1
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Luo W, Xu F, Wang Z, Pang J, Wang Z, Sun Z, Peng A, Cao X, Li L. Chemodivergent Staudinger Reactions of Secondary Phosphine Oxides and Application to the Total Synthesis of LL-D05139β Potassium Salt. Angew Chem Int Ed Engl 2023; 62:e202310118. [PMID: 37594845 DOI: 10.1002/anie.202310118] [Citation(s) in RCA: 0] [Impact Index Per Article: 0] [Reference Citation Analysis] [Abstract] [Key Words] [Grants] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Received: 07/16/2023] [Revised: 08/15/2023] [Accepted: 08/16/2023] [Indexed: 08/19/2023]
Abstract
Unprecedented Staudinger reaction modes of secondary phosphine oxides (SPO) and organic azides are herein disclosed. By the application of various additives, selective nitrogen atom exclusion from the azide group has been achieved. Chlorotrimethylsilane mediates a stereoretentive Staudinger reaction with a 2-N exclusion which provides a valuable method for the synthesis of phosphinic amides and can be considered complementary to the stereoinvertive Atherton-Todd reaction. Alternatively, a 1-N exclusion pathway is promoted by acetic acid to provide the corresponding diazo compound. The effectiveness of this protocol has been further demonstrated by the total synthesis of the diazo-containing natural product LL-D05139β, which was prepared as a potassium salt for the first time in 6 steps and 26.5 % overall yield.
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Affiliation(s)
- Wenjun Luo
- School of Chemistry, Sun Yat-sen University, 510275, Guangzhou, P. R. China
- PCFM Lab and GDHPRC Lab, Sun Yat-sen University, 510275, Guangzhou, P. R. China
| | - Fang Xu
- International Cooperative Laboratory of Traditional Chinese Medicine Modernization and Innovative Drug Development, Ministry of Education (MOE) of P. R. China, College of Pharmacy, Jinan University, 510632, Guangzhou, Guangdong, P. R. China
| | - Zhenguo Wang
- School of Chemistry, Sun Yat-sen University, 510275, Guangzhou, P. R. China
- PCFM Lab and GDHPRC Lab, Sun Yat-sen University, 510275, Guangzhou, P. R. China
| | - Jiyan Pang
- School of Chemistry, Sun Yat-sen University, 510275, Guangzhou, P. R. China
| | - Zixu Wang
- School of Chemistry, Sun Yat-sen University, 510275, Guangzhou, P. R. China
- PCFM Lab and GDHPRC Lab, Sun Yat-sen University, 510275, Guangzhou, P. R. China
| | - Zhixiu Sun
- School of Chemistry, Sun Yat-sen University, 510275, Guangzhou, P. R. China
- PCFM Lab and GDHPRC Lab, Sun Yat-sen University, 510275, Guangzhou, P. R. China
| | - Aiyun Peng
- School of Chemistry, Sun Yat-sen University, 510275, Guangzhou, P. R. China
| | - Xiaohui Cao
- School of Pharmacy, Guangdong Pharmaceutical University, 510006, Guangzhou, P. R. China
| | - Le Li
- School of Chemistry, Sun Yat-sen University, 510275, Guangzhou, P. R. China
- PCFM Lab and GDHPRC Lab, Sun Yat-sen University, 510275, Guangzhou, P. R. China
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2
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Xu Z, DiBello M, Wang Z, Rose JA, Chen L, Li X, Herzon SB. Stereocontrolled Synthesis of the Fully Glycosylated Monomeric Unit of Lomaiviticin A. J Am Chem Soc 2022; 144:16199-16205. [PMID: 35998350 DOI: 10.1021/jacs.2c07631] [Citation(s) in RCA: 0] [Impact Index Per Article: 0] [Reference Citation Analysis] [Abstract] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Indexed: 11/30/2022]
Abstract
We describe a stereocontrolled synthesis of 3, the fully glycosylated monomeric unit of the dimeric cytotoxic bacterial metabolite (-)-lomaiviticin A (2). A novel strategy involving convergent, site- and stereoselective coupling of the β,γ-unsaturated ketone 6 and the naphthyl bromide 7 (92%, 15:1 diastereomeric ratio (dr)), followed by radical-based annulation and silyl ether cleavage, provided the tetracycle 5 (57% overall), which contains the carbon skeleton of the aglycon of 3. The β-linked 2,4,6-trideoxy-4-aminoglycoside l-pyrrolosamine was installed in 73% yield and with 15:1 β:α selectivity using a modified Koenigs-Knorr glycosylation. The diazo substituent was introduced via direct diazo transfer to an electron-rich benzoindene (4 → 27). The α-linked 2,6-dideoxyglycoside l-oleandrose was introduced by gold-catalyzed activation of an o-alkynyl glycosylbenzoate (75%, >20:1 α:β selectivity). A carefully orchestrated endgame sequence then provided efficient access to 3. Cell viability studies indicated that monomer 3 is not cytotoxic at concentrations up to 1 μM, providing conclusive evidence that the dimeric structure of (-)-lomaiviticin A (2) is required for cytotoxic effects. The preparation of 3 provides a foundation to complete the synthesis of (-)-lomaiviticin A (2) itself.
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Affiliation(s)
- Zhi Xu
- Department of Chemistry, Yale University, New Haven, Connecticut06520, United States
| | - Mikaela DiBello
- Department of Chemistry, Yale University, New Haven, Connecticut06520, United States
| | - Zechun Wang
- Department of Chemistry, Yale University, New Haven, Connecticut06520, United States
| | - John A Rose
- Department of Chemistry, Yale University, New Haven, Connecticut06520, United States
| | - Lei Chen
- Department of Chemistry, Yale University, New Haven, Connecticut06520, United States
| | - Xin Li
- Department of Chemistry, Yale University, New Haven, Connecticut06520, United States
| | - Seth B Herzon
- Department of Chemistry, Yale University, New Haven, Connecticut06520, United States.,Departments of Pharmacology and Therapeutic Radiology, Yale School of Medicine, New Haven, Connecticut06520, United States
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3
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Kim LJ, Xue M, Li X, Xu Z, Paulson E, Mercado B, Nelson HM, Herzon SB. Structure Revision of the Lomaiviticins. J Am Chem Soc 2021; 143:6578-6585. [DOI: 10.1021/jacs.1c01729] [Citation(s) in RCA: 14] [Impact Index Per Article: 4.7] [Reference Citation Analysis] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Indexed: 12/31/2022]
Affiliation(s)
- Lee Joon Kim
- Department of Chemistry and Biochemistry, University of California, Los Angeles, California 90095, United States
| | - Mengzhao Xue
- Department of Chemistry, Yale University, New Haven, Connecticut 06511, United States
| | - Xin Li
- Department of Chemistry, Yale University, New Haven, Connecticut 06511, United States
| | - Zhi Xu
- Department of Chemistry, Yale University, New Haven, Connecticut 06511, United States
| | - Eric Paulson
- Department of Chemistry, Yale University, New Haven, Connecticut 06511, United States
- Chemical and Biological Instrumentation Center, Yale University, New Haven, Connecticut 06511, United States
| | - Brandon Mercado
- Department of Chemistry, Yale University, New Haven, Connecticut 06511, United States
- Chemical and Biological Instrumentation Center, Yale University, New Haven, Connecticut 06511, United States
| | - Hosea M. Nelson
- Department of Chemistry and Biochemistry, University of California, Los Angeles, California 90095, United States
| | - Seth B. Herzon
- Department of Chemistry, Yale University, New Haven, Connecticut 06511, United States
- Department of Pharmacology, Yale School of Medicine, New Haven, Connecticut 06510, United States
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4
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Hsu IT, Tomanik M, Herzon SB. Metric-Based Analysis of Convergence in Complex Molecule Synthesis. Acc Chem Res 2021; 54:903-916. [PMID: 33523640 DOI: 10.1021/acs.accounts.0c00817] [Citation(s) in RCA: 3] [Impact Index Per Article: 1.0] [Reference Citation Analysis] [Abstract] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Indexed: 11/30/2022]
Abstract
Convergent syntheses are characterized by the coupling of two or more synthetic intermediates of similar complexity, often late in a pathway. At its limit, a fully convergent synthesis is achieved when commercial or otherwise readily available intermediates are coupled to form the final target in a single step. Of course, in all but exceptional circumstances this level of convergence is purely hypothetical; in practice, additional steps are typically required to progress from fragment coupling to the target. Additionally, the length of the sequence required to access each target is a primary consideration in synthetic design.In this Account, we provide an overview of alkaloid, polyketide, and diterpene metabolites synthesized in our laboratory and present parameters that may be used to put the degree of convergence of each synthesis on quantitative footing. We begin with our syntheses of the antiproliferative, antimicrobial bacterial metabolite (-)-kinamycin F (1) and related dimeric structure (-)-lomaiviticin aglycon (2). These synthetic routes featured a three-step sequence to construct a complex diazocyclopentadiene found in both targets and an oxidative dimerization to unite the two halves of (-)-lomaiviticin aglycon (2). We then follow with our synthesis of the antineurodegenerative alkaloid (-)-huperzine A (3). Our route to (-)-huperzine A (3) employed a diastereoselective three-component coupling reaction, followed by the intramolecular α-arylation of a β-ketonitrile intermediate, to form the carbon skeleton of the target. We then present our syntheses of the hasubanan alkaloids (-)-hasubanonine (4), (-)-delavayine (5), (-)-runanine (6), (+)-periglaucine B (7), and (-)-acutumine (8). These alkaloids bear a 7-azatricyclo[4.3.3.01,6]dodecane (propellane) core and a highly oxidized cyclohexenone ring. The propellane structure was assembled by the addition of an aryl acetylide to a complex iminium ion, followed by intramolecular 1,4-addition. We then present our synthesis of the guanidinium alkaloid (+)-batzelladine B (9), which contains two complex polycyclic guanidine residues united by an ester linkage. This target was logically disconnected by an esterification to allow for the independent synthesis of each guanidine residue. A carefully orchestrated cascade reaction provided (+)-batzelladine B (9) in a single step following fragment coupling by esterification. We then discuss our synthesis of the diterpene fungal metabolite (+)-pleuromutilin (10). The synthesis of (+)-pleuromutilin (10) proceeded via a fragment coupling involving two neopentylic reagents and employed a nickel-catalyzed reductive cyclization reaction to close the eight-membered ring, ultimately providing access to (+)-pleuromutilin (10), (+)-12-epi-pleuromutilin (11), and (+)-12-epi-mutilin (12). Finally, we discuss our synthesis of (-)-myrocin G (13), a tricyclic pimarane diterpene that was assembled by a convergent annulation.In the final section of this Account, we present several paramaters to analyze and quantitatively assess the degree of convergence of each synthesis. These parameters include: (1) the number of steps required following the point of convergence, (2) the difference in the number of steps required to prepare each coupling partner, (3) the percentage of carbons (or, more broadly, atoms) present at the point of convergence, and (4) the complexity generated in the fragment coupling step. While not an exhaustive list, these parameters bring the strengths and weaknesses each synthetic strategy to light, emphasizing the key contributors to the degree of convergence of each route while also highlighting the nuances of these analyses.
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Affiliation(s)
- Ian Tingyung Hsu
- Department of Chemistry, Yale University, New Haven, Connecticut 06520, United States
| | - Martin Tomanik
- Department of Chemistry, Yale University, New Haven, Connecticut 06520, United States
| | - Seth B. Herzon
- Department of Chemistry, Yale University, New Haven, Connecticut 06520, United States
- Department of Pharmacology, Yale School of Medicine, New Haven, Connecticut 06520, United States
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5
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Sun J, Yang H, Tang W. Recent advances in total syntheses of complex dimeric natural products. Chem Soc Rev 2021; 50:2320-2336. [PMID: 33470268 DOI: 10.1039/d0cs00220h] [Citation(s) in RCA: 15] [Impact Index Per Article: 5.0] [Reference Citation Analysis] [Abstract] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Indexed: 12/20/2022]
Abstract
Dimeric natural products are a collection of molecules with diverse molecular architectures and significant bio-activities. In this tutorial review, total synthesis of complex dimeric natural products accomplished in recent years are summarized and various dimerization strategies are discussed. By highlighting the selected representative examples, this review aims to demonstrate the recent tactics of dimerization which is an important process integrated into the whole synthetic sequences of dimeric natural products, provide insights on structural and chemical properties of monomers and dimers of related natural products, and promote further technological advances in organic synthesis and biological studies of complex dimeric natural products.
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Affiliation(s)
- Jiawei Sun
- State Key Laboratory of Bio-Organic & Natural Products Chemistry, Center for Excellence in Molecular Synthesis, Shanghai Institute of Organic Chemistry, University of Chinese Academy of Sciences, Chinese Academy of Sciences, 345 Lingling Road, Shanghai 200032, China.
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6
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Kaneko M, Li Z, Burk M, Colis L, Herzon SB. Synthesis and Biological Evaluation of (2 S,2' S)-Lomaiviticin A. J Am Chem Soc 2021; 143:1126-1132. [PMID: 33410680 PMCID: PMC8174553 DOI: 10.1021/jacs.0c11960] [Citation(s) in RCA: 6] [Impact Index Per Article: 2.0] [Reference Citation Analysis] [Abstract] [MESH Headings] [Grants] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Indexed: 01/19/2023]
Abstract
(-)-Lomaiviticin A (1) is a genotoxic C2-symmetric metabolite that arises from the formal dimerization of two bis(glycosylated) diazotetrahydrobenzo[b]fluorenes. Here we present a synthesis of the monomer 17 and its coupling to form (2S,2'S)-lomaiviticin A (4), an unnatural diastereomer of 1. (2S,2'S)-Lomaiviticin A (4) is significantly less genotoxic, a result we attribute to changes in the orientation of the diazofluorene and carbohydrate residues, relative to 1. These data bring the importance of the configuration of the conjoining bond to light and place the total synthesis of 1 itself within reach.
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Affiliation(s)
- Miho Kaneko
- Department of Chemistry, Yale University, New Haven, Connecticut 06520, United States
| | - Zhenwu Li
- Department of Chemistry, Yale University, New Haven, Connecticut 06520, United States
| | - Matthew Burk
- Department of Chemistry, Yale University, New Haven, Connecticut 06520, United States
| | - Laureen Colis
- Department of Chemistry, Yale University, New Haven, Connecticut 06520, United States
| | - Seth B. Herzon
- Department of Chemistry, Yale University, New Haven, Connecticut 06520, United States
- Department of Pharmacology, Yale School of Medicine, New Haven, Connecticut 06520, United States
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7
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Chen W, Liu Q. Recent Advances in the Oxidative Coupling Reaction of Enol Derivatives. CHINESE J ORG CHEM 2021. [DOI: 10.6023/cjoc202104058] [Citation(s) in RCA: 1] [Impact Index Per Article: 0.3] [Reference Citation Analysis] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Indexed: 12/14/2022]
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8
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Nicolaou KC, Chen Q, Li R, Anami Y, Tsuchikama K. Total Synthesis of the Monomeric Unit of Lomaiviticin A. J Am Chem Soc 2020; 142:20201-20207. [DOI: 10.1021/jacs.0c10660] [Citation(s) in RCA: 9] [Impact Index Per Article: 2.3] [Reference Citation Analysis] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Indexed: 12/11/2022]
Affiliation(s)
- K. C. Nicolaou
- Department of Chemistry, BioScience Research Collaborative, Rice University, 6100 Main Street, Houston, Texas 77005, United States
| | - Qifeng Chen
- Department of Chemistry, BioScience Research Collaborative, Rice University, 6100 Main Street, Houston, Texas 77005, United States
| | - Ruofan Li
- Department of Chemistry, BioScience Research Collaborative, Rice University, 6100 Main Street, Houston, Texas 77005, United States
| | - Yasuaki Anami
- Texas Therapeutics Institute, The Brown Foundation Institute of Molecular Medicine, The University of Texas Health Science Center at Houston, 1881 East Road, Houston, Texas 77054, United States
| | - Kyoji Tsuchikama
- Texas Therapeutics Institute, The Brown Foundation Institute of Molecular Medicine, The University of Texas Health Science Center at Houston, 1881 East Road, Houston, Texas 77054, United States
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9
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Rose JA, Mahapatra S, Li X, Wang C, Chen L, Swick SM, Herzon SB. Synthesis of the bis(cyclohexenone) core of (-)-lomaiviticin A. Chem Sci 2020; 11:7462-7467. [PMID: 34123029 PMCID: PMC8159427 DOI: 10.1039/d0sc02770g] [Citation(s) in RCA: 5] [Impact Index Per Article: 1.3] [Reference Citation Analysis] [Abstract] [Track Full Text] [Download PDF] [Figures] [Journal Information] [Subscribe] [Scholar Register] [Indexed: 01/01/2023] Open
Abstract
(-)-Lomaiviticin A is a complex C 2-symmetric bacterial metabolite comprising two diazotetrahydrobenzo[b]fluorene (diazofluorene) residues and four 2,6-dideoxy glycosides, α-l-oleandrose and N,N-dimethyl-β-l-pyrrolosamine. The two halves of lomaiviticin A are linked by a single carbon-carbon bond oriented syn with respect to the oleandrose residues. While many advances toward the synthesis of lomaiviticin A have been reported, including synthesis of the aglycon, a route to the bis(cyclohexenone) core bearing any of the carbohydrate residues has not been disclosed. Here we describe a short route to a core structure of lomaiviticin A bearing two α-l-oleandrose residues. The synthetic route features a Stille coupling to form the conjoining carbon-carbon bond of the target and a double reductive transposition to establish the correct stereochemistry at this bond. Two synthetic routes were developed to elaborate the reductive transposition product to the bis(cyclohexenone) target. The more efficient pathway features an interrupted Barton vinyl iodide synthesis followed by oxidative elimination of iodide to efficiently establish the enone functionalities in the target. The bis(cyclohexenone) product may find use in a synthesis of lomaiviticin A itself.
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Affiliation(s)
- John A Rose
- Department of Chemistry, Yale University New Haven Connecticut 06520 USA
| | - Subham Mahapatra
- Department of Chemistry, Yale University New Haven Connecticut 06520 USA
| | - Xin Li
- Department of Chemistry, Yale University New Haven Connecticut 06520 USA
| | - Chao Wang
- Department of Chemistry, Yale University New Haven Connecticut 06520 USA
| | - Lei Chen
- Department of Chemistry, Yale University New Haven Connecticut 06520 USA
| | - Steven M Swick
- Department of Chemistry, Yale University New Haven Connecticut 06520 USA
| | - Seth B Herzon
- Department of Chemistry, Yale University New Haven Connecticut 06520 USA .,Department of Pharmacology, Yale School of Medicine New Haven Connecticut 06520 USA
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10
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Liu Y, Wang J, Wei Z, Cao J, Liang D, Lin Y, Duan H. Direct enantio- and diastereoselective Mannich reactions of isatin-derived ketimines with oxo-indanecarboxylates catalyzed by chiral thiourea derived from hydroquinidine. Org Biomol Chem 2018; 16:8927-8932. [PMID: 30431642 DOI: 10.1039/c8ob02595a] [Citation(s) in RCA: 6] [Impact Index Per Article: 1.0] [Reference Citation Analysis] [Abstract] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Indexed: 12/12/2022]
Abstract
A highly diastereo- and enantioselective Mannich reaction of isatin-derived ketimines with oxo-indanecarboxylates catalyzed by chiral thiourea derived from hydroquinidine has been developed. A series of 3-substituted 3-amino-oxindoles containing assembled bicyclic rings linked by a C-C bond were constructed by this protocol in excellent yields (92-99%) with high enantioselectivities (85-99% ee) and diastereoselectivities (up to >99 : 1 dr).
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Affiliation(s)
- Yuxin Liu
- Department of Organic Chemistry, College of Chemistry, Jilin University, 2699 Qianjin Street, Changchun 130012, China.
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11
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Waldman AJ, Balskus EP. Discovery of a Diazo-Forming Enzyme in Cremeomycin Biosynthesis. J Org Chem 2018; 83:7539-7546. [PMID: 29771512 DOI: 10.1021/acs.joc.8b00367] [Citation(s) in RCA: 43] [Impact Index Per Article: 7.2] [Reference Citation Analysis] [Abstract] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Indexed: 02/08/2023]
Abstract
The molecular architectures and potent bioactivities of diazo-containing natural products have attracted the interest of synthetic and biological chemists. Despite this attention, the biosynthetic enzymes involved in diazo group construction have not been identified. Here, we show that the ATP-dependent enzyme CreM installs the diazo group in cremeomycin via late-stage N-N bond formation using nitrite. This finding should inspire efforts to use diazo-forming enzymes in biocatalysis and synthetic biology as well as enable genome-based discovery of new diazo-containing metabolites.
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Affiliation(s)
- Abraham J Waldman
- Department of Chemistry and Chemical Biology , Harvard University , 12 Oxford St , Cambridge , Massachusetts 02138 , United States
| | - Emily P Balskus
- Department of Chemistry and Chemical Biology , Harvard University , 12 Oxford St , Cambridge , Massachusetts 02138 , United States
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12
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Kim E, Park S, Chang S. Silylative Reductive Amination of α,β-Unsaturated Aldehydes: A Convenient Synthetic Route to β-Silylated Secondary Amines. Chemistry 2018; 24:5765-5769. [DOI: 10.1002/chem.201800958] [Citation(s) in RCA: 18] [Impact Index Per Article: 3.0] [Reference Citation Analysis] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Received: 02/25/2018] [Indexed: 12/23/2022]
Affiliation(s)
- Eunae Kim
- Department of Chemistry; Korea Advanced Institute of Science and Technology (KAIST); Daejeon 34141 Republic of Korea
- Center for Catalytic Hydrocarbon Functionalizations; Institute for Basic Science (IBS); Daejeon 34141 Republic of Korea
- Korea Research Institute of Chemical Technology (KRICT); Daejeon 34114 Republic of Korea
| | - Sehoon Park
- Department of Chemistry; Korea Advanced Institute of Science and Technology (KAIST); Daejeon 34141 Republic of Korea
- Center for Catalytic Hydrocarbon Functionalizations; Institute for Basic Science (IBS); Daejeon 34141 Republic of Korea
| | - Sukbok Chang
- Department of Chemistry; Korea Advanced Institute of Science and Technology (KAIST); Daejeon 34141 Republic of Korea
- Center for Catalytic Hydrocarbon Functionalizations; Institute for Basic Science (IBS); Daejeon 34141 Republic of Korea
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13
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Robinson EE, Thomson RJ. A Strategy for the Convergent and Stereoselective Assembly of Polycyclic Molecules. J Am Chem Soc 2018; 140:1956-1965. [PMID: 29309727 DOI: 10.1021/jacs.7b13234] [Citation(s) in RCA: 49] [Impact Index Per Article: 8.2] [Reference Citation Analysis] [Abstract] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Indexed: 01/21/2023]
Abstract
The stereoselective oxidative coupling of cyclic ketones via silyl bis-enol ethers followed by ring-closing metathesis is shown to be a general and powerful reaction sequence for the preparation of diverse polycyclic scaffolds from simple precursors. The modular strategy successfully constructs substructures prevalent in numerous bioactive natural product families, varying in substitution and carbocyclic composition. Several of the prepared compounds were shown to possess potent cytotoxic activity against a panel of tumor cell lines. The utility of this strategy was further demonstrated by a concise and highly convergent 17-step formal synthesis of the complex antimalarial marine diterpene, (+)-7,20-diisocyanoadociane.
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Affiliation(s)
- Emily E Robinson
- Department of Chemistry, Northwestern University , 2145 Sheridan Road, Evanston, Illinois 60208, United States
| | - Regan J Thomson
- Department of Chemistry, Northwestern University , 2145 Sheridan Road, Evanston, Illinois 60208, United States
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14
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Abstract
(-)-Lomaiviticin A (4) is a complex C2-symmetric bacterial metabolite that contains two diazofluorene functional groups. The diazofluorene consists of naphthoquinone, cyclopentadiene, and diazo substituents fused through a σ- and π-bonding network. Additionally, (-)-lomaiviticin A (4) is a potent cytotoxin, with half-maximal inhibitory potency (IC50) values in the low nanomolar range against many cancer cell lines. Because of limitations in supply, its mechanism of action had remained a "black box" since its isolation in the early 2000s. In this Account, I describe how studies directed toward the total synthesis of (-)-lomaiviticin A (4) provided a platform to elucidate the emergent properties of this metabolite and thereby connect chemical reactivity with cellular phenotype. We first developed a convergent strategy to prepare the diazofluorene (9 + 10 → 13). We then adapted this chemistry to the synthesis of lomaiviticin aglycon (21/22) and the natural monomeric diazofluorene (-)-kinamycin F (3). The key step in the lomaiviticin aglycon (21/22) synthesis involved the stereoselective oxidative coupling of two monomeric diazofluorenes (2 × 18 → 20) to establish the cojoining carbon-carbon bond of the target. As the absolute stereochemistry of the aglycon and carbohydrate residues of (-)-lomaiviticin A (4) were unknown, we developed a semisynthetic route to the metabolite that proceeds in one step and 42% yield by diazo transfer to the more abundant isolate (-)-lomaiviticin C (6). This allowed us to complete the stereochemical assignment of (-)-lomaiviticin A (4) and provided a renewable source of material. Using this material, we established that the remarkable cytotoxic effects of (-)-lomaiviticin A (4) derive from the induction of highly toxic double-strand breaks (DSBs) in DNA. At the molecular level, 1,7-nucleophilic additions to each electrophilic diazofluorene trigger homolytic decomposition pathways that produce sp2 radicals at the carbon atoms of each diazo group. These radicals abstract hydrogen atoms from the deoxyribose of DNA, a process known to initiate strand cleavage. NMR spectroscopy and molecular mechanics simulations were used to elucidate the mode of DNA binding. These studies showed that both diazofluorenes of (-)-lomaiviticin A (4) penetrate into the duplex. This mode of non-covalent binding places each diazo carbon atom in close proximity to each DNA strand. Throughout these studies, isolates containing one diazofluorene, such as (-)-lomaiviticin C (6) and (-)-kinamycin C (2), were used as controls. Consistent with our mechanistic model, these compounds do not induce DSBs in DNA and are several orders of magnitude less potent. Reactivity studies suggest that (-)-lomaiviticin A (4) is more electrophilic than simple monomeric diazofluorenes. We attribute this to through-space delocalization of the developing negative charge in the transition state for 1,7-addition. Consistent with this mechanism of action, (-)-lomaiviticin A (4) displays selective low-picomolar potencies toward DNA DSB repair-deficient cell types. The emergent properties of (-)-lomaiviticin A (4) derive from the specific arrangement of diazo, naphthoquinone, cyclopentadiene, and ketone functional groups. These functional groups work together to yield, essentially, a masked vinyl radical that can be exposed under biological conditions. Furthermore, the rotational symmetry of the metabolite, deriving from dimerization, allows it to interact with the antiparallel symmetry of DNA and affect cleavage of the duplex.
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Affiliation(s)
- Seth B. Herzon
- Department of Chemistry, Yale University, New Haven, Connecticut 06520, United States. Department of Pharmacology, Yale School of Medicine, New Haven, Connecticut 06520, United States
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15
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Liu J, Krajangsri S, Singh T, De Seriis G, Chumnanvej N, Wu H, Andersson PG. Regioselective Iridium-Catalyzed Asymmetric Monohydrogenation of 1,4-Dienes. J Am Chem Soc 2017; 139:14470-14475. [DOI: 10.1021/jacs.7b06829] [Citation(s) in RCA: 26] [Impact Index Per Article: 3.7] [Reference Citation Analysis] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Indexed: 12/20/2022]
Affiliation(s)
- Jianguo Liu
- Department of Organic Chemistry, Stockholm University, Arrhenius-laboratory, 10691, Stockholm, Sweden
| | - Suppachai Krajangsri
- Department of Organic Chemistry, Stockholm University, Arrhenius-laboratory, 10691, Stockholm, Sweden
| | - Thishana Singh
- Department of Organic Chemistry, Stockholm University, Arrhenius-laboratory, 10691, Stockholm, Sweden
| | - Giulia De Seriis
- Department of Organic Chemistry, Stockholm University, Arrhenius-laboratory, 10691, Stockholm, Sweden
| | - Napasawan Chumnanvej
- Department of Organic Chemistry, Stockholm University, Arrhenius-laboratory, 10691, Stockholm, Sweden
| | - Haibo Wu
- Department of Organic Chemistry, Stockholm University, Arrhenius-laboratory, 10691, Stockholm, Sweden
| | - Pher G. Andersson
- Department of Organic Chemistry, Stockholm University, Arrhenius-laboratory, 10691, Stockholm, Sweden
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16
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Isolation, structure elucidation and biosynthesis of benzo[b]fluorene nenestatin A from deep-sea derived Micromonospora echinospora SCSIO 04089. Tetrahedron 2017. [DOI: 10.1016/j.tet.2017.03.054] [Citation(s) in RCA: 28] [Impact Index Per Article: 4.0] [Reference Citation Analysis] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Indexed: 11/18/2022]
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17
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Zweig JE, Kim DE, Newhouse TR. Methods Utilizing First-Row Transition Metals in Natural Product Total Synthesis. Chem Rev 2017; 117:11680-11752. [PMID: 28525261 DOI: 10.1021/acs.chemrev.6b00833] [Citation(s) in RCA: 139] [Impact Index Per Article: 19.9] [Reference Citation Analysis] [Abstract] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Indexed: 01/30/2023]
Abstract
First-row transition-metal-mediated reactions constitute an important and growing area of research due to the low cost, low toxicity, and exceptional synthetic versatility of these metals. Currently, there is considerable effort to replace existing precious-metal-catalyzed reactions with first-row analogs. More importantly, there are a plethora of unique transformations mediated by first-row metals, which have no classical second- or third-row counterpart. Herein, the application of first-row metal-mediated methods to the total synthesis of natural products is discussed. This Review is intended to highlight strategic uses of these metals to realize efficient syntheses and highlight the future potential of these reagents and catalysts in organic synthesis.
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Affiliation(s)
- Joshua E Zweig
- Department of Chemistry, Yale University , 275 Prospect Street, New Haven, Connecticut 06520-8107, United States
| | - Daria E Kim
- Department of Chemistry, Yale University , 275 Prospect Street, New Haven, Connecticut 06520-8107, United States
| | - Timothy R Newhouse
- Department of Chemistry, Yale University , 275 Prospect Street, New Haven, Connecticut 06520-8107, United States
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18
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Waldman AJ, Ng TL, Wang P, Balskus EP. Heteroatom-Heteroatom Bond Formation in Natural Product Biosynthesis. Chem Rev 2017; 117:5784-5863. [PMID: 28375000 PMCID: PMC5534343 DOI: 10.1021/acs.chemrev.6b00621] [Citation(s) in RCA: 100] [Impact Index Per Article: 14.3] [Reference Citation Analysis] [Abstract] [MESH Headings] [Grants] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Indexed: 02/08/2023]
Abstract
Natural products that contain functional groups with heteroatom-heteroatom linkages (X-X, where X = N, O, S, and P) are a small yet intriguing group of metabolites. The reactivity and diversity of these structural motifs has captured the interest of synthetic and biological chemists alike. Functional groups containing X-X bonds are found in all major classes of natural products and often impart significant biological activity. This review presents our current understanding of the biosynthetic logic and enzymatic chemistry involved in the construction of X-X bond containing functional groups within natural products. Elucidating and characterizing biosynthetic pathways that generate X-X bonds could both provide tools for biocatalysis and synthetic biology, as well as guide efforts to uncover new natural products containing these structural features.
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Affiliation(s)
- Abraham J. Waldman
- Department of Chemistry and Chemical Biology, Harvard University, Cambridge, MA 02138, United States
| | - Tai L. Ng
- Department of Chemistry and Chemical Biology, Harvard University, Cambridge, MA 02138, United States
| | - Peng Wang
- Department of Chemistry and Chemical Biology, Harvard University, Cambridge, MA 02138, United States
| | - Emily P. Balskus
- Department of Chemistry and Chemical Biology, Harvard University, Cambridge, MA 02138, United States
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19
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Abstract
Diazo groups have broad and tunable reactivity. That and other attributes endow diazo compounds with the potential to be valuable reagents for chemical biologists. The presence of diazo groups in natural products underscores their metabolic stability and anticipates their utility in a biological context. The chemoselectivity of diazo groups, even in the presence of azido groups, presents many opportunities. Already, diazo compounds have served as chemical probes and elicited novel modifications of proteins and nucleic acids. Here, we review advances that have facilitated the chemical synthesis of diazo compounds, and we highlight applications of diazo compounds in the detection and modification of biomolecules.
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Affiliation(s)
- Kalie A. Mix
- Department of Biochemistry, University of Wisconsin–Madison, 433 Babcock Drive, Madison, Wisconsin 53706, United States
| | - Matthew R. Aronoff
- Department of Chemistry, University of Wisconsin–Madison, 1101 University Avenue, Madison, Wisconsin 53706, United States
| | - Ronald T. Raines
- Department of Biochemistry, University of Wisconsin–Madison, 433 Babcock Drive, Madison, Wisconsin 53706, United States
- Department of Chemistry, University of Wisconsin–Madison, 1101 University Avenue, Madison, Wisconsin 53706, United States
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20
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21
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22
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Shi Y, Gao S. Recent advances of synthesis of fluorenone and fluorene containing natural products. Tetrahedron 2016. [DOI: 10.1016/j.tet.2016.02.022] [Citation(s) in RCA: 54] [Impact Index Per Article: 6.8] [Reference Citation Analysis] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Indexed: 12/21/2022]
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23
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Horn EJ, Silverston JS, Vanderwal CD. A Failed Late-Stage Epimerization Thwarts an Approach to Ineleganolide. J Org Chem 2016; 81:1819-38. [PMID: 26863401 DOI: 10.1021/acs.joc.5b02550] [Citation(s) in RCA: 24] [Impact Index Per Article: 3.0] [Reference Citation Analysis] [Abstract] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Indexed: 11/29/2022]
Abstract
Significant efforts were made to complete a synthesis of the complex norcembranoid ineleganolide via a seemingly attractive strategy involving late-stage creation of the central seven-membered ring. While the two key enantioenriched building blocks were made via high-yielding sequences and their convergent union was efficient, the critical C4-C5 bond of this sterically congested natural product could never be forged. Several interesting examples of unexpected acid-base behavior and unanticipated proximity-induced reactivity accounted for most of the problems in the execution of the synthesis plan.
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Affiliation(s)
- Evan J Horn
- Department of Chemistry, University of California , 1102 Natural Sciences II, Irvine, California 92697-2025, United States
| | - Joel S Silverston
- Department of Chemistry, University of California , 1102 Natural Sciences II, Irvine, California 92697-2025, United States
| | - Christopher D Vanderwal
- Department of Chemistry, University of California , 1102 Natural Sciences II, Irvine, California 92697-2025, United States
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24
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Cai S, Xiao Z, Ou J, Shi Y, Gao S. A photo-induced C–C bond formation methodology to construct tetrahydrofluorenones and their related structures. Org Chem Front 2016. [DOI: 10.1039/c5qo00392j] [Citation(s) in RCA: 13] [Impact Index Per Article: 1.6] [Reference Citation Analysis] [Abstract] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Indexed: 11/21/2022]
Abstract
A metal-free, photo-induced C–C bond formation methodology was developed to construct tetrahydrofluorenones and their related structures.
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Affiliation(s)
- Shujun Cai
- Shanghai Key Laboratory of Green Chemistry and Chemical Processes
- School of Chemistry and Molecular Engineering
- East China Normal University
- Shanghai 200062
- China
| | - Zheming Xiao
- Shanghai Key Laboratory of Green Chemistry and Chemical Processes
- School of Chemistry and Molecular Engineering
- East China Normal University
- Shanghai 200062
- China
| | - Jinjie Ou
- Shanghai Key Laboratory of Green Chemistry and Chemical Processes
- School of Chemistry and Molecular Engineering
- East China Normal University
- Shanghai 200062
- China
| | - Yingbo Shi
- Shanghai Key Laboratory of Green Chemistry and Chemical Processes
- School of Chemistry and Molecular Engineering
- East China Normal University
- Shanghai 200062
- China
| | - Shuanhu Gao
- Shanghai Key Laboratory of Green Chemistry and Chemical Processes
- School of Chemistry and Molecular Engineering
- East China Normal University
- Shanghai 200062
- China
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25
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Yang C, Huang C, Zhang W, Zhu Y, Zhang C. Heterologous Expression of Fluostatin Gene Cluster Leads to a Bioactive Heterodimer. Org Lett 2015; 17:5324-7. [PMID: 26465097 DOI: 10.1021/acs.orglett.5b02683] [Citation(s) in RCA: 65] [Impact Index Per Article: 7.2] [Reference Citation Analysis] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Indexed: 11/28/2022]
Affiliation(s)
- Chunfang Yang
- Key
Laboratory of Tropical Marine Bio-resources and Ecology, Guangdong
Key Laboratory of Marine Materia Medica, RNAM Center for Marine Microbiology,
South China Sea Institute of Oceanology, Chinese Academy of Sciences, 164 West Xingang Road, Guangzhou 510301, China
- University of Chinese Academy of Sciences, 19 Yuquan Road, Beijing 100049, China
| | - Chunshuai Huang
- Key
Laboratory of Tropical Marine Bio-resources and Ecology, Guangdong
Key Laboratory of Marine Materia Medica, RNAM Center for Marine Microbiology,
South China Sea Institute of Oceanology, Chinese Academy of Sciences, 164 West Xingang Road, Guangzhou 510301, China
- University of Chinese Academy of Sciences, 19 Yuquan Road, Beijing 100049, China
| | - Wenjun Zhang
- Key
Laboratory of Tropical Marine Bio-resources and Ecology, Guangdong
Key Laboratory of Marine Materia Medica, RNAM Center for Marine Microbiology,
South China Sea Institute of Oceanology, Chinese Academy of Sciences, 164 West Xingang Road, Guangzhou 510301, China
| | - Yiguang Zhu
- Key
Laboratory of Tropical Marine Bio-resources and Ecology, Guangdong
Key Laboratory of Marine Materia Medica, RNAM Center for Marine Microbiology,
South China Sea Institute of Oceanology, Chinese Academy of Sciences, 164 West Xingang Road, Guangzhou 510301, China
| | - Changsheng Zhang
- Key
Laboratory of Tropical Marine Bio-resources and Ecology, Guangdong
Key Laboratory of Marine Materia Medica, RNAM Center for Marine Microbiology,
South China Sea Institute of Oceanology, Chinese Academy of Sciences, 164 West Xingang Road, Guangzhou 510301, China
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26
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Multigram synthesis of 1- O -acetyl-3- O -(4-methoxybenzyl)-4- N -(9-fluorenylmethoxycarbonyl)-4- N -methyl- l -pyrrolosamine. Tetrahedron Lett 2015; 56:3231-3234. [DOI: 10.1016/j.tetlet.2014.12.073] [Citation(s) in RCA: 1] [Impact Index Per Article: 0.1] [Reference Citation Analysis] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Indexed: 11/20/2022]
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27
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Jensen PR, Moore BS, Fenical W. The marine actinomycete genus Salinispora: a model organism for secondary metabolite discovery. Nat Prod Rep 2015; 32:738-51. [PMID: 25730728 PMCID: PMC4414829 DOI: 10.1039/c4np00167b] [Citation(s) in RCA: 128] [Impact Index Per Article: 14.2] [Reference Citation Analysis] [Abstract] [MESH Headings] [Grants] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Indexed: 12/30/2022]
Abstract
This review covers the initial discovery of the marine actinomycete genus Salinispora through its development as a model for natural product research. A focus is placed on the novel chemical structures reported with reference to their biological activities and the synthetic and biosynthetic studies they have inspired. The time line of discoveries progresses from more traditional bioassay-guided approaches through the application of genome mining and genetic engineering techniques that target the products of specific biosynthetic gene clusters. This overview exemplifies the extraordinary biosynthetic diversity that can emanate from a narrowly defined genus and supports future efforts to explore marine taxa in the search for novel natural products.
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Affiliation(s)
- Paul R Jensen
- Center for Marine Biotechnology and Biomedicine, Scripps Institution of Oceanography, University of California, San Diego, USA.
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28
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Schmidt EY, Tatarinova IV, Trofimov BA. C-vinylation of enolates with acetylenes in a one-pot synthesis of 4,5-dihydro-1H-pyrazole-1-carbothioamides. RUSSIAN JOURNAL OF ORGANIC CHEMISTRY 2015. [DOI: 10.1134/s1070428015010273] [Citation(s) in RCA: 2] [Impact Index Per Article: 0.2] [Reference Citation Analysis] [Track Full Text] [Subscribe] [Scholar Register] [Indexed: 11/23/2022]
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29
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Zhang Z, Hashiguchi T, Ishida T, Hamasaki A, Honma T, Ohashi H, Yokoyama T, Tokunaga M. Aerobic oxidation of cyclohexanones to phenols and aryl ethers over supported Pd catalysts. Org Chem Front 2015. [DOI: 10.1039/c4qo00354c] [Citation(s) in RCA: 21] [Impact Index Per Article: 2.3] [Reference Citation Analysis] [Abstract] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Indexed: 12/19/2022]
Abstract
ZrO2 supported palladium catalysts promoted the aerobic oxidation of cyclohexanones to give phenols and aryl ethers.
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Affiliation(s)
- Zhenzhong Zhang
- Department of Chemistry
- Graduate School of Sciences
- Kyushu University
- Fukuoka 812-8581
- Japan
| | - Taishin Hashiguchi
- Department of Chemistry
- Graduate School of Sciences
- Kyushu University
- Fukuoka 812-8581
- Japan
| | - Tamao Ishida
- Research Center for Gold Chemistry
- Graduate School of Urban Environmental Sciences
- Tokyo Metropolitan University
- Tokyo 192-0397
- Japan
| | - Akiyuki Hamasaki
- Department of Chemistry
- Graduate School of Sciences
- Kyushu University
- Fukuoka 812-8581
- Japan
| | - Tetsuo Honma
- Japan Synchrotron Radiation Research Institute (JASRI/SPring-8)
- Hyogo 679-5198
- Japan
| | - Hironori Ohashi
- Faculty of Arts and Science
- Kyushu University
- Fukuoka 819-0395
- Japan
| | - Takushi Yokoyama
- Department of Chemistry
- Graduate School of Sciences
- Kyushu University
- Fukuoka 812-8581
- Japan
| | - Makoto Tokunaga
- Department of Chemistry
- Graduate School of Sciences
- Kyushu University
- Fukuoka 812-8581
- Japan
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30
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Woo CM, Ranjan N, Arya DP, Herzon SB. Analysis of diazofluorene DNA binding and damaging activity: DNA cleavage by a synthetic monomeric diazofluorene. Angew Chem Int Ed Engl 2014; 53:9325-8. [PMID: 25044348 PMCID: PMC4206835 DOI: 10.1002/anie.201404137] [Citation(s) in RCA: 20] [Impact Index Per Article: 2.0] [Reference Citation Analysis] [Abstract] [Key Words] [MESH Headings] [Grants] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Received: 04/09/2014] [Indexed: 01/04/2023]
Abstract
The lomaiviticins and kinamycins are complex DNA damaging natural products that contain a diazofluorene functional group. Herein, we elucidate the influence of skeleton structure, ring and chain isomerization, D-ring oxidation state, and naphthoquinone substitution on DNA binding and damaging activity. We show that the electrophilicity of the diazofluorene appears to be a significant determinant of DNA damaging activity. These studies identify the monomeric diazofluorene 11 as a potent DNA cleavage agent in tissue culture. The simpler structure of 11 relative to the natural products establishes it as a useful lead for translational studies.
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Affiliation(s)
- Christina M. Woo
- Department of Chemistry, Yale University, 225 Prospect Street, New Haven, CT 06520-8107 (USA)
| | - Nihar Ranjan
- Department of Chemistry, Clemson University, Clemson, SC 29634 (USA)
| | - Dev P. Arya
- Department of Chemistry, Clemson University, Clemson, SC 29634 (USA)
| | - Seth B. Herzon
- Department of Chemistry, Yale University, 225 Prospect Street, New Haven, CT 06520-8107 (USA)
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31
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Trofimov BA, Schmidt EY. Reactions of acetylenes in superbasic media. Recent advances. RUSSIAN CHEMICAL REVIEWS 2014. [DOI: 10.1070/rc2014v083n07abeh004425] [Citation(s) in RCA: 37] [Impact Index Per Article: 3.7] [Reference Citation Analysis] [Track Full Text] [Subscribe] [Scholar Register] [Indexed: 11/08/2022]
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32
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Sherwood T, Trotta AH, Snyder SA. A strategy for complex dimer formation when biomimicry fails: total synthesis of ten coccinellid alkaloids. J Am Chem Soc 2014; 136:9743-53. [PMID: 24959981 PMCID: PMC4105056 DOI: 10.1021/ja5045852] [Citation(s) in RCA: 28] [Impact Index Per Article: 2.8] [Reference Citation Analysis] [Abstract] [MESH Headings] [Grants] [Track Full Text] [Download PDF] [Figures] [Journal Information] [Subscribe] [Scholar Register] [Received: 05/07/2014] [Indexed: 11/29/2022]
Abstract
Although dimeric natural products can often be synthesized in the laboratory by directly merging advanced monomers, these approaches sometimes fail, leading instead to non-natural architectures via incorrect unions. Such a situation arose during our studies of the coccinellid alkaloids, when attempts to directly dimerize Nature's presumed monomeric precursors in a putative biomimetic sequence afforded only a non-natural analogue through improper regiocontrol. Herein, we outline a unique strategy for dimer formation that obviates these difficulties, one which rapidly constructs the coccinellid dimers psylloborine A and isopsylloborine A through a terminating sequence of two reaction cascades that generate five bonds, five rings, and four stereocenters. In addition, a common synthetic intermediate is identified which allows for the rapid, asymmetric formal or complete total syntheses of eight monomeric members of the class.
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Affiliation(s)
- Trevor
C. Sherwood
- Department
of Chemistry, Columbia University, 3000 Broadway, New York, New York 10027, United States
| | - Adam H. Trotta
- Department
of Chemistry, Columbia University, 3000 Broadway, New York, New York 10027, United States
| | - Scott A. Snyder
- Department
of Chemistry, Columbia University, 3000 Broadway, New York, New York 10027, United States
- Department
of Chemistry, The Scripps Research Institute, 130 Scripps Way, Jupiter, Florida 33458, United States
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33
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Woo CM, Ranjan N, Arya DP, Herzon SB. Analysis of Diazofluorene DNA Binding and Damaging Activity: DNA Cleavage by a Synthetic Monomeric Diazofluorene. Angew Chem Int Ed Engl 2014. [DOI: 10.1002/ange.201404137] [Citation(s) in RCA: 7] [Impact Index Per Article: 0.7] [Reference Citation Analysis] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Indexed: 11/09/2022]
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34
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Janso JE, Haltli BA, Eustáquio AS, Kulowski K, Waldman AJ, Zha L, Nakamura H, Bernan VS, He H, Carter GT, Koehn FE, Balskus EP. Discovery of the lomaiviticin biosynthetic gene cluster in Salinispora pacifica.. Tetrahedron 2014; 70:4156-4164. [PMID: 25045187 PMCID: PMC4101813 DOI: 10.1016/j.tet.2014.03.009] [Citation(s) in RCA: 42] [Impact Index Per Article: 4.2] [Reference Citation Analysis] [Abstract] [Key Words] [Grants] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Indexed: 12/22/2022]
Abstract
The lomaiviticins are a family of cytotoxic marine natural products that have captured the attention of both synthetic and biological chemists due to their intricate molecular scaffolds and potent biological activities. Here we describe the identification of the gene cluster responsible for lomaiviticin biosynthesis in Salinispora pacifica strains DPJ-0016 and DPJ-0019 using a combination of molecular approaches and genome sequencing. The link between the lom gene cluster and lomaiviticin production was confirmed using bacterial genetics, and subsequent analysis and annotation of this cluster revealed the biosynthetic basis for the core polyketide scaffold. Additionally, we have used comparative genomics to identify candidate enzymes for several unusual tailoring events, including diazo formation and oxidative dimerization. These findings will allow further elucidation of the biosynthetic logic of lomaiviticin assembly and provide useful molecular tools for application in biocatalysis and synthetic biology.
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Affiliation(s)
- Jeffrey E. Janso
- Natural Products, Worldwide Medicinal Chemistry, Pfizer Worldwide Research and Development, Groton, CT 06355, United States
| | - Brad A. Haltli
- Natural Products, Worldwide Medicinal Chemistry, Pfizer Worldwide Research and Development, Groton, CT 06355, United States
| | - Alessandra S. Eustáquio
- Natural Products, Worldwide Medicinal Chemistry, Pfizer Worldwide Research and Development, Groton, CT 06355, United States
| | - Kerry Kulowski
- Natural Products, Worldwide Medicinal Chemistry, Pfizer Worldwide Research and Development, Groton, CT 06355, United States
| | - Abraham J. Waldman
- Department of Chemistry and Chemical Biology, Harvard University, Cambridge, MA 02138, United States
| | - Li Zha
- Department of Chemistry and Chemical Biology, Harvard University, Cambridge, MA 02138, United States
| | - Hitomi Nakamura
- Department of Chemistry and Chemical Biology, Harvard University, Cambridge, MA 02138, United States
| | - Valerie S. Bernan
- Natural Products, Worldwide Medicinal Chemistry, Pfizer Worldwide Research and Development, Groton, CT 06355, United States
| | - Haiyin He
- Natural Products, Worldwide Medicinal Chemistry, Pfizer Worldwide Research and Development, Groton, CT 06355, United States
| | - Guy T. Carter
- Natural Products, Worldwide Medicinal Chemistry, Pfizer Worldwide Research and Development, Groton, CT 06355, United States
| | - Frank E. Koehn
- Natural Products, Worldwide Medicinal Chemistry, Pfizer Worldwide Research and Development, Groton, CT 06355, United States
| | - Emily P. Balskus
- Department of Chemistry and Chemical Biology, Harvard University, Cambridge, MA 02138, United States
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35
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Wender PA, Donnelly AC, Loy BA, Near KE, Staveness D. Rethinking the Role of Natural Products: Function-Oriented Synthesis, Bryostatin, and Bryologs. METHODS AND PRINCIPLES IN MEDICINAL CHEMISTRY 2014. [DOI: 10.1002/9783527676545.ch14] [Citation(s) in RCA: 9] [Impact Index Per Article: 0.9] [Reference Citation Analysis] [Track Full Text] [Subscribe] [Scholar Register] [Indexed: 12/03/2022]
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36
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Abstract
Abstract
The synthesis of urea in 1828 set in motion the discipline of organic synthesis in general and of total synthesis in particular, the art and science of synthesizing natural products, the molecules of living nature. Early endeavors in total synthesis had as their main objective the proof of structure of the target molecule. Later on, the primary goal became the demonstration of the power of synthesis to construct complex molecules through appropriately devised strategies, making the endeavor an achievement whose value was measured by its elegance and efficiency. While these objectives continue to be important, contemporary endeavors in total synthesis are increasingly focused on practical aspects, including method development, efficiency, and biological and medical relevance. In this article, the emergence and evolution of total synthesis to its present state is traced, selected total syntheses from the author's laboratories are highlighted, and projections for the future of the field are discussed.
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37
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Moebius DC, Rendina VL, Kingsbury JS. Catalysis of diazoalkane-carbonyl homologation. How new developments in hydrazone oxidation enable the carbon insertion strategy for synthesis. Top Curr Chem (Cham) 2014; 346:111-62. [PMID: 24770564 DOI: 10.1007/128_2013_521] [Citation(s) in RCA: 25] [Impact Index Per Article: 2.5] [Reference Citation Analysis] [Abstract] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Indexed: 12/17/2022]
Abstract
Diazo compounds continue both to challenge and to fascinate practitioners of chemical synthesis. The most strategically powerful and unique type of reactivity observed with these reagents is a formal insertion of the donor-acceptor carbon into C-C or C-H bonds alpha to carbonyl groups. Although the reaction does not involve discrete carbon-metal bonds, it can be catalyzed by metal-based Lewis acids. This chapter investigates both classical and modern developments in diazoalkyl carbon insertion with a special emphasis on nonstabilized nucleophiles.
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Affiliation(s)
- David C Moebius
- Onyx Pharmaceuticals, Inc., 249 E. Grand Avenue, South San Francisco, CA, 94080, USA
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38
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Abbott GL, Wu X, Zhao Z, Guo L, Birman VB, Hasinoff BB, Dmitrienko GI. Prekinamycin and an isosteric-isoelectronic analogue exhibit comparable cytotoxicity towards K562 human leukemia cells. MEDCHEMCOMM 2014. [DOI: 10.1039/c4md00197d] [Citation(s) in RCA: 7] [Impact Index Per Article: 0.7] [Reference Citation Analysis] [Abstract] [Track Full Text] [Subscribe] [Scholar Register] [Indexed: 11/21/2022]
Abstract
The diazo functionality of the kinamycins may not be an absolute requirement for bioactivity.
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Affiliation(s)
- Glenn L. Abbott
- Department of Chemistry
- University of Waterloo
- Waterloo, Canada
| | - Xing Wu
- Faculty of Pharmacy
- Apotex Centre
- University of Manitoba
- Winnipeg, Canada
| | - Zhufeng Zhao
- Department of Chemistry
- Washington University
- St Louis, USA
| | - Lei Guo
- Department of Chemistry
- Washington University
- St Louis, USA
| | | | - Brian B. Hasinoff
- Faculty of Pharmacy
- Apotex Centre
- University of Manitoba
- Winnipeg, Canada
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39
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One-pot synthesis of 3-(E)-styrylpyrroles from (E)-styrylmethyl ketoximes and acetylene. MENDELEEV COMMUNICATIONS 2013. [DOI: 10.1016/j.mencom.2013.11.012] [Citation(s) in RCA: 9] [Impact Index Per Article: 0.8] [Reference Citation Analysis] [Track Full Text] [Subscribe] [Scholar Register] [Indexed: 11/18/2022]
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40
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Ouzouni MD, Fokas D. Synthetic Studies of Kinamycin Antibiotics: Stereoselective Synthesis of the Highly Oxygenated D-Ring and Construction of the ABD-Ring System of Kinamycins. European J Org Chem 2013. [DOI: 10.1002/ejoc.201300858] [Citation(s) in RCA: 5] [Impact Index Per Article: 0.5] [Reference Citation Analysis] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Indexed: 11/11/2022]
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41
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Lee AS, Shair MD. Synthesis of the C4-Epi-Lomaiviticin B Core Reveals Subtle Stereoelectronic Effects. Org Lett 2013; 15:2390-3. [DOI: 10.1021/ol400832r] [Citation(s) in RCA: 17] [Impact Index Per Article: 1.5] [Reference Citation Analysis] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Indexed: 02/07/2023]
Affiliation(s)
- Amy S. Lee
- Department of Chemistry and Chemical Biology, Harvard University, 12 Oxford Street, Cambridge, Massachusetts 02138, United States
| | - Matthew D. Shair
- Department of Chemistry and Chemical Biology, Harvard University, 12 Oxford Street, Cambridge, Massachusetts 02138, United States
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42
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Feldman KS, Selfridge BR. Synthesis studies on the lomaiviticin A aglycone core: development of a divergent, two-directional strategy. J Org Chem 2013; 78:4499-511. [PMID: 23581811 DOI: 10.1021/jo4005074] [Citation(s) in RCA: 13] [Impact Index Per Article: 1.2] [Reference Citation Analysis] [Abstract] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Indexed: 11/28/2022]
Abstract
The enantiomer of the bicyclic lomaiviticin aglycone A core was prepared via a two-directional, divergent approach featuring (1) a double Ireland Claisen rearrangement to establish key core bonds with correct relative stereochemistry and (2) a double olefin metathesis reaction to deliver both cyclohexene rings of the target.
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Affiliation(s)
- Ken S Feldman
- Department of Chemistry, The Pennsylvania State University, University Park, Pennsylvania 16802, United States.
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43
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Feldman KS, Selfridge BR. Enantioselective Synthesis of the ent-Lomaiviticin A Bicyclic Core. Org Lett 2012; 14:5484-7. [DOI: 10.1021/ol302567f] [Citation(s) in RCA: 13] [Impact Index Per Article: 1.1] [Reference Citation Analysis] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Indexed: 11/30/2022]
Affiliation(s)
- Ken S. Feldman
- Chemistry Department, The Pennsylvania State University, University Park, Pennsylvania 16802, United States
| | - Brandon R. Selfridge
- Chemistry Department, The Pennsylvania State University, University Park, Pennsylvania 16802, United States
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44
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Woo CM, Gholap SL, Lu L, Kaneko M, Li Z, Ravikumar PC, Herzon SB. Development of enantioselective synthetic routes to (-)-kinamycin F and (-)-lomaiviticin aglycon. J Am Chem Soc 2012; 134:17262-73. [PMID: 23030272 PMCID: PMC3505684 DOI: 10.1021/ja307497h] [Citation(s) in RCA: 34] [Impact Index Per Article: 2.8] [Reference Citation Analysis] [Abstract] [MESH Headings] [Grants] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Indexed: 01/15/2023]
Abstract
The development of enantioselective synthetic routes to (-)-kinamycin F (9) and (-)-lomaiviticin aglycon (6) are described. The diazotetrahydrobenzo[b]fluorene (diazofluorene) functional group of the targets was prepared by fluoride-mediated coupling of a β-trimethylsilylmethyl-α,β-unsaturated ketone (38) with an oxidized naphthoquinone (19), palladium-catalyzed cyclization (39→37), and diazo transfer (37→53). The D-ring precursors 60 and 68 were prepared from m-cresol and 3-ethylphenol, respectively. Coupling of the β-trimethylsilylmethyl-α,β-unsaturated ketone 60 with the juglone derivative 61, cyclization, and diazo transfer provided the advanced diazofluorene 63, which was elaborated to (-)-kinamycin F (9) in three steps. The diazofluorene 87 was converted to the C(2)-symmetric lomaiviticin aglycon precursor 91 by enoxysilane formation and oxidative dimerization with manganese tris(hexafluoroacetylacetonate) (94, 26%). The stereochemical outcome in the coupling is attributed to the steric bias engendered by the mesityl acetal of 87 and contact ion pairing of the intermediates. The coupling product 91 was deprotected (tert-butylhydrogen peroxide, trifluoroacetic acid-dichloromethane) to form mixtures of the chain isomer of lomaiviticin aglycon 98 and the ring isomer 6. These mixtures converged on purification or standing to the ring isomer 6 (39-41% overall). The scope of the fluoride-mediated coupling process is delineated (nine products, average yield = 72%); a related enoxysilane quinonylation reaction is also described (10 products, average yield = 77%). We establish that dimeric diazofluorenes undergo hydrodediazotization 2-fold faster than related monomeric diazofluorenes. This enhanced reactivity may underlie the cytotoxic effects of (-)-lomaiviticin A (1). The simple diazofluorene 103 is a potent inhibitor of ovarian cancer stem cells (IC(50) = 500 nM).
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Affiliation(s)
- Christina M. Woo
- Department of Chemistry, Yale University, New Haven, CT 06520, United States
| | | | - Liang Lu
- Department of Chemistry, Yale University, New Haven, CT 06520, United States
| | - Miho Kaneko
- Department of Chemistry, Yale University, New Haven, CT 06520, United States
| | - Zhenwu Li
- Department of Chemistry, Yale University, New Haven, CT 06520, United States
| | - P. C. Ravikumar
- Department of Chemistry, Yale University, New Haven, CT 06520, United States
| | - Seth B. Herzon
- Department of Chemistry, Yale University, New Haven, CT 06520, United States
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Woo CM, Beizer NE, Janso JE, Herzon SB. Isolation of Lomaiviticins C–E, Transformation of Lomaiviticin C to Lomaiviticin A, Complete Structure Elucidation of Lomaiviticin A, and Structure–Activity Analyses. J Am Chem Soc 2012; 134:15285-8. [DOI: 10.1021/ja3074984] [Citation(s) in RCA: 51] [Impact Index Per Article: 4.3] [Reference Citation Analysis] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Indexed: 11/28/2022]
Affiliation(s)
- Christina M. Woo
- Department of Chemistry, Yale University, New Haven, Connecticut 06520, United
States
| | - Nina E. Beizer
- Department of Chemistry, Yale University, New Haven, Connecticut 06520, United
States
| | - Jeffrey E. Janso
- Natural Products
− Worldwide
Medicinal Chemistry, Pfizer Worldwide Research and Development, 445 Eastern Point Road, Groton, Connecticut 06340, United States
| | - Seth B. Herzon
- Department of Chemistry, Yale University, New Haven, Connecticut 06520, United
States
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Nicolaou KC, Hale CRH, Nilewski C, Ioannidou HA. Constructing molecular complexity and diversity: total synthesis of natural products of biological and medicinal importance. Chem Soc Rev 2012; 41:5185-238. [PMID: 22743704 PMCID: PMC3426871 DOI: 10.1039/c2cs35116a] [Citation(s) in RCA: 159] [Impact Index Per Article: 13.3] [Reference Citation Analysis] [Abstract] [MESH Headings] [Grants] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Indexed: 12/23/2022]
Abstract
The advent of organic synthesis and the understanding of the molecule as they occurred in the nineteenth century and were refined in the twentieth century constitute two of the most profound scientific developments of all time. These discoveries set in motion a revolution that shaped the landscape of the molecular sciences and changed the world. Organic synthesis played a major role in this revolution through its ability to construct the molecules of the living world and others like them whose primary element is carbon. Although the early beginnings of organic synthesis came about serendipitously, organic chemists quickly recognized its potential and moved decisively to advance and exploit it in myriad ways for the benefit of mankind. Indeed, from the early days of the synthesis of urea and the construction of the first carbon-carbon bond, the art of organic synthesis improved to impressively high levels of sophistication. Through its practice, today chemists can synthesize organic molecules--natural and designed--of all types of structural motifs and for all intents and purposes. The endeavor of constructing natural products--the organic molecules of nature--is justly called both a creative art and an exact science. Often called simply total synthesis, the replication of nature's molecules in the laboratory reflects and symbolizes the state of the art of synthesis in general. In the last few decades a surge in total synthesis endeavors around the world led to a remarkable collection of achievements that covers a wide ranging landscape of molecular complexity and diversity. In this article, we present highlights of some of our contributions in the field of total synthesis of natural products of biological and medicinal importance. For perspective, we also provide a listing of selected examples of additional natural products synthesized in other laboratories around the world over the last few years.
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Affiliation(s)
- K C Nicolaou
- Department of Chemistry and Skaggs Institute for Chemical Biology, The Scripps Research Institute, 10550 North Torrey Pines Road, La Jolla, California 92037, USA
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Guo F, Clift MD, Thomson RJ. Oxidative Coupling of Enolates, Enol Silanes and Enamines: Methods and Natural Product Synthesis. European J Org Chem 2012; 2012:4881-4896. [PMID: 23471479 DOI: 10.1002/ejoc.201200665] [Citation(s) in RCA: 109] [Impact Index Per Article: 9.1] [Reference Citation Analysis] [Abstract] [Key Words] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Indexed: 11/10/2022]
Abstract
The oxidative coupling of enolates, enol silanes, and enamines provides a direct method for the construction of useful 1,4-dicarbonyl synthons. Despite being first reported in 1935, with subsequent important advances beginning in the 1970's, the development of this powerful reaction into a reliable methodology was somewhat limited. In recent years, there have been a number of reports from several research groups demonstrating advances in several neglected areas of oxidative coupling. This microreview summarizes these new advances in methodology and provides an overview of recent natural product syntheses that showcase the power of these transformations.
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Affiliation(s)
- Fenghai Guo
- Department of Chemistry, Northwestern University, 2145 Sheridan Rd, Evanston, Illinois 60208, USA
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Trofimov BA, Schmidt EY, Zorina NV, Ivanova EV, Ushakov IA, Mikhaleva AI. Transition Metal-Free Stereoselective α-Vinylation of Cyclic Ketones with Arylacetylenes in the Superbasic Catalytic Triad Potassium Hydroxide/tert-Butyl Alcohol/Dimethyl Sulfoxide. Adv Synth Catal 2012. [DOI: 10.1002/adsc.201200210] [Citation(s) in RCA: 29] [Impact Index Per Article: 2.4] [Reference Citation Analysis] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Indexed: 11/12/2022]
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49
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Baranczak A, Sulikowski GA. Synthetic studies directed toward dideoxy lomaiviticinone lead to unexpected 1,2-oxazepine and isoxazole formation. Org Lett 2012; 14:1027-9. [PMID: 22309201 DOI: 10.1021/ol203390w] [Citation(s) in RCA: 17] [Impact Index Per Article: 1.4] [Reference Citation Analysis] [Abstract] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Indexed: 11/28/2022]
Abstract
In the course of studies directed toward the synthesis of dideoxy lomaiviticinone, 3-(nitromethyl)cyclohexenones 2a (X = H) and 2b (X = I) were prepared. The corresponding enolates were reacted with naphthazarin (1) and unexpectedly afforded 1,2-oxazepine 3 and isoxazole 4, respectively. Rationale for their formation is proposed.
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Affiliation(s)
- Aleksandra Baranczak
- Department of Chemistry, Vanderbilt University, Vanderbilt Institute of Chemical Biology, Nashville, Tennessee 37235, USA
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50
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Larson RT, Clift MD, Thomson RJ. Total Synthesis of the Galbulimima Alkaloid (−)-GB17. Angew Chem Int Ed Engl 2012. [DOI: 10.1002/ange.201108227] [Citation(s) in RCA: 5] [Impact Index Per Article: 0.4] [Reference Citation Analysis] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Indexed: 11/05/2022]
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