactive Systems, NAIST-CEMES, CNRS, UPR 8011, 29 rue Marvig, F-31055 Toulouse, Cedex 4, France
- CEMES, Université de Toulouse, CNRS, 29 rue Marvig, F-31055 Toulouse, Cedex 4, France
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9
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Schaufelberger F, Seigel K, Ramström O. Hydrogen-Bond Catalysis of Imine Exchange in Dynamic Covalent Systems. Chemistry 2020; 26:15581-15588. [PMID: 32427370 DOI: 10.1002/chem.202001666] [Citation(s) in RCA: 7] [Impact Index Per Article: 1.8] [Reference Citation Analysis] [Abstract] [Key Words] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Received: 04/06/2020] [Indexed: 12/28/2022]
Abstract
The reversibility of imine bonds has been exploited to great effect in the field of dynamic covalent chemistry, with applications such as preparation of functional systems, dynamic materials, molecular machines, and covalent organic frameworks. However, acid catalysis is commonly needed for efficient equilibration of imine mixtures. Herein, it is demonstrated that hydrogen bond donors such as thioureas and squaramides can catalyze the equilibration of dynamic imine systems under unprecedentedly mild conditions. Catalysis occurs in a range of solvents and in the presence of many sensitive additives, showing moderate to good rate accelerations for both imine metathesis and transimination with amines, hydrazines, and hydroxylamines. Furthermore, the catalyst proved simple to immobilize, introducing both reusability and extended control of the equilibration process.
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Affiliation(s)
- Fredrik Schaufelberger
- Department of Chemistry, KTH-Royal Institute of Technology, Teknikringen 36, 10044, Stockholm, Sweden
| | - Karolina Seigel
- Department of Chemistry, KTH-Royal Institute of Technology, Teknikringen 36, 10044, Stockholm, Sweden
| | - Olof Ramström
- Department of Chemistry, KTH-Royal Institute of Technology, Teknikringen 36, 10044, Stockholm, Sweden.,Department of Chemistry, University of Massachusetts Lowell, One University Ave., Lowell, MA, 01854, USA.,Department of Chemistry and Biomedical Sciences, Linnaeus University, 39182, Kalmar, Sweden
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10
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Abstract
We report a new class of building blocks for Dynamic Combinatorial Chemistry (DCC) based on the pyrroloindole scaffold. The attachment of l-cysteine on the α, α′ positions of the core makes the molecule suitable for disulfide exchange in aqueous dynamic combinatorial libraries (DCLs). The synthesis of the core follows a modified version of the Knoevenagel–Hemetsberger approach. The new building block (l-PI) is fluorescent (Φ = 48%) and relatively stable towards thermal and photodegradation. The chirality of the cysteine is transferred to the electron-rich pyrroloindole core. Homo- and heterochiral DCLs of l-PI with electron-deficient l- and d-naphthalenediimide (NDI) lead to similar library distributions regardless of the enantiomer used. When no salt is present, the major component is a dimer, while dimers and tetramers are obtained at increased ionic strength.
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11
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Shejul DA, Wagalgave SM, Jadhav RW, Kobaisi MA, La DD, Jones LA, Bhosale RS, Bhosale SV, Bhosale SV. Aggregation-induced emission characteristics and solvent triggered hierarchical self-assembled chiral superstructures of naphthalenediimide amphiphiles. NEW J CHEM 2020. [DOI: 10.1039/c9nj05137f] [Citation(s) in RCA: 19] [Impact Index Per Article: 4.8] [Reference Citation Analysis] [Abstract] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Indexed: 01/04/2023]
Abstract
Herein, we report the design, synthesis and self-assembly of two naphthalene diimide amphiphiles NDI-TA1 and NDI-TA2 bearing acylated and deacylated hydroxyl groups of tartaric acid, respectively.
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Affiliation(s)
- Dipak A. Shejul
- Polymers and Functional Materials Division
- CSIR-Indian Institute of Chemical Technology
- Hyderabad 500007
- India
| | - Sopan M. Wagalgave
- Polymers and Functional Materials Division
- CSIR-Indian Institute of Chemical Technology
- Hyderabad 500007
- India
- Academy of Scientific and Innovative Research (AcSIR)
| | - Ratan W. Jadhav
- School of Chemical Sciences
- Goa University
- Taleigao Plateau
- India
| | - Mohammad Al Kobaisi
- School of Science
- Faculty of Science
- Engineering and Technology
- Swinburne University of Technology
- Hawthorn
| | - Duong Duc La
- Institute of Chemistry and Materials
- Hoang Sam
- Vietnam
| | | | | | - Sidhanath V. Bhosale
- Polymers and Functional Materials Division
- CSIR-Indian Institute of Chemical Technology
- Hyderabad 500007
- India
- Academy of Scientific and Innovative Research (AcSIR)
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12
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Pattillo CC, Moore JS. A tetrahedral molecular cage with a responsive vertex. Chem Sci 2019; 10:7043-7048. [PMID: 31588271 PMCID: PMC6676470 DOI: 10.1039/c9sc02047k] [Citation(s) in RCA: 13] [Impact Index Per Article: 2.6] [Reference Citation Analysis] [Abstract] [Track Full Text] [Download PDF] [Figures] [Journal Information] [Subscribe] [Scholar Register] [Received: 04/25/2019] [Accepted: 06/09/2019] [Indexed: 12/27/2022] Open
Abstract
Dynamic covalent chemistry (DCC) is a widely used method for the self-assembly of three-dimensional molecular architectures. The orthogonality of dynamic reactions is emerging as a versatile strategy for controlling product distributions in DCC, yet the application of this approach to the synthesis of 3D organic molecular cages is limited. We report the first system which employs the orthogonality of alkyne metathesis and dynamic imine exchange to prepare a molecular cage with a reversibly removable vertex. This study demonstrates the rational and controlled application of chemical orthogonality in DCC to prepare organic cages of expanded functionality which respond to chemical stimuli.
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Affiliation(s)
- Christopher C Pattillo
- Department of Chemistry , University of Illinois at Urbana-Champaign , Urbana , Illinois 61801 , USA .
| | - Jeffrey S Moore
- Department of Chemistry , University of Illinois at Urbana-Champaign , Urbana , Illinois 61801 , USA .
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13
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Reuther JF, Dahlhauser SD, Anslyn EV. Tunable Orthogonal Reversible Covalent (TORC) Bonds: Dynamic Chemical Control over Molecular Assembly. Angew Chem Int Ed Engl 2019; 58:74-85. [PMID: 30098086 PMCID: PMC10851707 DOI: 10.1002/anie.201808371] [Citation(s) in RCA: 83] [Impact Index Per Article: 16.6] [Reference Citation Analysis] [Abstract] [Key Words] [MESH Headings] [Grants] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Received: 07/21/2018] [Indexed: 11/08/2022]
Abstract
Dynamic assembly of macromolecules in biological systems is one of the fundamental processes that facilitates life. Although such assembly most commonly uses noncovalent interactions, a set of dynamic reactions involving reversible covalent bonding is actively being exploited for the design of functional materials, bottom-up assembly, and molecular machines. This Minireview highlights recent implementations and advancements in the area of tunable orthogonal reversible covalent (TORC) bonds for these purposes, and provides an outlook for their expansion, including the development of synthetically encoded polynucleotide mimics.
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Affiliation(s)
- James F. Reuther
- Department of Chemistry, University of Texas at Austin Austin, TX (USA)
- Department of Chemistry, University of Massachusetts Lowell, Lowell, MA (USA)
| | | | - Eric V. Anslyn
- Department of Chemistry, University of Texas at Austin Austin, TX (USA)
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14
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Elemans JAAW, Nolte RJM. Porphyrin cage compounds based on glycoluril – from enzyme mimics to functional molecular machines. Chem Commun (Camb) 2019; 55:9590-9605. [DOI: 10.1039/c9cc04372a] [Citation(s) in RCA: 34] [Impact Index Per Article: 6.8] [Reference Citation Analysis] [Abstract] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Indexed: 12/18/2022]
Abstract
This Feature Article gives an overview of the application of glycoluril-based porphyrin cage compounds in host–guest chemistry, allosterically controlled self-assembly, biomimetic catalysis, and polymer encoding.
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Affiliation(s)
| | - Roeland J. M. Nolte
- Radboud University
- Institute for Molecules and Materials
- 6525 AJ Nijmegen
- The Netherlands
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15
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Hosoya T, Yoshida S, Nishiyama Y, Misawa Y, Hazama Y, Oya K. Synthesis of Diverse 3-Azido-5-(azidomethyl)benzene Derivatives via Formal C–H Azidation and Functional Group-Selective Transformations. HETEROCYCLES 2019. [DOI: 10.3987/com-18-s(f)72] [Citation(s) in RCA: 3] [Impact Index Per Article: 0.6] [Reference Citation Analysis] [Track Full Text] [Journal Information] [Submit a Manuscript] [Subscribe] [Scholar Register] [Indexed: 11/19/2022]
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16
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Orrillo AG, Escalante AM, Martinez-Amezaga M, Cabezudo I, Furlan RLE. Molecular Networks in Dynamic Multilevel Systems. Chemistry 2018; 25:1118-1127. [DOI: 10.1002/chem.201804143] [Citation(s) in RCA: 22] [Impact Index Per Article: 3.7] [Reference Citation Analysis] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Received: 08/14/2018] [Revised: 09/17/2018] [Indexed: 11/07/2022]
Affiliation(s)
- A. Gastón Orrillo
- Farmacognosia, Facultad de Ciencias Bioquímicas y Farmacéuticas; Universidad Nacional de Rosario-CONICET; S2002LRK Rosario Argentina
| | - Andrea M. Escalante
- Farmacognosia, Facultad de Ciencias Bioquímicas y Farmacéuticas; Universidad Nacional de Rosario-CONICET; S2002LRK Rosario Argentina
| | - Maitena Martinez-Amezaga
- Farmacognosia, Facultad de Ciencias Bioquímicas y Farmacéuticas; Universidad Nacional de Rosario-CONICET; S2002LRK Rosario Argentina
| | - Ignacio Cabezudo
- Farmacognosia, Facultad de Ciencias Bioquímicas y Farmacéuticas; Universidad Nacional de Rosario-CONICET; S2002LRK Rosario Argentina
| | - Ricardo L. E. Furlan
- Farmacognosia, Facultad de Ciencias Bioquímicas y Farmacéuticas; Universidad Nacional de Rosario-CONICET; S2002LRK Rosario Argentina
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17
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Reuther JF, Dahlhauser SD, Anslyn EV. Einstellbare orthogonale reversible kovalente Bindungen: dynamische Kontrolle über die molekulare Selbstorganisation. Angew Chem Int Ed Engl 2018. [DOI: 10.1002/ange.201808371] [Citation(s) in RCA: 22] [Impact Index Per Article: 3.7] [Reference Citation Analysis] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Indexed: 12/14/2022]
Affiliation(s)
- James F. Reuther
- Department of Chemistry University of Texas at Austin Austin TX USA
- Department of Chemistry University of Massachusetts Lowell Lowell MA USA
| | | | - Eric V. Anslyn
- Department of Chemistry University of Texas at Austin Austin TX USA
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18
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Chen J, Li X, Li J, Li J, Huang L, Ren T, Yang X, Zhong S. Assembling of stimuli-responsive tumor targeting polypyrrole nanotubes drug carrier system for controlled release. MATERIALS SCIENCE & ENGINEERING. C, MATERIALS FOR BIOLOGICAL APPLICATIONS 2018; 89:316-327. [DOI: 10.1016/j.msec.2018.04.031] [Citation(s) in RCA: 10] [Impact Index Per Article: 1.7] [Reference Citation Analysis] [Track Full Text] [Subscribe] [Scholar Register] [Received: 06/23/2017] [Revised: 03/03/2018] [Accepted: 04/12/2018] [Indexed: 11/29/2022]
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19
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Yang X, Shi D, Zhu S, Wang B, Zhang X, Wang G. Portable Aptasensor of Aflatoxin B1 in Bread Based on a Personal Glucose Meter and DNA Walking Machine. ACS Sens 2018; 3:1368-1375. [PMID: 29943575 DOI: 10.1021/acssensors.8b00304] [Citation(s) in RCA: 65] [Impact Index Per Article: 10.8] [Reference Citation Analysis] [Abstract] [Key Words] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Indexed: 11/28/2022]
Abstract
Despite some recent developments on the portable on-site sensor of Aflatoxin B1 (AFB1), the complex and expensive preparation of recognition elements have still limited their wide applications. In this paper, using the fast, low-cost, and stable recognition of aptamer DNA-AFB1, a portable aptasensor was constructed for the on-site detection of AFB1 in food matrixes, with the readout of personal glucose meter (PGM) and DNA walking machine for signal probe separation. In such an assay protocol, the target could trigger the DNA walker to autonomously move on the electrode surface, propelled by unidirectional Pb2+-specific DNAzyme digestion, which could amplify the signal and separate the signal probe as well for further quantification by the PGM. Under optimized conditions, the increase of PGM signal was relative with the concentration of AFB1 ranging from 0.02 to 10 nM and the low limit of detection (LOD) was 10 pM (S/N = 3). With the features of portability, and cheapness, the presented user-friendly method could be extended to various other analytes for wide point-of-care applications.
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Affiliation(s)
- Xinsheng Yang
- Key Laboratory of Chem-Biosensing, Anhui Province; Key Laboratory of Functional Molecular Solids, Anhui Province; College of Chemistry and Materials Science, Anhui Normal University, Wuhu 241000, P. R. China
| | - Dongmin Shi
- Key Laboratory of Chem-Biosensing, Anhui Province; Key Laboratory of Functional Molecular Solids, Anhui Province; College of Chemistry and Materials Science, Anhui Normal University, Wuhu 241000, P. R. China
| | - Shengmei Zhu
- Key Laboratory of Chem-Biosensing, Anhui Province; Key Laboratory of Functional Molecular Solids, Anhui Province; College of Chemistry and Materials Science, Anhui Normal University, Wuhu 241000, P. R. China
| | - Baojuan Wang
- Institute of Molecular Biology and Biotechnology and Anhui Provincial Key Laboratory of the Conservation and Exploitation of Biological Resources, College of Life Sciences, Anhui Normal University, Wuhu 241000, P. R. China
| | - Xiaojun Zhang
- Key Laboratory of Chem-Biosensing, Anhui Province; Key Laboratory of Functional Molecular Solids, Anhui Province; College of Chemistry and Materials Science, Anhui Normal University, Wuhu 241000, P. R. China
| | - Guangfeng Wang
- Key Laboratory of Chem-Biosensing, Anhui Province; Key Laboratory of Functional Molecular Solids, Anhui Province; College of Chemistry and Materials Science, Anhui Normal University, Wuhu 241000, P. R. China
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20
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Ershov AY, Vasil’eva MY, Lagoda IV, Baigil’din VA, Nasledov DG, Kuleshova LY, Yakimanskii AV. Condensation Products of D-Ribose with Thiol-Containing Hydrazides and Gold Glyconanoparticles Thereof. RUSS J GEN CHEM+ 2018. [DOI: 10.1134/s1070363218010164] [Citation(s) in RCA: 12] [Impact Index Per Article: 2.0] [Reference Citation Analysis] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Indexed: 11/23/2022]
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21
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Devine J, Jack MW. Self-induced temperature gradients in Brownian dynamics. Phys Rev E 2018; 96:062130. [PMID: 29347298 DOI: 10.1103/physreve.96.062130] [Citation(s) in RCA: 1] [Impact Index Per Article: 0.2] [Reference Citation Analysis] [Abstract] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Received: 08/24/2017] [Indexed: 11/07/2022]
Abstract
Brownian systems often surmount energy barriers by absorbing and emitting heat to and from their local environment. Usually, the temperature gradients created by this heat exchange are assumed to dissipate instantaneously. Here we relax this assumption to consider the case where Brownian dynamics on a time-independent potential can lead to self-induced temperature gradients. In the same way that externally imposed temperature gradients can cause directed motion, these self-induced gradients affect the dynamics of the Brownian system. The result is a coupling between the local environment and the Brownian subsystem. We explore the resulting dynamics and thermodynamics of these coupled systems and develop a robust method for numerical simulation. In particular, by focusing on one-dimensional situations, we show that self-induced temperature gradients reduce barrier-crossing rates. We also consider a heat engine and a heat pump based on temperature gradients induced by a Brownian system in a nonequilibrium potential.
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Affiliation(s)
- Jack Devine
- Department of Physics, University of Otago, Dunedin, New Zealand
| | - M W Jack
- Department of Physics, University of Otago, Dunedin, New Zealand
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22
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Bamberger D, Hobernik D, Konhäuser M, Bros M, Wich PR. Surface Modification of Polysaccharide-Based Nanoparticles with PEG and Dextran and the Effects on Immune Cell Binding and Stimulatory Characteristics. Mol Pharm 2017; 14:4403-4416. [DOI: 10.1021/acs.molpharmaceut.7b00507] [Citation(s) in RCA: 32] [Impact Index Per Article: 4.6] [Reference Citation Analysis] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Indexed: 02/06/2023]
Affiliation(s)
- Denise Bamberger
- Department
of Pharmacy and Biochemistry, Johannes Gutenberg-University Mainz, Staudingerweg
5, 55128 Mainz, Germany
| | - Dominika Hobernik
- Department
of Dermatology, University Medical Center, Johannes Gutenberg-University Mainz, Obere Zahlbacher Straße 63, 55131 Mainz, Germany
| | - Matthias Konhäuser
- Department
of Pharmacy and Biochemistry, Johannes Gutenberg-University Mainz, Staudingerweg
5, 55128 Mainz, Germany
| | - Matthias Bros
- Department
of Dermatology, University Medical Center, Johannes Gutenberg-University Mainz, Obere Zahlbacher Straße 63, 55131 Mainz, Germany
| | - Peter R. Wich
- Department
of Pharmacy and Biochemistry, Johannes Gutenberg-University Mainz, Staudingerweg
5, 55128 Mainz, Germany
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23
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Martin CJ, Lee ATL, Adams RW, Leigh DA. Enzyme-Mediated Directional Transport of a Small-Molecule Walker With Chemically Identical Feet. J Am Chem Soc 2017; 139:11998-12002. [PMID: 28762738 PMCID: PMC5618142 DOI: 10.1021/jacs.7b06503] [Citation(s) in RCA: 13] [Impact Index Per Article: 1.9] [Reference Citation Analysis] [Abstract] [Track Full Text] [Download PDF] [Figures] [Journal Information] [Subscribe] [Scholar Register] [Indexed: 12/31/2022]
Abstract
We describe a small-molecule "walker" that uses enzyme catalysis to discriminate between the relative positions of its "feet" on a track and thereby move with net directionality. The bipedal walker has identical carboxylic acid feet, and "steps" along an isotactic hydroxyl-group-derivatized polyether track by the formation/breakage of ester linkages. Lipase AS catalyzes the selective hydrolysis of the rear foot of macrocyclized walkers (an information ratchet mechanism), the rear foot producing an (R)-stereocenter at its point of attachment to the track. If the hydrolyzed foot reattaches to the track in front of the bound foot it forms an (S)-stereocenter, which is resistant to enzymatic hydrolysis. Only macrocyclic walker-track conjugates are efficiently hydrolyzed by the enzyme, leading to high processivity of the walker movement along the track. Conventional chemical reagents promote formation of the ester bonds between the walker and the track. Iterative macrocyclization and hydrolysis reactions lead to 68% of walkers taking two steps directionally along a three-foothold track.
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Affiliation(s)
- Christopher J Martin
- School of Chemistry, University of Manchester , Oxford Road, Manchester M13 9PL, United Kingdom
| | - Alan T L Lee
- School of Chemistry, University of Manchester , Oxford Road, Manchester M13 9PL, United Kingdom
| | - Ralph W Adams
- School of Chemistry, University of Manchester , Oxford Road, Manchester M13 9PL, United Kingdom
| | - David A Leigh
- School of Chemistry, University of Manchester , Oxford Road, Manchester M13 9PL, United Kingdom
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24
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Wang X, Wicher B, Ferrand Y, Huc I. Orchestrating Directional Molecular Motions: Kinetically Controlled Supramolecular Pathways of a Helical Host on Rodlike Guests. J Am Chem Soc 2017; 139:9350-9358. [DOI: 10.1021/jacs.7b04884] [Citation(s) in RCA: 25] [Impact Index Per Article: 3.6] [Reference Citation Analysis] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Indexed: 12/18/2022]
Affiliation(s)
- Xiang Wang
- CBMN Laboratory, University of Bordeaux,
CNRS, IPB, Institut Européen de Chimie Biologie, 2 rue Escarpit 33607 Pessac, France
| | - Barbara Wicher
- CBMN Laboratory, University of Bordeaux,
CNRS, IPB, Institut Européen de Chimie Biologie, 2 rue Escarpit 33607 Pessac, France
| | - Yann Ferrand
- CBMN Laboratory, University of Bordeaux,
CNRS, IPB, Institut Européen de Chimie Biologie, 2 rue Escarpit 33607 Pessac, France
| | - Ivan Huc
- CBMN Laboratory, University of Bordeaux,
CNRS, IPB, Institut Européen de Chimie Biologie, 2 rue Escarpit 33607 Pessac, France
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25
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Matysiak BM, Nowak P, Cvrtila I, Pappas CG, Liu B, Komáromy D, Otto S. Antiparallel Dynamic Covalent Chemistries. J Am Chem Soc 2017; 139:6744-6751. [PMID: 28440073 PMCID: PMC5438195 DOI: 10.1021/jacs.7b02575] [Citation(s) in RCA: 38] [Impact Index Per Article: 5.4] [Reference Citation Analysis] [Abstract] [Track Full Text] [Download PDF] [Figures] [Journal Information] [Subscribe] [Scholar Register] [Indexed: 12/31/2022]
Abstract
The ability to design reaction networks with high, but addressable complexity is a necessary prerequisite to make advanced functional chemical systems. Dynamic combinatorial chemistry has proven to be a useful tool in achieving complexity, however with some limitations in controlling it. Herein we introduce the concept of antiparallel chemistries, in which the same functional group can be channeled into one of two reversible chemistries depending on a controllable parameter. Such systems allow both for achieving complexity, by combinatorial chemistry, and addressing it, by switching from one chemistry to another by controlling an external parameter. In our design the two antiparallel chemistries are thiol-disulfide exchange and thio-Michael addition, sharing the thiol as the common building block. By means of oxidation and reduction the system can be reversibly switched from predominantly thio-Michael chemistry to predominantly disulfide chemistry, as well as to any intermediate state. Both chemistries operate in water, at room temperature, and at mildly basic pH, which makes them a suitable platform for further development of systems chemistry.
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Affiliation(s)
- Bartosz M Matysiak
- Centre for Systems Chemistry, Stratingh Institute, University of Groningen , Nijenborgh 4, 9747 AG Groningen, The Netherlands.,Faculty of Chemistry, University of Warsaw , Pasteura 1, 02-093 Warsaw, Poland
| | - Piotr Nowak
- Centre for Systems Chemistry, Stratingh Institute, University of Groningen , Nijenborgh 4, 9747 AG Groningen, The Netherlands
| | - Ivica Cvrtila
- Centre for Systems Chemistry, Stratingh Institute, University of Groningen , Nijenborgh 4, 9747 AG Groningen, The Netherlands
| | - Charalampos G Pappas
- Centre for Systems Chemistry, Stratingh Institute, University of Groningen , Nijenborgh 4, 9747 AG Groningen, The Netherlands
| | - Bin Liu
- Centre for Systems Chemistry, Stratingh Institute, University of Groningen , Nijenborgh 4, 9747 AG Groningen, The Netherlands
| | - Dávid Komáromy
- Centre for Systems Chemistry, Stratingh Institute, University of Groningen , Nijenborgh 4, 9747 AG Groningen, The Netherlands
| | - Sijbren Otto
- Centre for Systems Chemistry, Stratingh Institute, University of Groningen , Nijenborgh 4, 9747 AG Groningen, The Netherlands
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26
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Hoff EA, Abel BA, Tretbar CA, McCormick CL, Patton DL. Aqueous RAFT at pH zero: enabling controlled polymerization of unprotected acyl hydrazide methacrylamides. Polym Chem 2017. [DOI: 10.1039/c6py01563h] [Citation(s) in RCA: 12] [Impact Index Per Article: 1.7] [Reference Citation Analysis] [Abstract] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Indexed: 01/07/2023]
Abstract
A first example of controlled radical polymerization of monomers containing unprotected acyl hydrazide pendent groups was demonstrated using aqueous RAFT polymerization at pH = 0.
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Affiliation(s)
- Emily A. Hoff
- School of Polymers and High Performance Materials. The University of Southern Mississippi
- Hattiesburg
- USA
| | - Brooks A. Abel
- School of Polymers and High Performance Materials. The University of Southern Mississippi
- Hattiesburg
- USA
| | - Chase A. Tretbar
- School of Polymers and High Performance Materials. The University of Southern Mississippi
- Hattiesburg
- USA
| | - Charles L. McCormick
- School of Polymers and High Performance Materials. The University of Southern Mississippi
- Hattiesburg
- USA
| | - Derek L. Patton
- School of Polymers and High Performance Materials. The University of Southern Mississippi
- Hattiesburg
- USA
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27
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Kassem S, van Leeuwen T, Lubbe AS, Wilson MR, Feringa BL, Leigh DA. Artificial molecular motors. Chem Soc Rev 2017; 46:2592-2621. [DOI: 10.1039/c7cs00245a] [Citation(s) in RCA: 539] [Impact Index Per Article: 77.0] [Reference Citation Analysis] [Abstract] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Indexed: 12/14/2022]
Abstract
Artificial molecular motors take inspiration from motor proteins, nature's solution for achieving directional molecular level motion. An overview is given of the principal designs of artificial molecular motors and their modes of operation. We identify some key challenges remaining in the field.
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Affiliation(s)
- Salma Kassem
- School of Chemistry
- University of Manchester
- Manchester
- UK
| | - Thomas van Leeuwen
- Stratingh Institute for Chemistry
- University of Groningen
- 9747 AG Groningen
- The Netherlands
| | - Anouk S. Lubbe
- Stratingh Institute for Chemistry
- University of Groningen
- 9747 AG Groningen
- The Netherlands
| | | | - Ben L. Feringa
- Stratingh Institute for Chemistry
- University of Groningen
- 9747 AG Groningen
- The Netherlands
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28
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Ono K, Tohyama Y, Uchikura T, Kikuchi Y, Fujii K, Uekusa H, Iwasawa N. Control of the reversibility during boronic ester formation: application to the construction of ferrocene dimers and trimers. Dalton Trans 2017; 46:2370-2376. [DOI: 10.1039/c6dt04845e] [Citation(s) in RCA: 4] [Impact Index Per Article: 0.6] [Reference Citation Analysis] [Abstract] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Indexed: 11/21/2022]
Abstract
Equilibration of boronic esters during boronic ester formation was controlled using protic or aprotic solvents under neutral conditions.
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Affiliation(s)
- Kosuke Ono
- Department of Chemistry
- Tokyo Institute of Technology
- Tokyo 152-8551
- Japan
| | - Yohei Tohyama
- Department of Chemistry
- Tokyo Institute of Technology
- Tokyo 152-8551
- Japan
| | | | - Yuji Kikuchi
- Department of Chemistry
- Tokyo Institute of Technology
- Tokyo 152-8551
- Japan
| | - Kotaro Fujii
- Department of Chemistry
- Tokyo Institute of Technology
- Tokyo 152-8551
- Japan
| | - Hidehiro Uekusa
- Department of Chemistry
- Tokyo Institute of Technology
- Tokyo 152-8551
- Japan
| | - Nobuharu Iwasawa
- Department of Chemistry
- Tokyo Institute of Technology
- Tokyo 152-8551
- Japan
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29
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Scottwell SØ, Crowley JD. Ferrocene-containing non-interlocked molecular machines. Chem Commun (Camb) 2016; 52:2451-64. [DOI: 10.1039/c5cc09569g] [Citation(s) in RCA: 68] [Impact Index Per Article: 8.5] [Reference Citation Analysis] [Abstract] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Indexed: 12/13/2022]
Abstract
Ferrocene is chemically robust and readily functionalized which enables its facile incorporation into more complex molecular systems. This coupled with ferrocene's reversible redox properties and ability to function as a “molecular ball bearing” has led to the use of ferrocene as a component in wide range of non-interlocked synthetic molecular machine systems.
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30
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Pick-up, transport and release of a molecular cargo using a small-molecule robotic arm. Nat Chem 2015; 8:138-43. [PMID: 26791896 DOI: 10.1038/nchem.2410] [Citation(s) in RCA: 129] [Impact Index Per Article: 14.3] [Reference Citation Analysis] [Abstract] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Received: 05/10/2015] [Accepted: 10/23/2015] [Indexed: 12/24/2022]
Abstract
Modern-day factory assembly lines often feature robots that pick up, reposition and connect components in a programmed manner. The idea of manipulating molecular fragments in a similar way has to date only been explored using biological building blocks (specifically DNA). Here, we report on a wholly artificial small-molecule robotic arm capable of selectively transporting a molecular cargo in either direction between two spatially distinct, chemically similar, sites on a molecular platform. The arm picks up/releases a 3-mercaptopropanehydrazide cargo by formation/breakage of a disulfide bond, while dynamic hydrazone chemistry controls the cargo binding to the platform. Transport is controlled by selectively inducing conformational and configurational changes within an embedded hydrazone rotary switch that steers the robotic arm. In a three-stage operation, 79-85% of 3-mercaptopropanehydrazide molecules are transported in either (chosen) direction between the two platform sites, without the cargo at any time fully dissociating from the machine nor exchanging with other molecules in the bulk.
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31
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Nishiyama J, Makita Y, Kihara N, Takata T. Acylative Uni-directional Transport on Level Periodic Potential Surface Using a Rotaxane Platform with a Isopropylidene Separator. CHEM LETT 2015. [DOI: 10.1246/cl.150708] [Citation(s) in RCA: 6] [Impact Index Per Article: 0.7] [Reference Citation Analysis] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Indexed: 11/13/2022]
Affiliation(s)
- Junya Nishiyama
- Department of Chemistry, Faculty of Science, Kanagawa University
| | | | - Nobuhiro Kihara
- Department of Chemistry, Faculty of Science, Kanagawa University
| | - Toshikazu Takata
- Department of Organic and Polymeric Materials, Tokyo Institute of Technology
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32
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Affiliation(s)
- Sundus Erbas-Cakmak
- School of Chemistry, University of Manchester, Oxford Road, Manchester M13 9PL, United Kingdom
| | - David A. Leigh
- School of Chemistry, University of Manchester, Oxford Road, Manchester M13 9PL, United Kingdom
| | - Charlie T. McTernan
- School of Chemistry, University of Manchester, Oxford Road, Manchester M13 9PL, United Kingdom
| | - Alina
L. Nussbaumer
- School of Chemistry, University of Manchester, Oxford Road, Manchester M13 9PL, United Kingdom
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33
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Wang L, Deng R, Li J. Target-fueled DNA walker for highly selective miRNA detection. Chem Sci 2015; 6:6777-6782. [PMID: 28757969 PMCID: PMC5508657 DOI: 10.1039/c5sc02784e] [Citation(s) in RCA: 112] [Impact Index Per Article: 12.4] [Reference Citation Analysis] [Abstract] [Track Full Text] [Download PDF] [Figures] [Journal Information] [Subscribe] [Scholar Register] [Received: 07/29/2015] [Accepted: 09/10/2015] [Indexed: 12/16/2022] Open
Abstract
We report a DNA walking biosensor that can realize the detection of let-7a with a detection limit of 58 fM and high selectivity for resolving one nucleotide variation.
Artificial DNA motifs as architectural scaffolds have been widely used to assemble a variety of nanoscale devices. Synthetic DNA nanostructures have accomplished mechanical switching in response to external stimuli, suggesting the promise of constructing a walking device that is being used in the field of biosensors. Here, we design a novel miRNA-responsive DNA walker biosensor based on strand displacement cascades and an enzymatic recycling cleavage strategy. By using miRNA as a driving force, the DNA walkers can be activated to move along the track and generate specific signals for let-7a with a high signal-to-noise ratio. This biosensor exhibits excellent analytical performance toward the sensing of let-7a with great specificity for resolving one nucleotide variation and a detection limit of 58 fM. Such an ultraselective sensor shows that DNA nanostructures have great potential in providing platforms for applications in the fields of biosensing, clinical diagnostics and environmental sample analysis.
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Affiliation(s)
- Lida Wang
- Department of Chemistry , Beijing Key Laboratory for Microanalytical Methods and Instrumentation , Tsinghua University , Beijing 100084 , China .
| | - Ruijie Deng
- Department of Chemistry , Beijing Key Laboratory for Microanalytical Methods and Instrumentation , Tsinghua University , Beijing 100084 , China .
| | - Jinghong Li
- Department of Chemistry , Beijing Key Laboratory for Microanalytical Methods and Instrumentation , Tsinghua University , Beijing 100084 , China .
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34
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Xu Z, Dong Y, Li J, Yuan R. A ferrocene-switched electrochemiluminescence "off-on" strategy for the sensitive detection of cardiac troponin I based on target transduction and a DNA walking machine. Chem Commun (Camb) 2015; 51:14369-72. [PMID: 26268812 DOI: 10.1039/c5cc04745e] [Citation(s) in RCA: 21] [Impact Index Per Article: 2.3] [Reference Citation Analysis] [Abstract] [Journal Information] [Subscribe] [Scholar Register] [Indexed: 01/15/2023]
Abstract
A ferrocene-switched electrochemiluminescence "off-on" sensor is proposed on the basis of target transduction and a DNA walking machine for the sensitive detection of cardiac troponin I (cTnI). The proposed method offers high selectivity with a low detection limit of 0.016 pg mL(-1), and provides a universal platform for detecting a wide range of targets, including other proteins and DNAs, by changing the molecular recognition elements to the corresponding antibodies, aptamers or DNA probes.
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Affiliation(s)
- Ziqi Xu
- Key Laboratory on Luminescence and Real-Time Analytical Chemistry, Ministry of Education, School of Chemistry and Chemical Engineering, Southwest University, Chongqing 400715, P. R. China.
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35
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Wilson H, Byrne S, Mullen KM. Dynamic Covalent Synthesis of Donor-Acceptor Interlocked Architectures in Solution and at the Solution:Surface Interface. Chem Asian J 2015; 10:715-21. [DOI: 10.1002/asia.201403288] [Citation(s) in RCA: 12] [Impact Index Per Article: 1.3] [Reference Citation Analysis] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Received: 11/12/2014] [Indexed: 11/06/2022]
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36
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Hattori Y, Nishikawa M, Kusamoto T, Kume S, Nishihara H. Steric Interference on the Redox-conjugated Pyrimidine Ring Rotation of Mono- and Dinuclear Copper Complexes with (4-Methyl-2-pyrimidinyl)imine Ligands. CHEM LETT 2014. [DOI: 10.1246/cl.140238] [Citation(s) in RCA: 3] [Impact Index Per Article: 0.3] [Reference Citation Analysis] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Indexed: 02/03/2023]
Affiliation(s)
- Yohei Hattori
- Department of Chemistry, Graduate School of Science, The University of Tokyo
| | - Michihiro Nishikawa
- Department of Chemistry, Graduate School of Science, The University of Tokyo
| | - Tetsuro Kusamoto
- Department of Chemistry, Graduate School of Science, The University of Tokyo
| | - Shoko Kume
- Department of Chemistry, Graduate School of Science, The University of Tokyo
| | - Hiroshi Nishihara
- Department of Chemistry, Graduate School of Science, The University of Tokyo
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37
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Ohtake T, Tanaka H, Matsumoto T, Kimura M, Ohta A. Redox-Driven Molecular Switches Consisting of Bis(benzodithiolyl)bithienyl Scaffold and Mesogenic Moieties: Synthesis and Complexes with Liquid Crystalline Polymer. J Org Chem 2014; 79:6590-602. [DOI: 10.1021/jo501072u] [Citation(s) in RCA: 17] [Impact Index Per Article: 1.7] [Reference Citation Analysis] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Indexed: 01/16/2023]
Affiliation(s)
- Toshihiro Ohtake
- Seiko Epson Corporation, 281
Fujimi, Fujimi-machi, Suwa-gun, Nagano 399-0293, Japan
| | - Hideki Tanaka
- Seiko Epson Corporation, 281
Fujimi, Fujimi-machi, Suwa-gun, Nagano 399-0293, Japan
| | - Tetsuro Matsumoto
- Seiko Epson Corporation, 281
Fujimi, Fujimi-machi, Suwa-gun, Nagano 399-0293, Japan
| | - Mutsumi Kimura
- Division
of Chemistry and Materials, Faculty of Textile Science and Technology, Shinshu University, Ueda, Nagano 386-8567, Japan
| | - Akira Ohta
- Department
of Chemistry, Faculty of Science, Shinshu University, Matsumoto, Nagano 390-8621, Japan
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38
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4,4′‐Bipyridine as a Unidirectional Switching Unit for a Molecular Pushing Motor. Chemistry 2014; 20:6358-65. [DOI: 10.1002/chem.201304166] [Citation(s) in RCA: 8] [Impact Index Per Article: 0.8] [Reference Citation Analysis] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Received: 10/24/2013] [Revised: 02/21/2014] [Indexed: 11/07/2022]
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39
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Sun CY, Dou S, Du JZ, Yang XZ, Li YP, Wang J. Doxorubicin conjugate of poly(ethylene glycol)-block-polyphosphoester for cancer therapy. Adv Healthc Mater 2014; 3:261-72. [PMID: 23852934 DOI: 10.1002/adhm.201300091] [Citation(s) in RCA: 60] [Impact Index Per Article: 6.0] [Reference Citation Analysis] [Abstract] [Key Words] [MESH Headings] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Received: 03/13/2013] [Indexed: 12/22/2022]
Abstract
Polyphosphoesters with repeating phosphoester linkages in the backbone can be easily functionalized, are biodegradable and potentially biocompatible, and may be potential candidates as polymer carriers of drug conjugates. Here, the efficacy of a polyphosphoester drug conjugate as an anticancer agent in vivo is assessed for the first time. With controlled synthesis, doxorubicin conjugated to poly(ethylene glycol)-block-polyphosphoester (PPEH-DOX) via labile hydrazone bonds form spherical nanoparticles in aqueous solution with an average diameter of ≈60 nm. These nanoparticles are effectively internalized by MDA-MB-231 breast cancer cells and release the conjugated doxorubicin in response to the intracellular pH of endosomes and lysosomes, resulting in significant antiproliferative activity in cancer cells. Compared with free doxorubicin injection, PPEH-DOX injection exhibits much longer circulation behavior in the plasma of mice and leads to enhanced drug accumulation in tumor cells. In an MDA-MB-231 xenograft murine model, inhibition of tumor growth with systemic delivery of PPEH-DOX nanoparticles is more pronounced compared with free doxorubicin injection, suggesting the potential of polyphosphoesters as carriers of drug conjugates in cancer therapy.
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Affiliation(s)
- Chun-Yang Sun
- Hefei National Laboratory for Physical Sciences at the Microscale and School of Life Sciences, University of Science and Technology of China, Hefei, Anhui 230027, P.R. China
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Beves JE, Blanco V, Blight BA, Carrillo R, D'Souza DM, Howgego D, Leigh DA, Slawin AMZ, Symes MD. Toward metal complexes that can directionally walk along tracks: controlled stepping of a molecular biped with a palladium(II) foot. J Am Chem Soc 2014; 136:2094-100. [PMID: 24446768 DOI: 10.1021/ja4123973] [Citation(s) in RCA: 42] [Impact Index Per Article: 4.2] [Reference Citation Analysis] [Abstract] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Indexed: 12/25/2022]
Abstract
We report on the design, synthesis, and operation of a bimetallic molecular biped on a three-foothold track. The "walker" features a palladium(II) complex "foot" that can be selectively stepped between 4-dimethylaminopyridine and pyridine ligand sites on the track via reversible protonation while the walker remains attached to the track throughout by means of a kinetically inert platinum(II) complex foot. The substitution pattern of the three ligand binding sites, together with the kinetic stability of the metal-ligand coordination bonds, affords the two positional isomers a high degree of metastability, meaning that altering the chemical state of the track does not automatically instigate stepping in the absence of an additional stimulus (heat in the presence of a coordinating solvent). The use of metastable metal complexes for foot-track interactions offers a promising alternative to dynamic covalent chemistry for the design of small-molecule synthetic molecular walkers.
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Affiliation(s)
- Jonathon E Beves
- School of Chemistry, University of Edinburgh , The King's Buildings, West Mains Road, Edinburgh EH9 3JJ, United Kingdom
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41
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Leigh DA, Lewandowska U, Lewandowski B, Wilson MR. Synthetic Molecular Walkers. MOLECULAR MACHINES AND MOTORS 2014; 354:111-38. [DOI: 10.1007/128_2014_546] [Citation(s) in RCA: 29] [Impact Index Per Article: 2.9] [Reference Citation Analysis] [Track Full Text] [Subscribe] [Scholar Register] [Indexed: 12/27/2022]
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42
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Wilson A, Gasparini G, Matile S. Functional systems with orthogonal dynamic covalent bonds. Chem Soc Rev 2014; 43:1948-62. [DOI: 10.1039/c3cs60342c] [Citation(s) in RCA: 229] [Impact Index Per Article: 22.9] [Reference Citation Analysis] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Indexed: 12/22/2022]
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43
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Affiliation(s)
- Soumen K. Samanta
- Center of Micro- and Nanochemistry
and Engineering, Organische Chemie I, Universität Siegen, Adolf-Reichwein-Str.
2, D-57068 Siegen, Germany
| | - Michael Schmittel
- Center of Micro- and Nanochemistry
and Engineering, Organische Chemie I, Universität Siegen, Adolf-Reichwein-Str.
2, D-57068 Siegen, Germany
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44
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Li H, Cheng C, McGonigal PR, Fahrenbach AC, Frasconi M, Liu WG, Zhu Z, Zhao Y, Ke C, Lei J, Young RM, Dyar SM, Co DT, Yang YW, Botros YY, Goddard WA, Wasielewski MR, Astumian RD, Stoddart JF. Relative Unidirectional Translation in an Artificial Molecular Assembly Fueled by Light. J Am Chem Soc 2013; 135:18609-20. [DOI: 10.1021/ja4094204] [Citation(s) in RCA: 97] [Impact Index Per Article: 8.8] [Reference Citation Analysis] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Indexed: 01/05/2023]
Affiliation(s)
| | | | | | - Albert C. Fahrenbach
- State Key Laboratory of Supramolecular
Structure and Materials, College of Chemistry, Jilin University, 2699
Qianjin Street, Changchun 130012, PR China
| | | | - Wei-Guang Liu
- Materials and Process
Simulation Center, California Institute of Technology, Pasadena, California 91125, United States
| | | | - Yanli Zhao
- Division of Chemistry and Biological Chemistry, School
of Physical and Mathematical Sciences, Nanyang Technological University, 21 Nanyang Link, Singapore 637371
- School of Materials Science and Engineering, Nanyang Technological University, 50 Nanyang Avenue, Singapore 639798
| | | | | | | | | | | | - Ying-Wei Yang
- State Key Laboratory of Supramolecular
Structure and Materials, College of Chemistry, Jilin University, 2699
Qianjin Street, Changchun 130012, PR China
| | - Youssry Y. Botros
- National Center for Nano Technology Research, King Abdulaziz City for Science and Technology, P.O. Box 6086, Riyadh 11442, Kingdom of Saudi Arabia
- Intel Labs, Building RNB-6-61, 2200 Mission College Boulevard, Santa Clara, California 95054, United States
| | - William A. Goddard
- Materials and Process
Simulation Center, California Institute of Technology, Pasadena, California 91125, United States
- NanoCentury KAIST Institute
and Graduate School of EEWS (WCU), Korea Advanced Institute of Science
and Technology (KAIST), 373-1 Guseong
Dong, Yuseong Gu, Daejeon 305-701, Republic of Korea
| | | | - R. Dean Astumian
- Department of Physics, The University of Maine, 5709 Bennett Hall, Orono, Maine 04469-5709, United States
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45
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Li J, Nowak P, Otto S. Dynamic Combinatorial Libraries: From Exploring Molecular Recognition to Systems Chemistry. J Am Chem Soc 2013; 135:9222-39. [DOI: 10.1021/ja402586c] [Citation(s) in RCA: 353] [Impact Index Per Article: 32.1] [Reference Citation Analysis] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Indexed: 12/14/2022]
Affiliation(s)
- Jianwei Li
- Centre for Systems Chemistry, Stratingh Institute, University of Groningen, Nijenborgh 4, 9747
AG Groningen, The Netherlands
| | - Piotr Nowak
- Centre for Systems Chemistry, Stratingh Institute, University of Groningen, Nijenborgh 4, 9747
AG Groningen, The Netherlands
| | - Sijbren Otto
- Centre for Systems Chemistry, Stratingh Institute, University of Groningen, Nijenborgh 4, 9747
AG Groningen, The Netherlands
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46
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Campaña AG, Leigh DA, Lewandowska U. One-dimensional random walk of a synthetic small molecule toward a thermodynamic sink. J Am Chem Soc 2013; 135:8639-45. [PMID: 23672608 DOI: 10.1021/ja402382n] [Citation(s) in RCA: 36] [Impact Index Per Article: 3.3] [Reference Citation Analysis] [Abstract] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Indexed: 12/29/2022]
Abstract
We report on the spontaneous intramolecular migration of α-methylene-4-nitrostyrene from amine group to amine group along oligoethyleneimine tracks up to eight repeat units in length (number of amine footholds, n = 3, 5, 9). Each track consists of n - 1 aliphatic secondary amine footholds plus a naphthylmethylamine group foothold situated at one end of the track. Under basic conditions the α-methylene-4-nitrostyrene unit undergoes a series of reversible intramolecular Michael-retro-Michael reactions between adjacent amine groups that move it up and down the track. For n = 3 and 5 it is possible to monitor the population of every positional isomer on the track by (1)H NMR spectroscopy. On the longest track (n = 9) the fraction of walkers on each end-foothold can be quantified with respect to those on the inner footholds. In all cases the naphthylmethylamine foothold acts as a thermodynamic sink with the steady-state distribution significantly biased in favor of the walker at that site. The dynamics of the walker migration is well described by the random walk of a Brownian particle in one dimension.
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Affiliation(s)
- Araceli G Campaña
- School of Chemistry, University of Edinburgh, The King's Buildings, West Mains Road, Edinburgh EH9 3JJ, United Kingdom
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47
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Sawaki T, Ishizuka T, Kawano M, Shiota Y, Yoshizawa K, Kojima T. Complete photochromic structural changes in ruthenium(II)-diimine complexes, based on control of the excited states by metalation. Chemistry 2013; 19:8978-90. [PMID: 23681489 DOI: 10.1002/chem.201300437] [Citation(s) in RCA: 6] [Impact Index Per Article: 0.5] [Reference Citation Analysis] [Abstract] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Received: 02/04/2013] [Revised: 03/28/2013] [Indexed: 11/08/2022]
Abstract
The thermal and photochemical reactions of a newly synthesized complex, [Ru(II)(TPA)(tpphz)](2+) (1; TPA=tris(2-pyridylmethyl)amine, tpphz=tetrapyrido[3,2-a:2',3'-c:3'',2''-h: 2''',3'''-j]phenazine), and its derivatives have been investigated. Heating a solution of complex 1 (closed form) and its derivatives in MeCN caused the partial dissociation of one pyridylmethyl moiety of the TPA ligand and the resulting vacant site on the Ru(II) center was occupied by a molecule of MeCN from the solvent to give a dissociated complex, [Ru(II)(η(3)-TPA)(tpphz)(MeCN)](2+) (1', open form), and its derivatives, respectively, in quantitative yields. The thermal dissociation reactions were investigated on the basis of kinetics analysis, which indicated that the reactions proceeded through a seven-coordinate transition state. Although the backwards reaction was induced by photoirradiation of the MLCT absorption bands, the photoreaction of complex 1' reached a photostationary state between complexes 1 and 1' and, hence, the recovery of complex 1 from complex 1' was 67%. Upon protonation of complex 1 at the vacant site of the tpphz ligand, the efficiency of the photoinduced recovery of complex 1+H(+) from complex 1'+H(+) improved to 83%. In contrast, dinuclear μ-tpphz complexes 2 and 3, which contained the Ru(II)(TPA)(tpphz) unit and either a Ru(II)(bpy)2 or Pd(II)Cl2 moiety on the other coordination edge of the tpphz ligand, exhibited 100% photoconversion from their open forms into their closed forms (2'→2 and 3'→3). These results are the first examples of the complete photochromic structural change of a transition-metal complex, as represented by complete interconversion between its open and closed forms. Scrutinization by performing optical and electrochemical measurements allowed us to propose a rationale for how metal coordination at the vacant site of the tpphz ligand improves the efficiency of photoconversion from the open form into the closed form. It is essential to lower the energy level of the triplet metal-to-ligand charge-transfer excited state ((3)MLCT*) of the closed form relative to that of the triplet metal-centered excited state ((3)MC*) by metal coordination. This energy-level manipulation hinders the transition from the (3)MLCT* state into the (3)MC* state in the closed form to block the partial photodissociation of the TPA ligand.
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Affiliation(s)
- Takuya Sawaki
- Department of Chemistry, Graduate School of Pure and Applied Sciences, University of Tsukuba, 1-1-1 Tennoudai, Tsukuba, Ibaraki 305-8571, Japan
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Baggerman J, Haraszkiewicz N, Wiering PG, Fioravanti G, Marcaccio M, Paolucci F, Kay ER, Leigh DA, Brouwer AM. Induction of motion in a synthetic molecular machine: effect of tuning the driving force. Chemistry 2013; 19:5566-77. [PMID: 23564495 DOI: 10.1002/chem.201204016] [Citation(s) in RCA: 24] [Impact Index Per Article: 2.2] [Reference Citation Analysis] [Abstract] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Received: 11/09/2012] [Indexed: 12/28/2022]
Abstract
Rotaxane molecular shuttles were studied in which a tetralactam macrocyclic ring moves between a succinamide station and a second station in which the structure is varied. Station 2 in all cases is an aromatic imide, which is a poor hydrogen-bond acceptor in the neutral form, but a strong one when reduced with one or two electrons. When the charge density on the hydrogen-bond-accepting carbonyl groups in station 2 is reduced by changing a naphthalimide into a naphthalene diimide radical anion, the shuttling rate changes only slightly. When station 2 is a pyromellitimide radical anion, however, the shuttling rate is significantly reduced. This implies that the shuttling rate is not only determined by the initial unbinding of the ring from the first station, as previously supposed. An alternative reaction mechanism is proposed in which the ring binds to both stations in the transition state.
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Affiliation(s)
- Jacob Baggerman
- Van 't Hoff Institute for Molecular Science, University of Amsterdam, Amsterdam, The Netherlands
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49
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Jin J, Liu J, Lian X, Sun P, Zhao H. Dynamic polymer brushes on the surface of silica particles. RSC Adv 2013. [DOI: 10.1039/c3ra40227d] [Citation(s) in RCA: 14] [Impact Index Per Article: 1.3] [Reference Citation Analysis] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Indexed: 11/21/2022] Open
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50
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