1
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Lovinger GJ, Sak MH, Jacobsen EN. Catalysis of an S N2 pathway by geometric preorganization. Nature 2024; 632:1052-1059. [PMID: 39025123 DOI: 10.1038/s41586-024-07811-4] [Citation(s) in RCA: 0] [Impact Index Per Article: 0] [Reference Citation Analysis] [Abstract] [MESH Headings] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Received: 02/23/2024] [Accepted: 07/10/2024] [Indexed: 07/20/2024]
Abstract
Bimolecular nucleophilic substitution (SN2) mechanisms occupy a central place in the historical development and teaching of the field of organic chemistry1. Despite the importance of SN2 pathways in synthesis, catalytic control of ionic SN2 pathways is rare and notably uncommon even in biocatalysis2,3, reflecting the fact that any electrostatic interaction between a catalyst and the reacting ion pair necessarily stabilizes its charge and, by extension, reduces polar reactivity. Nucleophilic halogenase enzymes navigate this tradeoff by desolvating and positioning the halide nucleophile precisely on the SN2 trajectory, using geometric preorganization to compensate for the attenuation of nucleophilicity4. Here we show that a small-molecule (646 Da) hydrogen-bond-donor catalyst accelerates the SN2 step of an enantioselective Michaelis-Arbuzov reaction by recapitulating the geometric preorganization principle used by enzymes. Mechanistic and computational investigations show that the hydrogen-bond donor diminishes the reactivity of the chloride nucleophile yet accelerates the rate-determining dealkylation step by reorganizing both the phosphonium cation and the chloride anion into a geometry that is primed to enter the SN2 transition state. This new enantioselective Arbuzov reaction affords highly enantioselective access to an array of H-phosphinates, which are in turn versatile P-stereogenic building blocks amenable to myriad derivatizations. This work constitutes, to our knowledge, the first demonstration of catalytic enantiocontrol of the phosphonium dealkylation step, establishing a new platform for the synthesis of P-stereogenic compounds.
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Affiliation(s)
- Gabriel J Lovinger
- Department of Chemistry and Chemical Biology, Harvard University, Cambridge, MA, USA
| | - Marcus H Sak
- Department of Chemistry and Chemical Biology, Harvard University, Cambridge, MA, USA
| | - Eric N Jacobsen
- Department of Chemistry and Chemical Biology, Harvard University, Cambridge, MA, USA.
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2
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Meelua W, Linnolahti M, Jitonnom J. Mechanism of cationic ring-opening polymerisation of ε-caprolactone using metallocene/borate catalytic systems: a DFT and NCI study on chain initiation, propagation and termination. RSC Adv 2024; 14:11715-11727. [PMID: 38605894 PMCID: PMC11008195 DOI: 10.1039/d4ra01178c] [Citation(s) in RCA: 0] [Impact Index Per Article: 0] [Reference Citation Analysis] [Abstract] [Grants] [Track Full Text] [Download PDF] [Figures] [Journal Information] [Subscribe] [Scholar Register] [Received: 02/15/2024] [Accepted: 04/01/2024] [Indexed: 04/13/2024] Open
Abstract
We present a comprehensive DFT investigation on the cationic ring-opening polymerisation (CROP) of ε-caprolactone (CL) using zirconocene/borate catalyst systems. All possible pathways of the interaction between cationic species [Cp2ZrMe+] and counteranions, [A-] = [MeB(C6F5)3]- and [B(C6F5)4]-, were examined during chain initiation, propagation, and termination steps. The calculations reveal an active chain-end mechanism with O-alkyl bond cleavage of the polymerisation. The catalytic performance of the two counteranions is found to be identical, and they influence the initial process through stabilisation of the cationic species via non-covalent interactions (NCI), with the [MeB(C6F5)3]- anion stabilising the catalyst-monomer complex more effectively than the [B(C6F5)4]- anion by 24.3 kJ mol-1. The first two propagations are likely the rate-determining step, with calculated free-energy barriers of 61.4-71.2 and 73.9-80.6 kJ mol-1 with and without the anions (A-), respectively. The presence of the counteranion significantly affects the third propagation rate, lowering the barriers up to 20 kJ mol-1. Comparison of the first termination and the third propagation shows that they are not competitive, with the termination being less facile. We also studied the initiation and propagation steps for the hafnocene catalyst and found that the Hf catalyst slightly favours the CL CROP in comparison to the Zr catalyst. Analysis of solvent and dispersion interaction demonstrates that both factors play an important role in the process. NCI analysis reveals weak (van der Waals) interactions at the contacts between the cationic species and the counteranions during the reaction course. Overall, our results offer insights into the structures and interactions involved in the polymerisation.
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Affiliation(s)
- Wijitra Meelua
- Demonstration School, University of Phayao Phayao 56000 Thailand
- Unit of Excellence in Computational Molecular Science and Catalysis, and Division of Chemistry, School of Science, University of Phayao Phayao 56000 Thailand
| | - Mikko Linnolahti
- Department of Chemistry, University of Eastern Finland Joensuu Campus Yliopistokatu 7 FI-80100 Joensuu Finland
| | - Jitrayut Jitonnom
- Unit of Excellence in Computational Molecular Science and Catalysis, and Division of Chemistry, School of Science, University of Phayao Phayao 56000 Thailand
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3
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Wang YP, Zhang XP, Xie MS, Guo HM. Cobalt(II)-Catalyzed Enantioselective Propargyl Claisen Rearrangement: Access to Allenyl-Substituted Quaternary β-Ketoesters. Org Lett 2023; 25:7105-7109. [PMID: 37733040 DOI: 10.1021/acs.orglett.3c02496] [Citation(s) in RCA: 0] [Impact Index Per Article: 0] [Reference Citation Analysis] [Abstract] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Indexed: 09/22/2023]
Abstract
Highly enantioselective propargyl Claisen rearrangement of O-propargyl β-ketoesters was achieved under 2.5 mol % of the chiral cobalt complex as the catalyst under mild reaction conditions. With Co(OTf)2 as the Lewis acid and C1-symmetric imidazoline-pyrroloimidazolone pyridine as the ligand, diverse chiral allenyl-substituted all-carbon quaternary β-ketoesters were obtained in good yields (up to 97% yield) and high enantioselectivities (up to 98% ee).
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Affiliation(s)
- Ya-Ping Wang
- State Key Laboratory of Antiviral Drugs, Pingyuan Laboratory, Key Laboratory of Green Chemical Media and Reactions, Ministry of Education, Collaborative Innovation Center of Henan Province for Green Manufacturing of Fine Chemicals, School of Chemistry and Chemical Engineering, Henan Normal University, Xinxiang, Henan 453007, China
| | - Xing-Ping Zhang
- State Key Laboratory of Antiviral Drugs, Pingyuan Laboratory, Key Laboratory of Green Chemical Media and Reactions, Ministry of Education, Collaborative Innovation Center of Henan Province for Green Manufacturing of Fine Chemicals, School of Chemistry and Chemical Engineering, Henan Normal University, Xinxiang, Henan 453007, China
| | - Ming-Sheng Xie
- State Key Laboratory of Antiviral Drugs, Pingyuan Laboratory, Key Laboratory of Green Chemical Media and Reactions, Ministry of Education, Collaborative Innovation Center of Henan Province for Green Manufacturing of Fine Chemicals, School of Chemistry and Chemical Engineering, Henan Normal University, Xinxiang, Henan 453007, China
| | - Hai-Ming Guo
- State Key Laboratory of Antiviral Drugs, Pingyuan Laboratory, Key Laboratory of Green Chemical Media and Reactions, Ministry of Education, Collaborative Innovation Center of Henan Province for Green Manufacturing of Fine Chemicals, School of Chemistry and Chemical Engineering, Henan Normal University, Xinxiang, Henan 453007, China
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4
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Das K, Halder S. Synthesis of Functionalized Five-Membered Heterocycles from Epoxides: A Hydrogen-Bond Donor Catalytic Approach. J Org Chem 2023; 88:12872-12883. [PMID: 36007267 DOI: 10.1021/acs.joc.2c00902] [Citation(s) in RCA: 1] [Impact Index Per Article: 1.0] [Reference Citation Analysis] [Abstract] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Indexed: 12/13/2022]
Abstract
The synthesis of highly functionalized five-membered oxa- and aza-heterocycles has been reported utilizing hydrogen-bond donor (HBD) catalysis. In this method, an epoxide was taken as a substrate and reacted with functionalized arylidene/alkylidene malononitrile derivatives in the presence of a newly designed HBD catalyst. In all the cases, the products 2,5-disubstituted tetrahydrofurans (2,5-THFs) were obtained in good to excellent yields (up to 86%) with high diastereoselectivity (dr up to 99:1) as a single regioisomer. The stereochemistry at the 2- and 5-positions of the five-membered ring has been confirmed by single-crystal X-ray analysis, and cis is found to be the major product. The same strategy has been further utilized to obtain substituted oxazolidines whenever the epoxide has been reacted with isocyanate as an electrophile. In order to induce enantioselectivity, a chiral epoxide has been reacted with both the electrophiles in the presence of the same catalyst system to afford the single stereoisomer of the final products. This synthetic methodology involves a low catalyst loading and ambient reaction condition and has been generalized with various substituents present in the starting electrophiles to produce the resultant products in acceptable yields and stereoselectivity.
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Affiliation(s)
- Koushik Das
- Department of Chemistry, Visvesvaraya National Institute of Technology (VNIT), Nagpur, Maharashtra 440010, India
| | - Sandipan Halder
- Department of Chemistry, Visvesvaraya National Institute of Technology (VNIT), Nagpur, Maharashtra 440010, India
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5
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Kee CW. Molecular Understanding and Practical In Silico Catalyst Design in Computational Organocatalysis and Phase Transfer Catalysis-Challenges and Opportunities. Molecules 2023; 28:1715. [PMID: 36838703 PMCID: PMC9966076 DOI: 10.3390/molecules28041715] [Citation(s) in RCA: 1] [Impact Index Per Article: 1.0] [Reference Citation Analysis] [Abstract] [Key Words] [Track Full Text] [Figures] [Journal Information] [Subscribe] [Scholar Register] [Received: 12/31/2022] [Revised: 02/03/2023] [Accepted: 02/05/2023] [Indexed: 02/25/2023] Open
Abstract
Through the lens of organocatalysis and phase transfer catalysis, we will examine the key components to calculate or predict catalysis-performance metrics, such as turnover frequency and measurement of stereoselectivity, via computational chemistry. The state-of-the-art tools available to calculate potential energy and, consequently, free energy, together with their caveats, will be discussed via examples from the literature. Through various examples from organocatalysis and phase transfer catalysis, we will highlight the challenges related to the mechanism, transition state theory, and solvation involved in translating calculated barriers to the turnover frequency or a metric of stereoselectivity. Examples in the literature that validated their theoretical models will be showcased. Lastly, the relevance and opportunity afforded by machine learning will be discussed.
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Affiliation(s)
- Choon Wee Kee
- Institute of Sustainability for Chemicals, Energy and Environment (ISCE2), Agency for Science, Technology and Research (A*STAR), 1 Pesek Road, Jurong Island, Singapore 627833, Republic of Singapore
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6
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Samha MH, Wahlman JLH, Read JA, Werth J, Jacobsen EN, Sigman MS. Exploring Structure-Function Relationships of Aryl Pyrrolidine-Based Hydrogen-Bond Donors in Asymmetric Catalysis Using Data-Driven Techniques. ACS Catal 2022; 12:14836-14845. [PMID: 36816226 PMCID: PMC9937582 DOI: 10.1021/acscatal.2c04824] [Citation(s) in RCA: 0] [Impact Index Per Article: 0] [Reference Citation Analysis] [Abstract] [Key Words] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Indexed: 11/23/2022]
Abstract
Hydrogen bond-based organocatalysts rely on networks of attractive noncovalent interactions (NCIs) to impart enantioselectivity. As a specific example, aryl pyrrolidine substituted urea, thiourea, and squaramide organocatalysts function cooperatively through hydrogen bonding and difficult-to-predict NCIs as a function of the reaction partners. To uncover the synergistic effect of the structural components of this catalyst class, we applied data science tools to study various model reactions using a derivatized, aryl pyrrolidine-based, hydrogen-bond donor (HBD) catalyst library. Through a combination of experimentally collected data and data mined from previous reports, statistical models were constructed, illuminating the general features necessary for high enantioselectivity. A distinct dependence on the identity of the electrophilic reaction partner and HBD catalyst is observed, suggesting that a general interaction is conserved throughout the reactions analyzed. The resulting models also demonstrate predictive capability by the successful improvement of a previously reported reaction using out-of-sample reaction components. Overall, this study highlights the power of data science in exploring mechanistic hypotheses in asymmetric HBD catalysis and provides a prediction platform applicable in future reaction optimization.
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Affiliation(s)
- Mohammad H. Samha
- Department of Chemistry, University of Utah, Salt Lake City, Utah 84112, United States
| | - Julie L. H. Wahlman
- Department of Chemistry, University of Utah, Salt Lake City, Utah 84112, United States
| | - Jacquelyne A. Read
- Department of Chemistry and Chemical Biology, Harvard University, Cambridge, Massachusetts 02138, United States; Department of Chemistry, University of Utah, Salt Lake City, Utah 84112, United States
| | - Jacob Werth
- Department of Chemistry, University of Utah, Salt Lake City, Utah 84112, United States
| | - Eric N. Jacobsen
- Department of Chemistry and Chemical Biology, Harvard University, Cambridge, Massachusetts 02138, United States
| | - Matthew S. Sigman
- Department of Chemistry, University of Utah, Salt Lake City, Utah 84112, United States
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7
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Jo T, Taschinski S, Leach IF, Bauer C, Hashmi ASK, Klein JEMN. On the Role of Noncovalent Ligand-Substrate Interactions in Au(I) Catalysis: An Experimental and Computational Study of Protodeauration. ACS Catal 2022; 12:13158-13163. [DOI: 10.1021/acscatal.2c03384] [Citation(s) in RCA: 0] [Impact Index Per Article: 0] [Reference Citation Analysis] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Received: 07/13/2022] [Revised: 09/25/2022] [Indexed: 11/29/2022]
Affiliation(s)
- Taegeun Jo
- Molecular Inorganic Chemistry, Stratingh Institute for Chemistry, Faculty of Science and Engineering, University of Groningen, Nijenborgh 4, 9747 AG Groningen, The Netherlands
| | - Svenja Taschinski
- Molecular Inorganic Chemistry, Stratingh Institute for Chemistry, Faculty of Science and Engineering, University of Groningen, Nijenborgh 4, 9747 AG Groningen, The Netherlands
- Organisch-Chemisches Institut, Heidelberg University, Im Neuenheimer Feld 270, 69120 Heidelberg, Germany
| | - Isaac F. Leach
- Molecular Inorganic Chemistry, Stratingh Institute for Chemistry, Faculty of Science and Engineering, University of Groningen, Nijenborgh 4, 9747 AG Groningen, The Netherlands
| | - Christina Bauer
- Molecular Inorganic Chemistry, Stratingh Institute for Chemistry, Faculty of Science and Engineering, University of Groningen, Nijenborgh 4, 9747 AG Groningen, The Netherlands
- Organisch-Chemisches Institut, Heidelberg University, Im Neuenheimer Feld 270, 69120 Heidelberg, Germany
| | - A. Stephen K. Hashmi
- Organisch-Chemisches Institut, Heidelberg University, Im Neuenheimer Feld 270, 69120 Heidelberg, Germany
| | - Johannes E. M. N. Klein
- Molecular Inorganic Chemistry, Stratingh Institute for Chemistry, Faculty of Science and Engineering, University of Groningen, Nijenborgh 4, 9747 AG Groningen, The Netherlands
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8
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Gallarati S, Fabregat R, Juraskova V, Inizan TJ, Corminboeuf C. How Robust Is the Reversible Steric Shielding Strategy for Photoswitchable Organocatalysts? J Org Chem 2022; 87:8849-8857. [PMID: 35762705 PMCID: PMC9295146 DOI: 10.1021/acs.joc.1c02991] [Citation(s) in RCA: 3] [Impact Index Per Article: 1.5] [Reference Citation Analysis] [Abstract] [Track Full Text] [Download PDF] [Figures] [Journal Information] [Subscribe] [Scholar Register] [Indexed: 11/29/2022]
Abstract
A highly appealing strategy to modulate a catalyst's activity and/or selectivity in a dynamic and noninvasive way is to incorporate a photoresponsive unit into a catalytically competent molecule. However, the description of the photoinduced conformational or structural changes that alter the catalyst's intrinsic reactivity is often reduced to a handful of intuitive static representations, which can struggle to capture the complexity of flexible organocatalysts. Here, we show how a comprehensive exploration of the free energy landscape of N-alkylated azobenzene-tethered piperidine catalysts is essential to unravel the conformational characteristics of each configurational state and explain the experimentally observed reactivity trends. Mapping the catalysts' conformational space highlights the existence of false ON or OFF states that lower their switching ability. Our findings expose the challenges associated with the realization of a reversible steric shielding for the photocontrol of Brønsted basicity of piperidine photoswitchable organocatalysts.
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Affiliation(s)
- Simone Gallarati
- Laboratory for Computational Molecular Design, Institute of Chemical Sciences and Engineering, Ecole Polytechnique Fédérale de Lausanne (EPFL), Lausanne 1015, Switzerland
| | - Raimon Fabregat
- Laboratory for Computational Molecular Design, Institute of Chemical Sciences and Engineering, Ecole Polytechnique Fédérale de Lausanne (EPFL), Lausanne 1015, Switzerland
| | - Veronika Juraskova
- Laboratory for Computational Molecular Design, Institute of Chemical Sciences and Engineering, Ecole Polytechnique Fédérale de Lausanne (EPFL), Lausanne 1015, Switzerland
| | - Theo Jaffrelot Inizan
- Laboratory for Computational Molecular Design, Institute of Chemical Sciences and Engineering, Ecole Polytechnique Fédérale de Lausanne (EPFL), Lausanne 1015, Switzerland
| | - Clemence Corminboeuf
- Laboratory for Computational Molecular Design, Institute of Chemical Sciences and Engineering, Ecole Polytechnique Fédérale de Lausanne (EPFL), Lausanne 1015, Switzerland.,National Center for Competence in Research─Catalysis (NCCR-Catalysis), Ecole Polytechnique Fédérale de Lausanne (EPFL), Lausanne 1015, Switzerland.,National Center for Computational Design and Discovery of Novel Materials (MARVEL), Ecole Polytechnique Fédérale de Lausanne (EPFL), Lausanne 1015, Switzerland
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9
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Zondlo NJ. Solvation stabilizes intercarbonyl n→π* interactions and polyproline II helix. Phys Chem Chem Phys 2022; 24:13571-13586. [PMID: 35635541 DOI: 10.1039/d2cp00857b] [Citation(s) in RCA: 0] [Impact Index Per Article: 0] [Reference Citation Analysis] [Abstract] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Indexed: 11/21/2022]
Abstract
n→π* interactions between consecutive carbonyls stabilize the α-helix and polyproline II helix (PPII) conformations in proteins. n→π* interactions have been suggested to provide significant conformational biases to the disordered states of proteins. To understand the roles of solvation on the strength of n→π* interactions, computational investigations were conducted on a model n→π* interaction, the twisted-parallel-offset formaldehyde dimer, as a function of explicit solvation of the donor and acceptor carbonyls, using water and HF. In addition, the effects of urea, thiourea, guanidinium, and monovalent cations on n→π* interaction strength were examined. Solvation of the acceptor carbonyl significantly strengthens the n→π* interaction, while solvation of the donor carbonyl only modestly weakens the n→π* interaction. The n→π* interaction strength was maximized with two solvent molecules on the acceptor carbonyl. Urea stabilized the n→π* interaction via simultaneous engagement of both oxygen lone pairs on the acceptor carbonyl. Solvent effects were further investigated in the model peptides Ac-Pro-NMe2, Ac-Ala-NMe2, and Ac-Pro2-NMe2. Solvent effects in peptides were similar to those in the formaldehyde dimer, with solvation of the acceptor carbonyl increasing n→π* interaction strength and resulting in more compact conformations, in both the proline endo and exo ring puckers, as well as a reduction in the energy difference between these ring puckers. Carbonyl solvation leads to an energetic preference for PPII over both the α-helix and β/extended conformations, consistent with experimental data that protic solvents and protein denaturants both promote PPII. Solvation of the acceptor carbonyl weakens the intraresidue C5 hydrogen bond that stabilizes the β conformation.
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Affiliation(s)
- Neal J Zondlo
- Department of Chemistry and Biochemistry, University of Delaware, Newark, DE 19716, USA.
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10
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Juraskova V, Celerse F, Laplaza R, Corminboeuf C. Assessing the persistence of chalcogen bonds in solution with neural network potentials. J Chem Phys 2022; 156:154112. [DOI: 10.1063/5.0085153] [Citation(s) in RCA: 2] [Impact Index Per Article: 1.0] [Reference Citation Analysis] [Abstract] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Indexed: 11/14/2022] Open
Abstract
Non-covalent bonding patterns are commonly harvested as a design principle in the field of catalysis, supramolecular chemistry and functional materials to name a few. Yet, their computational description generally neglects finite temperature and environment effects, which promote competing interactions and alter their static gas-phase properties. Recently, neural network potentials (NNPs) trained on Density Functional Theory (DFT) data have become increasingly popular to simulate molecular phenomena in condensed phase with an accuracy comparable to ab initio methods. To date, most applications have centered on solid-state materials or fairly simple molecules made of a limited number of elements. Herein, we focus on the persistence and strength of chalcogen bonds involving a benzotelluradiazole in condensed phase. While the tellurium-containing heteroaromatic molecules are known to exhibit pronounced interactions with anions and lone pairs of different atoms, the relevance of competing intermolecular interactions, notably with the solvent, is complicated to monitor experimentally but also challenging to model at an accurate electronic structure level. Here, we train direct and baselined NNPs to reproduce hybrid DFT energies and forces in order to identify what are the most prevalent non-covalent interactions occurring in a solute-Cl$^-$-THF mixture. The simulations in explicit solvent highlight competition with chalcogen bonds formed with the solvent and the short-range directionality of the interaction with direct consequences for the molecular properties in the solution. The comparison with other potentials (e.g., AMOEBA, direct NNP and continuum solvent model) also demonstrates that baselined NNPs offer a reliable picture of the non-covalent interaction interplay occurring in solution.
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11
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Chan YC, Sak MH, Frank SA, Miller SJ. Tunable and Cooperative Catalysis for Enantioselective Pictet-Spengler Reaction with Varied Nitrogen-Containing Heterocyclic Carboxaldehydes. Angew Chem Int Ed Engl 2021; 60:24573-24581. [PMID: 34487418 PMCID: PMC8556314 DOI: 10.1002/anie.202109694] [Citation(s) in RCA: 5] [Impact Index Per Article: 1.7] [Reference Citation Analysis] [Abstract] [Key Words] [MESH Headings] [Grants] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Received: 07/20/2021] [Revised: 08/24/2021] [Indexed: 01/16/2023]
Abstract
Herein we report an organocatalytic enantioselective functionalization of heterocyclic carboxaldehydes via the Pictet-Spengler reaction. Through careful pairing of novel squaramide and Brønsted acid catalysts, our method tolerates a breadth of heterocycles, enabling preparation of a series of heterocycle conjugated β-(tetrahydro)carbolines in good yield and enantioselectivity. Careful selection of carboxylic acid co-catalyst is essential for toleration of a variety of regioisomeric heterocycles. Utility is demonstrated via the three-step stereoselective preparation of pyridine-containing analogues of potent selective estrogen receptor downregulator and U.S. FDA approved drug Tadalafil.
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Affiliation(s)
- Yuk-Cheung Chan
- Department of Chemistry, Yale University, New Haven, CT, 06520, USA
| | - Marcus H Sak
- Department of Chemistry, Yale University, New Haven, CT, 06520, USA
| | - Scott A Frank
- Synthetic Molecule Design and Development, Eli Lilly and Company, Indianapolis, IN, 46285, USA
| | - Scott J Miller
- Department of Chemistry, Yale University, New Haven, CT, 06520, USA
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12
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Chan Y, Sak MH, Frank SA, Miller SJ. Tunable and Cooperative Catalysis for Enantioselective Pictet‐Spengler Reaction with Varied Nitrogen‐Containing Heterocyclic Carboxaldehydes. Angew Chem Int Ed Engl 2021. [DOI: 10.1002/ange.202109694] [Citation(s) in RCA: 2] [Impact Index Per Article: 0.7] [Reference Citation Analysis] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Indexed: 12/29/2022]
Affiliation(s)
- Yuk‐Cheung Chan
- Department of Chemistry Yale University New Haven CT 06520 USA
| | - Marcus H. Sak
- Department of Chemistry Yale University New Haven CT 06520 USA
| | - Scott A. Frank
- Synthetic Molecule Design and Development Eli Lilly and Company Indianapolis IN 46285 USA
| | - Scott J. Miller
- Department of Chemistry Yale University New Haven CT 06520 USA
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13
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Mao JH, Wang YB, Yang L, Xiang SH, Wu QH, Cui Y, Lu Q, Lv J, Li S, Tan B. Organocatalyst-controlled site-selective arene C-H functionalization. Nat Chem 2021; 13:982-991. [PMID: 34373595 DOI: 10.1038/s41557-021-00750-x] [Citation(s) in RCA: 30] [Impact Index Per Article: 10.0] [Reference Citation Analysis] [Abstract] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Received: 09/21/2020] [Accepted: 06/08/2021] [Indexed: 02/08/2023]
Abstract
Over the past three decades, organocatalysis has emerged as a powerful catalysis platform and has gradually been incorporated into the routine synthetic toolbox to obtain chiral molecules. However, its application in the site- and enantioselective functionalization of inactive aryl C-H bonds remains in its infancy. Here, we present an organocatalyst-controlled para-selective arene C-H functionalization strategy that addresses this issue, which remains an enduring challenge in arene functionalization chemistry. By emulating enzyme catalysis, the chiral phosphoric acid catalyst offers an ideal chiral environment for stereoinduction, and the projecting substituents give control of chemo- and site-selectivity. Various types of nucleophile are compatible with this method, affording more than 100 para-selective adducts with stereodefined carbon centres or axes in viable molecular contexts. This protocol is expected to provide a general strategy for para-selective functionalization of arene C-H bonds in a controlled manner.
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Affiliation(s)
- Jian-Hui Mao
- Shenzhen Grubbs Institute and Department of Chemistry, Guangdong Provincial Key Laboratory of Catalysis, Southern University of Science and Technology, Shenzhen, China
| | - Yong-Bin Wang
- Shenzhen Grubbs Institute and Department of Chemistry, Guangdong Provincial Key Laboratory of Catalysis, Southern University of Science and Technology, Shenzhen, China.
| | - Limin Yang
- College of Materials, Chemistry and Chemical Engineering, Hangzhou Normal University, Hangzhou, China
| | - Shao-Hua Xiang
- Academy for Advanced Interdisciplinary Studies, Southern University of Science and Technology, Shenzhen, China
| | - Quan-Hao Wu
- Shenzhen Grubbs Institute and Department of Chemistry, Guangdong Provincial Key Laboratory of Catalysis, Southern University of Science and Technology, Shenzhen, China
| | - Yuan Cui
- Shenzhen Grubbs Institute and Department of Chemistry, Guangdong Provincial Key Laboratory of Catalysis, Southern University of Science and Technology, Shenzhen, China
| | - Qian Lu
- Shenzhen Grubbs Institute and Department of Chemistry, Guangdong Provincial Key Laboratory of Catalysis, Southern University of Science and Technology, Shenzhen, China
| | - Jie Lv
- Shenzhen Grubbs Institute and Department of Chemistry, Guangdong Provincial Key Laboratory of Catalysis, Southern University of Science and Technology, Shenzhen, China
| | - Shaoyu Li
- Academy for Advanced Interdisciplinary Studies, Southern University of Science and Technology, Shenzhen, China
| | - Bin Tan
- Shenzhen Grubbs Institute and Department of Chemistry, Guangdong Provincial Key Laboratory of Catalysis, Southern University of Science and Technology, Shenzhen, China.
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14
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Shoja A, Zhai J, Reid JP. Comprehensive Stereochemical Models for Selectivity Prediction in Diverse Chiral Phosphate-Catalyzed Reaction Space. ACS Catal 2021. [DOI: 10.1021/acscatal.1c03520] [Citation(s) in RCA: 5] [Impact Index Per Article: 1.7] [Reference Citation Analysis] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Indexed: 12/25/2022]
Affiliation(s)
- Ali Shoja
- Department of Chemistry, University of British Columbia, 2036 Main Mall, Vancouver, British Columbia V6T 1Z1, Canada
| | - Jianyu Zhai
- Department of Chemistry, University of British Columbia, 2036 Main Mall, Vancouver, British Columbia V6T 1Z1, Canada
| | - Jolene P. Reid
- Department of Chemistry, University of British Columbia, 2036 Main Mall, Vancouver, British Columbia V6T 1Z1, Canada
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15
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Strassfeld DA, Algera RF, Wickens ZK, Jacobsen EN. A Case Study in Catalyst Generality: Simultaneous, Highly-Enantioselective Brønsted- and Lewis-Acid Mechanisms in Hydrogen-Bond-Donor Catalyzed Oxetane Openings. J Am Chem Soc 2021; 143:9585-9594. [PMID: 34152759 PMCID: PMC8564877 DOI: 10.1021/jacs.1c03992] [Citation(s) in RCA: 18] [Impact Index Per Article: 6.0] [Reference Citation Analysis] [Abstract] [MESH Headings] [Grants] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Indexed: 12/14/2022]
Abstract
Generality in asymmetric catalysis can be manifested in dramatic and valuable ways, such as high enantioselectivity across a wide assortment of substrates in a given reaction (broad substrate scope) or as applicability of a given chiral framework across a variety of mechanistically distinct reactions (privileged catalysts). Reactions and catalysts that display such generality hold special utility, because they can be applied broadly and sometimes even predictably in new applications. Despite the great value of such systems, the factors that underlie generality are not well understood. Here, we report a detailed investigation of an asymmetric hydrogen-bond-donor catalyzed oxetane opening with TMSBr that is shown to possess unexpected mechanistic generality. Careful analysis of the role of adventitious protic impurities revealed the participation of competing pathways involving addition of either TMSBr or HBr in the enantiodetermining, ring-opening event. The optimal catalyst induces high enantioselectivity in both pathways, thereby achieving precise stereocontrol in fundamentally different mechanisms under the same conditions and with the same chiral framework. The basis for that generality is analyzed using a combination of experimental and computational methods, which indicate that proximally localized catalyst components cooperatively stabilize and precisely orient dipolar enantiodetermining transition states in both pathways. Generality across different mechanisms is rarely considered in catalyst discovery efforts, but we suggest that it may play a role in the identification of so-called privileged catalysts.
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Affiliation(s)
- Daniel A Strassfeld
- Department of Chemistry and Chemical Biology, Harvard University, Cambridge, Massachusetts 02138, United States
| | - Russell F Algera
- Department of Chemistry and Chemical Biology, Harvard University, Cambridge, Massachusetts 02138, United States
| | - Zachary K Wickens
- Department of Chemistry and Chemical Biology, Harvard University, Cambridge, Massachusetts 02138, United States
| | - Eric N Jacobsen
- Department of Chemistry and Chemical Biology, Harvard University, Cambridge, Massachusetts 02138, United States
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16
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Ronchi E, Paradine SM, Jacobsen EN. Enantioselective, Catalytic Multicomponent Synthesis of Homoallylic Amines Enabled by Hydrogen-Bonding and Dispersive Interactions. J Am Chem Soc 2021; 143:7272-7278. [PMID: 33949857 PMCID: PMC8547772 DOI: 10.1021/jacs.1c03024] [Citation(s) in RCA: 11] [Impact Index Per Article: 3.7] [Reference Citation Analysis] [Abstract] [MESH Headings] [Grants] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Indexed: 12/23/2022]
Abstract
We report a one-step catalytic, enantioselective method for the preparation of homoallylic N-Boc amines directly from acetals. Reactive iminium ion intermediates are generated in situ through the combination of an acetal, a chiral thiourea catalyst, trialkylsilyl triflate, and N-Boc carbamate and are subsequently trapped by a variety of allylsilane nucleophiles. No homoallylic ether byproducts are detected, consistent with allylation of the iminium intermediate being highly favored over allylation of the intermediate oxocarbenium ion. Acetals derived from aromatic aldehydes possessing a variety of functional groups and substitution patterns yield homoallylic amines with excellent levels of enantiomeric enrichment. Experimental and computational data are consistent with an anchoring hydrogen-bond interaction between the protioiminium ion and the amide of the catalyst in the enantiodetermining transition state, and with stereodifferentiation achieved through specific noncovalent interactions (NCIs) with the catalyst pyrenyl moiety. Evidence is provided that the key NCI in the major pathway is a π-stacking interaction, contrasting with the cation-π interactions invoked in previously studied reactions promoted by the same family of aryl-pyrrolidino-H-bond-donor catalysts.
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Affiliation(s)
| | | | - Eric N. Jacobsen
- Department of Chemistry and Chemical Biology, Harvard University, Cambridge, Massachusetts, 02138, United States
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17
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Ghosh B, Balhara R, Jindal G, Mukherjee S. Catalytic Enantioselective Desymmetrizing Fischer Indolization through Dynamic Kinetic Resolution. Angew Chem Int Ed Engl 2021; 60:9086-9092. [PMID: 33555647 DOI: 10.1002/anie.202017268] [Citation(s) in RCA: 9] [Impact Index Per Article: 3.0] [Reference Citation Analysis] [Abstract] [Key Words] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Received: 12/29/2020] [Indexed: 12/14/2022]
Abstract
The first catalytic enantioselective Fischer indolization of prochiral diketones containing enantiotopic carbonyl groups is developed and shown to proceed through dynamic kinetic resolution (DKR). Catalyzed by the combination of a spirocyclic chiral phosphoric acid and ZnCl2 (Lewis acid assisted Brønsted acid), this direct approach combines 2,2-disubstituted cyclopentane-1,3-diones with N-protected phenylhydrazines to furnish cyclopenta[b]indole derivatives containing an all-carbon quaternary stereocenter with good to excellent enantioselectivities.
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Affiliation(s)
- Biki Ghosh
- Department of Organic Chemistry, Indian Institute of Science, Bangalore, 560 012, India
| | - Reena Balhara
- Department of Organic Chemistry, Indian Institute of Science, Bangalore, 560 012, India
| | - Garima Jindal
- Department of Organic Chemistry, Indian Institute of Science, Bangalore, 560 012, India
| | - Santanu Mukherjee
- Department of Organic Chemistry, Indian Institute of Science, Bangalore, 560 012, India
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18
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Ghosh B, Balhara R, Jindal G, Mukherjee S. Catalytic Enantioselective Desymmetrizing Fischer Indolization through Dynamic Kinetic Resolution. Angew Chem Int Ed Engl 2021. [DOI: 10.1002/ange.202017268] [Citation(s) in RCA: 3] [Impact Index Per Article: 1.0] [Reference Citation Analysis] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Indexed: 01/20/2023]
Affiliation(s)
- Biki Ghosh
- Department of Organic Chemistry Indian Institute of Science Bangalore 560 012 India
| | - Reena Balhara
- Department of Organic Chemistry Indian Institute of Science Bangalore 560 012 India
| | - Garima Jindal
- Department of Organic Chemistry Indian Institute of Science Bangalore 560 012 India
| | - Santanu Mukherjee
- Department of Organic Chemistry Indian Institute of Science Bangalore 560 012 India
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19
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Kim H, Jang J, Shin S. Gold-Catalyzed Asymmetric Thioallylation of Propiolates via Charge-Induced Thio-Claisen Rearrangement. J Am Chem Soc 2020; 142:20788-20795. [PMID: 33206513 DOI: 10.1021/jacs.0c09783] [Citation(s) in RCA: 18] [Impact Index Per Article: 4.5] [Reference Citation Analysis] [Abstract] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Indexed: 12/23/2022]
Abstract
A gold(I)-catalyzed enantioselective thioallylation of propiolates with allyl sulfides is described. The key mechanistic element is a sulfonium-induced Claisen rearrangement which helps minimize the allyl dissociation and render higher enantioselectivity. This protocol features remarkable scope of the allyl moiety, allowing enantiocontrolled synthesis of all-carbon quaternary centers, and exhibits exceptional functional group compatibility with many Lewis bases and π-bonds. This intermolecular variant of Claisen rearrangement forges both C-S and C-C bonds concomitantly, providing efficient access to interesting optically active organosulfur compounds which can be transformed further through the vinyl sulfide as a functional handle. The rate of the reaction was zeroth order with respect to allyl sulfides, which suggested a reversible inhibition, providing a resting state for the catalyst. The Hammett plot displayed a correlation with σp values, suggesting a turnover-limiting sigmatropic rearrangement where decreased electron-density on sulfur accelerated the rearrangement.
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Affiliation(s)
- Hanbyul Kim
- Department of Chemistry, Research Institute of Natural Sciences and Center for New Directions in Organic Synthesis (CNOS), Hanyang University, 222 Wangsimni-ro, Seongdong-gu, Seoul 04763, South Korea
| | - Jiwon Jang
- Department of Chemistry, Research Institute of Natural Sciences and Center for New Directions in Organic Synthesis (CNOS), Hanyang University, 222 Wangsimni-ro, Seongdong-gu, Seoul 04763, South Korea
| | - Seunghoon Shin
- Department of Chemistry, Research Institute of Natural Sciences and Center for New Directions in Organic Synthesis (CNOS), Hanyang University, 222 Wangsimni-ro, Seongdong-gu, Seoul 04763, South Korea
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20
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Alarcón‐Matus E, Alvarado C, Romero‐Ceronio N, Ramos‐Rivera EM, Lobato‐García CE. Proline‐derived Long‐aliphatic‐chain Amphiphilic Organocatalysts (PDLACAOs) for Asymmetric Reactions in Aqueous Media. ASIAN J ORG CHEM 2020. [DOI: 10.1002/ajoc.202000419] [Citation(s) in RCA: 4] [Impact Index Per Article: 1.0] [Reference Citation Analysis] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Indexed: 12/31/2022]
Affiliation(s)
- Erika Alarcón‐Matus
- División Académica de Ciencias Básicas Universidad Juárez Autónoma de Tabasco Carretera Cunduacán-Jalpa Km 1, Col. La Esperanza 86690 Cunduacán Tabasco México
| | - Cuauhtémoc Alvarado
- División Académica de Ciencias Básicas Universidad Juárez Autónoma de Tabasco Carretera Cunduacán-Jalpa Km 1, Col. La Esperanza 86690 Cunduacán Tabasco México
| | - Nancy Romero‐Ceronio
- División Académica de Ciencias Básicas Universidad Juárez Autónoma de Tabasco Carretera Cunduacán-Jalpa Km 1, Col. La Esperanza 86690 Cunduacán Tabasco México
| | - Erika M. Ramos‐Rivera
- División Académica de Ciencias Básicas Universidad Juárez Autónoma de Tabasco Carretera Cunduacán-Jalpa Km 1, Col. La Esperanza 86690 Cunduacán Tabasco México
| | - Carlos E. Lobato‐García
- División Académica de Ciencias Básicas Universidad Juárez Autónoma de Tabasco Carretera Cunduacán-Jalpa Km 1, Col. La Esperanza 86690 Cunduacán Tabasco México
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21
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Payne C, Kass SR. Structural considerations for charge‐enhanced Brønsted acid catalysts. J PHYS ORG CHEM 2020. [DOI: 10.1002/poc.4069] [Citation(s) in RCA: 5] [Impact Index Per Article: 1.3] [Reference Citation Analysis] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Indexed: 12/12/2022]
Affiliation(s)
- Curtis Payne
- Department of Chemistry University of Minnesota Minneapolis MN USA
| | - Steven R. Kass
- Department of Chemistry University of Minnesota Minneapolis MN USA
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22
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Kennedy CR, Choi BY, Reeves MGR, Jacobsen EN. Enantioselective Catalysis of an Anionic Oxy-Cope Rearrangement Enabled by Synergistic Ion Binding. Isr J Chem 2020; 60:461-474. [PMID: 33132416 PMCID: PMC7592710 DOI: 10.1002/ijch.201900168] [Citation(s) in RCA: 4] [Impact Index Per Article: 1.0] [Reference Citation Analysis] [Abstract] [Key Words] [Grants] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Received: 12/12/2019] [Accepted: 02/20/2020] [Indexed: 01/09/2023]
Abstract
Charge-accelerated rearrangements present interesting challenges to enantioselective catalysis, due in large part to the competing requirements for maximizing reactivity (ion-pair separation) and stereochemical communication. Herein, we describe application of a synergistic ion-binding strategy to catalyze the anionic oxy-Cope rearrangement of a symmetric bis-styrenyl allyl alcohol in up to 75:25 e.r. Structure-reactivity-selectivity relationship studies, including linear free-energy-relationship analyses, with bifunctional urea catalysts indicate that H-bonding and cation-binding interactions act cooperatively to promote the chemo- and enantioselective [3,3]-rearrangement. Implications for catalyst designs applicable to other transformations involving oxyanionic intermediates are discussed.
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Affiliation(s)
- C Rose Kennedy
- Department of Chemistry and Chemical Biology, Harvard University, Cambridge, MA 02138
| | - Bo Young Choi
- Department of Chemistry and Chemical Biology, Harvard University, Cambridge, MA 02138
| | - Mary-Grace R Reeves
- Department of Chemistry and Chemical Biology, Harvard University, Cambridge, MA 02138
| | - Eric N Jacobsen
- Department of Chemistry and Chemical Biology, Harvard University, Cambridge, MA 02138
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23
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Krištofíková D, Filo J, Mečiarová M, Šebesta R. Why do thioureas and squaramides slow down the Ireland-Claisen rearrangement? Beilstein J Org Chem 2020; 15:2948-2957. [PMID: 31921366 PMCID: PMC6941421 DOI: 10.3762/bjoc.15.290] [Citation(s) in RCA: 1] [Impact Index Per Article: 0.3] [Reference Citation Analysis] [Abstract] [Key Words] [Track Full Text] [Download PDF] [Figures] [Journal Information] [Subscribe] [Scholar Register] [Received: 05/28/2019] [Accepted: 11/25/2019] [Indexed: 12/30/2022] Open
Abstract
A range of chiral hydrogen-bond-donating organocatalysts was tested in the Ireland–Claisen rearrangement of silyl ketene acetals. None of these organocatalysts was able to impart any enantioselectivity on the rearrangements. Furthermore, these organocatalysts slowed down the Ireland–Claisen rearrangement in comparison to an uncatalyzed reaction. The catalyst-free reaction proceeded well in green solvents or without any solvent. DFT calculations showed that the activation barriers are higher for reactions involving hydrogen-donating organocatalysts and kinetic experiments suggest that the catalysts bind stronger to the starting silyl ketene acetals than to transition structures thus leading to inefficient rearrangement reactions.
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Affiliation(s)
- Dominika Krištofíková
- Department of Organic Chemistry, Faculty of Natural Sciences, Comenius University in Bratislava, Mlynská dolina, Ilkovičova 6, 84215 Bratislava, Slovakia
| | - Juraj Filo
- Institute of Chemistry, Faculty of Natural Sciences, Comenius University in Bratislava, Mlynská dolina, Ilkovičova 6, 84215 Bratislava, Slovakia
| | - Mária Mečiarová
- Department of Organic Chemistry, Faculty of Natural Sciences, Comenius University in Bratislava, Mlynská dolina, Ilkovičova 6, 84215 Bratislava, Slovakia
| | - Radovan Šebesta
- Department of Organic Chemistry, Faculty of Natural Sciences, Comenius University in Bratislava, Mlynská dolina, Ilkovičova 6, 84215 Bratislava, Slovakia
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24
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Liang G, Ji Y, Liu H, Pang Y, Zhou B, Cheng M, Liu Y, Lin B, Liu Y. Silver Triflate/
N
‐Fluorobenzenesulfonimide‐Catalyzed Cycloisomerization of Tryptamine‐Ynamide to Spiro[indoline‐3,4′‐piperidine] Induced by Cation‐π‐π Interactions between Substrate and Metal Ligand. Adv Synth Catal 2019. [DOI: 10.1002/adsc.201901175] [Citation(s) in RCA: 8] [Impact Index Per Article: 1.6] [Reference Citation Analysis] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Indexed: 01/10/2023]
Affiliation(s)
- Guoduan Liang
- Key Laboratory of Structure-Based Drug Design and Discovery (Shenyang Pharmaceutical University)Ministry of Education Shenyang 110016 People's Republic of China
- Wuya College of InnovationShenyang Pharmaceutical University Shenyang 110016 People's Republic of China
- Institute of Drug Research inMedicine Capital of China Benxi 117000 People's Republic of China
| | - Yanjun Ji
- Key Laboratory of Structure-Based Drug Design and Discovery (Shenyang Pharmaceutical University)Ministry of Education Shenyang 110016 People's Republic of China
- Institute of Drug Research inMedicine Capital of China Benxi 117000 People's Republic of China
| | - Hairui Liu
- Key Laboratory of Structure-Based Drug Design and Discovery (Shenyang Pharmaceutical University)Ministry of Education Shenyang 110016 People's Republic of China
- Wuya College of InnovationShenyang Pharmaceutical University Shenyang 110016 People's Republic of China
- Institute of Drug Research inMedicine Capital of China Benxi 117000 People's Republic of China
| | - Yadong Pang
- Key Laboratory of Structure-Based Drug Design and Discovery (Shenyang Pharmaceutical University)Ministry of Education Shenyang 110016 People's Republic of China
- Wuya College of InnovationShenyang Pharmaceutical University Shenyang 110016 People's Republic of China
- Institute of Drug Research inMedicine Capital of China Benxi 117000 People's Republic of China
| | - Bojun Zhou
- Key Laboratory of Structure-Based Drug Design and Discovery (Shenyang Pharmaceutical University)Ministry of Education Shenyang 110016 People's Republic of China
- Wuya College of InnovationShenyang Pharmaceutical University Shenyang 110016 People's Republic of China
- Institute of Drug Research inMedicine Capital of China Benxi 117000 People's Republic of China
| | - Maosheng Cheng
- Key Laboratory of Structure-Based Drug Design and Discovery (Shenyang Pharmaceutical University)Ministry of Education Shenyang 110016 People's Republic of China
- Institute of Drug Research inMedicine Capital of China Benxi 117000 People's Republic of China
| | - Yang Liu
- Key Laboratory of Structure-Based Drug Design and Discovery (Shenyang Pharmaceutical University)Ministry of Education Shenyang 110016 People's Republic of China
| | - Bin Lin
- Key Laboratory of Structure-Based Drug Design and Discovery (Shenyang Pharmaceutical University)Ministry of Education Shenyang 110016 People's Republic of China
- Institute of Drug Research inMedicine Capital of China Benxi 117000 People's Republic of China
| | - Yongxiang Liu
- Key Laboratory of Structure-Based Drug Design and Discovery (Shenyang Pharmaceutical University)Ministry of Education Shenyang 110016 People's Republic of China
- Wuya College of InnovationShenyang Pharmaceutical University Shenyang 110016 People's Republic of China
- Institute of Drug Research inMedicine Capital of China Benxi 117000 People's Republic of China
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25
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Vik EC, Li P, Pellechia PJ, Shimizu KD. Transition-State Stabilization by n→π* Interactions Measured Using Molecular Rotors. J Am Chem Soc 2019; 141:16579-16583. [DOI: 10.1021/jacs.9b08542] [Citation(s) in RCA: 21] [Impact Index Per Article: 4.2] [Reference Citation Analysis] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Indexed: 12/19/2022]
Affiliation(s)
- Erik C. Vik
- Department of Chemistry and Biochemistry, University of South Carolina, Columbia, South Carolina 29208, United States
| | - Ping Li
- Department of Chemistry and Biochemistry, University of South Carolina, Columbia, South Carolina 29208, United States
| | - Perry J. Pellechia
- Department of Chemistry and Biochemistry, University of South Carolina, Columbia, South Carolina 29208, United States
| | - Ken D. Shimizu
- Department of Chemistry and Biochemistry, University of South Carolina, Columbia, South Carolina 29208, United States
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26
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Burke JR, La Clair JJ, Philippe RN, Pabis A, Corbella M, Jez JM, Cortina GA, Kaltenbach M, Bowman ME, Louie GV, Woods KB, Nelson AT, Tawfik DS, Kamerlin SC, Noel JP. Bifunctional Substrate Activation via an Arginine Residue Drives Catalysis in Chalcone Isomerases. ACS Catal 2019. [DOI: 10.1021/acscatal.9b01926] [Citation(s) in RCA: 7] [Impact Index Per Article: 1.4] [Reference Citation Analysis] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Indexed: 12/14/2022]
Affiliation(s)
- Jason R. Burke
- Howard Hughes Medical Institute, Jack H. Skirball Center for Chemical Biology and Proteomics, The Salk Institute for Biological Studies, La Jolla, California 92037, United States
| | - James J. La Clair
- Howard Hughes Medical Institute, Jack H. Skirball Center for Chemical Biology and Proteomics, The Salk Institute for Biological Studies, La Jolla, California 92037, United States
| | - Ryan N. Philippe
- Howard Hughes Medical Institute, Jack H. Skirball Center for Chemical Biology and Proteomics, The Salk Institute for Biological Studies, La Jolla, California 92037, United States
| | - Anna Pabis
- Department of Cell and Molecular Biology, Uppsala University, BMC Box 596, S-751 24 Uppsala, Sweden
| | - Marina Corbella
- Department of Chemistry−BMC, Uppsala University, BMC Box 576, S-751 23 Uppsala, Sweden
| | - Joseph M. Jez
- Howard Hughes Medical Institute, Jack H. Skirball Center for Chemical Biology and Proteomics, The Salk Institute for Biological Studies, La Jolla, California 92037, United States
| | - George A. Cortina
- Department of Molecular Physiology and Biomedical Engineering, University of Virginia, Charlottesville, Virginia 22903, United States
| | - Miriam Kaltenbach
- Department of Biomolecular Sciences, The Weizmann Institute of Science, Rehovot 76100, Israel
| | - Marianne E. Bowman
- Howard Hughes Medical Institute, Jack H. Skirball Center for Chemical Biology and Proteomics, The Salk Institute for Biological Studies, La Jolla, California 92037, United States
| | - Gordon V. Louie
- Howard Hughes Medical Institute, Jack H. Skirball Center for Chemical Biology and Proteomics, The Salk Institute for Biological Studies, La Jolla, California 92037, United States
| | - Katherine B. Woods
- Howard Hughes Medical Institute, Jack H. Skirball Center for Chemical Biology and Proteomics, The Salk Institute for Biological Studies, La Jolla, California 92037, United States
| | - Andrew T. Nelson
- Department of Chemistry, University of Texas at Austin, Austin, Texas 78712, United States
| | - Dan S. Tawfik
- Department of Biomolecular Sciences, The Weizmann Institute of Science, Rehovot 76100, Israel
| | - Shina C.L. Kamerlin
- Department of Chemistry−BMC, Uppsala University, BMC Box 576, S-751 23 Uppsala, Sweden
| | - Joseph P. Noel
- Howard Hughes Medical Institute, Jack H. Skirball Center for Chemical Biology and Proteomics, The Salk Institute for Biological Studies, La Jolla, California 92037, United States
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27
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Chen L, Xiao BX, Du W, Chen YC. Quaternary Phosphonium Salts as Active Brønsted Acid Catalysts for Friedel-Crafts Reactions. Org Lett 2019; 21:5733-5736. [PMID: 31264878 DOI: 10.1021/acs.orglett.9b02108] [Citation(s) in RCA: 20] [Impact Index Per Article: 4.0] [Reference Citation Analysis] [Abstract] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Indexed: 12/24/2022]
Abstract
A readily available quaternary phosphonium salt containing a trifluoroacetonyl group and a tetrakis[3,5-bis(trifluoromethyl)phenyl]borate (BArF4-) counterion was demonstrated to be a highly active Brønsted acid catalyst for Friedel-Crafts-type reactions of an array of electron-rich heteroarenes and aniline derivatives with isatin-derived ketimines, even at 0.1 mol % catalyst loadings.
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Affiliation(s)
- Lin Chen
- Key Laboratory of Drug-Targeting and Drug Delivery System of the Ministry of Education and Sichuan Research Center for Drug Precision Industrial Technology, West China School of Pharmacy , Sichuan University , Chengdu 610041 , China
| | - Ben-Xian Xiao
- Key Laboratory of Drug-Targeting and Drug Delivery System of the Ministry of Education and Sichuan Research Center for Drug Precision Industrial Technology, West China School of Pharmacy , Sichuan University , Chengdu 610041 , China
| | - Wei Du
- Key Laboratory of Drug-Targeting and Drug Delivery System of the Ministry of Education and Sichuan Research Center for Drug Precision Industrial Technology, West China School of Pharmacy , Sichuan University , Chengdu 610041 , China
| | - Ying-Chun Chen
- Key Laboratory of Drug-Targeting and Drug Delivery System of the Ministry of Education and Sichuan Research Center for Drug Precision Industrial Technology, West China School of Pharmacy , Sichuan University , Chengdu 610041 , China.,College of Pharmacy , Third Military Medical University , Shapingba , Chongqing 400038 , China
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28
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Dale HJA, Hodges GR, Lloyd-Jones GC. Taming Ambident Triazole Anions: Regioselective Ion Pairing Catalyzes Direct N-Alkylation with Atypical Regioselectivity. J Am Chem Soc 2019; 141:7181-7193. [DOI: 10.1021/jacs.9b02786] [Citation(s) in RCA: 19] [Impact Index Per Article: 3.8] [Reference Citation Analysis] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Indexed: 01/06/2023]
Affiliation(s)
- Harvey J. A. Dale
- EaStChem, University of Edinburgh, Joseph Black Building, David Brewster Road, Edinburgh, EH9 3FJ, U.K
| | - George R. Hodges
- Jealott’s Hill International Research Centre, Syngenta, Bracknell, Berkshire RG42 6EY, U.K
| | - Guy C. Lloyd-Jones
- EaStChem, University of Edinburgh, Joseph Black Building, David Brewster Road, Edinburgh, EH9 3FJ, U.K
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29
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Peňaška T, Mojzes MM, Filo J, Jurdáková H, Mečiarová M, Šebesta R. Organocatalysts Effect on the Stereoselectivity of [2,3]-Wittig Rearrangement. European J Org Chem 2019. [DOI: 10.1002/ejoc.201801697] [Citation(s) in RCA: 6] [Impact Index Per Article: 1.2] [Reference Citation Analysis] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Indexed: 12/13/2022]
Affiliation(s)
- Tibor Peňaška
- Department of Organic Chemistry; Faculty of Natural Sciences; Comenius University in Bratislava; Mlynská dolina, Ilkovičova 6 842 15 Bratislava Slovakia
| | - Melinda Meyer Mojzes
- Department of Organic Chemistry; Faculty of Natural Sciences; Comenius University in Bratislava; Mlynská dolina, Ilkovičova 6 842 15 Bratislava Slovakia
| | - Juraj Filo
- Institute of Chemistry; Faculty of Natural Sciences; Comenius University in Bratislava; Mlynská dolina, Ilkovičova 6 842 15 Bratislava Slovakia
| | - Helena Jurdáková
- Institute of Chemistry; Faculty of Natural Sciences; Comenius University in Bratislava; Mlynská dolina, Ilkovičova 6 842 15 Bratislava Slovakia
| | - Mária Mečiarová
- Department of Organic Chemistry; Faculty of Natural Sciences; Comenius University in Bratislava; Mlynská dolina, Ilkovičova 6 842 15 Bratislava Slovakia
| | - Radovan Šebesta
- Department of Organic Chemistry; Faculty of Natural Sciences; Comenius University in Bratislava; Mlynská dolina, Ilkovičova 6 842 15 Bratislava Slovakia
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30
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Affiliation(s)
- Shinji Yamada
- Department of Chemistry, Faculty of Science, Ochanomizu University, 2-1-1 Otsuka, Bunkyo-ku, Tokyo 112-8610, Japan
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31
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Smajlagic I, Durán R, Pilkington M, Dudding T. Cyclopropenium Enhanced Thiourea Catalysis. J Org Chem 2018; 83:13973-13980. [PMID: 30352160 DOI: 10.1021/acs.joc.8b02321] [Citation(s) in RCA: 16] [Impact Index Per Article: 2.7] [Reference Citation Analysis] [Abstract] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Indexed: 12/19/2022]
Abstract
An integral part of modern organocatalysis is the development and application of thiourea catalysts. Here, as part of our program aimed at developing cyclopropenium catalysts, the synthesis of a thiourea-cyclopropenium organocatalyst with both cationic hydrogen-bond donor and electrostatic character is reported. The utility of the this thiourea organocatalyst is showcased in pyranylation reactions employing phenols, primary, secondary, and tertiary alcohols under operationally simple and mild reaction conditions for a broad substrate scope. The addition of benzoic acid as a co-catalyst facilitating cooperative Brønsted acid catalysis was found to be valuable for reactions involving phenols and higher substituted alcohols. Mechanistic investigations, including kinetic and 1H NMR binding studies in conjunction with density function theory calculations, are described that collectively support a Brønsted acid mode of catalysis.
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Affiliation(s)
- Ivor Smajlagic
- Brock University , 1812 Sir Isaac Brock Way , St. Catharines , Ontario L2S 3A1 , Canada
| | - Rocio Durán
- Brock University , 1812 Sir Isaac Brock Way , St. Catharines , Ontario L2S 3A1 , Canada
| | - Melanie Pilkington
- Brock University , 1812 Sir Isaac Brock Way , St. Catharines , Ontario L2S 3A1 , Canada
| | - Travis Dudding
- Brock University , 1812 Sir Isaac Brock Way , St. Catharines , Ontario L2S 3A1 , Canada
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32
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Comparing quantitative prediction methods for the discovery of small-molecule chiral catalysts. Nat Rev Chem 2018. [DOI: 10.1038/s41570-018-0040-8] [Citation(s) in RCA: 82] [Impact Index Per Article: 13.7] [Reference Citation Analysis] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Indexed: 12/24/2022]
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33
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Whitley JW, Jeffrey Horne W, Shannon MS, Andrews MA, Terrell KL, Hayward SS, Yue S, Mittenthal MS, O'Harra KE, Bara JE. Systematic Investigation of the Photopolymerization of Imidazolium‐Based Ionic Liquid Styrene and Vinyl Monomers. ACTA ACUST UNITED AC 2018. [DOI: 10.1002/pola.29211] [Citation(s) in RCA: 11] [Impact Index Per Article: 1.8] [Reference Citation Analysis] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Indexed: 01/12/2023]
Affiliation(s)
- John W. Whitley
- Department of Chemical & Biological Engineering University of Alabama Tuscaloosa Alabama 35487‐0203 USA
| | - William Jeffrey Horne
- Department of Chemical & Biological Engineering University of Alabama Tuscaloosa Alabama 35487‐0203 USA
| | - Matthew S. Shannon
- Department of Chemical & Biological Engineering University of Alabama Tuscaloosa Alabama 35487‐0203 USA
| | - Mary A. Andrews
- Department of Chemical & Biological Engineering University of Alabama Tuscaloosa Alabama 35487‐0203 USA
| | - Kelsey L. Terrell
- Department of Chemical & Biological Engineering University of Alabama Tuscaloosa Alabama 35487‐0203 USA
| | - Spenser S. Hayward
- Department of Chemical & Biological Engineering University of Alabama Tuscaloosa Alabama 35487‐0203 USA
| | - Shuwen Yue
- Department of Chemical & Biological Engineering University of Alabama Tuscaloosa Alabama 35487‐0203 USA
| | - Max S. Mittenthal
- Department of Chemical & Biological Engineering University of Alabama Tuscaloosa Alabama 35487‐0203 USA
| | - Kathryn E. O'Harra
- Department of Chemical & Biological Engineering University of Alabama Tuscaloosa Alabama 35487‐0203 USA
| | - Jason E. Bara
- Department of Chemical & Biological Engineering University of Alabama Tuscaloosa Alabama 35487‐0203 USA
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34
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Yu Z, Jin Z, Duan M, Bai R, Lu Y, Lan Y. Toward a Predictive Understanding of Phosphine-Catalyzed [3 + 2] Annulation of Allenoates with Acrylate or Imine. J Org Chem 2018; 83:9729-9740. [PMID: 30113828 DOI: 10.1021/acs.joc.8b01259] [Citation(s) in RCA: 17] [Impact Index Per Article: 2.8] [Reference Citation Analysis] [Abstract] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Indexed: 12/16/2022]
Abstract
Both theoretical and experimental studies were performed to explore the mechanism, regioselectivity, and enantioselectivity of phosphine-catalyzed [3 + 2] annulation between allenoates and acrylate or imine. Using density functional theory computations, we predicted that the enantioselective determining step is the nucleophilic addition of acrylate or imine to the catalyst-activated allenoate. In the key step, we proposed two hydrogen bonding interaction models (intermolecular H-bond model and intramolecular H-bond model). For acrylate substrates, the reaction proceeds via the intramolecular H-bond model and the strong noncovalent interactions between the 2-naphthyl ester moiety lead to the re-face attack pathway being more favorable. For imine substrates, the intermolecular H-bond model operates. In the annulation process, the bulky n-propyl oriented toward a crowded, sterically demanding environment plays a significant role in asymmetric induction. The theoretical calculation results agreed with experimental observations, and these results provide valuable insight into catalyst design and understanding of mechanisms of related reactions.
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Affiliation(s)
- Zhaoyuan Yu
- School of Chemistry and Chemical Engineering , Chongqing University , Chongqing 400030 , China.,Department of Chemistry , National University of Singapore , 3 Science Drive 3 , Singapore 117543 , Singapore
| | - Zhichao Jin
- Department of Chemistry , National University of Singapore , 3 Science Drive 3 , Singapore 117543 , Singapore
| | - Meng Duan
- School of Chemistry and Chemical Engineering , Chongqing University , Chongqing 400030 , China
| | - Ruopeng Bai
- School of Chemistry and Chemical Engineering , Chongqing University , Chongqing 400030 , China
| | - Yixin Lu
- Department of Chemistry , National University of Singapore , 3 Science Drive 3 , Singapore 117543 , Singapore
| | - Yu Lan
- College of Chemistry and Molecular Engineering , Zhengzhou University , Zhengzhou 450001 , China.,School of Chemistry and Chemical Engineering , Chongqing University , Chongqing 400030 , China
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35
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Furukawa Y, Suzuki R, Nakashima T, Gramage-Doria R, Ohmatsu K, Ooi T. Protonated Bis-1,2,3-triazole as an Anion-Binding Chiral Brønsted Acid for Catalytic Asymmetric Friedel–Crafts Reaction of Indoles with Imines. BULLETIN OF THE CHEMICAL SOCIETY OF JAPAN 2018. [DOI: 10.1246/bcsj.20180098] [Citation(s) in RCA: 6] [Impact Index Per Article: 1.0] [Reference Citation Analysis] [Track Full Text] [Subscribe] [Scholar Register] [Indexed: 12/27/2022]
Affiliation(s)
- Yukino Furukawa
- Institute of Transformative Bio-Molecules (WPI-ITbM), and Department of Molecular and Macromolecular Chemistry, Graduate School of Engineering, Nagoya University, Chikusa, Nagoya, Aichi 464-8601, Japan
| | - Ryuhei Suzuki
- Institute of Transformative Bio-Molecules (WPI-ITbM), and Department of Molecular and Macromolecular Chemistry, Graduate School of Engineering, Nagoya University, Chikusa, Nagoya, Aichi 464-8601, Japan
| | - Tsubasa Nakashima
- Institute of Transformative Bio-Molecules (WPI-ITbM), and Department of Molecular and Macromolecular Chemistry, Graduate School of Engineering, Nagoya University, Chikusa, Nagoya, Aichi 464-8601, Japan
| | - Rafael Gramage-Doria
- Institute of Transformative Bio-Molecules (WPI-ITbM), and Department of Molecular and Macromolecular Chemistry, Graduate School of Engineering, Nagoya University, Chikusa, Nagoya, Aichi 464-8601, Japan
| | - Kohsuke Ohmatsu
- Institute of Transformative Bio-Molecules (WPI-ITbM), and Department of Molecular and Macromolecular Chemistry, Graduate School of Engineering, Nagoya University, Chikusa, Nagoya, Aichi 464-8601, Japan
| | - Takashi Ooi
- Institute of Transformative Bio-Molecules (WPI-ITbM), and Department of Molecular and Macromolecular Chemistry, Graduate School of Engineering, Nagoya University, Chikusa, Nagoya, Aichi 464-8601, Japan
- CREST, Japan Science and Technology Agency (JST), Chikusa, Nagoya, Aichi 464-8601, Japan
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36
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Khan B, Shah MR, Rabnawaz M. Synthesis of novel macrocycles carrying pincer-type ligands as future candidates for potential applications in size-selective, stereochemical and recyclable catalysts. J Mol Struct 2018. [DOI: 10.1016/j.molstruc.2017.11.040] [Citation(s) in RCA: 1] [Impact Index Per Article: 0.2] [Reference Citation Analysis] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Indexed: 01/07/2023]
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37
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Xue Y, Wang Y, Cao Z, Zhou J, Chen ZX. Computational insight into the cooperative role of non-covalent interactions in the aza-Henry reaction catalyzed by quinine derivatives: mechanism and enantioselectivity. Org Biomol Chem 2018; 14:9588-9597. [PMID: 27714327 DOI: 10.1039/c6ob01611a] [Citation(s) in RCA: 10] [Impact Index Per Article: 1.7] [Reference Citation Analysis] [Abstract] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Indexed: 12/19/2022]
Abstract
Density functional theory (DFT) calculations were performed to elucidate the mechanism and the origin of the high enantioselectivity of the aza-Henry reaction of isatin-derived N-Boc ketimine catalyzed by a quinine-derived catalyst (QN). The C-C bond formation step is found to be both the rate-determining and the stereo-controlled step. The results revealed the important role of the phenolic OH group in pre-organizing the complex of nitromethane and QN and stabilizing the in situ-generated nitronate and protonated QN. Three possible activation modes for C-C bond formation involving different coordination patterns of catalyst and substrates were studied, and it was found that both the ion pair-hydrogen bonding mode and the Brønsted acid-hydrogen bonding mode are viable, with the latter slightly preferred for the real catalytic system. The calculated enantiomeric excess (ee) favouring the S enantiomer is in good agreement with the experimental result. The high reactivity and enantioselectivity can be ascribed to the cooperative role of the multiple non-covalent interactions, including classical and non-classical H bonding as well as anionπ interactions. These results also highlight the importance of the inclusion of dispersion correction for achieving a reasonable agreement between theory and experiment for the current reaction.
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Affiliation(s)
- Yunsheng Xue
- Institute of Theoretical and Computational Chemistry, Key Laboratory of Mesoscopic Chemistry of MOE, School of Chemistry and Chemical Engineering, Nanjing University, Nanjing, 210093, P. R. China. and School of Pharmacy, Xuzhou Medical University, No. 209, Tongshan Road, Xuzhou, 221004, P. R. China
| | - Yuhui Wang
- Shanghai Key Laboratory of Green Chemistry and Chemical Processes, East China Normal University, 3663 N. Zhongshan Road, Shanghai, 200062, P. R. China
| | - Zhongyan Cao
- Shanghai Key Laboratory of Green Chemistry and Chemical Processes, East China Normal University, 3663 N. Zhongshan Road, Shanghai, 200062, P. R. China
| | - Jian Zhou
- Shanghai Key Laboratory of Green Chemistry and Chemical Processes, East China Normal University, 3663 N. Zhongshan Road, Shanghai, 200062, P. R. China
| | - Zhao-Xu Chen
- Institute of Theoretical and Computational Chemistry, Key Laboratory of Mesoscopic Chemistry of MOE, School of Chemistry and Chemical Engineering, Nanjing University, Nanjing, 210093, P. R. China.
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38
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Peng Q, Duarte F, Paton RS. Computing organic stereoselectivity - from concepts to quantitative calculations and predictions. Chem Soc Rev 2018; 45:6093-6107. [PMID: 27722685 DOI: 10.1039/c6cs00573j] [Citation(s) in RCA: 156] [Impact Index Per Article: 26.0] [Reference Citation Analysis] [Abstract] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Indexed: 01/10/2023]
Abstract
Advances in theory and processing power have established computation as a valuable interpretative and predictive tool in the discovery of new asymmetric catalysts. This tutorial review outlines the theory and practice of modeling stereoselective reactions. Recent examples illustrate how an understanding of the fundamental principles and the application of state-of-the-art computational methods may be used to gain mechanistic insight into organic and organometallic reactions. We highlight the emerging potential of this computational tool-box in providing meaningful predictions for the rational design of asymmetric catalysts. We present an accessible account of the field to encourage future synergy between computation and experiment.
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Affiliation(s)
- Qian Peng
- Chemistry Research Laboratory, Department of Chemistry, University of Oxford, 12 Mansfield Road, Oxford OX1 3TA, UK. and Physical and Theoretical Chemistry Laboratory, University of Oxford, South Parks Road, Oxford OX1 3QZ, UK
| | - Fernanda Duarte
- Chemistry Research Laboratory, Department of Chemistry, University of Oxford, 12 Mansfield Road, Oxford OX1 3TA, UK. and Physical and Theoretical Chemistry Laboratory, University of Oxford, South Parks Road, Oxford OX1 3QZ, UK
| | - Robert S Paton
- Chemistry Research Laboratory, Department of Chemistry, University of Oxford, 12 Mansfield Road, Oxford OX1 3TA, UK. and Physical and Theoretical Chemistry Laboratory, University of Oxford, South Parks Road, Oxford OX1 3QZ, UK
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39
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Dong S, Feng X, Liu X. Chiral guanidines and their derivatives in asymmetric synthesis. Chem Soc Rev 2018; 47:8525-8540. [DOI: 10.1039/c7cs00792b] [Citation(s) in RCA: 70] [Impact Index Per Article: 11.7] [Reference Citation Analysis] [Abstract] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Indexed: 01/12/2023]
Abstract
This article reviews current achievements of chiral guanidines and their derivatives in organocatalysis, and updates versatile guanidine–metal salt combinations in asymmetric catalytic reactions.
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Affiliation(s)
- Shunxi Dong
- Key Laboratory of Green Chemistry & Technology
- Ministry of Education
- College of Chemistry
- Sichuan University
- Chengdu 610064
| | - Xiaoming Feng
- Key Laboratory of Green Chemistry & Technology
- Ministry of Education
- College of Chemistry
- Sichuan University
- Chengdu 610064
| | - Xiaohua Liu
- Key Laboratory of Green Chemistry & Technology
- Ministry of Education
- College of Chemistry
- Sichuan University
- Chengdu 610064
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40
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Oliveira V, Kraka E. Systematic Coupled Cluster Study of Noncovalent Interactions Involving Halogens, Chalcogens, and Pnicogens. J Phys Chem A 2017; 121:9544-9556. [PMID: 29154546 DOI: 10.1021/acs.jpca.7b10196] [Citation(s) in RCA: 60] [Impact Index Per Article: 8.6] [Reference Citation Analysis] [Abstract] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Indexed: 11/30/2022]
Abstract
The noncovalent interactions of 32 complexes involving pnicogens, chalcogens, and halogens atoms were investigated at the CCSD(T)/aug-cc-pVTZ level of theory. Two different types of complexes could be distinguished on the basis of geometric parameters, electron difference densities, and the charge transfer mechanisms associated with each type. In the type I conformation, the monomers adopt a skewed orientation allowing charge to be transfer between both monomers, whereas in the type II conformation the monomers adopt a linear arrangement, maximizing charge transfer in only one direction. Type I complexes involving the interaction between pnicogens and chalcogens cannot be unambiguously defined as chalcogen or pnicogen bonds, they are an admixture of both. The charge transfer dependence on the conformation adopted by the complexes described in this work can serve as a novel conformationally driven design concept for materials.
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Affiliation(s)
- Vytor Oliveira
- Computational and Theoretical Chemistry Group (CATCO), Department of Chemistry, Southern Methodist University , 3215 Daniel Ave, Dallas, Texas 75275-0314, United States
| | - Elfi Kraka
- Computational and Theoretical Chemistry Group (CATCO), Department of Chemistry, Southern Methodist University , 3215 Daniel Ave, Dallas, Texas 75275-0314, United States
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41
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Maji R, Champagne PA, Houk KN, Wheeler SE. Activation Mode and Origin of Selectivity in Chiral Phosphoric Acid-Catalyzed Oxacycle Formation by Intramolecular Oxetane Desymmetrizations. ACS Catal 2017. [DOI: 10.1021/acscatal.7b02993] [Citation(s) in RCA: 37] [Impact Index Per Article: 5.3] [Reference Citation Analysis] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Indexed: 12/29/2022]
Affiliation(s)
- Rajat Maji
- Department of Chemistry, Texas A&M University, College Station, Texas 77842, United States
| | - Pier Alexandre Champagne
- Department
of Chemistry and Biochemistry, University of California, Los Angeles, California 90095, United States
| | - K. N. Houk
- Department
of Chemistry and Biochemistry, University of California, Los Angeles, California 90095, United States
| | - Steven E. Wheeler
- Department of Chemistry, Texas A&M University, College Station, Texas 77842, United States
- Center
for Computational Quantum Chemistry, Department of Chemistry, University of Georgia, Athens, Georgia 30602, United States
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42
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Maji R, Wheeler SE. Importance of Electrostatic Effects in the Stereoselectivity of NHC-Catalyzed Kinetic Resolutions. J Am Chem Soc 2017; 139:12441-12449. [DOI: 10.1021/jacs.7b01796] [Citation(s) in RCA: 32] [Impact Index Per Article: 4.6] [Reference Citation Analysis] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Indexed: 01/12/2023]
Affiliation(s)
- Rajat Maji
- Department of Chemistry, Texas A&M University, College Station, Texas 77843, United States
| | - Steven E. Wheeler
- Department of Chemistry, Texas A&M University, College Station, Texas 77843, United States
- Center
for Computational Quantum Chemistry, Department of Chemistry, University of Georgia, Athens, Georgia 30602, United States
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43
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44
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Neel AJ, Hilton MJ, Sigman MS, Toste FD. Exploiting non-covalent π interactions for catalyst design. Nature 2017; 543:637-646. [PMID: 28358089 PMCID: PMC5907483 DOI: 10.1038/nature21701] [Citation(s) in RCA: 519] [Impact Index Per Article: 74.1] [Reference Citation Analysis] [Abstract] [MESH Headings] [Grants] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Received: 08/16/2016] [Accepted: 01/27/2017] [Indexed: 12/18/2022]
Abstract
Molecular recognition, binding and catalysis are often mediated by non-covalent interactions involving aromatic functional groups. Although the relative complexity of these so-called π interactions has made them challenging to study, theory and modelling have now reached the stage at which we can explain their physical origins and obtain reliable insight into their effects on molecular binding and chemical transformations. This offers opportunities for the rational manipulation of these complex non-covalent interactions and their direct incorporation into the design of small-molecule catalysts and enzymes.
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Affiliation(s)
- Andrew J Neel
- Chemical Sciences Division, Lawrence Berkeley National Laboratory, Berkeley, California 94720, USA
- Department of Chemistry, University of California, Berkeley, California 94720, USA
| | - Margaret J Hilton
- Department of Chemistry, University of Utah, 315 South 1400 East, Salt Lake City, Utah 84112, USA
| | - Matthew S Sigman
- Department of Chemistry, University of Utah, 315 South 1400 East, Salt Lake City, Utah 84112, USA
| | - F Dean Toste
- Chemical Sciences Division, Lawrence Berkeley National Laboratory, Berkeley, California 94720, USA
- Department of Chemistry, University of California, Berkeley, California 94720, USA
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45
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Samoilichenko Y, Kondratenko V, Ezernitskaya M, Lyssenko K, Peregudov A, Khrustalev V, Maleev V, Moskalenko M, North M, Tsaloev A, Gugkaeva ZT, Belokon Y. A mechanistic study of the Lewis acid–Brønsted base–Brønsted acid catalysed asymmetric Michael addition of diethyl malonate to cyclohexenone. Catal Sci Technol 2017. [DOI: 10.1039/c6cy01697a] [Citation(s) in RCA: 6] [Impact Index Per Article: 0.9] [Reference Citation Analysis] [Abstract] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Indexed: 11/21/2022]
Abstract
Reaction shown to exhibit biomimetic behaviour.
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Affiliation(s)
- Yuri Samoilichenko
- A. N. Nesmeyanov Institute of Organoelement Compounds
- Russian Academy of Sciences
- Russian Federation
| | - Veronica Kondratenko
- A. N. Nesmeyanov Institute of Organoelement Compounds
- Russian Academy of Sciences
- Russian Federation
| | - Mariam Ezernitskaya
- A. N. Nesmeyanov Institute of Organoelement Compounds
- Russian Academy of Sciences
- Russian Federation
| | - Konstantin Lyssenko
- A. N. Nesmeyanov Institute of Organoelement Compounds
- Russian Academy of Sciences
- Russian Federation
| | - Alexander Peregudov
- A. N. Nesmeyanov Institute of Organoelement Compounds
- Russian Academy of Sciences
- Russian Federation
| | - Victor Khrustalev
- A. N. Nesmeyanov Institute of Organoelement Compounds
- Russian Academy of Sciences
- Russian Federation
- Peoples' Friendship University of Russia
- Russian Federation
| | - Victor Maleev
- A. N. Nesmeyanov Institute of Organoelement Compounds
- Russian Academy of Sciences
- Russian Federation
| | - Margarita Moskalenko
- A. N. Nesmeyanov Institute of Organoelement Compounds
- Russian Academy of Sciences
- Russian Federation
| | - Michael North
- Green Chemistry Centre of Excellence
- Department of Chemistry
- The University of York
- York
- YO10 5DD UK
| | - Alan Tsaloev
- Chemical Diversity Research Institute
- Khimki
- Russian Federation
| | - Zalina T. Gugkaeva
- A. N. Nesmeyanov Institute of Organoelement Compounds
- Russian Academy of Sciences
- Russian Federation
| | - Yuri Belokon
- A. N. Nesmeyanov Institute of Organoelement Compounds
- Russian Academy of Sciences
- Russian Federation
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46
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Krenske EH, Burns JM, McGeary RP. Claisen rearrangements of benzyl vinyl ethers: theoretical investigation of mechanism, substituent effects, and regioselectivity. Org Biomol Chem 2017; 15:7887-7893. [DOI: 10.1039/c7ob01666b] [Citation(s) in RCA: 6] [Impact Index Per Article: 0.9] [Reference Citation Analysis] [Abstract] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Indexed: 11/21/2022]
Abstract
Theoretical calculations are reported which examine the mechanisms of Claisen rearrangements of benzyl vinyl ethers and the ways in which substituents influence reactivity and regioselectivity.
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Affiliation(s)
- Elizabeth H. Krenske
- School of Chemistry and Molecular Biosciences
- The University of Queensland
- Brisbane
- Australia
| | - Jed M. Burns
- School of Chemistry and Molecular Biosciences
- The University of Queensland
- Brisbane
- Australia
| | - Ross P. McGeary
- School of Chemistry and Molecular Biosciences
- The University of Queensland
- Brisbane
- Australia
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47
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Yaghoubi Kalurazi S, Rad-Moghadam K, Moradi S. Efficient catalytic application of a binary ionic liquid mixture in the synthesis of novel spiro[4H-pyridine-oxindoles]. NEW J CHEM 2017. [DOI: 10.1039/c7nj01858d] [Citation(s) in RCA: 13] [Impact Index Per Article: 1.9] [Reference Citation Analysis] [Abstract] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Indexed: 01/29/2023]
Abstract
Novel pyrazole-fused spiro[4H-pyridine-oxindoles] were synthesized under the catalysis of the binary ionic liquid mixture [1,1,3,3-tetramethylguanidinium chloride][1-methylimidazolium-3-sulfonate] in solvent-free conditions.
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Affiliation(s)
| | | | - Shahram Moradi
- Chemistry Department
- Islamic Azad University
- Tehran North Branch
- Iran
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48
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Reddi Y, Sunoj RB. Origin of Stereoselectivity in Cooperative Asymmetric Catalysis Involving N-Heterocyclic Carbenes and Lewis Acids toward the Synthesis of Spirooxindole Lactone. ACS Catal 2016. [DOI: 10.1021/acscatal.6b03026] [Citation(s) in RCA: 69] [Impact Index Per Article: 8.6] [Reference Citation Analysis] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Indexed: 02/01/2023]
Affiliation(s)
- Yernaidu Reddi
- Department of Chemistry, Indian Institute of Technology Bombay, Powai, Mumbai 400076, India
| | - Raghavan B. Sunoj
- Department of Chemistry, Indian Institute of Technology Bombay, Powai, Mumbai 400076, India
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49
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Pareek M, Sunoj RB. Mechanism and Stereoselectivity in an Asymmetric N-Heterocyclic Carbene-Catalyzed Carbon–Carbon Bond Activation Reaction. Org Lett 2016; 18:5932-5935. [DOI: 10.1021/acs.orglett.6b03043] [Citation(s) in RCA: 26] [Impact Index Per Article: 3.3] [Reference Citation Analysis] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Indexed: 11/29/2022]
Affiliation(s)
- Monika Pareek
- Department of Chemistry, Indian Institute of Technology Bombay, Powai, Mumbai 400076, India
| | - Raghavan B. Sunoj
- Department of Chemistry, Indian Institute of Technology Bombay, Powai, Mumbai 400076, India
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50
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Kennedy CR, Lin S, Jacobsen EN. The Cation-π Interaction in Small-Molecule Catalysis. Angew Chem Int Ed Engl 2016; 55:12596-624. [PMID: 27329991 PMCID: PMC5096794 DOI: 10.1002/anie.201600547] [Citation(s) in RCA: 178] [Impact Index Per Article: 22.3] [Reference Citation Analysis] [Abstract] [Key Words] [MESH Headings] [Grants] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Received: 01/18/2016] [Indexed: 11/11/2022]
Abstract
Catalysis by small molecules (≤1000 Da, 10(-9) m) that are capable of binding and activating substrates through attractive, noncovalent interactions has emerged as an important approach in organic and organometallic chemistry. While the canonical noncovalent interactions, including hydrogen bonding, ion pairing, and π stacking, have become mainstays of catalyst design, the cation-π interaction has been comparatively underutilized in this context since its discovery in the 1980s. However, like a hydrogen bond, the cation-π interaction exhibits a typical binding affinity of several kcal mol(-1) with substantial directionality. These properties render it attractive as a design element for the development of small-molecule catalysts, and in recent years, the catalysis community has begun to take advantage of these features, drawing inspiration from pioneering research in molecular recognition and structural biology. This Review surveys the burgeoning application of the cation-π interaction in catalysis.
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Affiliation(s)
- C Rose Kennedy
- Department of Chemistry and Chemical Biology, Harvard University, 12 Oxford St, Cambridge, MA, 02138, USA
| | - Song Lin
- Department of Chemistry, University of California, Berkeley, 535 Latimer Hall, Berkeley, CA, 94720, USA
| | - Eric N Jacobsen
- Department of Chemistry and Chemical Biology, Harvard University, 12 Oxford St, Cambridge, MA, 02138, USA.
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