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Cassabaum AA, Bera K, Rich CC, Nebgen BR, Kwang SY, Clapham ML, Frontiera RR. Femtosecond stimulated Raman spectro-microscopy for probing chemical reaction dynamics in solid-state materials. J Chem Phys 2020; 153:030901. [DOI: 10.1063/5.0009976] [Citation(s) in RCA: 3] [Impact Index Per Article: 0.6] [Reference Citation Analysis] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Indexed: 02/06/2023] Open
Affiliation(s)
- Alyssa A. Cassabaum
- Department of Chemistry, University of Minnesota, Minneapolis, Minnesota 55455, USA
| | - Kajari Bera
- Department of Chemistry, University of Minnesota, Minneapolis, Minnesota 55455, USA
| | - Christopher C. Rich
- Department of Chemistry, University of Minnesota, Minneapolis, Minnesota 55455, USA
| | - Bailey R. Nebgen
- Department of Chemistry, University of Minnesota, Minneapolis, Minnesota 55455, USA
| | - Siu Yi Kwang
- Department of Chemistry, University of Minnesota, Minneapolis, Minnesota 55455, USA
| | - Margaret L. Clapham
- Department of Chemistry, University of Minnesota, Minneapolis, Minnesota 55455, USA
| | - Renee R. Frontiera
- Department of Chemistry, University of Minnesota, Minneapolis, Minnesota 55455, USA
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2
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Joy S, Periyasamy G. Influence of explicit water molecules on the charge migration dynamics of peptidomimetics: a DFT study. Theor Chem Acc 2020. [DOI: 10.1007/s00214-020-02609-9] [Citation(s) in RCA: 0] [Impact Index Per Article: 0] [Reference Citation Analysis] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Indexed: 11/28/2022]
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3
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Noble JA, Marceca E, Dedonder C, Jouvet C. Influence of the N atom and its position on electron photodetachment of deprotonated indole and azaindole. Phys Chem Chem Phys 2020; 22:27290-27299. [DOI: 10.1039/d0cp03609a] [Citation(s) in RCA: 3] [Impact Index Per Article: 0.6] [Reference Citation Analysis] [Abstract] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Indexed: 11/21/2022]
Abstract
Dipole bound state and its vibrational structure observed in deprotonated 7-azaindole by recording the signal of 7-azaindolyl stable neutral radical.
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Affiliation(s)
- Jennifer A. Noble
- CNRS
- Aix Marseille Univ
- PIIM
- Physique des Interactions Ioniques et Moléculaires
- UMR 7345
| | - Ernesto Marceca
- INQUIMAE (CONICET – Universidad de Buenos Aires)
- DQIAQF (Facultad de Ciencias Exactas y Naturales
- Universidad de Buenos Aires)
- Ciudad Universitaria
- 1428 Buenos Aires
| | - Claude Dedonder
- CNRS
- Aix Marseille Univ
- PIIM
- Physique des Interactions Ioniques et Moléculaires
- UMR 7345
| | - Christophe Jouvet
- CNRS
- Aix Marseille Univ
- PIIM
- Physique des Interactions Ioniques et Moléculaires
- UMR 7345
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4
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Bull JN, Carrascosa E, Giacomozzi L, Bieske EJ, Stockett MH. Ion mobility action spectroscopy of flavin dianions reveals deprotomer-dependent photochemistry. Phys Chem Chem Phys 2018; 20:19672-19681. [PMID: 30014081 PMCID: PMC6063075 DOI: 10.1039/c8cp03244k] [Citation(s) in RCA: 19] [Impact Index Per Article: 2.7] [Reference Citation Analysis] [Abstract] [Track Full Text] [Figures] [Journal Information] [Subscribe] [Scholar Register] [Indexed: 01/27/2023]
Abstract
Photo-induced proton transfer, deprotomer-dependent photochemistry, and intramolecular charge transfer in flavin anions are investigated using action spectroscopy.
The intrinsic optical properties and photochemistry of flavin adenine dinucleotide (FAD) dianions are investigated using a combination of tandem ion mobility spectrometry and action spectroscopy. Two principal isomers are observed, the more stable form being deprotonated on the isoalloxazine group and a phosphate (N-3,PO4 deprotomer), and the other on the two phosphates (PO4,PO4 deprotomer). Ion mobility data and electronic action spectra suggest that photo-induced proton transfer occurs from the isoalloxazine group to a phosphate group, converting the PO4,PO4 deprotomer to the N-3,PO4 deprotomer. Comparisons of the isomer selective action spectra of FAD dianions and flavin monoanions with solution spectra and gas-phase photodissociation action spectra suggests that solvation shifts the electronic absorption of the deprotonated isoalloxazine group to higher energy. This is interpreted as evidence for significant charge transfer in the lowest optical transition of deprotonated isoalloxazine. Overall, this work demonstrates that the site of deprotonation of flavin anions strongly affects their electronic absorptions and photochemistry.
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Affiliation(s)
- James N Bull
- School of Chemistry, University of Melbourne, Melbourne, VIC 3010, Australia
| | - Eduardo Carrascosa
- School of Chemistry, University of Melbourne, Melbourne, VIC 3010, Australia
| | | | - Evan J Bieske
- School of Chemistry, University of Melbourne, Melbourne, VIC 3010, Australia
| | - Mark H Stockett
- School of Chemistry, University of Melbourne, Melbourne, VIC 3010, Australia and Department of Physics, Stockholm University, Stockholm, Sweden.
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5
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Dodson LG, Zagorec-Marks W, Xu S, Smith JET, Weber JM. Intrinsic photophysics of nitrophenolate ions studied by cryogenic ion spectroscopy. Phys Chem Chem Phys 2018; 20:28535-28543. [DOI: 10.1039/c8cp06078a] [Citation(s) in RCA: 6] [Impact Index Per Article: 0.9] [Reference Citation Analysis] [Abstract] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Indexed: 11/21/2022]
Abstract
The intrinsic photophysics of nitrophenolate isomers (meta, para, and ortho) was studied at low temperature using photodissociation mass spectrometry in a cryogenic ion trap instrument.
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Affiliation(s)
| | | | - Shuang Xu
- JILA and Department of Physics
- University of Colorado
- Boulder
- USA
| | | | - J. Mathias Weber
- JILA and Department of Chemistry
- University of Colorado
- Boulder
- USA
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6
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Stockett MH, Boesen M, Houmøller J, Brøndsted Nielsen S. Accessing the Intrinsic Nature of Electronic Transitions from Gas‐Phase Spectroscopy of Molecular Ion/Zwitterion Complexes. Angew Chem Int Ed Engl 2017. [DOI: 10.1002/ange.201611320] [Citation(s) in RCA: 2] [Impact Index Per Article: 0.3] [Reference Citation Analysis] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Indexed: 11/05/2022]
Affiliation(s)
| | - Mikkel Boesen
- Department of Physics and Astronomy Aarhus University Denmark
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7
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Stockett MH, Boesen M, Houmøller J, Brøndsted Nielsen S. Accessing the Intrinsic Nature of Electronic Transitions from Gas‐Phase Spectroscopy of Molecular Ion/Zwitterion Complexes. Angew Chem Int Ed Engl 2017; 56:3490-3495. [DOI: 10.1002/anie.201611320] [Citation(s) in RCA: 17] [Impact Index Per Article: 2.1] [Reference Citation Analysis] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Received: 11/18/2016] [Indexed: 11/07/2022]
Affiliation(s)
| | - Mikkel Boesen
- Department of Physics and Astronomy Aarhus University Denmark
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8
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Stockett MH, Houmøller J, Brøndsted Nielsen S. Nile blue shows its true colors in gas-phase absorption and luminescence ion spectroscopy. J Chem Phys 2016; 145:104303. [DOI: 10.1063/1.4962364] [Citation(s) in RCA: 22] [Impact Index Per Article: 2.4] [Reference Citation Analysis] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Indexed: 11/14/2022] Open
Affiliation(s)
- M. H. Stockett
- Department of Physics and Astronomy, Aarhus University, Aarhus, Denmark
| | - J. Houmøller
- Department of Physics and Astronomy, Aarhus University, Aarhus, Denmark
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9
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Houmøller J, Wanko M, Rubio A, Nielsen SB. Effect of a Single Water Molecule on the Electronic Absorption by o- and p-Nitrophenolate: A Shift to the Red or to the Blue? J Phys Chem A 2015; 119:11498-503. [PMID: 26549521 DOI: 10.1021/acs.jpca.5b08634] [Citation(s) in RCA: 10] [Impact Index Per Article: 1.0] [Reference Citation Analysis] [Abstract] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Indexed: 02/01/2023]
Abstract
Many photoactive biomolecules are anions and exhibit ππ* optical transitions but with a degree of charge transfer (CT) character determined by the local environment. The phenolate moiety is a common structural motif among biochromophores and luminophores, and nitrophenolates are good model systems because the nitro substituent allows for CT-like transitions. Here we report gas-phase absorption spectra of o- and p-nitrophenolate·H2O complexes to decipher the effect of just one H2O and compare them with ab initio calculations of vertical excitation energies. The experimental band maximum is at 3.01 and 3.00 eV for ortho and para isomers, respectively, and is red-shifted by 0.10 and 0.13 eV relative to the bare ions, respectively. These shifts indicate that the transition has become more CT-like because of localization of negative charge on the phenolate oxygen, i.e., diminished delocalization of the negative excess charge. However, the transition bears less CT than that of m-nitrophenolate·H2O because this complex absorbs further to the red (2.56 eV). Our work emphasizes the importance of local perturbations: one water causes a larger shift than experienced in bulk for para isomer and almost the full shift for ortho isomer. Predicting microenvironmental effects in the boundary between CT and non-CT with high accuracy is nontrivial. However, in agreement with experiment, our calculations show a competition between the effects of electronic delocalization and electrostatic interaction with the solvent molecule. As a result, the excitation energy of ortho and para isomers is less sensitive to hydration than that of the meta isomer because donor and acceptor orbitals are only weakly coupled in the meta isomer.
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Affiliation(s)
- Jørgen Houmøller
- Department of Physics and Astronomy, Aarhus University , DK-8000 Aarhus C, Denmark
| | - Marius Wanko
- Nano-Bio Spectroscopy Group and ETSF, Dpto. Fisica de Materiales, Universidad del País Vasco, CFM CSIC-UPV/EHU-MPC & DIPC, 20018 San Sebastián, Spain
| | - Angel Rubio
- Nano-Bio Spectroscopy Group and ETSF, Dpto. Fisica de Materiales, Universidad del País Vasco, CFM CSIC-UPV/EHU-MPC & DIPC, 20018 San Sebastián, Spain.,Max Planck Institute for the Structure and Dynamics of Matter and Center for Free-Electron Laser Science, Luruper Chaussee 149, 22761 Hamburg, Germany
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10
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Sun XL, Zhu QY, Mu WQ, Qian LW, Yu L, Wu J, Bian GQ, Dai J. Ion pair charge-transfer thiogermanate salts [MV]2Ge4S10·xSol: solvent induced crystal transformation and photocurrent responsive properties. Dalton Trans 2014; 43:12582-9. [DOI: 10.1039/c4dt01289e] [Citation(s) in RCA: 13] [Impact Index Per Article: 1.2] [Reference Citation Analysis] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Indexed: 12/29/2022]
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11
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Nielsen SB, Nielsen MB, Rubio A. Spectroscopy of nitrophenolates in vacuo: effect of spacer, configuration, and microsolvation on the charge-transfer excitation energy. Acc Chem Res 2014; 47:1417-25. [PMID: 24673172 DOI: 10.1021/ar500025h] [Citation(s) in RCA: 18] [Impact Index Per Article: 1.6] [Reference Citation Analysis] [Abstract] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Indexed: 11/28/2022]
Abstract
In a charge-transfer (CT) transition, electron density moves from one end of the molecule (donor) to the other end (acceptor). This type of transition is of paramount importance in nature, for example, in photosynthesis, and it governs the excitation of several protein biochromophores and luminophores such as the oxyluciferin anion that accounts for light emission from fireflies. Both transition energy and oscillator strength are linked to the coupling between the donor and acceptor groups: The weaker the coupling, the smaller the excitation energy. But a weak coupling necessarily also causes a low oscillator strength possibly preventing direct excitation (basically zero probability in the noncoupling case). The coupling is determined by the actual spacer between the two groups, and whether the spacer acts as an insulator or a conductor. However, it can be difficult or even impossible to distinguish the effect of the spacer from that of local solvent molecules that often cause large solvent shifts due to different ground-state and excited-state stabilization. This calls for gas-phase spectroscopy experiments where absorption by the isolated molecule is identified to unequivocally establish the intrinsic molecular properties with no perturbations from a microenvironment. From such insight, the effect of a protein microenvironment on the CT excited state can be deduced. In this Account, we review our results over the last 5 years from mass spectroscopy experiments using specially designed apparatus on several charged donor-acceptor ions that are based on the nitrophenolate moiety and π-extended derivatives, which are textbook examples of donor-acceptor chromophores. The phenolate oxygen is the donor, and the nitro group is the acceptor. The choice of this system is also based on the fact that phenolate is a common structural motif of biochromophores and luminophores, for example, it is a constituent of the oxyluciferin anion. A presentation of the setups used for gas-phase ion spectroscopy in Aarhus is given, and we address issues of whether double bonds or triple bonds best convey electronic coupling between the phenolate oxygen and the nitro group, the significance of separating the donor and acceptor spatially, the influence of cross-conjugation versus linear conjugation, and along this line ortho versus meta versus para configuration, and not least the effect of a single solvent molecule (water, methanol, or acetonitrile). From systematic studies, a clear picture has emerged that has been supported by high-level calculations of electronically excited states. Our work shows that CC2 coupled-cluster calculations of vertical excitation energies are within 0.2 eV of experimental band maxima, and importantly, that the theoretical method is excellent in predicting the relative order of excitation energies of a series of nitrophenolates. Finally, we discuss future challenges such as following the change in absorption as a function of the number of solvent molecules and when gradually approaching the bulk limit.
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Affiliation(s)
- Steen Brøndsted Nielsen
- Department
of Physics and Astronomy, Aarhus University, Ny Munkegade 120, DK-8000 Aarhus C, Denmark
| | - Mogens Brøndsted Nielsen
- Department of Chemistry & Center for Exploitation of Solar Energy, University of Copenhagen, Universitetsparken 5, DK-2100 Copenhagen Ø, Denmark
| | - Angel Rubio
- NanoBio Spectroscopy
Group and ETSF Centre for Scientific Development, Centro Mixto CSICUPV/EHU
“Fisica de Materiales”, University of the Basque Country
UPV/EHU Centro Joxe Mari Korta, Avenida
de Tolosa, 72, E-20018 Donostia-San Sebastian, Spain
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12
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Cao W, Zheng XJ, Sun JP, Wong WT, Fang DC, Zhang JX, Jin LP. A Highly Selective Chemosensor for Al(III) and Zn(II) and Its Coordination with Metal Ions. Inorg Chem 2014; 53:3012-21. [DOI: 10.1021/ic402811x] [Citation(s) in RCA: 99] [Impact Index Per Article: 9.0] [Reference Citation Analysis] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Indexed: 01/16/2023]
Affiliation(s)
- Wei Cao
- Beijing
Key Laboratory of Energy Conversion and Storage Materials, College
of Chemistry, Beijing Normal University, Beijing 100875, People’s Republic of China
| | - Xiang-Jun Zheng
- Beijing
Key Laboratory of Energy Conversion and Storage Materials, College
of Chemistry, Beijing Normal University, Beijing 100875, People’s Republic of China
| | - Ji-Ping Sun
- Beijing
Key Laboratory of Energy Conversion and Storage Materials, College
of Chemistry, Beijing Normal University, Beijing 100875, People’s Republic of China
| | - Wing-Tak Wong
- Department of Applied Biology & Chemical Technology, The Hong Kong Polytechnic University, Hung Hom, Hong Kong Special Administrative Region, People’s Republic of China
| | - De-Cai Fang
- Beijing
Key Laboratory of Energy Conversion and Storage Materials, College
of Chemistry, Beijing Normal University, Beijing 100875, People’s Republic of China
| | - Jia-Xin Zhang
- Beijing
Key Laboratory of Energy Conversion and Storage Materials, College
of Chemistry, Beijing Normal University, Beijing 100875, People’s Republic of China
| | - Lin-Pei Jin
- Beijing
Key Laboratory of Energy Conversion and Storage Materials, College
of Chemistry, Beijing Normal University, Beijing 100875, People’s Republic of China
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13
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Christensen MA, Della Pia EA, Houmøller J, Thomsen S, Wanko M, Bond AD, Rubio A, Brøndsted Nielsen S, Brøndsted Nielsen M. Cross-Conjugation vs. Linear Conjugation in Donor-Bridge-Acceptor Nitrophenol Chromophores. European J Org Chem 2014. [DOI: 10.1002/ejoc.201301642] [Citation(s) in RCA: 7] [Impact Index Per Article: 0.6] [Reference Citation Analysis] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Indexed: 11/10/2022]
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14
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Pedersen SØ, Støchkel K, Byskov CS, Baggesen LM, Nielsen SB. Gas-phase spectroscopy of protonated adenine, adenosine 5'-monophosphate and monohydrated ions. Phys Chem Chem Phys 2013; 15:19748-52. [PMID: 24141603 DOI: 10.1039/c3cp53742k] [Citation(s) in RCA: 22] [Impact Index Per Article: 1.8] [Reference Citation Analysis] [Abstract] [Journal Information] [Subscribe] [Scholar Register] [Indexed: 01/20/2023]
Abstract
Microsolvation of chromophore ions commonly has large effects on their electronic structure and as a result on their optical absorption spectra. Here spectroscopy of protonated adenine (AdeH(+)) and its complex with one water molecule isolated in vacuo was done using a home-built mass spectrometer in combination with a tuneable pulsed laser system. Experiments also included the protonated adenosine 5'-monophosphate nucleotide (AMPH(+)). In the case of bare AdeH(+) ions, one-photon absorption leads to four dominant fragment ions corresponding to ammonium and ions formed after loss of either NH3, HCN, or NH2CN. The yields of these were measured as a function of the wavelength of the light from 210 nm to 300 nm, and they were combined to obtain the total photoinduced dissociation at each wavelength (i.e., action spectrum). A broad band between 230 nm and 290 nm and the tail of a band with maximum below 210 nm (high-energy band) are seen. In the case of AdeH(+)(H2O), the dominant dissociation channel after photoexcitation in the low-energy band was simply loss of H2O while photodissociation of protonated AMP revealed two dominant dissociation channels associated with the formation of either AdeH(+) or loss of H3PO4. The action spectra of AdeH(+), AdeH(+)(H2O), and AMPH(+) are almost identical in the 230-290 nm region, and they resemble the absorption spectrum of protonated adenine in aqueous solution recorded at low pH. Hence from our work it is firmly established that the lowest-energy transitions are independent of the surroundings.
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Affiliation(s)
- Sara Øvad Pedersen
- Department of Physics and Astronomy, Aarhus University, DK-8000 Aarhus C, Denmark.
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15
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Doria F, Gallati CM, Freccero M. Hydrosoluble and solvatochromic naphthalene diimides with NIR absorption. Org Biomol Chem 2013; 11:7838-42. [DOI: 10.1039/c3ob41771a] [Citation(s) in RCA: 17] [Impact Index Per Article: 1.4] [Reference Citation Analysis] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Indexed: 12/19/2022]
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