1
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Cao Y, Mieres-Perez J, Rowen JF, Sanchez-Garcia E, Sander W, Morgenstern K. Chirality control of a single carbene molecule by tip-induced van der Waals interactions. Nat Commun 2023; 14:4500. [PMID: 37495625 PMCID: PMC10371978 DOI: 10.1038/s41467-023-39870-y] [Citation(s) in RCA: 4] [Impact Index Per Article: 4.0] [Reference Citation Analysis] [Abstract] [Grants] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Received: 11/10/2022] [Accepted: 06/28/2023] [Indexed: 07/28/2023] Open
Abstract
Non-covalent interactions such as van der Waals interactions and hydrogen bonds are crucial for the chiral induction and control of molecules, but it remains difficult to study them at the single-molecule level. Here, we report a carbene molecule on a copper surface as a prototype of an anchored molecule with a facile chirality change. We examine the influence of the attractive van der Waals interactions on the chirality change by regulating the tip-molecule distance, resulting in an excess of a carbene enantiomer. Our model study provides insight into the change of molecular chirality controlled by van der Waals interactions, which is fundamental for understanding the mechanisms of chiral induction and amplification.
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Affiliation(s)
- Yunjun Cao
- Physical Chemistry I, Ruhr-Universität Bochum, Universitätsstr. 150, D-44801, Bochum, Germany
| | - Joel Mieres-Perez
- Computational Bioengineering, Technical University Dortmund, Emil-Figge-Str. 66, 44227, Dortmund, Germany
- Computational Biochemistry, Universität Duisburg-Essen, Universitätsstr. 2, D-45141, Essen, Germany
| | - Julien Frederic Rowen
- Organic Chemistry II, Ruhr-Universität Bochum, Universitätsstr. 150, D-44801, Bochum, Germany
| | - Elsa Sanchez-Garcia
- Computational Bioengineering, Technical University Dortmund, Emil-Figge-Str. 66, 44227, Dortmund, Germany
- Computational Biochemistry, Universität Duisburg-Essen, Universitätsstr. 2, D-45141, Essen, Germany
| | - Wolfram Sander
- Organic Chemistry II, Ruhr-Universität Bochum, Universitätsstr. 150, D-44801, Bochum, Germany
| | - Karina Morgenstern
- Physical Chemistry I, Ruhr-Universität Bochum, Universitätsstr. 150, D-44801, Bochum, Germany.
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2
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Srivastava G, Štacko P, Mendieta-Moreno JI, Edalatmanesh S, Kistemaker JCM, Heideman GH, Zoppi L, Parschau M, Feringa BL, Ernst KH. Driving a Third Generation Molecular Motor with Electrons Across a Surface. ACS NANO 2023; 17:3931-3938. [PMID: 36794964 DOI: 10.1021/acsnano.2c12340] [Citation(s) in RCA: 4] [Impact Index Per Article: 4.0] [Reference Citation Analysis] [Abstract] [Key Words] [Track Full Text] [Subscribe] [Scholar Register] [Indexed: 06/18/2023]
Abstract
Excitation of single molecules with electrons tunneling between a sharp metallic tip of a scanning tunneling microscope and a metal surface is one way to study and control dynamics of molecules on surfaces. Electron tunneling induced dynamics may lead to hopping, rotation, molecular switching, or chemical reactions. Molecular motors that convert rotation of subgroups into lateral movement on a surface can in principle also be driven by tunneling electrons. For such surface-bound motor molecules the efficiency of motor action with respect to electron dose is still not known. Here, the response of a molecular motor containing two rotor units in the form of overcrowded alkene groups to inelastic electron tunneling has been examined on a Cu(111) surface in ultrahigh vacuum at 5 K. Upon vibrational excitation, switching between different molecular conformations is observed, including conversion of enantiomeric states of chiral conformations. Tunneling at energies in the range of electronic excitations causes activation of motor action and movement across the surface. The expected unidirectional rotation of the two rotor units causes forward movements but with a low degree of translational directionality.
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Affiliation(s)
- Gitika Srivastava
- Molecular Surface Science and Coating Technology Laboratory, Empa, Swiss Federal Laboratories for Materials Science and Technology, Überlandstrasse 129, 8600 Dübendorf, Switzerland
| | - Peter Štacko
- Centre for Systems Chemistry, Stratingh Institute for Chemistry and Zernike Institute for Advanced Materials, University of Groningen, Nijenborgh 4, 9747 AG Groningen, Netherlands
| | - Jesús I Mendieta-Moreno
- Nanosurf Laboratory, Institute of Physics, The Czech Academy of Sciences, Cukrovarnická 10, 162 00 Prague, Czech Republic
| | - Shayan Edalatmanesh
- Nanosurf Laboratory, Institute of Physics, The Czech Academy of Sciences, Cukrovarnická 10, 162 00 Prague, Czech Republic
| | - Jos C M Kistemaker
- Centre for Systems Chemistry, Stratingh Institute for Chemistry and Zernike Institute for Advanced Materials, University of Groningen, Nijenborgh 4, 9747 AG Groningen, Netherlands
| | - G Henrieke Heideman
- Centre for Systems Chemistry, Stratingh Institute for Chemistry and Zernike Institute for Advanced Materials, University of Groningen, Nijenborgh 4, 9747 AG Groningen, Netherlands
| | - Laura Zoppi
- Molecular Surface Science and Coating Technology Laboratory, Empa, Swiss Federal Laboratories for Materials Science and Technology, Überlandstrasse 129, 8600 Dübendorf, Switzerland
| | - Manfred Parschau
- Molecular Surface Science and Coating Technology Laboratory, Empa, Swiss Federal Laboratories for Materials Science and Technology, Überlandstrasse 129, 8600 Dübendorf, Switzerland
| | - Ben L Feringa
- Centre for Systems Chemistry, Stratingh Institute for Chemistry and Zernike Institute for Advanced Materials, University of Groningen, Nijenborgh 4, 9747 AG Groningen, Netherlands
| | - Karl-Heinz Ernst
- Molecular Surface Science and Coating Technology Laboratory, Empa, Swiss Federal Laboratories for Materials Science and Technology, Überlandstrasse 129, 8600 Dübendorf, Switzerland
- Nanosurf Laboratory, Institute of Physics, The Czech Academy of Sciences, Cukrovarnická 10, 162 00 Prague, Czech Republic
- Department of Chemistry, University of Zurich, Winterthurerstrasse 190, 8057 Zürich, Switzerland
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3
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Zhang C, Kazuma E, Kim Y. Steering the Reaction Pathways of Terminal Alkynes by Introducing Oxygen Species: From C-C Coupling to C-H Activation. J Am Chem Soc 2022; 144:10282-10290. [PMID: 35587810 DOI: 10.1021/jacs.2c01026] [Citation(s) in RCA: 0] [Impact Index Per Article: 0] [Reference Citation Analysis] [Abstract] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Indexed: 11/29/2022]
Abstract
Selective regulation of chemical reactions is crucial in chemistry. Oxygen, as a key reagent in ubiquitous oxidative chemistry, exhibits great potential in regulating molecular assemblies, and more importantly, chemical reactions in molecular systems supported by metal surfaces. However, the unique catalytic performance and reaction mechanisms of oxygen species remain elusive, which are essential for understanding reaction selection and regulation. In this study, by a combination of scanning tunneling microscopy (STM) imaging/manipulations and density functional theory (DFT) calculations, we showed that the on-surface reaction pathways of terminal alkynes could be steered from C-C coupling to C-H activation with high selectivity by introducing O2 into the molecular system. The catalytic performance and reaction mechanisms of oxygen species were explored in the C-H activation processes, and both molecular O2 and atomic O could efficiently steer the reaction pathways. These results would provide a fundamental understanding of interfacial catalytic reaction processes.
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Affiliation(s)
- Chi Zhang
- Surface and Interface Science Laboratory, RIKEN, 2-1 Hirosawa, Wako, Saitama 351-0198, Japan.,Interdisciplinary Materials Research Center, College of Materials Science and Engineering, Tongji University, Caoan Road 4800, Shanghai 201804, People's Republic of China
| | - Emiko Kazuma
- Surface and Interface Science Laboratory, RIKEN, 2-1 Hirosawa, Wako, Saitama 351-0198, Japan.,Department of Applied Chemistry, The University of Tokyo, 7-3-1 Hongo, Bunkyo-ku, Tokyo 113-8656, Japan
| | - Yousoo Kim
- Surface and Interface Science Laboratory, RIKEN, 2-1 Hirosawa, Wako, Saitama 351-0198, Japan.,Department of Applied Chemistry, The University of Tokyo, 7-3-1 Hongo, Bunkyo-ku, Tokyo 113-8656, Japan
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4
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Leoni T, Lelaidier T, Thomas A, Ranguis A, Siri O, Attaccalite C, Becker C. On-surface chemistry using local high electric fields. NANOSCALE ADVANCES 2021; 3:5565-5569. [PMID: 36133257 PMCID: PMC9419876 DOI: 10.1039/d1na00383f] [Citation(s) in RCA: 0] [Impact Index Per Article: 0] [Reference Citation Analysis] [Abstract] [Grants] [Track Full Text] [Download PDF] [Figures] [Subscribe] [Scholar Register] [Received: 05/23/2021] [Accepted: 08/05/2021] [Indexed: 06/16/2023]
Abstract
Dihydrotetraazapentacene (DHTAP) molecules can be dehydrogenated on the surface to form tetraazapentacene (TAP), by applying a high electric field between the tip of a scanning tunnelling microscope (STM) and a metallic substrate in the zero-current limit. The method can be applied either to single molecules or more extended layers by successively scanning a selected area using an STM tip.
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Affiliation(s)
- Thomas Leoni
- Aix Marseille University, CNRS, CINaM UMR 7325 Campus de Luminy 13288 Marseille Cedex 09 France
| | - Tony Lelaidier
- Aix Marseille University, CNRS, CINaM UMR 7325 Campus de Luminy 13288 Marseille Cedex 09 France
| | - Anthony Thomas
- Aix Marseille University, CNRS, CINaM UMR 7325 Campus de Luminy 13288 Marseille Cedex 09 France
| | - Alain Ranguis
- Aix Marseille University, CNRS, CINaM UMR 7325 Campus de Luminy 13288 Marseille Cedex 09 France
| | - Olivier Siri
- Aix Marseille University, CNRS, CINaM UMR 7325 Campus de Luminy 13288 Marseille Cedex 09 France
| | - Claudio Attaccalite
- Aix Marseille University, CNRS, CINaM UMR 7325 Campus de Luminy 13288 Marseille Cedex 09 France
| | - Conrad Becker
- Aix Marseille University, CNRS, CINaM UMR 7325 Campus de Luminy 13288 Marseille Cedex 09 France
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5
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Abstract
In the past several decades, light alkane dehydrogenation to mono-olefins, especially propane dehydrogenation to propylene has gained widespread attention and much development in the field of research and commercial application. Under suitable conditions, the supported Pt-Sn and CrOx catalysts widely used in industry exhibit satisfactory dehydrogenation activity and selectivity. However, the high cost of Pt and the potential environmental problems of CrOx have driven researchers to improve the coking and sintering resistance of Pt catalysts, and to find new non-noble metal and environment-friendly catalysts. As for the development of the reactor, it should be noted that low operation pressure is beneficial for improving the single-pass conversion, decreasing the amount of unconverted alkane recycled back to the reactor, and reducing the energy consumption of the whole process. Therefore, the research direction of reactor improvement is towards reducing the pressure drop. This review is aimed at introducing the characteristics of the dehydrogenation reaction, the progress made in the development of catalysts and reactors, and a new understanding of reaction mechanism as well as its guiding role in the development of catalyst and reactor.
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Affiliation(s)
- Chunyi Li
- State Key Laboratory of Heavy Oil Processing, China University of Petroleum, Qingdao, 266580, P. R. China.
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6
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Shiotari A, Hamada I, Nakae T, Mori S, Okujima T, Uno H, Sakaguchi H, Hamamoto Y, Morikawa Y, Sugimoto Y. Manipulable Metal Catalyst for Nanographene Synthesis. NANO LETTERS 2020; 20:8339-8345. [PMID: 33090808 DOI: 10.1021/acs.nanolett.0c03510] [Citation(s) in RCA: 2] [Impact Index Per Article: 0.5] [Reference Citation Analysis] [Abstract] [Key Words] [Track Full Text] [Subscribe] [Scholar Register] [Indexed: 06/11/2023]
Abstract
Performing bottom-up synthesis by using molecules adsorbed on a surface is an effective method to yield functional polycyclic aromatic hydrocarbons (PAHs) and nanocarbon materials. The intramolecular cyclodehydrogenation of hydrocarbons is a critical process in this synthesis; however, thus far, its elementary steps have not been elucidated thoroughly. In this study, we utilize the metal tip of a low-temperature noncontact atomic force microscope as a manipulable metal surface to locally activate dehydrogenation for PAH-forming cyclodehydrogenation. This method leads to the dissociation of a H atom of an intermediate to yield the cyclodehydrogenated product in a target-selective and reproducible manner. We demonstrate the metal-tip-catalyzed dehydrogenation for both benzenoid and nonbenzonoid PAHs, suggesting its universal applicability as a catalyst for nanographene synthesis.
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Affiliation(s)
- Akitoshi Shiotari
- Department of Advanced Materials Science, The University of Tokyo, 5-1-5 Kashiwanoha, 277-8561 Kashiwa, Japan
| | - Ikutaro Hamada
- Department of Precision Engineering, Graduate School of Engineering, Osaka University, 565-0871 Suita, Japan
| | - Takahiro Nakae
- Institute of Advanced Energy, Kyoto University, 611-0011 Uji, Japan
| | - Shigeki Mori
- Advanced Research Support Center, Ehime University, 790-8577 Matsuyama, Japan
| | - Tetsuo Okujima
- Graduate School of Science and Engineering, Ehime University, 790-8577 Matsuyama, Japan
| | - Hidemitsu Uno
- Graduate School of Science and Engineering, Ehime University, 790-8577 Matsuyama, Japan
| | | | - Yuji Hamamoto
- Department of Precision Engineering, Graduate School of Engineering, Osaka University, 565-0871 Suita, Japan
| | - Yoshitada Morikawa
- Department of Precision Engineering, Graduate School of Engineering, Osaka University, 565-0871 Suita, Japan
- Research Center for Ultra-Precision Science and Technology, Graduate School of Engineering, Osaka University, 565-0871 Suita, Japan
| | - Yoshiaki Sugimoto
- Department of Advanced Materials Science, The University of Tokyo, 5-1-5 Kashiwanoha, 277-8561 Kashiwa, Japan
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7
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Wang YL, Sun K, Tu YB, Tao ML, Xie ZB, Yuan HK, Xiong ZH, Wang JZ. Chirality switching of the self-assembled CuPc domains induced by electric field. Phys Chem Chem Phys 2018; 20:7125-7131. [PMID: 29479594 DOI: 10.1039/c7cp08279g] [Citation(s) in RCA: 7] [Impact Index Per Article: 1.2] [Reference Citation Analysis] [Abstract] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Indexed: 12/24/2022]
Abstract
Chiral switching of the self-assembled domains of CuPc molecules on the Cd(0001) surface has been investigated by means of a low temperature scanning tunneling microscopy (STM). With the coverage increasing, the CuPc molecules show the structural evolutions from an initial gas-like state to a network phase, a square phase, and finally to a compact phase at full monolayer. In the network and square phases, the achiral CuPc molecules reveal both the point chirality and chiral domains. In particular, the chirality of network domain can be switched from one enantiomer to another driven by the electric filed from a STM tip, which can also lead to the lattice rotation of network phase. These results demonstrate that (i) there is strong interaction between the CuPc molecules and STM tip; (ii) the adsorbed CuPc molecules carry considerable net charge or polarizability due to the charge transfer; (iii) the network phase has a low barrier for the interconversion between right- and left-handed domains. Our findings are significant for the understanding and control of the domain's chirality in the self-assembled structures.
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Affiliation(s)
- Ya-Li Wang
- School of Physical Science and Technology, MOE Key Laboratory on Luminescence and Real-Time Analysis, Southwest University, Chongqing 400715, China.
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8
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MacLean O, Huang K, Leung L, Polanyi JC. Direct and Delayed Dynamics in Electron-Induced Surface Reaction. J Am Chem Soc 2017; 139:17368-17375. [DOI: 10.1021/jacs.7b07607] [Citation(s) in RCA: 8] [Impact Index Per Article: 1.1] [Reference Citation Analysis] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Indexed: 11/30/2022]
Affiliation(s)
- Oliver MacLean
- Lash Miller Chemical Laboratories,
Department of Chemistry and Institute of Optical Sciences, University of Toronto, 80 St. George Street, Toronto, Ontario M5S 3H6, Canada
| | - Kai Huang
- Lash Miller Chemical Laboratories,
Department of Chemistry and Institute of Optical Sciences, University of Toronto, 80 St. George Street, Toronto, Ontario M5S 3H6, Canada
| | - Lydie Leung
- Lash Miller Chemical Laboratories,
Department of Chemistry and Institute of Optical Sciences, University of Toronto, 80 St. George Street, Toronto, Ontario M5S 3H6, Canada
| | - John C. Polanyi
- Lash Miller Chemical Laboratories,
Department of Chemistry and Institute of Optical Sciences, University of Toronto, 80 St. George Street, Toronto, Ontario M5S 3H6, Canada
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9
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Godlewski S, Kawai H, Engelund M, Kolmer M, Zuzak R, Garcia-Lekue A, Novell-Leruth G, Echavarren AM, Sanchez-Portal D, Joachim C, Saeys M. Diels-Alder attachment of a planar organic molecule to a dangling bond dimer on a hydrogenated semiconductor surface. Phys Chem Chem Phys 2016; 18:16757-65. [PMID: 27271337 DOI: 10.1039/c6cp02346k] [Citation(s) in RCA: 7] [Impact Index Per Article: 0.9] [Reference Citation Analysis] [Abstract] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Indexed: 11/21/2022]
Abstract
Construction of single-molecule electronic devices requires the controlled manipulation of organic molecules and their properties. This could be achieved by tuning the interaction between the molecule and individual atoms by local "on-surface" chemistry, i.e., the controlled formation of chemical bonds between the species. We demonstrate here the reversible attachment of a planar conjugated polyaromatic molecule to a pair of unpassivated dangling bonds on a hydrogenated Ge(001):H surface via a Diels-Alder [4+2] addition using the tip of a scanning tunneling microscope (STM). Due to the small stability difference between the covalently bonded and a nearly undistorted structure attached to the dangling bond dimer by long-range dispersive forces, we show that at cryogenic temperatures the molecule can be switched between both configurations. The reversibility of this covalent bond forming reaction may be applied in the construction of complex circuits containing organic molecules with tunable properties.
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Affiliation(s)
- Szymon Godlewski
- Centre for Nanometer-Scale Science and Advanced Materials, NANOSAM, Faculty of Physics, Astronomy and Applied Computer Science, Jagiellonian University, Lojasiewicza 11, PL 30-348, Krakow, Poland.
| | - Hiroyo Kawai
- Institute of Materials Research and Engineering, 2 Fusionopolis Way, Innovis, #08-03, Singapore 138634, Singapore.
| | - Mads Engelund
- Centro de Fisica de Materiales CSIC-UPV/EHU, Paseo Manual de Lardizabal 5, E-20018, Donostia-San Sebastian, Spain
| | - Marek Kolmer
- Centre for Nanometer-Scale Science and Advanced Materials, NANOSAM, Faculty of Physics, Astronomy and Applied Computer Science, Jagiellonian University, Lojasiewicza 11, PL 30-348, Krakow, Poland.
| | - Rafal Zuzak
- Centre for Nanometer-Scale Science and Advanced Materials, NANOSAM, Faculty of Physics, Astronomy and Applied Computer Science, Jagiellonian University, Lojasiewicza 11, PL 30-348, Krakow, Poland.
| | - Aran Garcia-Lekue
- Donostia International Physics Center, Paseo Manual de Lardizabal 4, 20018, Donostia-San Sebastian, Spain and IKERBASQUE, Basque Foundation for Science, E-48013, Bilbao, Spain
| | - Gerard Novell-Leruth
- Laboratory for Chemical Technology, Ghent University, Technologiepark 914, 9052 Ghent, Belgium
| | - Antonio M Echavarren
- Institute of Chemical Research of Catalonia (ICIQ), Avenida Països Catalans 16, 43007 Tarragona, Spain
| | - Daniel Sanchez-Portal
- Centro de Fisica de Materiales CSIC-UPV/EHU, Paseo Manual de Lardizabal 5, E-20018, Donostia-San Sebastian, Spain and Donostia International Physics Center, Paseo Manual de Lardizabal 4, 20018, Donostia-San Sebastian, Spain
| | - Christian Joachim
- Nanosciences Group & MANA Satellite, CEMES-CNRS, 29 rue Jeanne Marvig, F-31055 Toulouse, France and International Center for Materials Nanoarchitectonics (MANA), National Institute for Materials Science (NIMS), 1-1 Namiki, Tsukuba, Ibaraki 305-0044, Japan
| | - Mark Saeys
- Laboratory for Chemical Technology, Ghent University, Technologiepark 914, 9052 Ghent, Belgium
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10
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Dinca LE, MacLeod JM, Lipton-Duffin J, Fu C, Ma D, Perepichka DF, Rosei F. Tip-induced C-H activation and oligomerization of thienoanthracenes. Chem Commun (Camb) 2014; 50:8791-3. [PMID: 24967741 DOI: 10.1039/c4cc03719g] [Citation(s) in RCA: 13] [Impact Index Per Article: 1.3] [Reference Citation Analysis] [Abstract] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Indexed: 01/28/2023]
Abstract
The tip of a scanning tunneling microscope (STM) can be used to dehydrogenate freely-diffusing tetrathienoanthracene (TTA) molecules on Cu(111), trapping the molecules into metal-coordinated oligomeric structures. The process proceeds at bias voltages above ~3 V and produces organometallic structures identical to those resulting from the thermally-activated cross-coupling of a halogenated analogue. The process appears to be substrate dependent: no oligomerization was observed on Ag(111) or HOPG. This approach demonstrates the possibility of controlled synthesis and nanoscale patterning of 2D oligomer structures on selected surfaces.
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Affiliation(s)
- L E Dinca
- Centre Énergie, Matériaux et Télécommunications, Institut National de la Recherche Scientifique, Université du Québec, 1650 boulevard Lionel-Boulet, Varennes, QC J3X 1S2, Canada.
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11
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Ernst KH. Charged-molecule physics. ACS NANO 2014; 8:5375-5379. [PMID: 24916331 DOI: 10.1021/nn5030219] [Citation(s) in RCA: 0] [Impact Index Per Article: 0] [Reference Citation Analysis] [Abstract] [Track Full Text] [Subscribe] [Scholar Register] [Indexed: 06/03/2023]
Abstract
Commonly, chemical modification is considered to be the ultimate way to tune properties of graphene for new devices. The work of Riss and colleagues reported in this issue of ACS Nano demonstrates a reverse approach that enables tuning of molecular properties with graphene. When a back-gate voltage is used, the Fermi level of graphene is shifted with respect to the electronic states of the molecules. This extra electric field opens fascinating new routes toward ultimate sensitive sensors or experimental devices for studying new molecular physics.
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Affiliation(s)
- Karl-Heinz Ernst
- Empa , Swiss Federal Laboratories for Materials Science and Technology, Überlandstrasse 129, 8600 Dübendorf, Switzerland
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12
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Yang K, Liu L, Zhang L, Xiao W, Fei X, Chen H, Du S, Ernst KH, Gao HJ. Reversible achiral-to-chiral switching of single Mn--phthalocyanine molecules by thermal hydrogenation and inelastic electron tunneling dehydrogenation. ACS NANO 2014; 8:2246-2251. [PMID: 24484418 DOI: 10.1021/nn405490h] [Citation(s) in RCA: 14] [Impact Index Per Article: 1.4] [Reference Citation Analysis] [Abstract] [Track Full Text] [Subscribe] [Scholar Register] [Indexed: 06/03/2023]
Abstract
Induction of chirality in planar adsorbates by hydrogenation of phthalocyanine molecules on a gold surface is demonstrated. This process merely lowers the molecular symmetry from 4- to 2-fold, but also breaks the mirror symmetry of the entire adsorbate complex (molecule and surface), thus rendering it chiral without any realignment at the surface. Repositioning of single molecules by manipulation with the scanning tunneling microscope (STM) causes interconversion of enantiomers. Dehydrogenation of the adsorbate by means of inelastic electron tunneling restores the mirror symmetry of the adsorbate complex. STM as well as density functional theory (DFT) calculations show that chirality is actually imprinted into the electronic molecular system by the surface, i.e., the lowest unoccupied orbital is devoid of mirror symmetry.
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Affiliation(s)
- Kai Yang
- Institute of Physics, Chinese Academy of Sciences , Beijing 100190, China
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13
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Roy S, Mujica V, Ratner MA. Chemistry at molecular junctions: Rotation and dissociation of O2 on the Ag(110) surface induced by a scanning tunneling microscope. J Chem Phys 2013; 139:074702. [DOI: 10.1063/1.4818163] [Citation(s) in RCA: 20] [Impact Index Per Article: 1.8] [Reference Citation Analysis] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Indexed: 11/14/2022] Open
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14
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Burema SR, Seufert K, Auwärter W, Barth JV, Bocquet ML. Probing nitrosyl ligation of surface-confined metalloporphyrins by inelastic electron tunneling spectroscopy. ACS NANO 2013; 7:5273-81. [PMID: 23718257 PMCID: PMC3833350 DOI: 10.1021/nn4010582] [Citation(s) in RCA: 9] [Impact Index Per Article: 0.8] [Reference Citation Analysis] [Abstract] [Key Words] [Track Full Text] [Subscribe] [Scholar Register] [Indexed: 05/06/2023]
Abstract
Complexes obtained by the ligation of nitric oxide (NO) to metalloporphyrins represent important model systems with biological relevance. Herein we report a molecular-level investigation of surface-confined cobalt tetraphenyl porphyrin (Co-TPP) species and their interaction with NO under ultrahigh vacuum conditions. It is demonstrated that individual NO adducts can be desorbed using the atomically sharp tip of a scanning tunneling microscope, whereby a writing process is implemented for fully saturated regular metalloporphyrin arrays. The low-energy vibrational characteristics of individual Co-TPP-nitrosyl complexes probed by inelastic electron tunneling spectroscopy (IETS) reveal a prominent signature at an energy of ~/=31 meV. Using density functional theory-based IETS simulations-the first to be performed on such an extensive interfacial nanosystem-we succeed to reproduce the low-frequency spectrum for the NO-ligated complex and explain the absence of IETS activity for bare Co-TPP. Moreover, we can conclusively assign the IETS peak of NO-Co-TPP to a unique vibration mode involving the NO complexation site, namely, the in-plane Co-N-O rocking mode. In addition, we verify that the propensity rules previously designed on small aromatic systems and molecular fragments hold true for a metal-organic entity. This work notably permits one to envisage IETS spectroscopy as a sensitive tool to chemically characterize hybrid interfaces formed by complex metal-organic units and gaseous adducts.
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Affiliation(s)
- Shiri R. Burema
- Laboratoire de Chimie, CNRS UMR 5182, Ecole Normale Supérieure de Lyon, 46 Allée d’Italie, 69364 CEDEX07 Lyon, France
| | - Knud Seufert
- Physik Department E20, Technische Universität München, James-Franck Str. D-85748 Garching, Germany
| | - Willi Auwärter
- Physik Department E20, Technische Universität München, James-Franck Str. D-85748 Garching, Germany
| | - Johannes V. Barth
- Physik Department E20, Technische Universität München, James-Franck Str. D-85748 Garching, Germany
| | - Marie-Laure Bocquet
- Laboratoire de Chimie, CNRS UMR 5182, Ecole Normale Supérieure de Lyon, 46 Allée d’Italie, 69364 CEDEX07 Lyon, France
- Address correspondence to
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15
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Motobayashi K, Katano S, Kim Y, Kawai M. Spectral Fitting of Action Spectra for Motions and Reactions of Single Molecules on Metal Surfaces. BULLETIN OF THE CHEMICAL SOCIETY OF JAPAN 2013. [DOI: 10.1246/bcsj.20120190] [Citation(s) in RCA: 5] [Impact Index Per Article: 0.5] [Reference Citation Analysis] [Track Full Text] [Subscribe] [Scholar Register] [Indexed: 11/12/2022]
Affiliation(s)
- Kenta Motobayashi
- Department of Advanced Materials Science, The University of Tokyo
- RIKEN Advanced Science Institute
- Catalysis Research Center, Hokkaido University
| | - Satoshi Katano
- RIKEN Advanced Science Institute
- Research Institute of Electrical Communication, Tohoku University
| | | | - Maki Kawai
- Department of Advanced Materials Science, The University of Tokyo
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16
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Burema SR, Bocquet ML. A sum rule for inelastic electron tunneling spectroscopy: an ab initio study of a donor (TTF) and acceptors (TCNE, TCNQ and DCNQI) parallelly oriented on Cu(100). Phys Chem Chem Phys 2013; 15:16111-9. [DOI: 10.1039/c3cp53049c] [Citation(s) in RCA: 6] [Impact Index Per Article: 0.5] [Reference Citation Analysis] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Indexed: 01/01/2023]
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17
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Burema SR, Bocquet ML. Resonance Charges to Encode Selection Rules in Inelastic Electron Tunneling Spectroscopy. J Phys Chem Lett 2012; 3:3007-3011. [PMID: 26292242 DOI: 10.1021/jz3012832] [Citation(s) in RCA: 5] [Impact Index Per Article: 0.4] [Reference Citation Analysis] [Abstract] [Key Words] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Indexed: 06/04/2023]
Abstract
From extensive simulations of a set of covalently grafted phenyl derivatives onto Cu(111), we derive a simplistic rule that selectively predicts the onset of stretching vibrations in inelastic electron tunneling spectroscopy (IETS) with the scanning tunneling microscope. Indeed the rise (extinction) of the highest-frequency modes is found to correlate to the accumulation (depletion) of π electron density at the metal-organic contact point. This π electron density can be fine-tuned by the usage of (de) activating aromatic substituent at different ring positions. This finding provides a simple analysis tool that can be used to reveal structural characteristics on the atomic scale by IETS.
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Affiliation(s)
- Shiri R Burema
- Ecole Normale Supérieure de Lyon, Laboratoire de Chimie, CNRS UMR 5182, 46 Allée d'Italie, 69364 CEDEX07 Lyon, France
| | - Marie-Laure Bocquet
- Ecole Normale Supérieure de Lyon, Laboratoire de Chimie, CNRS UMR 5182, 46 Allée d'Italie, 69364 CEDEX07 Lyon, France
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Kudernac T, Ruangsupapichat N, Parschau M, Maciá B, Katsonis N, Harutyunyan SR, Ernst KH, Feringa BL. Electrically driven directional motion of a four-wheeled molecule on a metal surface. Nature 2011; 479:208-11. [PMID: 22071765 DOI: 10.1038/nature10587] [Citation(s) in RCA: 496] [Impact Index Per Article: 38.2] [Reference Citation Analysis] [Abstract] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Received: 01/10/2011] [Accepted: 09/15/2011] [Indexed: 11/09/2022]
Abstract
Propelling single molecules in a controlled manner along an unmodified surface remains extremely challenging because it requires molecules that can use light, chemical or electrical energy to modulate their interaction with the surface in a way that generates motion. Nature's motor proteins have mastered the art of converting conformational changes into directed motion, and have inspired the design of artificial systems such as DNA walkers and light- and redox-driven molecular motors. But although controlled movement of single molecules along a surface has been reported, the molecules in these examples act as passive elements that either diffuse along a preferential direction with equal probability for forward and backward movement or are dragged by an STM tip. Here we present a molecule with four functional units--our previously reported rotary motors--that undergo continuous and defined conformational changes upon sequential electronic and vibrational excitation. Scanning tunnelling microscopy confirms that activation of the conformational changes of the rotors through inelastic electron tunnelling propels the molecule unidirectionally across a Cu(111) surface. The system can be adapted to follow either linear or random surface trajectories or to remain stationary, by tuning the chirality of the individual motor units. Our design provides a starting point for the exploration of more sophisticated molecular mechanical systems with directionally controlled motion.
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Affiliation(s)
- Tibor Kudernac
- Centre for Systems Chemistry, Stratingh Institute for Chemistry, University of Groningen, Nijenborgh 4, 9747 AG Groningen, The Netherlands
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