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Sun Q, Xu B, Du J, Yu Y, Huang Y, Deng X. Interfacial electrostatic charges promoted chemistry: Reactions and mechanisms. Adv Colloid Interface Sci 2025; 339:103436. [PMID: 39938156 DOI: 10.1016/j.cis.2025.103436] [Citation(s) in RCA: 0] [Impact Index Per Article: 0] [Reference Citation Analysis] [Abstract] [Key Words] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Received: 09/17/2024] [Revised: 12/19/2024] [Accepted: 02/05/2025] [Indexed: 02/14/2025]
Abstract
Interfacial electrostatic charges are a universal phenomenon in nature. In recent years, interest in the chemical reactivity of electrostatic charges has grown. Interfacial electrostatic charge-driven chemical synthesis reduces the reliance on redox reagents, catalysts, and hazardous solvents, which promotes environmental sustainability and cost-effectiveness in the chemical industry. Electrostatic charges can be generated at the interfaces between solids, liquids, and gases. The chemical properties of electrostatic charges have been observed at interfaces between solids and liquids, and between liquids and gases. This review summarized the chemical reactivity of interfacial electrostatic charges and its mechanisms. Electrostatic charges play a fundamental role in providing electrons and creating electric fields, which in turn induce charge transfer, radical formation, and molecular orientation. We classified the role of interfacial charges in chemical reactions and provided new perspectives. Interfacial electrostatic charges can be generated with mechanical energy input, a power supply and interface transition from solid-liquid to liquid-gas. Redox and catalytic reactions involving inorganic, organic compounds and biomolecules are driven by interfacial electrostatic charges. Electrostatic chemistry mechanisms are currently a subject of debate because there is insufficient experimental evidence. Challenges and opportunities associated with interfacial electrostatic chemistry are discussed. Knowledge of the reactivity of interfacial electrostatic charges could be used to understand electrostatic phenomena in nature, advance green chemistry, and even study the origins of life. We expect this emerging topic will appeal to scientists in disciplines including interfacial chemistry and electrostatics.
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Affiliation(s)
- Qiangqiang Sun
- Institute of Biomedical Engineering, College of Medicine, Southwest Jiaotong University, Chengdu 610031, China.
| | - Boran Xu
- Institute of Biomedical Engineering, College of Medicine, Southwest Jiaotong University, Chengdu 610031, China
| | - Jinyan Du
- Institute of Fundamental and Frontier Sciences, University of Electronic Science and Technology of China, Chengdu 610054, China
| | - Yunlong Yu
- Institute of Biomedical Engineering, College of Medicine, Southwest Jiaotong University, Chengdu 610031, China
| | - Yujie Huang
- Institute of Fundamental and Frontier Sciences, University of Electronic Science and Technology of China, Chengdu 610054, China
| | - Xu Deng
- Institute of Fundamental and Frontier Sciences, University of Electronic Science and Technology of China, Chengdu 610054, China; Shenzhen Institute for Advanced Study, University of Electronic Science and Technology of China, Shenzhen 518110, China.
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2
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Li T, Datson Z, Birvé AP, Ciampi S, Fallon T, Kosov DS, Reimers JR, Darwish N. Toward Piezoresistive Devices That Exploit Bullvalene's Structural Versatility. LANGMUIR : THE ACS JOURNAL OF SURFACES AND COLLOIDS 2025; 41:5410-5418. [PMID: 39976383 DOI: 10.1021/acs.langmuir.4c04973] [Citation(s) in RCA: 0] [Impact Index Per Article: 0] [Reference Citation Analysis] [Abstract] [Track Full Text] [Subscribe] [Scholar Register] [Indexed: 02/21/2025]
Abstract
Bullvalene is the archetypical "shape shifting" molecule, undergoing continuous Cope rearrangements in solution at room temperature at a rate of about 3 kHz. In the confined spaces of an scanning tunneling microscopy break junction (STMBJ) setup, isolated bisarylbullvalene molecules have recently been shown to exhibit very restricted isomerization and slower interconversion rates. The restricted number of populated bullvalene isomers displayed large variances in conductivity with the confinement to manifest high piezoresistivity. Herein, the confinement is increased by forming self-assembled monolayers (SAMs), focusing on measuring the resulting electron-transfer rates, as well as identifying viable SAM structural possibilities. First, bis-4-phenyl acetylene bullvalene was synthesized and its SAMs were produced on Au(111). Redox active ferrocene tail groups were then attached via a copper catalyzed azide-alkyne cycloaddition (CuAAC) to enable electrochemical measurements of SAM coverages and electron-transfer rates. The results are consistent with only a single isomeric form being present on the surface at any one time, with its nature varying with monolayer coverage density. Density functional theory (DFT) simulations indicate that a combination of steric interactions induced by the bisarylbullvalene substitution, combined with head group and SAM packing effects, results in this coverage-dependent isomeric selectivity. A small number of very different types of SAM structural possibilities are identified. These findings provide a pathway forward for the exploitation of bullvalene's constitutional isomerism in facilitating nano-electromechanical systems (NEMS).
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Affiliation(s)
- Tiexin Li
- School of Molecular and Life Sciences, Curtin University, Bentley, Western Australia 6102, Australia
| | - Zane Datson
- School of Molecular and Life Sciences, Curtin University, Bentley, Western Australia 6102, Australia
| | - André P Birvé
- School of Physics Chemistry and Earth Sciences, The University of Adelaide, Adelaide, South Australia 5005, Australia
| | - Simone Ciampi
- School of Molecular and Life Sciences, Curtin University, Bentley, Western Australia 6102, Australia
| | - Thomas Fallon
- School of Physics Chemistry and Earth Sciences, The University of Adelaide, Adelaide, South Australia 5005, Australia
| | - Daniel S Kosov
- College of Science and Engineering, James Cook University, Townsville, Queensland 4811, Australia
| | - Jeffrey R Reimers
- International Centre for Quantum and Molecular Structures and the Department of Physics, Shanghai University, Shanghai 200444, China
- School of Mathematical and Physical Sciences, University of Technology Sydney, Sydney, New South Wales 2007, Australia
| | - Nadim Darwish
- School of Molecular and Life Sciences, Curtin University, Bentley, Western Australia 6102, Australia
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3
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Swain L, Gopakumar K, Ramanan R. Unique catalytic role of intermolecular electric fields that emanate from Lewis acids in a ring closing carbonyl olefin metathesis reaction. Phys Chem Chem Phys 2025. [PMID: 40025836 DOI: 10.1039/d4cp04879b] [Citation(s) in RCA: 0] [Impact Index Per Article: 0] [Reference Citation Analysis] [Abstract] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Indexed: 03/04/2025]
Abstract
Electric field (EF) catalysis has evolved as an effective tool for controlling reactivity and selectivity of reactions. While EF catalysis brings precise control over reactivity, it also challenges the concept's practical realization due to the difficulties in juxtaposing reactants with directional EF. The present density functional theory (DFT) studies demonstrate the catalytic role of the inherent intermolecular EFs that originate from Lewis acids (LA) during a ring-closing carbonyl-olefin metathesis (RCCOM) reaction. The specificity of LA coordination to reactants generates specifically oriented intermolecular EF components along the reaction axis which is defined parallel to the direction of flow of electrons wherein the influence of the EF would be at maximum. By examining the thermal [2+2] cycloaddition and carbonyl-ene reaction steps in a RCCOM reaction as model systems, the results revealed the pivotal role of intermolecular EF in mixing some of the dormant ionic structures into normal covalent structures and facilitating a partial rotation of the nonbonding orbitals at the carbonyl oxygen to enhance an ionic pseudo-pericyclic pathway. The unique role of intermolecular EF is further verified by modelling the pristine reaction, in the absence of LAs, under oriented external EFs. The conspicuous intermolecular EF component adds to other modes of catalysis, such as conventional Lewis acidity, to result in the gross catalytic effect. The findings offer insights into the practical realization of EF catalysis by harnessing the intermolecular EFs and point out the need to include intermolecular EF as an inevitable factor for a holistic explanation of any catalytic mechanism.
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Affiliation(s)
- Lopita Swain
- Department of Chemistry, National Institute of Technology Rourkela, Odisha, 769008, India.
| | - Karthik Gopakumar
- Department of Chemistry, National Institute of Technology Rourkela, Odisha, 769008, India.
| | - Rajeev Ramanan
- Department of Chemistry, National Institute of Technology Rourkela, Odisha, 769008, India.
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4
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Zhu C, Surendran AK, D'Agostino C, Roithová J, de Visser SP. CO 2 reduction to CO on an iron-porphyrin complex with crown-ether appended cation-binding site. Dalton Trans 2025. [PMID: 39996367 PMCID: PMC11851269 DOI: 10.1039/d5dt00119f] [Citation(s) in RCA: 0] [Impact Index Per Article: 0] [Reference Citation Analysis] [Abstract] [Grants] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Received: 01/15/2025] [Accepted: 02/18/2025] [Indexed: 02/26/2025]
Abstract
With increasing carbon dioxide concentrations in the atmosphere, the utilization and conversion of CO2 into valuable materials is an important goal. In recent years, evidence has emerged of low-valent iron-porphyrin complexes able to bind CO2 and reduce it to carbon monoxide and water. To find out how the porphyrin scaffold and second coordination sphere influence the CO2 reduction on iron-porphyrin complexes, we study the structure, electronic and redox properties of a novel crown-ether appended porphyrin complex with cation (K+) binding site. Cyclic voltammetry studies show that the K+ binding site does not change the Fe0/I and FeI/II redox potentials of the complexes. Subsequently, density functional theory calculations were performed on the catalytic cycle of CO2 reduction on the K+-bound crown-ether appended iron-porphyrin complex. The work shows that proton-donors such as acetic acid bind the K+ strongly and can assist with efficient and fast proton transfer that leads to the conversion of CO2 to CO and water. In agreement with experiment, the calculations show little perturbations of the redox potentials upon binding K+ to the crown-ether scaffold.
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Affiliation(s)
- Chengxu Zhu
- Manchester Institute of Biotechnology, The University of Manchester, 131 Princess Street, Manchester M1 7DN, UK.
- Department of Chemical Engineering, The University of Manchester, Oxford Road, Manchester M13 9PL, UK
| | - Adarsh Koovakattil Surendran
- Department of Spectroscopy and Catalysis, Institute for Molecules and Materials, Radboud University, Heyendaalseweg 135, 6525 AJ Nijmegen, The Netherlands.
| | - Carmine D'Agostino
- Department of Chemical Engineering, The University of Manchester, Oxford Road, Manchester M13 9PL, UK
- Dipartimento di Ingegneria Civile, Chimica, Ambientale e dei Materiali (DICAM), Alma Mater Studiorum - Università di Bologna, Via Terracini, 28, 40131 Bologna, Italy
| | - Jana Roithová
- Department of Spectroscopy and Catalysis, Institute for Molecules and Materials, Radboud University, Heyendaalseweg 135, 6525 AJ Nijmegen, The Netherlands.
| | - Sam P de Visser
- Manchester Institute of Biotechnology, The University of Manchester, 131 Princess Street, Manchester M1 7DN, UK.
- Department of Chemical Engineering, The University of Manchester, Oxford Road, Manchester M13 9PL, UK
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5
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Chen MW, Ren X, Song X, Qian N, Ma Y, Yu W, Yang L, Min W, Zare RN, Dai Y. Transition-State-Dependent Spontaneous Generation of Reactive Oxygen Species by Aβ Assemblies Encodes a Self-Regulated Positive Feedback Loop for Aggregate Formation. J Am Chem Soc 2025. [PMID: 39999421 DOI: 10.1021/jacs.4c15532] [Citation(s) in RCA: 0] [Impact Index Per Article: 0] [Reference Citation Analysis] [Abstract] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Indexed: 02/27/2025]
Abstract
Amyloid-β (Aβ) peptides exhibit distinct biological activities across multiple physical length scales, including monomers, oligomers, and fibrils. The transition from Aβ monomers to pathological aggregates correlates with the emergence of chemical toxicity, which plays a critical role in the progression of neurodegenerative disorders. However, the relationship between the physical state of Aβ assemblies and their chemical toxicity remains poorly understood. Here, we show that Aβ assemblies can spontaneously generate reactive oxygen species (ROS) through transition-state-specific inherent nonenzymatic redox activity. During the transition from initial monomers to intermediate oligomers or condensates to final fibrils, interfacial electrochemical environments emerge and vary at the liquid-liquid and liquid-solid interfaces. Determined by the vibrational Stark effect using electronic pre-resonance stimulated Raman scattering microscopy, the interfacial field of such assemblies is on the order of 10 MV/cm. Interfacial activity, which depends on the Aβ transition state, can modulate the spontaneous oxidation of hydroxide anions, which leads to the formation of hydroxyl radicals. Interestingly, this redox activity modifies the chemical composition of Aβ and establishes a self-regulated positive feedback loop that accelerates aggregation and promotes fibril formation, which represents a new functioning mechanism of Aβ aggregation beyond physical cross-linking. Leveraging this mechanistic insight, we identified small molecules capable of disrupting the feedback loop by scavenging hydroxyl radicals or perturbing the interface, thereby inhibiting fibril formation. Our findings provide a nonenzymatic model of neurotoxicity and reveal the critical role of physical interfaces in modulating the chemical dynamics of biomolecular assemblies. These results offer a novel framework for therapeutic intervention in Alzheimer's disease and related neurodegenerative disorders.
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Affiliation(s)
- Michael W Chen
- Department of Biomedical Engineering and Center for Biomolecular Condensates, Washington University in St. Louis, Saint Louis, Missouri 63130, United States
| | - Xiaokang Ren
- Department of Biomedical Engineering and Center for Biomolecular Condensates, Washington University in St. Louis, Saint Louis, Missouri 63130, United States
| | - Xiaowei Song
- Department of Chemistry, Stanford University, Stanford, California 94305, United States
| | - Naixin Qian
- Department of Chemistry, Columbia University, New York, New York 10027, United States
| | - Yuefeng Ma
- Department of Biomedical Engineering and Center for Biomolecular Condensates, Washington University in St. Louis, Saint Louis, Missouri 63130, United States
| | - Wen Yu
- Department of Biomedical Engineering and Center for Biomolecular Condensates, Washington University in St. Louis, Saint Louis, Missouri 63130, United States
| | - Leshan Yang
- Department of Biomedical Engineering and Center for Biomolecular Condensates, Washington University in St. Louis, Saint Louis, Missouri 63130, United States
| | - Wei Min
- Department of Chemistry, Columbia University, New York, New York 10027, United States
| | - Richard N Zare
- Department of Chemistry, Stanford University, Stanford, California 94305, United States
| | - Yifan Dai
- Department of Biomedical Engineering and Center for Biomolecular Condensates, Washington University in St. Louis, Saint Louis, Missouri 63130, United States
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6
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Eberhart ME, Alexandrova AN, Ajmera P, Bím D, Chaturvedi SS, Vargas S, Wilson TR. Methods for Theoretical Treatment of Local Fields in Proteins and Enzymes. Chem Rev 2025. [PMID: 39993955 DOI: 10.1021/acs.chemrev.4c00471] [Citation(s) in RCA: 0] [Impact Index Per Article: 0] [Reference Citation Analysis] [Abstract] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Indexed: 02/26/2025]
Abstract
Electric fields generated by protein scaffolds are crucial in enzymatic catalysis. This review surveys theoretical approaches for detecting, analyzing, and comparing electric fields, electrostatic potentials, and their effects on the charge density within enzyme active sites. Pioneering methods like the empirical valence bond approach rely on evaluating ionic and covalent resonance forms influenced by the field. Strategies employing polarizable force fields also facilitate field detection. The vibrational Stark effect connects computational simulations to experimental Stark spectroscopy, enabling direct comparisons. We highlight how protein dynamics induce fluctuations in local fields, influencing enzyme activity. Recent techniques assess electric fields throughout the active site volume rather than only at specific bonds, and machine learning helps relate these global fields to reactivity. Quantum theory of atoms in molecules captures the entire electron density landscape, providing a chemically intuitive perspective on field-driven catalysis. Overall, these methodologies show protein-generated fields are highly dynamic and heterogeneous, and understanding both aspects is critical for elucidating enzyme mechanisms. This holistic view empowers rational enzyme engineering by tuning electric fields, promising new avenues in drug design, biocatalysis, and industrial applications. Future directions include incorporating electric fields as explicit design targets to enhance catalytic performance and biochemical functionalities.
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Affiliation(s)
- Mark E Eberhart
- Chemistry Department, Colorado School of Mines, 1500 Illinois Street, Golden, Colorado 80401, United States
| | - Anastassia N Alexandrova
- Department of Chemistry, and Biochemistry, University of California, Los Angeles, Los Angeles, California 90095, United States
| | - Pujan Ajmera
- Department of Chemistry, and Biochemistry, University of California, Los Angeles, Los Angeles, California 90095, United States
| | - Daniel Bím
- Department of Physical Chemistry, University of Chemistry and Technology, Prague 166 28, Czech Republic
| | - Shobhit S Chaturvedi
- Department of Chemistry, and Biochemistry, University of California, Los Angeles, Los Angeles, California 90095, United States
| | - Santiago Vargas
- Department of Chemistry, and Biochemistry, University of California, Los Angeles, Los Angeles, California 90095, United States
| | - Timothy R Wilson
- Chemistry Department, Colorado School of Mines, 1500 Illinois Street, Golden, Colorado 80401, United States
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7
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Yang J, Sun Y, Shi H, Zou H, Zhang Y, Tian X, Yang H. Small Ligand-Involved Pickering Droplet Interface Controls Reaction Selectivity of Metal Catalysts. J Am Chem Soc 2025; 147:5984-5995. [PMID: 39913329 DOI: 10.1021/jacs.4c16128] [Citation(s) in RCA: 0] [Impact Index Per Article: 0] [Reference Citation Analysis] [Abstract] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Indexed: 02/20/2025]
Abstract
Developing efficient methods to improve catalytic selectivity, particularly without sacrificing catalytic activity, is of paramount significance for chemical synthesis. In this work, we report a small ligand-involved Pickering droplet interface as a brand-new strategy to effectively regulate reaction selectivity of metal catalysts. It was found that small ligands such as polar arenes could engineer the surface structure of Pt catalysts that were assembled at Pickering droplet interfaces. Due to the strong hydrogen-bonding interactions with water, the polar arenes preferentially adsorbed with the water adlayer that covered Pt surfaces, forming water-mediated metal-organic interfaces on the Pickering emulsion droplets. Such an interface system displayed a significantly enhanced p-vinylaniline selectivity from 8.7 to 94.2% with an unreduced conversion in p-nitrostyrene hydrogenation. The selectivity was found to follow a negatively linear correlation with the bond length of the interfacial hydrogen bonds. Theoretical calculations revealed that the small arene ligands could closely array at the interface, which modulated the adsorption patterns of reactant/product molecules to prevent the C═C group from approaching Pt surfaces without suppressing their accessibility toward reactant molecules. Such a remarkable interfacial steric effect contributed to the efficient control of the hydrogenation selectivity. Our work provides an innovative strategy to modulate the surface structure of metal catalysts, opening a new venue to tune catalytic selectivity.
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Affiliation(s)
- Jie Yang
- Shanxi Key Laboratory for the Green Catalysis Synthesis of Coal-based Value-added Chemicals, School of Chemistry and Chemical Engineering, Shanxi University, Taiyuan 030006, China
| | - Yue Sun
- Shanxi Key Laboratory for the Green Catalysis Synthesis of Coal-based Value-added Chemicals, School of Chemistry and Chemical Engineering, Shanxi University, Taiyuan 030006, China
| | - Hu Shi
- Shanxi Key Laboratory for the Green Catalysis Synthesis of Coal-based Value-added Chemicals, School of Chemistry and Chemical Engineering, Shanxi University, Taiyuan 030006, China
| | - Houbing Zou
- Shanxi Key Laboratory for the Green Catalysis Synthesis of Coal-based Value-added Chemicals, School of Chemistry and Chemical Engineering, Shanxi University, Taiyuan 030006, China
- Engineering Research Center of the Ministry of Education for Fine Chemicals, Shanxi University, Taiyuan 030006, China
| | - Yabin Zhang
- School of Environment and Resources, Shanxi University, Taiyuan 030006, China
| | - Xinxin Tian
- Institute of Molecular Science, Key Laboratory of Chemical Biology and Molecular Engineering of Ministry of Education, Shanxi University, Taiyuan 030006, China
| | - Hengquan Yang
- Shanxi Key Laboratory for the Green Catalysis Synthesis of Coal-based Value-added Chemicals, School of Chemistry and Chemical Engineering, Shanxi University, Taiyuan 030006, China
- Engineering Research Center of the Ministry of Education for Fine Chemicals, Shanxi University, Taiyuan 030006, China
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8
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Shiels OJ, Brydon SC, Poad BLJ, Marshall DL, Houston SD, Xing H, Bernhardt PV, Savage GP, Williams CM, Harman DG, Kirk BB, da Silva G, Blanksby SJ, Trevitt AJ. Electrostatically tuning radical addition and atom abstraction reactions with distonic radical ions. Chem Sci 2025; 16:2861-2878. [PMID: 39822901 PMCID: PMC11733627 DOI: 10.1039/d4sc06333c] [Citation(s) in RCA: 0] [Impact Index Per Article: 0] [Reference Citation Analysis] [Abstract] [Grants] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Received: 09/19/2024] [Accepted: 01/02/2025] [Indexed: 01/19/2025] Open
Abstract
Although electrostatic catalysis can enhance the kinetics and selectivity of reactions to produce greener synthetic processes, the highly directional nature of electrostatic interactions has limited widespread application. In this study, the influence of oriented electric fields (OEF) on radical addition and atom abstraction reactions are systematically explored with ion-trap mass spectrometry using structurally diverse distonic radical ions that maintain spatially separated charge and radical moieties. When installed on rigid molecular scaffolds, charged functional groups lock the magnitude and orientation of the internal electric field with respect to the radical site, creating an OEF which tunes the reactivity across the set of gas-phase carbon-centred radical reactions. In the first case, OEFs predictably accelerate and decelerate the rate of molecular oxygen addition to substituted phenyl, adamantyl, and cubyl radicals, depending on the polarity of the charged functional group and dipole orientation. In the second case, OEFs modulate competition between chlorine and hydrogen atom abstraction from chloroform based on interactions between charge polarity, dipole orientation, and radical polarizability. Importantly, this means the same charge polarity can induce different changes to reaction selectivity. Quantum chemical calculations of these reactions with DSD-PBEP86-D3(BJ)/aug-cc-pVTZ show correlations between the barrier heights and the experimentally determined reaction kinetics. Field effects are consistent between phenyl and cubyl scaffolds, pointing to through-space rather than through-bond field effects, congruent with computations showing that the same effects can be mimicked by point charges. These results experimentally demonstrate how internal OEFs generated by carefully placed charged functional groups can systematically control radical reactions.
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Affiliation(s)
- Oisin J Shiels
- Molecular Horizons and School of Chemistry and Molecular Bioscience, University of Wollongong Wollongong New South Wales 2522 Australia
| | - Samuel C Brydon
- Central Analytical Research Facility and School of Chemistry and Physics, Queensland University of Technology Brisbane Queensland 4001 Australia
| | - Berwyck L J Poad
- Central Analytical Research Facility and School of Chemistry and Physics, Queensland University of Technology Brisbane Queensland 4001 Australia
| | - David L Marshall
- Central Analytical Research Facility and School of Chemistry and Physics, Queensland University of Technology Brisbane Queensland 4001 Australia
| | - Sevan D Houston
- School of Chemistry and Molecular Biosciences, University of Queensland Brisbane 4072 Queensland Australia
| | - Hui Xing
- School of Chemistry and Molecular Biosciences, University of Queensland Brisbane 4072 Queensland Australia
| | - Paul V Bernhardt
- School of Chemistry and Molecular Biosciences, University of Queensland Brisbane 4072 Queensland Australia
| | - G Paul Savage
- CSIRO Manufacturing, Ian Wark Laboratory Melbourne 3168 Victoria Australia
| | - Craig M Williams
- School of Chemistry and Molecular Biosciences, University of Queensland Brisbane 4072 Queensland Australia
| | - David G Harman
- School of Medicine, Western Sydney University Penrith New South Wales 2751 Australia
| | | | - Gabriel da Silva
- Department of Chemical Engineering, The University of Melbourne Parkville Victoria 3010 Australia
| | - Stephen J Blanksby
- Central Analytical Research Facility and School of Chemistry and Physics, Queensland University of Technology Brisbane Queensland 4001 Australia
| | - Adam J Trevitt
- Molecular Horizons and School of Chemistry and Molecular Bioscience, University of Wollongong Wollongong New South Wales 2522 Australia
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9
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Guo Y, Yang C, Zhang L, Hu Y, Hao J, Jia C, Yang Y, Xu Y, Li X, Mo F, Li Y, Houk KN, Guo X. Full on-device manipulation of olefin metathesis for precise manufacturing. NATURE NANOTECHNOLOGY 2025; 20:246-254. [PMID: 39516385 DOI: 10.1038/s41565-024-01814-y] [Citation(s) in RCA: 0] [Impact Index Per Article: 0] [Reference Citation Analysis] [Abstract] [Grants] [Track Full Text] [Subscribe] [Scholar Register] [Received: 05/25/2024] [Accepted: 09/26/2024] [Indexed: 11/16/2024]
Abstract
Olefin metathesis, as a powerful metal-catalysed carbon-carbon bond-forming method, has achieved considerable progress in recent years. However, the complexity originating from multicomponent interactions has long impeded a complete mechanistic understanding of olefin metathesis, which hampers further optimization of the reaction. Here, we clarify both productive and hidden degenerate pathways of ring-closing metathesis by focusing on one individual catalyst, using a sensitive single-molecule electrical detection platform. In addition to visualizing the full pathway, we found that the conventionally unwanted degenerate pathways have an unexpected constructive coupling effect on the productive pathway, and both types of pathway can be regulated by an external electric field. We then pushed forward this ability to ring-opening metathesis polymerization involving more interactive components. With single-monomer-insertion-event resolution, precise on-device synthesis of a single polymer was achieved by online manipulation of monomer insertion dynamics, intramolecular chain transfer, stereoregularity, degree of polymerization and block copolymerization. These results offer a comprehensive mechanistic understanding of olefin metathesis, exemplifying infinite opportunities for practical precise manufacturing.
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Affiliation(s)
- Yilin Guo
- Beijing National Laboratory for Molecular Sciences, National Biomedical Imaging Centre, College of Chemistry and Molecular Engineering, Peking University, Beijing, People's Republic of China
| | - Chen Yang
- Beijing National Laboratory for Molecular Sciences, National Biomedical Imaging Centre, College of Chemistry and Molecular Engineering, Peking University, Beijing, People's Republic of China
| | - Lei Zhang
- Beijing National Laboratory for Molecular Sciences, National Biomedical Imaging Centre, College of Chemistry and Molecular Engineering, Peking University, Beijing, People's Republic of China
| | - Yujie Hu
- Department of Chemical Physics, University of Science and Technology of China, Hefei, People's Republic of China
| | - Jie Hao
- Centre of Single-Molecule Sciences, Institute of Modern Optics, Frontiers Science Centre for New Organic Matter, College of Electronic Information and Optical Engineering, Nankai University, Tianjin, People's Republic of China
| | - Chuancheng Jia
- Centre of Single-Molecule Sciences, Institute of Modern Optics, Frontiers Science Centre for New Organic Matter, College of Electronic Information and Optical Engineering, Nankai University, Tianjin, People's Republic of China
| | - Yang Yang
- Department of Chemistry and Biochemistry, University of California, Santa Barbara, CA, USA
| | - Yan Xu
- Beijing National Laboratory for Molecular Sciences, National Biomedical Imaging Centre, College of Chemistry and Molecular Engineering, Peking University, Beijing, People's Republic of China
| | - Xingxing Li
- Department of Chemical Physics, University of Science and Technology of China, Hefei, People's Republic of China
| | - Fanyang Mo
- School of Materials Science and Engineering, Peking University, Beijing, People's Republic of China.
| | - Yanwei Li
- Environment Research Institute, Shandong University, Qingdao, People's Republic of China.
| | - Kendall N Houk
- Department of Chemistry and Biochemistry, University of California, Los Angeles, Los Angeles, CA, USA.
| | - Xuefeng Guo
- Beijing National Laboratory for Molecular Sciences, National Biomedical Imaging Centre, College of Chemistry and Molecular Engineering, Peking University, Beijing, People's Republic of China.
- Centre of Single-Molecule Sciences, Institute of Modern Optics, Frontiers Science Centre for New Organic Matter, College of Electronic Information and Optical Engineering, Nankai University, Tianjin, People's Republic of China.
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10
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Yang L, Liu Y, Ge Q, Wang J, Wang R, You W, Wang W, Wang T, Zhang L. Atmospheric Hydroxyl Radical Route Revealed: Interface-Mediated Effects of Mineral-Bearing Microdroplet Aerosol. J Am Chem Soc 2025; 147:3371-3382. [PMID: 39824145 DOI: 10.1021/jacs.4c14149] [Citation(s) in RCA: 0] [Impact Index Per Article: 0] [Reference Citation Analysis] [Abstract] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Indexed: 01/20/2025]
Abstract
Hydroxyl radical (·OH) plays a crucial role in atmospheric chemistry, regulating the oxidative potential and aerosol composition. This study reveals an unprecedented source of ·OH in the atmosphere: mineral dust-bearing microdroplet aerosols. We demonstrate that Kaolin clay particles in microdroplet aerosols trigger rapid ·OH production upon solar irradiation, with rates reaching an order of at least 10-3 M s-1. This production rate is several orders of magnitude higher than that of the bulk phase (2.4 × 10-11 M s-1) and previously known pathways. On this basis, the surface-based interfacial ·OH production rate is estimated to be 8.9 × 10-5 mol m-2 s-1 at the air-water-solid interface of 1 μm sized aerosol particles. The enhanced ·OH formation is attributed to the unique features of air-water-solid interfaces, where the lifespan of photoinduced holes was significantly increased due to the presence of strong electric fields at the air-water interface. We further investigated the impacts of various environmental factors and aerosol properties on ·OH production, including light intensity, relative humidity, particle size, and pH. Our findings provide new insights into atmospheric photochemical processes mediated by mineral dust-bearing microdroplet aerosols, which are important contributors to ·OH source in the atmosphere. This work advances our understanding of atmospheric interfacial chemistry and its profound and lasting implications for air quality and climate.
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Affiliation(s)
- Le Yang
- Shanghai Key Laboratory of Atmospheric Particle Pollution and Prevention, National Observations and Research Station for Wetland Ecosystems of the Yangtze Estuary, IRDR International Center of Excellence on Risk Interconnectivity and Governance on Weather, Department of Environmental Science & Engineering, Fudan University, Shanghai 200433, Peoples' Republic of China
| | - Yangyang Liu
- Shanghai Key Laboratory of Atmospheric Particle Pollution and Prevention, National Observations and Research Station for Wetland Ecosystems of the Yangtze Estuary, IRDR International Center of Excellence on Risk Interconnectivity and Governance on Weather, Department of Environmental Science & Engineering, Fudan University, Shanghai 200433, Peoples' Republic of China
| | - Qiuyue Ge
- Shanghai Key Laboratory of Atmospheric Particle Pollution and Prevention, National Observations and Research Station for Wetland Ecosystems of the Yangtze Estuary, IRDR International Center of Excellence on Risk Interconnectivity and Governance on Weather, Department of Environmental Science & Engineering, Fudan University, Shanghai 200433, Peoples' Republic of China
| | - Jilun Wang
- Shanghai Key Laboratory of Atmospheric Particle Pollution and Prevention, National Observations and Research Station for Wetland Ecosystems of the Yangtze Estuary, IRDR International Center of Excellence on Risk Interconnectivity and Governance on Weather, Department of Environmental Science & Engineering, Fudan University, Shanghai 200433, Peoples' Republic of China
| | - Runbo Wang
- Shanghai Key Laboratory of Atmospheric Particle Pollution and Prevention, National Observations and Research Station for Wetland Ecosystems of the Yangtze Estuary, IRDR International Center of Excellence on Risk Interconnectivity and Governance on Weather, Department of Environmental Science & Engineering, Fudan University, Shanghai 200433, Peoples' Republic of China
| | - Wenbo You
- Shanghai Key Laboratory of Atmospheric Particle Pollution and Prevention, National Observations and Research Station for Wetland Ecosystems of the Yangtze Estuary, IRDR International Center of Excellence on Risk Interconnectivity and Governance on Weather, Department of Environmental Science & Engineering, Fudan University, Shanghai 200433, Peoples' Republic of China
| | - Wei Wang
- Shanghai Key Laboratory of Atmospheric Particle Pollution and Prevention, National Observations and Research Station for Wetland Ecosystems of the Yangtze Estuary, IRDR International Center of Excellence on Risk Interconnectivity and Governance on Weather, Department of Environmental Science & Engineering, Fudan University, Shanghai 200433, Peoples' Republic of China
| | - Tao Wang
- Shanghai Key Laboratory of Atmospheric Particle Pollution and Prevention, National Observations and Research Station for Wetland Ecosystems of the Yangtze Estuary, IRDR International Center of Excellence on Risk Interconnectivity and Governance on Weather, Department of Environmental Science & Engineering, Fudan University, Shanghai 200433, Peoples' Republic of China
| | - Liwu Zhang
- Shanghai Key Laboratory of Atmospheric Particle Pollution and Prevention, National Observations and Research Station for Wetland Ecosystems of the Yangtze Estuary, IRDR International Center of Excellence on Risk Interconnectivity and Governance on Weather, Department of Environmental Science & Engineering, Fudan University, Shanghai 200433, Peoples' Republic of China
- Shanghai Institute of Pollution Control and Ecological Security, Shanghai 200092, Peoples' Republic of China
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11
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Zhang Y, Guan X, Meng Z, Jiang HL. Supramolecularly Built Local Electric Field Microenvironment around Cobalt Phthalocyanine in Covalent Organic Frameworks for Enhanced Photocatalysis. J Am Chem Soc 2025; 147:3776-3785. [PMID: 39817693 DOI: 10.1021/jacs.4c16538] [Citation(s) in RCA: 0] [Impact Index Per Article: 0] [Reference Citation Analysis] [Abstract] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Indexed: 01/18/2025]
Abstract
The local electric field (LEF) plays an important role in the catalytic process; however, the precise construction and manipulation of the electric field microenvironment around the active site remains a significant challenge. Here, we have developed a supramolecular strategy for the implementation of a LEF by introducing the host macrocycle 18-crown-6 (18C6) into a cobalt phthalocyanine (CoPc)-containing covalent organic framework (COF). Utilizing the supramolecular interaction between 18C6 and potassium ion (K+), a locally enhanced K+ concentration around CoPc can be built to generate a LEF microenvironment around the catalytically active Co site. The COF with this supramolecularly built LEF realizes an activity of up to 7.79 mmol mmolCo-1 h-1 in the photocatalytic CO2 reduction reaction (CO2RR), which is a 180% improvement compared to its counterpart without 18C6 units. The effect of LEF can be subtly controlled by fully harnessing the K+@18C6 interaction by changing the potassium salts with different counterions. In situ spectroscopy and density functional theory calculations show that the complexation of K+ by 18C6 creates a positive electric field that stabilizes the critical intermediate *COOH involved in CO2RR, which can be tuned by the halide ion-mediated K+@18C6 interaction and hydrogen-bonding interaction, consequently leading to improved catalytic performance to varying degrees.
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Affiliation(s)
- Yi Zhang
- Key Laboratory of Precision and Intelligent Chemistry, Department of Chemistry, University of Science and Technology of China, Hefei, Anhui 230026, P. R. China
| | - Xinyu Guan
- Hefei National Research Center for Physical Sciences at the Microscale, Department of Chemistry, University of Science and Technology of China, Hefei, Anhui 230026, P. R. China
- Hangzhou Institute of Advanced Studies, Zhejiang Normal University, Hangzhou, Zhejiang 310000, P. R. China
| | - Zheng Meng
- Key Laboratory of Precision and Intelligent Chemistry, Department of Chemistry, University of Science and Technology of China, Hefei, Anhui 230026, P. R. China
| | - Hai-Long Jiang
- Hefei National Research Center for Physical Sciences at the Microscale, Department of Chemistry, University of Science and Technology of China, Hefei, Anhui 230026, P. R. China
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12
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Kalita S, Danovich D, Shaik S. Origins of the Superiority of Oscillating Electric Fields for Disrupting Senile Plaques: Insights from the 7-Residue Fragment and the Full-length Aβ-42 Peptide. J Am Chem Soc 2025; 147:2626-2641. [PMID: 39772489 PMCID: PMC11760182 DOI: 10.1021/jacs.4c14791] [Citation(s) in RCA: 0] [Impact Index Per Article: 0] [Reference Citation Analysis] [Abstract] [MESH Headings] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Received: 10/22/2024] [Revised: 12/01/2024] [Accepted: 12/30/2024] [Indexed: 01/11/2025]
Abstract
Our recent molecular dynamics simulations of decomposing Alzheimer's disease plaques, under oscillating- and static external electric fields (Os-EEFs and St-EEFs), revealed the superiority of Os-EEF for decomposing plaques consisting of the 7-residue peptide segment. This conclusion is now reinforced by studying the dimers of the short peptides and trimers of the full-length Aβ-42 peptide. Thus, the dispersed peptides obtained following St-EEF applications reformed the plaques once the St-EEF subsided. In contrast, plaques originating from the application of Os-EEF remained dispersed for long time scales. The present study provides insights into these results by modeling the decomposition modes that transpire under both field types. Additionally, this study provides insights into the frequency effects on the decomposition processes within the THz-MHz regions. The simulation shows that the Os-EEF in the lower frequency range (≤GHz) decomposes the plaque on a time scale of ∼50 ns, whereas the higher frequency Os-EEFs (≥THz) are less effective. As such, Os-EEFs with moderate-to-low frequencies (≤GHz) lead to an "explosion," whereby the peptides fly distantly apart and inhibit plaque reformation. By contrast, St-EEFs form parallel peptide pairs, which are stabilized by the EEF due to the large dipole moment of the ensemble. Thus, St-EEF applications lead to sluggish and reversible plaque decomposition processes. We further conclude that the Os-EEF impact is maximal for short pulses, which prevents the EEF propensity to arrange the peptides in parallel pairs. The superiority of the Os-EEF over the St-EEF is maintained irrespective of the peptides' length. A model is formulated that predicts the dependence of the decomposition time scale on the EEF.
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Affiliation(s)
- Surajit Kalita
- Institute of Chemistry, The Hebrew University of Jerusalem, Edmond J. Safra Campus, Givat Ram, Jerusalem 9190401, Israel
| | - David Danovich
- Institute of Chemistry, The Hebrew University of Jerusalem, Edmond J. Safra Campus, Givat Ram, Jerusalem 9190401, Israel
| | - Sason Shaik
- Institute of Chemistry, The Hebrew University of Jerusalem, Edmond J. Safra Campus, Givat Ram, Jerusalem 9190401, Israel
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13
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Wang R, Li Y, Yan S, Zhang Z, Lian C, Tian H, Li H. Reversible Isomerization of Stiff-Stilbene by an Oriented External Electric Field. J Am Chem Soc 2025; 147:2841-2848. [PMID: 39797786 DOI: 10.1021/jacs.4c16530] [Citation(s) in RCA: 0] [Impact Index Per Article: 0] [Reference Citation Analysis] [Abstract] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Indexed: 01/13/2025]
Abstract
Understanding and effectively controlling molecular conformational changes are essential for developing responsive and dynamic molecular systems. Here, we report that an oriented external electric field (OEEF) is an effective catalyst for the cis-trans isomerization of stiff-stilbene, a key component of overcrowded alkene-based rotary motors. This reversible isomerization occurs under ambient conditions, is free from side reactions, and has been verified using ultraperformance liquid chromatography and UV-vis absorption spectroscopy. Low electric field promotes cis-to-trans conversion, and high electric field enables the reverse trans-to-cis process, demonstrating the precise reaction control through electric field manipulation. Density functional theory calculations reveal the mechanism of the electric-field-catalyzed cis-trans carbon-carbon double bond isomerization. Our findings provide a novel perspective on constructing OEEF-catalyzed, reversible molecular systems and pave the way for fully electrically driven artificial molecular machines.
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Affiliation(s)
- Rui Wang
- Key Laboratory for Advanced Materials, Feringa Nobel Prize Scientist Joint Research Center, Frontiers Science Center for Materiobiology and Dynamic Chemistry, Institute of Fine Chemicals, School of Chemistry and Molecular Engineering, East China University of Science and Technology, Shanghai 200237, P. R. China
| | - Yingjie Li
- Key Laboratory for Advanced Materials, Feringa Nobel Prize Scientist Joint Research Center, Frontiers Science Center for Materiobiology and Dynamic Chemistry, Institute of Fine Chemicals, School of Chemistry and Molecular Engineering, East China University of Science and Technology, Shanghai 200237, P. R. China
| | - Siyu Yan
- Key Laboratory for Advanced Materials, Feringa Nobel Prize Scientist Joint Research Center, Frontiers Science Center for Materiobiology and Dynamic Chemistry, Institute of Fine Chemicals, School of Chemistry and Molecular Engineering, East China University of Science and Technology, Shanghai 200237, P. R. China
| | - Zekai Zhang
- Key Laboratory for Advanced Materials, Feringa Nobel Prize Scientist Joint Research Center, Frontiers Science Center for Materiobiology and Dynamic Chemistry, Institute of Fine Chemicals, School of Chemistry and Molecular Engineering, East China University of Science and Technology, Shanghai 200237, P. R. China
| | - Cheng Lian
- Key Laboratory for Advanced Materials, Feringa Nobel Prize Scientist Joint Research Center, Frontiers Science Center for Materiobiology and Dynamic Chemistry, Institute of Fine Chemicals, School of Chemistry and Molecular Engineering, East China University of Science and Technology, Shanghai 200237, P. R. China
| | - He Tian
- Key Laboratory for Advanced Materials, Feringa Nobel Prize Scientist Joint Research Center, Frontiers Science Center for Materiobiology and Dynamic Chemistry, Institute of Fine Chemicals, School of Chemistry and Molecular Engineering, East China University of Science and Technology, Shanghai 200237, P. R. China
| | - Hongxiang Li
- Key Laboratory for Advanced Materials, Feringa Nobel Prize Scientist Joint Research Center, Frontiers Science Center for Materiobiology and Dynamic Chemistry, Institute of Fine Chemicals, School of Chemistry and Molecular Engineering, East China University of Science and Technology, Shanghai 200237, P. R. China
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14
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Jozeliūnaitė A, Guo S, Sakai N, Matile S. Electric-Field Catalysis on Carbon Nanotubes in Electromicrofluidic Reactors: Monoterpene Cyclizations. Angew Chem Int Ed Engl 2025; 64:e202417333. [PMID: 39387156 PMCID: PMC11753599 DOI: 10.1002/anie.202417333] [Citation(s) in RCA: 0] [Impact Index Per Article: 0] [Reference Citation Analysis] [Abstract] [Key Words] [Grants] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Received: 09/09/2024] [Revised: 10/06/2024] [Accepted: 10/09/2024] [Indexed: 10/12/2024]
Abstract
The control over the movement of electrons during chemical reactions with oriented external electric fields (OEEFs) has been predicted to offer a general approach to catalysis. Recently, we suggested that many problems to realize electric-field catalysis in practice under scalable bulk conditions could possibly be solved on multiwalled carbon nanotubes in electromicrofluidic reactors. Here, we selected monoterpene cyclizations to assess the scope of our system in organic synthesis. We report that electric-field catalysis can function by stabilizing both anionic and cationic transition states, depending on the orientation of the applied field. Moreover, electric-field catalysis can promote reactions which are barely accessible by general Brønsted and Lewis acids and field-free anion-π and cation-π interactions, and drive chemoselectivity toward intrinsically disfavored products without the need for pyrene interfacers attached to the substrate to prolong binding to the carbon nanotubes. Finally, interfacing with chiral organocatalysts is explored and evidence against contributions from redox chemistry is provided.
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Affiliation(s)
- Augustina Jozeliūnaitė
- Department of Organic ChemistryUniversity of GenevaGenevaSwitzerland
- National Centre of Competence in Research (NCCR) Molecular Systems EngineeringBPR1095BaselSwitzerland
| | - Shen‐Yi Guo
- Department of Organic ChemistryUniversity of GenevaGenevaSwitzerland
- National Centre of Competence in Research (NCCR) Molecular Systems EngineeringBPR1095BaselSwitzerland
| | - Naomi Sakai
- Department of Organic ChemistryUniversity of GenevaGenevaSwitzerland
- National Centre of Competence in Research (NCCR) Molecular Systems EngineeringBPR1095BaselSwitzerland
| | - Stefan Matile
- Department of Organic ChemistryUniversity of GenevaGenevaSwitzerland
- National Centre of Competence in Research (NCCR) Molecular Systems EngineeringBPR1095BaselSwitzerland
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15
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Yang C, Guo Y, Zhang H, Guo X. Utilization of Electric Fields to Modulate Molecular Activities on the Nanoscale: From Physical Properties to Chemical Reactions. Chem Rev 2025; 125:223-293. [PMID: 39621876 DOI: 10.1021/acs.chemrev.4c00327] [Citation(s) in RCA: 0] [Impact Index Per Article: 0] [Reference Citation Analysis] [Abstract] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Indexed: 01/11/2025]
Abstract
As a primary energy source, electricity drives broad fields from everyday electronic circuits to industrial chemical catalysis. From a chemistry viewpoint, studying electric field effects on chemical reactivity is highly important for revealing the intrinsic mechanisms of molecular behaviors and mastering chemical reactions. Recently, manipulating the molecular activity using electric fields has emerged as a new research field. In addition, because integration of molecules into electronic devices has the natural complementary metal-oxide-semiconductor compatibility, electric field-driven molecular devices meet the requirements for both electronic device miniaturization and precise regulation of chemical reactions. This Review provides a timely and comprehensive overview of recent state-of-the-art advances, including theoretical models and prototype devices for electric field-based manipulation of molecular activities. First, we summarize the main approaches to providing electric fields for molecules. Then, we introduce several methods to measure their strengths in different systems quantitatively. Subsequently, we provide detailed discussions of electric field-regulated photophysics, electron transport, molecular movements, and chemical reactions. This review intends to provide a technical manual for precise molecular control in devices via electric fields. This could lead to development of new optoelectronic functions, more efficient logic processing units, more precise bond-selective control, new catalytic paradigms, and new chemical reactions.
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Affiliation(s)
- Chen Yang
- Beijing National Laboratory for Molecular Sciences, National Biomedical Imaging Center, College of Chemistry and Molecular Engineering, Peking University, 292 Chengfu Road, Haidian District, Beijing 100871, P. R. China
| | - Yilin Guo
- Beijing National Laboratory for Molecular Sciences, National Biomedical Imaging Center, College of Chemistry and Molecular Engineering, Peking University, 292 Chengfu Road, Haidian District, Beijing 100871, P. R. China
| | - Heng Zhang
- Beijing National Laboratory for Molecular Sciences, National Biomedical Imaging Center, College of Chemistry and Molecular Engineering, Peking University, 292 Chengfu Road, Haidian District, Beijing 100871, P. R. China
| | - Xuefeng Guo
- Beijing National Laboratory for Molecular Sciences, National Biomedical Imaging Center, College of Chemistry and Molecular Engineering, Peking University, 292 Chengfu Road, Haidian District, Beijing 100871, P. R. China
- Center of Single-Molecule Sciences, College of Electronic Information and Optical Engineering, Nankai University, 38 Tongyan Road, Jinnan District, Tianjin 300350, P. R. China
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16
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Sreelakshmi PA, Mahashaya R, Leitherer S, Rashid U, Hamill JM, Nair M, Rajamalli P, Kaliginedi V. Electric Field-Induced Sequential Prototropic Tautomerism in Enzyme-like Nanopocket Created by Single Molecular Break Junction. J Am Chem Soc 2024; 146:35242-35251. [PMID: 39496492 DOI: 10.1021/jacs.4c12423] [Citation(s) in RCA: 0] [Impact Index Per Article: 0] [Reference Citation Analysis] [Abstract] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Indexed: 11/06/2024]
Abstract
Mastering the control of external stimuli-induced chemical transformations with detailed insights into the mechanistic pathway is the key for developing efficient synthetic strategies and designing functional molecular systems. Enzymes, the most potent biological catalysts, efficiently utilize their built-in electric field to catalyze and control complex chemical reactions within the active site. Herein, we have demonstrated the interfacial electric field-induced prototropic tautomerization reaction in acylhydrazone entities by creating an enzymatic-like nanopocket within the atomically sharp gold electrodes using a mechanically controlled break junction (MCBJ) technique. In addition to that, the molecular system used here contains two coupled acylhydrazone reaction centers, hence demonstrating a cooperative stepwise electric field-induced reaction realized at the single molecular level. Furthermore, the mechanistic studies revealed a proton relay-assisted tautomerization showing the importance of external factors such as solvent in such electric field-driven reactions. Finally, single-molecule charge transport and energetics calculations of different molecular species at various applied electric fields using a polarizable continuum solvent model confirm and support our experimental findings. Thus, this study demonstrates that mimicking an enzymatic pocket using a single molecular junction's interfacial electric field as a trigger for chemical reactions can open new avenues to the field of synthetic chemistry.
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Affiliation(s)
- P A Sreelakshmi
- Department of Inorganic and Physical Chemistry, Indian Institute of Science, Bangalore 560012, India
| | - Rahul Mahashaya
- Materials Research Centre, Indian Institute of Science, Bangalore 560012, India
| | - Susanne Leitherer
- Department of Chemistry and Nano-Science Center, University of Copenhagen, Universitetsparken 5, DK- 2100 Copenhagen Ø, Denmark
| | - Umar Rashid
- Department of Inorganic and Physical Chemistry, Indian Institute of Science, Bangalore 560012, India
| | - Joseph M Hamill
- Department of Chemistry and Nano-Science Center, University of Copenhagen, Universitetsparken 5, DK- 2100 Copenhagen Ø, Denmark
| | - Manivarna Nair
- Department of Inorganic and Physical Chemistry, Indian Institute of Science, Bangalore 560012, India
| | | | - Veerabhadrarao Kaliginedi
- Department of Inorganic and Physical Chemistry, Indian Institute of Science, Bangalore 560012, India
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17
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Thomas M, Jaber Sathik Rifayee SB, Christov CZ. How Do Variants of Residues in the First Coordination Sphere, Second Coordination Sphere, and Remote Areas Influence the Catalytic Mechanism of Non-Heme Fe(II)/2-Oxoglutarate Dependent Ethylene-Forming Enzyme? ACS Catal 2024; 14:18550-18569. [PMID: 39722885 PMCID: PMC11668244 DOI: 10.1021/acscatal.4c04010] [Citation(s) in RCA: 0] [Impact Index Per Article: 0] [Reference Citation Analysis] [Abstract] [Key Words] [Grants] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Received: 07/05/2024] [Revised: 11/22/2024] [Accepted: 11/25/2024] [Indexed: 12/28/2024]
Abstract
The ethylene-forming enzyme (EFE) is a Fe(II)/2-oxoglutarate (2OG) and l-arginine (l-Arg)-dependent oxygenase that primarily decomposes 2OG into ethylene while also catalyzing l-Arg hydroxylation. While the hydroxylation mechanism in EFE is similar to other Fe(II)/2OG-dependent oxygenases, the formation of ethylene is unique. Various redesign strategies have aimed to increase ethylene production in EFE, but success has been limited, highlighting the need for alternate approaches. It is crucial to incorporate an accurate and comprehensive description of the integrative and multidimensional effects of the protein environment to enhance the redesign strategy in metalloenzymes, particularly in EFE. This involves understanding the role of the second coordination sphere (SCS) and long-range (LR) interacting residues, correlated motions, electronic structure, intrinsic electric field (IntEF), as well as the stabilization of transition states and reaction intermediates. In this study, we employ a molecular dynamics-based quantum mechanics/molecular mechanics approach to examine the integrative effects of the protein environment on reactions catalyzed by EFE variants from the first coordination sphere (FCS, D191E), SCS (A198V and R171A) and LR (E215A). The study uncovers how substitutions at different positions in EFE similarly impact the ethylene-forming reaction while posing distinct effects on the hydroxylation reaction. Results predict the effect of the variants in controlling the 2OG coordination mode in the Fe(II) center. Specifically, the study suggests that D191E uniquely prefers transitioning from an off-line to an in-line 2OG coordination mode before dioxygen binding. However, studies on the 2OG flip in the presence of off-line approaching dioxygen and dioxygen binding in the D191E variant indicate that the 2OG flip might not be feasible in the 5C Fe(II) state. Calculations show the possibility of a hydrogen atom transfer (HAT)-assisted oxygen flip in EFE and its variants (other than D191E). MD simulations elucidate the characteristic dynamic change in the α7 region in the D191E variant that might contribute to its increased hydroxylation reaction. Results indicate the possibility of forming an in-line ferryl from the IM2 (Fe(III)-partial bond intermediate) in the D191E variant. This alternative pathway from IM2 may also exist in WT EFE and other variants, which are yet to be explored. The study also delineates the impact of substitutions on the electronic structure and IntEF. Overall, the calculations support the idea that understanding the integrative and multidimensional effects of the protein environment on the reactions catalyzed by EFE variants provides the basics for improved enzyme redesign protocols of EFE to increase ethylene production. The results of this study will also contribute to the development of alternate redesign strategies for other metalloenzymes.
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Affiliation(s)
- Midhun
George Thomas
- Department of Chemistry, Michigan Technological University, Houghton, Michigan 49931, United States
| | | | - Christo Z. Christov
- Department of Chemistry, Michigan Technological University, Houghton, Michigan 49931, United States
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18
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Cui CX, Shen Y, He JR, Fu Y, Hong X, Wang S, Jiang J, Luo Y. Quantitative Insight into the Electric Field Effect on CO 2 Electrocatalysis via Machine Learning Spectroscopy. J Am Chem Soc 2024; 146:34551-34559. [PMID: 39648633 DOI: 10.1021/jacs.4c12174] [Citation(s) in RCA: 0] [Impact Index Per Article: 0] [Reference Citation Analysis] [Abstract] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Indexed: 12/10/2024]
Abstract
During chemical reactions, especially for electrocatalysis and electrosynthesis, the electric field is the most central driving force to regulate the reaction process. However, due to the difficulty of quantitatively measuring the electric field effects caused at the microscopic level, the regulation of electrocatalytic reactions by electric fields has not been well digitally understood yet. Herein, we took the infrared/Raman spectral signals of CO2 molecules as descriptors to quantitatively predict the effects of different electric fields on the catalytic properties. Taking the metal-doped graphitic C3N4 (g-C3N4) catalyst as an example, we theoretically investigated the adsorption mode and energy of CO2 molecules adsorbed on 27 distinct metal single-atom catalysts under different directions and intensities of electric field. Through a machine learning approach, a spectroscopy-property model between infrared/Raman spectral descriptors and adsorption energy/charge transfer was established, which quantified the facilitation of electric field effects on the CO2 catalytic conversion. Meanwhile, based on the attention mechanism, the catalytic insight of the relationship between spectra and adsorption modes was mined, and the inverse prediction of electric field strength from spectra was realized. This work opens a new quantitative pathway for monitoring and regulating electrocatalytic reactions using machine learning spectroscopy.
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Affiliation(s)
- Cheng-Xing Cui
- School of Chemistry and Chemical Engineering, Institute of Computational Chemistry, Henan Institute of Science and Technology, Xinxiang, Henan 453003, P. R. China
- Institute of Intelligent Innovation, Henan Academy of Sciences, Zhengzhou, Henan 451162, P. R. China
| | - Yixi Shen
- Key Laboratory of Precision and Intelligent Chemistry, School of Chemistry and Materials Science, University of Science and Technology of China, Hefei, Anhui 230026, P. R. China
| | - Jun-Ru He
- School of Chemistry and Chemical Engineering, Institute of Computational Chemistry, Henan Institute of Science and Technology, Xinxiang, Henan 453003, P. R. China
| | - Yao Fu
- Hefei National Research Center for Physical Sciences at the Microscale, University of Science and Technology of China, Hefei, Anhui 230026, P. R. China
- CAS Key Laboratory of Urban Pollutant Conversion, Anhui Province Key Laboratory of Biomass Clean Energy, Department of Applied Chemistry, University of Science and Technology of China, Hefei, Anhui 230026, P. R. China
- Hefei National Laboratory, University of Science and Technology of China, Hefei, Anhui 230088, P. R. China
| | - Xin Hong
- Center of Chemistry for Frontier Technologies, Department of Chemistry, State Key Laboratory of Clean Energy Utilization, Zhejiang University, Hangzhou, Zhejiang 310027, P. R. China
| | - Song Wang
- Key Laboratory of Precision and Intelligent Chemistry, School of Chemistry and Materials Science, University of Science and Technology of China, Hefei, Anhui 230026, P. R. China
| | - Jun Jiang
- Institute of Intelligent Innovation, Henan Academy of Sciences, Zhengzhou, Henan 451162, P. R. China
- Key Laboratory of Precision and Intelligent Chemistry, School of Chemistry and Materials Science, University of Science and Technology of China, Hefei, Anhui 230026, P. R. China
- Hefei National Laboratory, University of Science and Technology of China, Hefei, Anhui 230088, P. R. China
| | - Yi Luo
- Hefei National Research Center for Physical Sciences at the Microscale, University of Science and Technology of China, Hefei, Anhui 230026, P. R. China
- Hefei National Laboratory, University of Science and Technology of China, Hefei, Anhui 230088, P. R. China
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19
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Cao Y, Wong HPH, Warwicker J, Hay S, de Visser SP. What is the Origin of the Regioselective C 3-Hydroxylation of L-Arg by the Nonheme Iron Enzyme Capreomycin C? Chemistry 2024; 30:e202402604. [PMID: 39190221 DOI: 10.1002/chem.202402604] [Citation(s) in RCA: 0] [Impact Index Per Article: 0] [Reference Citation Analysis] [Abstract] [Key Words] [MESH Headings] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Received: 07/09/2024] [Revised: 08/26/2024] [Accepted: 08/27/2024] [Indexed: 08/28/2024]
Abstract
The nonheme iron dioxygenase capreomycin C (CmnC) hydroxylates a free L-arginine amino acid regio- and stereospecifically at the C3-position as part of the capreomycin antibiotics biosynthesis. Little is known on its structure, catalytic cycle and substrate specificity and, therefore, a comprehensive computational study was performed. A large QM cluster model of CmnC was created of 297 atoms and the mechanisms for C3-H, C4-H and C5-H hydroxylation and C3-C4 desaturation were investigated. All low-energy pathways correspond to radical reaction mechanisms with an initial hydrogen atom abstraction followed by OH rebound to form alcohol product complexes. The work is compared to alternative L-Arg hydroxylating nonheme iron dioxygenases and the differences in active site polarity are compared. We show that a tight hydrogen bonding network in the substrate binding pocket positions the substrate in an ideal orientation for C3-H activation, whereby the polar groups in the substrate binding pocket induce an electric field effect that guides the selectivity.
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Affiliation(s)
- Yuanxin Cao
- Manchester Institute of Biotechnology, The University of Manchester, 131 Princess Street, Manchester, M1 7DN, United Kingdom
- Department of Chemistry, The University of Manchester, Oxford Road, Manchester, M13 9PL, United Kingdom
| | - Henrik P H Wong
- Manchester Institute of Biotechnology, The University of Manchester, 131 Princess Street, Manchester, M1 7DN, United Kingdom
- Department of Chemical Engineering, The University of Manchester, Oxford Road, Manchester, M13 9PL, United Kingdom
| | - Jim Warwicker
- Manchester Institute of Biotechnology, The University of Manchester, 131 Princess Street, Manchester, M1 7DN, United Kingdom
- School of Biological Sciences, Faculty of Biology, Medicine and Health, The University of Manchester, Oxford Road, Manchester, M13 9PL, United Kingdom
| | - Sam Hay
- Manchester Institute of Biotechnology, The University of Manchester, 131 Princess Street, Manchester, M1 7DN, United Kingdom
- Department of Chemistry, The University of Manchester, Oxford Road, Manchester, M13 9PL, United Kingdom
| | - Sam P de Visser
- Manchester Institute of Biotechnology, The University of Manchester, 131 Princess Street, Manchester, M1 7DN, United Kingdom
- Department of Chemical Engineering, The University of Manchester, Oxford Road, Manchester, M13 9PL, United Kingdom
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20
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Scheele T, Neudecker T. On the Interplay Between Force, Temperature, and Electric Fields in the Rupture Process of Mechanophores. Chemphyschem 2024; 25:e202400648. [PMID: 39044653 DOI: 10.1002/cphc.202400648] [Citation(s) in RCA: 0] [Impact Index Per Article: 0] [Reference Citation Analysis] [Abstract] [Key Words] [Grants] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Received: 06/18/2024] [Revised: 07/23/2024] [Accepted: 07/23/2024] [Indexed: 07/25/2024]
Abstract
The use of oriented external electric fields (OEEFs) shows promise as an alternative approach to chemical catalysis. The ability to target a specific bond by aligning it with a bond-weakening electric field may be beneficial in mechanochemical reactions, which use mechanical force to selectively rupture bonds. Previous computational studies have focused on a static description of molecules in OEEFs, neglecting to test the influence of thermal oscillations on molecular stability. Here, we performed ab initio molecular dynamics (AIMD) simulations based on density functional theory (DFT) to investigate the behaviour of a model mechanophore under the simultaneous influence of thermal and electric field effects. We show that the change in bond length caused by a strong electric field is largely independent of the temperature, both without and with mechanical stretching forces applied to the molecule. The amplitude of thermal oscillations increases with increasing field strength and temperature, but at low temperatures, the application of mechanical force leads to an additional increase in amplitude. Our research shows that methods for applying mechanical force and OEEFs can be safely combined and included in an AIMD simulation at both low and high temperatures, allowing researchers to computationally investigate mechanochemical reactions in realistic application scenarios.
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Affiliation(s)
- Tarek Scheele
- University of Bremen, Institute for Physical and Theoretical Chemistry, Leobener Straße 6, D-28359, Bremen, Germany
| | - Tim Neudecker
- University of Bremen, Institute for Physical and Theoretical Chemistry, Leobener Straße 6, D-28359, Bremen, Germany
- University of Bremen, Bremen Center for Computational Materials Science, Am Fallturm 1, D-28359, Bremen, Germany
- University of Bremen, MAPEX Center for Materials and Processes, Bibliothekstraße 1, D-28359, Bremen, Germany
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21
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Cheng Y, Zhu S, Ma H, Zhang S, Wei K, Wu S, Tang Y, Liu P, Luo T, Liu G, Yang R. Multimodal Locomotion and Dynamic Interaction of Hydrogel Microdisks at the Air-Water Interface under Magnetic and Light Stimuli. ACS APPLIED MATERIALS & INTERFACES 2024; 16:61633-61644. [PMID: 39498969 DOI: 10.1021/acsami.4c12151] [Citation(s) in RCA: 0] [Impact Index Per Article: 0] [Reference Citation Analysis] [Abstract] [Key Words] [Track Full Text] [Subscribe] [Scholar Register] [Indexed: 11/07/2024]
Abstract
The potential applications of hydrogel microrobots in biomedicine and environmental exploration have sparked significant interest in understanding their behavior under multiphysical fields. This study explores the multimodal locomotion and dynamic interaction of hydrogel microrobots at the air-water interface under magnetic and light stimuli. A pair of hydrogel microrobots at the air-water interface exhibits a transition from cooperative, combined rotation to interactive behavior, involving both rotation and revolution under the influence of a rotating magnetic field (RMF), and a shift from attraction to separation under near-infrared (NIR) light, demonstrating the dynamic modulation of their behaviors in response to different stimuli. Notably, the behavioral patterns of multiple hydrogel microrobots under multiphysical fields indicate that NIR light can enhance interactive motion behaviors under RMFs and extend the range of motion trajectories. Dynamic models for each condition are established and analyzed based on dynamic equilibrium, and their behavior can be modulated by parameters such as magnetic particle concentration, magnetic field frequency, and NIR light intensity. This work introduces a novel strategy for regulating and controlling the dynamic behaviors of hydrogel microrobots, offering new insights into their multiphysical field locomotion.
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Affiliation(s)
- Yifan Cheng
- School of Biomedical Engineering, 3D-Printing and Tissue Engineering Center, Anhui Medical University, Hefei 230032, China
| | - Shilu Zhu
- School of Biomedical Engineering, Division of Life Sciences and Medicine, University of Science and Technology of China, Hefei, Anhui 230026, China
- Suzhou Institute for Advanced Research, University of Science and Technology of China, Suzhou, Jiangsu 215123, China
| | - Hui Ma
- School of Biomedical Engineering, 3D-Printing and Tissue Engineering Center, Anhui Medical University, Hefei 230032, China
| | - Shengting Zhang
- The First Clinical College, Anhui Medical University, Hefei, Anhui 230026, China
| | - Kun Wei
- School of Biomedical Engineering, 3D-Printing and Tissue Engineering Center, Anhui Medical University, Hefei 230032, China
| | - Shiyu Wu
- School of Biomedical Engineering, 3D-Printing and Tissue Engineering Center, Anhui Medical University, Hefei 230032, China
| | - Yongkang Tang
- The First Clinical College, Anhui Medical University, Hefei, Anhui 230026, China
| | - Ping Liu
- School of Microelectronics, Hefei University of Technology, Hefei 230009, China
| | - Tingting Luo
- School of Biomedical Engineering, 3D-Printing and Tissue Engineering Center, Anhui Medical University, Hefei 230032, China
| | - Guangli Liu
- School of Biomedical Engineering, 3D-Printing and Tissue Engineering Center, Anhui Medical University, Hefei 230032, China
| | - Runhuai Yang
- School of Biomedical Engineering, 3D-Printing and Tissue Engineering Center, Anhui Medical University, Hefei 230032, China
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22
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Ma D, Li J, Cao Z. CH 4 Carbonylation to Acetic Acid Using H 2O as an Oxidant on a Rh-Functionalized UiO-67 Combined with Oriented External Electric Fields: Selectivity and Mechanistic Insights from DFT Calculations. Inorg Chem 2024; 63:21110-21120. [PMID: 39444298 DOI: 10.1021/acs.inorgchem.4c03309] [Citation(s) in RCA: 0] [Impact Index Per Article: 0] [Reference Citation Analysis] [Abstract] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Indexed: 10/25/2024]
Abstract
Acetic acid (CH3COOH), as an industrially important petrochemical product, is predominantly produced via multistep energy-intensive processes. The development of a rhodium single-site heterogeneous catalyst has received considerable attention due to its potential to transform CH4 into CH3COOH in a single step. Herein, the reaction mechanism for the generation of CH3COOH from CH4, CO, and H2O catalyzed by Rh-functionalized metal-organic framework (MOF) UiO-67 and the selectivity of products CH3COOH, formic acid (HCOOH), methanol (CH3OH), and acetaldehyde (CH3CHO) under the oriented external electric fields (OEEFs) were systematically explored by density functional theory (DFT) calculations. The results reveal that the insertion of CO into Rh-CH3 is the rate-determining step with a free energy barrier of 21.0 kcal/mol in CH4 carbonylation to CH3COOH. Upon applying an OEEF of Fx = +0.0050 au along the C-C bond, the rate-determining step shifts toward H2O decomposition with the barrier of 19.6 kcal/mol, significantly improving the selectivity for CH3COOH production, compared to the major competitive HCOOH route. The Brønsted-Evans-Polanyi (BEP) relationships between key transition states, field strength, and NPA charge transfer were established. This study may guide the rational design of atomically dispersed MOF catalysts for the selective coconversion of CH4 and CO to CH3COOH using H2O as the oxidant under the OEEF.
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Affiliation(s)
- Denghui Ma
- School of New Energy, Ningbo University of Technology, Ningbo 315336, P. R. China
- State Key Laboratory of Physical Chemistry of Solid Surfaces and Fujian Provincial Key Laboratory of Theoretical and Computational Chemistry, College of Chemistry and Chemical Engineering, Xiamen University, Xiamen 360015, P. R. China
| | - Jianming Li
- School of New Energy, Ningbo University of Technology, Ningbo 315336, P. R. China
| | - Zexing Cao
- State Key Laboratory of Physical Chemistry of Solid Surfaces and Fujian Provincial Key Laboratory of Theoretical and Computational Chemistry, College of Chemistry and Chemical Engineering, Xiamen University, Xiamen 360015, P. R. China
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23
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Linker TM, Dagar R, Feinberg A, Sahel-Schackis S, Nomura KI, Nakano A, Shimojo F, Vashishta P, Bergmann U, Kling MF, Summers AM. Catalysis in Extreme Field Environments: A Case Study of Strongly Ionized SiO 2 Nanoparticle Surfaces. J Am Chem Soc 2024; 146:27563-27570. [PMID: 39327984 PMCID: PMC11467989 DOI: 10.1021/jacs.4c08550] [Citation(s) in RCA: 0] [Impact Index Per Article: 0] [Reference Citation Analysis] [Abstract] [Grants] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Received: 06/24/2024] [Revised: 09/16/2024] [Accepted: 09/17/2024] [Indexed: 09/28/2024]
Abstract
High electric fields can significantly alter catalytic environments and the resultant chemical processes. Such fields arise naturally in biological systems but can also be artificially induced through localized nanoscale excitations. Recently, strong field excitation of dielectric nanoparticles has emerged as an avenue for studying catalysis in highly ionized environments, producing extreme electric fields. While the dynamics of laser-driven surface ion emission has been extensively explored, understanding the molecular dynamics leading to fragmentation has remained elusive. Here, we employ a multiscale approach performing nonadiabatic quantum molecular dynamics (NAQMD) simulations on hydrogenated silica surfaces in both bare and wetted environments under field conditions mimicking those of an ionized nanoparticle. Our findings indicate that hole localization drives fragmentation dynamics, leading to surface silanol dissociation within 50 fs and charge transfer-induced water splitting in wetted environments within 150 fs. Further insight into such ultrafast mechanisms is critical for the advancement of catalysis on the surface of charged nanosystems.
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Affiliation(s)
- Thomas M. Linker
- Stanford
PULSE Institute, SLAC National Accelerator
Laboratory, Menlo
Park, California 94025, United States
- Department
of Physics, University of Wisconsin−Madison, Madison, Wisconsin 53706, United States
| | - Ritika Dagar
- Department
of Physics, Ludwig-Maximilians-Universität
Munich, D-85748 Garching, Germany
| | - Alexandra Feinberg
- Stanford
PULSE Institute, SLAC National Accelerator
Laboratory, Menlo
Park, California 94025, United States
| | - Samuel Sahel-Schackis
- Stanford
PULSE Institute, SLAC National Accelerator
Laboratory, Menlo
Park, California 94025, United States
| | - Ken-ichi Nomura
- Collaboratory
for Advanced Computing and Simulations, University of Southern California, Los Angeles, California 90089-0242, United States
| | - Aiichiro Nakano
- Collaboratory
for Advanced Computing and Simulations, University of Southern California, Los Angeles, California 90089-0242, United States
| | - Fuyuki Shimojo
- Department
of Physics, Kumamoto University, Kumamoto 860-8555, Japan
| | - Priya Vashishta
- Collaboratory
for Advanced Computing and Simulations, University of Southern California, Los Angeles, California 90089-0242, United States
| | - Uwe Bergmann
- Department
of Physics, University of Wisconsin−Madison, Madison, Wisconsin 53706, United States
| | - Matthias F. Kling
- Stanford
PULSE Institute, SLAC National Accelerator
Laboratory, Menlo
Park, California 94025, United States
- SLAC National
Accelerator Laboratory, Menlo Park, California 94025, United States
| | - Adam M. Summers
- Stanford
PULSE Institute, SLAC National Accelerator
Laboratory, Menlo
Park, California 94025, United States
- SLAC National
Accelerator Laboratory, Menlo Park, California 94025, United States
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24
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Fu X, Diao W, Luo Y, Liu Y, Wang Z. Theoretical Insight into the Fluorescence Spectral Tuning Mechanism: A Case Study of Flavin-Dependent Bacterial Luciferase. J Chem Theory Comput 2024; 20:8652-8664. [PMID: 39298275 DOI: 10.1021/acs.jctc.4c00950] [Citation(s) in RCA: 0] [Impact Index Per Article: 0] [Reference Citation Analysis] [Abstract] [MESH Headings] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Indexed: 09/21/2024]
Abstract
Bioluminescence of bacteria is widely applied in biological imaging, environmental toxicant detection, and many other situations. Understanding the spectral tuning mechanism not only helps explain the diversity of colors observed in nature but also provides principles for bioengineering new color variants for practical applications. In this study, time-dependent density functional theory (TD-DFT) and quantum mechanics and molecular mechanics (QM/MM) calculations have been employed to understand the fluorescence spectral tuning mechanism of bacterial luciferase with a focus on the electrostatic effect. The spectrum can be tuned by both a homogeneous dielectric environment and oriented external electric fields (OEEFs). Increasing the solvent polarity leads to a redshift of the fluorescence emission maximum, λF, accompanied by a substantial increase in density. In contrast, applying an OEEF along the long axis of the isoalloxazine ring (X-axis) leads to a significant red- or blue-shift in λF, depending on the direction of the OEEF, yet with much smaller changes in intensity. The effect of polar solvents is directionless, and the red-shifts can be attributed to the larger dipole moment of the S1 state compared with that of the S0 state. However, the effect of OEEFs directly correlates with the difference dipole moment between the S1 and S0 states, which is directional and is determined by the charge redistribution upon deexcitation. Moreover, the electrostatic effect of bacterial luciferase is in line with the presence of an internal electric field (IEF) pointing in the negative X direction. Finally, the key residues that contribute to this IEF and strategies for modulating the spectrum through site-directed point mutations are discussed.
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Affiliation(s)
- Xiaodi Fu
- Center for Advanced Materials Research, Beijing Normal University, Zhuhai 519087, China
| | - Wenwen Diao
- Oujiang Laboratory (Zhejiang Lab for Regenerative Medicine, Vision and Brain Health), Wenzhou 325000, China
| | - Yanling Luo
- School of Chinese Materia Medica, Tianjin University of Traditional Chinese Medicine, Tianjin 301617, China
| | - Yajun Liu
- Center for Advanced Materials Research, Beijing Normal University, Zhuhai 519087, China
- Key Laboratory of Theoretical and Computational Photochemistry, Ministry of Education, College of Chemistry, Beijing Normal University, Beijing 100875, China
| | - Zhanfeng Wang
- Center for Advanced Materials Research, Beijing Normal University, Zhuhai 519087, China
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25
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Vargas S, Chaturvedi SS, Alexandrova AN. Machine-Learning Prediction of Protein Function from the Portrait of Its Intramolecular Electric Field. J Am Chem Soc 2024. [PMID: 39374428 DOI: 10.1021/jacs.4c09549] [Citation(s) in RCA: 0] [Impact Index Per Article: 0] [Reference Citation Analysis] [Abstract] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Indexed: 10/09/2024]
Abstract
We introduce a machine learning framework designed to predict enzyme functionality directly from the heterogeneous electric fields inherent to protein active sites. We apply this method to a curated data set of heme-iron oxidoreductases, spanning three enzyme classes: monooxygenases, peroxidases, and catalases. Conventional analysis, focused on simplistic, point electric fields along the Fe-O bond, is shown to be inadequate for accurate activity prediction. Our model demonstrates that the enzyme's heterogeneous 3-D electric field, alone, can accurately predict its function, without relying on additional protein-specific information. Through feature selection, we uncover key electric field components that not only validate previous studies but also underscore the crucial role of multiple components beyond the traditionally emphasized electric field along the Fe-O bond in heme enzymes. Furthermore, by integrating protein dynamics, principal component analysis, clustering, and QM/MM calculations, we reveal that while dynamic complexities in protein structures can obscure predictions, the model still retains its accuracy. This research significantly advances our understanding of how protein scaffolds possess signature electric fields tailored to their functions at the active site. Moreover, it presents a novel electrostatics-based tool to harness these signature electric fields for predicting enzyme function.
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Affiliation(s)
- Santiago Vargas
- Department of Chemistry and Biochemistry, University of California, Los Angeles, California 90095, United States
| | - Shobhit S Chaturvedi
- Department of Chemistry and Biochemistry, University of California, Los Angeles, California 90095, United States
| | - Anastassia N Alexandrova
- Department of Chemistry and Biochemistry, University of California, Los Angeles, California 90095, United States
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26
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Dong X, Wang Z, Hou Y, Feng Y, Berbille A, Li H, Wang ZL, Tang W. Regulating Contact-Electro-Catalysis Using Polymer/Metal Janus Composite Catalysts. J Am Chem Soc 2024. [PMID: 39353155 DOI: 10.1021/jacs.4c07446] [Citation(s) in RCA: 0] [Impact Index Per Article: 0] [Reference Citation Analysis] [Abstract] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Indexed: 10/04/2024]
Abstract
Interfacial contact electrification can catalyze redox reactions through a process called contact-electro-catalysis (CEC). The two main reaction paths for producing reactive oxygen species via CEC are the water oxidation reaction (WOR) and the oxygen reduction reaction (ORR). Herein, we designed a polymer/metal Janus composite catalyst that regulated the reaction rates of the WOR and ORR based on the catalyst composition. The ORR was preferentially enhanced when the polymer was negatively charged during contact electrification, while the WOR was preferentially enhanced when the polymer was positively charged. This phenomenon was observed for various conductive materials. The increase in the enhancement of the reaction rates depended on the conductivity and work function of the metal. We expect that this efficient CEC method can form a universal strategy for improving the performance of existing catalysts, as contact electrification is common in nature.
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Affiliation(s)
- Xuanli Dong
- Center for High-Entropy Energy and Systems, Beijing Institute of Nanoenergy and Nanosystems, Chinese Academy of Sciences, Beijing 100140, P. R. China
- School of Nanoscience and Engineering, University of Chinese Academy of Sciences, Beijing 100049, China
| | - Ziming Wang
- Center for High-Entropy Energy and Systems, Beijing Institute of Nanoenergy and Nanosystems, Chinese Academy of Sciences, Beijing 100140, P. R. China
- School of Nanoscience and Engineering, University of Chinese Academy of Sciences, Beijing 100049, China
| | - Yu Hou
- Center for High-Entropy Energy and Systems, Beijing Institute of Nanoenergy and Nanosystems, Chinese Academy of Sciences, Beijing 100140, P. R. China
- School of Nanoscience and Engineering, University of Chinese Academy of Sciences, Beijing 100049, China
| | - Yawei Feng
- Department of Mechanical Engineering, City University of Hong Kong, Hong Kong 999077, P. R. China
| | - Andy Berbille
- Center for High-Entropy Energy and Systems, Beijing Institute of Nanoenergy and Nanosystems, Chinese Academy of Sciences, Beijing 100140, P. R. China
- School of Nanoscience and Engineering, University of Chinese Academy of Sciences, Beijing 100049, China
| | - Huifan Li
- Center for High-Entropy Energy and Systems, Beijing Institute of Nanoenergy and Nanosystems, Chinese Academy of Sciences, Beijing 100140, P. R. China
- Center on Nanoenergy Research, School of Physical Science and Technology, Guangxi University, Nanning 530004, China
| | - Zhong Lin Wang
- Center for High-Entropy Energy and Systems, Beijing Institute of Nanoenergy and Nanosystems, Chinese Academy of Sciences, Beijing 100140, P. R. China
- School of Nanoscience and Engineering, University of Chinese Academy of Sciences, Beijing 100049, China
| | - Wei Tang
- Center for High-Entropy Energy and Systems, Beijing Institute of Nanoenergy and Nanosystems, Chinese Academy of Sciences, Beijing 100140, P. R. China
- School of Nanoscience and Engineering, University of Chinese Academy of Sciences, Beijing 100049, China
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27
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Kundu S, Berkelbach TC. Reaction Rate Theory for Electric Field Catalysis in Solution. J Am Chem Soc 2024; 146:26041-26047. [PMID: 39236158 DOI: 10.1021/jacs.4c05877] [Citation(s) in RCA: 0] [Impact Index Per Article: 0] [Reference Citation Analysis] [Abstract] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Indexed: 09/07/2024]
Abstract
The application of an external, oriented electric field has emerged as an attractive technique for manipulating chemical reactions. Because most applications occur in solution, a theory of electric field catalysis requires treatment of the solvent, whose interaction with both the external field and the reacting species modifies the reaction energetics and thus the reaction rate. Here, we formulate such a transition state theory using a dielectric continuum model, and we incorporate dynamical effects due to solvent motion via Grote-Hynes corrections. We apply our theory to the Menshutkin reaction between CH3I and pyridine, which is catalyzed by polar solvents, and to the symmetric SN2 reaction of F- with CH3F, which is inhibited by polar solvents. At low applied field strengths when the solvent responds linearly, our theory predicts near-complete quenching of electric field catalysis. However, a qualitative treatment of the nonlinear response (i.e., dielectric saturation) shows that catalysis can be recovered at appreciable field strengths as solvent molecules begin to align with the applied field direction. The dynamical correction to the rate constant is seen to vary nonmonotonically with increasing solvent polarity due to contrasting effects of the screening ability and the longitudinal relaxation time of the solvent.
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Affiliation(s)
- Sohang Kundu
- Department of Chemistry, Columbia University, New York, New York 10027, United States
| | - Timothy C Berkelbach
- Department of Chemistry, Columbia University, New York, New York 10027, United States
- Initiative for Computational Catalysis, Flatiron Institute, New York, New York 10010, United States
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28
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Joll K, Schienbein P, Rosso KM, Blumberger J. Machine learning the electric field response of condensed phase systems using perturbed neural network potentials. Nat Commun 2024; 15:8192. [PMID: 39294144 PMCID: PMC11411082 DOI: 10.1038/s41467-024-52491-3] [Citation(s) in RCA: 0] [Impact Index Per Article: 0] [Reference Citation Analysis] [Abstract] [Key Words] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Received: 03/28/2024] [Accepted: 09/11/2024] [Indexed: 09/20/2024] Open
Abstract
The interaction of condensed phase systems with external electric fields is of major importance in a myriad of processes in nature and technology, ranging from the field-directed motion of cells (galvanotaxis), to geochemistry and the formation of ice phases on planets, to field-directed chemical catalysis and energy storage and conversion systems including supercapacitors, batteries and solar cells. Molecular simulation in the presence of electric fields would give important atomistic insight into these processes but applications of the most accurate methods such as ab-initio molecular dynamics (AIMD) are limited in scope by their computational expense. Here we introduce Perturbed Neural Network Potential Molecular Dynamics (PNNP MD) to push back the accessible time and length scales of such simulations. We demonstrate that important dielectric properties of liquid water including the field-induced relaxation dynamics, the dielectric constant and the field-dependent IR spectrum can be machine learned up to surprisingly high field strengths of about 0.2 V Å-1 without loss in accuracy when compared to ab-initio molecular dynamics. This is remarkable because, in contrast to most previous approaches, the two neural networks on which PNNP MD is based are exclusively trained on molecular configurations sampled from zero-field MD simulations, demonstrating that the networks not only interpolate but also reliably extrapolate the field response. PNNP MD is based on rigorous theory yet it is simple, general, modular, and systematically improvable allowing us to obtain atomistic insight into the interaction of a wide range of condensed phase systems with external electric fields.
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Affiliation(s)
- Kit Joll
- Department of Physics and Astronomy and Thomas Young Centre, University College London, London, UK
| | - Philipp Schienbein
- Department of Physics and Astronomy and Thomas Young Centre, University College London, London, UK.
- Department of Physics, Imperial College London, South Kensington, London, UK.
| | - Kevin M Rosso
- Pacific Northwest National Laboratory, Richland, Washington, UK
| | - Jochen Blumberger
- Department of Physics and Astronomy and Thomas Young Centre, University College London, London, UK.
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29
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Chen Z, Zhou H, Kong F, Dou Z, Wang M. Selectivity switch via tuning surface static electric field in photocatalytic alcohol conversion. Innovation (N Y) 2024; 5:100659. [PMID: 39071221 PMCID: PMC11278800 DOI: 10.1016/j.xinn.2024.100659] [Citation(s) in RCA: 0] [Impact Index Per Article: 0] [Reference Citation Analysis] [Abstract] [Track Full Text] [Download PDF] [Figures] [Journal Information] [Subscribe] [Scholar Register] [Received: 03/10/2024] [Accepted: 06/16/2024] [Indexed: 07/30/2024] Open
Abstract
Photocatalysis has shown great potential in organic reactions, while controlling the selectivity is a long-standing goal and challenge due to the involvement of various radical intermediates. In this study, we have realized selectivity control in the photocatalytic conversion of alcohols via engineering the surface static electric field of the CdS semiconductor. By leveraging the Au-CdS interaction to adjust lattice strain, which influences the intensity of the surface static electric field, we altered the pathways of alcohol conversion. The increased intensity of the surface static electric field changed the activation pathways of the C-H/O-H bond, leading to the selective formation of targeted C/O-based radical intermediates and altering the selectivity from aldehydes to dimers. A wide range of alcohols, such as aromatic alcohol and thiophenol alcohol, were selectively converted into aldehyde or dimer. This work provides an effective strategy for selectively controlling reaction pathways by generating a surface electric field.
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Affiliation(s)
- Zhiwei Chen
- State Key Laboratory of Fine Chemicals, School of Chemistry, Dalian University of Technology, Dalian 116024, China
| | - Hongru Zhou
- State Key Laboratory of Fine Chemicals, School of Chemistry, Dalian University of Technology, Dalian 116024, China
| | - Fanhao Kong
- State Key Laboratory of Fine Chemicals, School of Chemistry, Dalian University of Technology, Dalian 116024, China
| | - Zhaolin Dou
- State Key Laboratory of Fine Chemicals, School of Chemistry, Dalian University of Technology, Dalian 116024, China
| | - Min Wang
- State Key Laboratory of Fine Chemicals, School of Chemistry, Dalian University of Technology, Dalian 116024, China
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30
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Chen CY, Chai JD. Effect of Oriented External Electric Fields on the Electronic Properties of Linear Acenes: A Thermally Assisted Occupation DFT Study. Molecules 2024; 29:4245. [PMID: 39275093 PMCID: PMC11396984 DOI: 10.3390/molecules29174245] [Citation(s) in RCA: 0] [Impact Index Per Article: 0] [Reference Citation Analysis] [Abstract] [Key Words] [Grants] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Received: 08/18/2024] [Revised: 08/31/2024] [Accepted: 09/05/2024] [Indexed: 09/16/2024] Open
Abstract
Recently, oriented external electric fields (OEEFs) have earned much attention due to the possibility of tuning the properties of electronic systems. From a theoretical perspective, one can resort to electronic structure calculations to understand how the direction and strength of OEEFs affect the properties of electronic systems. However, for multi-reference (MR) systems, calculations employing the popular Kohn-Sham density functional theory with the traditional semilocal and hybrid exchange-correlation energy functionals can yield erroneous results. Owing to its decent compromise between accuracy and efficiency for MR systems at the nanoscale (i.e., MR nanosystems), in this study, thermally assisted occupation density functional theory (TAO-DFT) is adopted to explore the electronic properties of n-acenes (n = 2-10), containing n linearly fused benzene rings, in OEEFs, where the OEEFs of various electric field strengths are applied along the long axes of n-acenes. According to our TAO-DFT calculations, the ground states of n-acenes in OEEFs are singlets for all the cases examined. The effect of OEEFs is shown to be significant on the vertical ionization potentials and vertical electron affinities of ground-state n-acenes with odd-number fused benzene rings. Moreover, the MR character of ground-state n-acenes in OEEFs increases with the increase in the acene length and/or the electric field strength.
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Affiliation(s)
- Chi-Yu Chen
- Department of Physics, National Taiwan University, Taipei 10617, Taiwan
| | - Jeng-Da Chai
- Department of Physics, National Taiwan University, Taipei 10617, Taiwan
- Center for Theoretical Physics and Center for Quantum Science and Engineering, National Taiwan University, Taipei 10617, Taiwan
- Physics Division, National Center for Theoretical Sciences, Taipei 10617, Taiwan
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31
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Li Y, Ding J, Qin W. Enhanced Selectivity in Microdroplet-Mediated Enzyme Catalysis. J Am Chem Soc 2024; 146:24389-24397. [PMID: 39073863 DOI: 10.1021/jacs.4c06171] [Citation(s) in RCA: 0] [Impact Index Per Article: 0] [Reference Citation Analysis] [Abstract] [MESH Headings] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Indexed: 07/30/2024]
Abstract
Natural enzymes with enhanced catalytic activity and selectivity have long been studied by tuning the microenvironment around the active site, but how to modulate the active-site electric field in a simple fashion remains challenging. Here, we demonstrate that microdroplets as a simple yet versatile reactor can enhance the electric field at the active site of an enzyme. By using horseradish peroxidase as a model, improved selectivity in microdroplet-mediated enzyme catalysis can be obtained. Quantum mechanical/molecular dynamics calculations and vibrational Stark spectroscopy reveal that the electric field at the microdroplet interface can influence the electrostatic preorganization and orientation of the enzyme to enhance its internal electric field. As a result, the free energies of the substrate and heme can be tuned by the internal electric field, thereby changing its catalytic reaction pathway for a classical substrate, 3,3',5,5'-tetramethylbenzidine, and enabling selective C-N additions for specific substrates. This finding provides a green, simple, and effective way to modulate enzyme-catalyzed reactions and holds promise for a broad spectrum of biosensing and biosynthesis applications.
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Affiliation(s)
- Yinhao Li
- CAS Key Laboratory of Coastal Environmental Processes and Ecological Remediation, Yantai Institute of Coastal Zone Research (YIC), Chinese Academy of Sciences (CAS), Shandong Key Laboratory of Coastal Environmental Processes, YICCAS, Yantai, Shandong 264003, P. R. China
- University of Chinese Academy of Sciences, Beijing 100049, P. R. China
| | - Jiawang Ding
- CAS Key Laboratory of Coastal Environmental Processes and Ecological Remediation, Yantai Institute of Coastal Zone Research (YIC), Chinese Academy of Sciences (CAS), Shandong Key Laboratory of Coastal Environmental Processes, YICCAS, Yantai, Shandong 264003, P. R. China
- University of Chinese Academy of Sciences, Beijing 100049, P. R. China
| | - Wei Qin
- CAS Key Laboratory of Coastal Environmental Processes and Ecological Remediation, Yantai Institute of Coastal Zone Research (YIC), Chinese Academy of Sciences (CAS), Shandong Key Laboratory of Coastal Environmental Processes, YICCAS, Yantai, Shandong 264003, P. R. China
- Laboratory for Marine Biology and Biotechnology, Qingdao Marine Science and Technology Center, Qingdao, Shandong 266237, P. R. China
- Center for Ocean Mega-Science, Chinese Academy of Sciences, Qingdao, Shandong 266071, P. R. China
- University of Chinese Academy of Sciences, Beijing 100049, P. R. China
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32
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Tang C, Su M, Lu T, Zheng J, Wang J, Zhou Y, Zou YL, Liu W, Huang R, Xu W, Chen L, Zhang Y, Bai J, Yang Y, Shi J, Liu J, Hong W. Massive acceleration of S N2 reaction using the oriented external electric field. Chem Sci 2024; 15:13486-13494. [PMID: 39183916 PMCID: PMC11339978 DOI: 10.1039/d4sc03759f] [Citation(s) in RCA: 0] [Impact Index Per Article: 0] [Reference Citation Analysis] [Abstract] [Grants] [Track Full Text] [Download PDF] [Figures] [Journal Information] [Subscribe] [Scholar Register] [Received: 06/07/2024] [Accepted: 07/17/2024] [Indexed: 08/27/2024] Open
Abstract
Nucleophilic substitution is one of the most fundamental chemical reactions, and the pursuit of high reaction rates of the reaction is one of the ultimate goals in catalytic and organic chemistry. The reaction barrier of the nucleophilic substitution originates from the highly polar nature of the transition state that can be stabilized under the electric field created by the solvent environment. However, the intensity of the induced solvent-electric field is relatively small due to the random orientation of solvent molecules, which hinders the catalytic effects and restricts the reaction rates. This work shows that oriented external electric fields applied within a confined nanogap between two nanoscopic tips could accelerate the Menshutkin reaction by more than four orders of magnitude (over 39 000 times). The theoretical calculations reveal that the electric field inside the nanogap reduces the energy barrier to increase the reaction rate. Our work suggests the great potential of electrostatic catalysis for green synthesis in the future.
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Affiliation(s)
- Chun Tang
- State Key Laboratory of Physical Chemistry of Solid Surfaces, College of Chemistry and Chemical Engineering, Innovation Laboratory for Sciences and Technologies of Energy Materials of Fujian Province (IKKEM), Xiamen University Xiamen China
| | - Meiling Su
- State Key Laboratory of Physical Chemistry of Solid Surfaces, College of Chemistry and Chemical Engineering, Innovation Laboratory for Sciences and Technologies of Energy Materials of Fujian Province (IKKEM), Xiamen University Xiamen China
| | - Taige Lu
- State Key Laboratory of Physical Chemistry of Solid Surfaces, College of Chemistry and Chemical Engineering, Innovation Laboratory for Sciences and Technologies of Energy Materials of Fujian Province (IKKEM), Xiamen University Xiamen China
| | - Jueting Zheng
- State Key Laboratory of Physical Chemistry of Solid Surfaces, College of Chemistry and Chemical Engineering, Innovation Laboratory for Sciences and Technologies of Energy Materials of Fujian Province (IKKEM), Xiamen University Xiamen China
| | - Juejun Wang
- State Key Laboratory of Physical Chemistry of Solid Surfaces, College of Chemistry and Chemical Engineering, Innovation Laboratory for Sciences and Technologies of Energy Materials of Fujian Province (IKKEM), Xiamen University Xiamen China
| | - Yu Zhou
- State Key Laboratory of Physical Chemistry of Solid Surfaces, College of Chemistry and Chemical Engineering, Innovation Laboratory for Sciences and Technologies of Energy Materials of Fujian Province (IKKEM), Xiamen University Xiamen China
| | - Yu-Ling Zou
- State Key Laboratory of Physical Chemistry of Solid Surfaces, College of Chemistry and Chemical Engineering, Innovation Laboratory for Sciences and Technologies of Energy Materials of Fujian Province (IKKEM), Xiamen University Xiamen China
| | - Wenqing Liu
- State Key Laboratory of Physical Chemistry of Solid Surfaces, College of Chemistry and Chemical Engineering, Innovation Laboratory for Sciences and Technologies of Energy Materials of Fujian Province (IKKEM), Xiamen University Xiamen China
| | - Ruiyun Huang
- State Key Laboratory of Physical Chemistry of Solid Surfaces, College of Chemistry and Chemical Engineering, Innovation Laboratory for Sciences and Technologies of Energy Materials of Fujian Province (IKKEM), Xiamen University Xiamen China
| | - Wei Xu
- State Key Laboratory of Physical Chemistry of Solid Surfaces, College of Chemistry and Chemical Engineering, Innovation Laboratory for Sciences and Technologies of Energy Materials of Fujian Province (IKKEM), Xiamen University Xiamen China
| | - Lijue Chen
- State Key Laboratory of Physical Chemistry of Solid Surfaces, College of Chemistry and Chemical Engineering, Innovation Laboratory for Sciences and Technologies of Energy Materials of Fujian Province (IKKEM), Xiamen University Xiamen China
| | - Yanxi Zhang
- State Key Laboratory of Physical Chemistry of Solid Surfaces, College of Chemistry and Chemical Engineering, Innovation Laboratory for Sciences and Technologies of Energy Materials of Fujian Province (IKKEM), Xiamen University Xiamen China
| | - Jie Bai
- State Key Laboratory of Physical Chemistry of Solid Surfaces, College of Chemistry and Chemical Engineering, Innovation Laboratory for Sciences and Technologies of Energy Materials of Fujian Province (IKKEM), Xiamen University Xiamen China
| | - Yang Yang
- State Key Laboratory of Physical Chemistry of Solid Surfaces, College of Chemistry and Chemical Engineering, Innovation Laboratory for Sciences and Technologies of Energy Materials of Fujian Province (IKKEM), Xiamen University Xiamen China
| | - Jia Shi
- State Key Laboratory of Physical Chemistry of Solid Surfaces, College of Chemistry and Chemical Engineering, Innovation Laboratory for Sciences and Technologies of Energy Materials of Fujian Province (IKKEM), Xiamen University Xiamen China
| | - Junyang Liu
- State Key Laboratory of Physical Chemistry of Solid Surfaces, College of Chemistry and Chemical Engineering, Innovation Laboratory for Sciences and Technologies of Energy Materials of Fujian Province (IKKEM), Xiamen University Xiamen China
| | - Wenjing Hong
- State Key Laboratory of Physical Chemistry of Solid Surfaces, College of Chemistry and Chemical Engineering, Innovation Laboratory for Sciences and Technologies of Energy Materials of Fujian Province (IKKEM), Xiamen University Xiamen China
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33
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Maitra A, Lake WR, Mohamed A, Edington SC, Das P, Thompson BC, Hammes-Schiffer S, Johnson M, Dawlaty JM. Measuring the Electric Fields of Ions Captured in Crown Ethers. J Phys Chem Lett 2024; 15:7458-7465. [PMID: 39008844 DOI: 10.1021/acs.jpclett.4c01303] [Citation(s) in RCA: 0] [Impact Index Per Article: 0] [Reference Citation Analysis] [Abstract] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Indexed: 07/17/2024]
Abstract
Controlling reactivity with electric fields is a persistent challenge in chemistry. One approach is to tether ions at well-defined locations near a reactive center. To quantify fields arising from ions, we report crown ethers that capture metal cations as field sources and a covalently bound vibrational Stark shift probe as a field sensor. We use experiments and computations in both the gas and liquid phases to quantify the vibrational frequencies of the probe and estimate the electric fields from the captured ions. Cations, in general, blue shift the probe frequency, with effective fields estimated to vary in the range of ∼0.2-3 V/nm in the liquid phase. Comparison of the gas and liquid phase data provides insight into the effects of mutual polarization of the molecule and solvent and screening of the ion's field. These findings reveal the roles of charge, local screening, and geometry in the design of tailored electric fields.
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Affiliation(s)
- Anwesha Maitra
- Department of Chemistry, University of Southern California, Los Angeles, California 90089, United States
| | - William R Lake
- Department of Chemistry, Yale University, New Haven, Connecticut 06520, United States
| | - Ahmed Mohamed
- Department of Chemistry, Yale University, New Haven, Connecticut 06520, United States
| | - Sean C Edington
- Department of Molecular, Cellular, and Biomedical Sciences and Department of Chemistry, University of New Hampshire, Durham, New Hampshire 03824, United States
| | - Pratyusha Das
- Department of Chemistry, University of Southern California, Los Angeles, California 90089, United States
| | - Barry C Thompson
- Department of Chemistry and Loker Hydrocarbon Institute, University of Southern California, Los Angeles, California 90089, United States
| | - Sharon Hammes-Schiffer
- Department of Chemistry, Princeton University, Princeton, New Jersey 08544, United States
| | - Mark Johnson
- Department of Chemistry, Yale University, New Haven, Connecticut 06520, United States
| | - Jahan M Dawlaty
- Department of Chemistry, University of Southern California, Los Angeles, California 90089, United States
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34
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Xia Y, Xu J, Li J, Chen B, Dai Y, Zare RN. Visualization of the Charging of Water Droplets Sprayed into Air. J Phys Chem A 2024; 128:5684-5690. [PMID: 38968601 DOI: 10.1021/acs.jpca.4c02981] [Citation(s) in RCA: 0] [Impact Index Per Article: 0] [Reference Citation Analysis] [Abstract] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Indexed: 07/07/2024]
Abstract
Water droplets are spraying into air using air as a nebulizing gas, and the droplets pass between two parallel metal plates with opposite charges. A high-speed camera records droplet trajectories in the uniform electric field, providing visual evidence for the Lenard effect, that is, smaller droplets are negatively charged whereas larger droplets are positively charged. By analyzing the velocities of the droplets between the metal plates, the charges on the droplets can be estimated. Some key observations include: (1) localized electric fields with intensities on the order of 109 V/m are generated, and charges are expected to jump (micro-lightening) between a positively charged larger droplet and the negatively charged smaller droplet as they separate; (2) the strength of the electric field is sufficiently powerful to ionize gases surrounding the droplets; and (3) observations in an open-air mass spectrometer reveal the presence of ions such as N2+, O2+, NO+, and NO2+. These findings provide new insight into the origins of some atmospheric ions and have implications for understanding ionization processes in the atmosphere and chemical transformations in water droplets, advancing knowledge in the field of aerosol science and water microdroplet chemistry.
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Affiliation(s)
- Yu Xia
- Department of Chemistry, Stanford University, Stanford, California 94305, United States
- Hubei Key Laboratory of Environmental and Health Effects of Persistent Toxic Substances, School of Environment and Health, Jianghan University, Wuhan 430056, P. R. China
| | - Jinheng Xu
- Department of Chemistry, Stanford University, Stanford, California 94305, United States
| | - Juan Li
- Hubei Key Laboratory of Environmental and Health Effects of Persistent Toxic Substances, School of Environment and Health, Jianghan University, Wuhan 430056, P. R. China
| | - Bolei Chen
- Hubei Key Laboratory of Environmental and Health Effects of Persistent Toxic Substances, School of Environment and Health, Jianghan University, Wuhan 430056, P. R. China
| | - Yifan Dai
- Department of Biomedical Engineering, Center for Biomolecular Condensates, Washington University in St. Louis, Saint Louis, Missouri 63130, United States
| | - Richard N Zare
- Department of Chemistry, Stanford University, Stanford, California 94305, United States
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35
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Wang H, Chen DR, Lin YC, Lin PH, Chang JT, Muthu J, Hofmann M, Hsieh YP. Enhancing the Electrochemical Activity of 2D Materials Edges through Oriented Electric Fields. ACS NANO 2024; 18. [PMID: 39012271 PMCID: PMC11295188 DOI: 10.1021/acsnano.4c06341] [Citation(s) in RCA: 0] [Impact Index Per Article: 0] [Reference Citation Analysis] [Abstract] [Key Words] [Grants] [Track Full Text] [Subscribe] [Scholar Register] [Received: 05/14/2024] [Revised: 07/04/2024] [Accepted: 07/08/2024] [Indexed: 07/17/2024]
Abstract
The edges of 2D materials have emerged as promising electrochemical catalyst systems, yet their performance still lags behind that of noble metals. Here, we demonstrate the potential of oriented electric fields (OEFs) to enhance the electrochemical activity of 2D materials edges. By atomically engineering the edge of a fluorographene/graphene/MoS2 heterojunction nanoribbon, strong and localized OEFs were realized as confirmed by simulations and spatially resolved spectroscopy. The observed fringing OEF results in an enhancement of the heterogeneous charge transfer rate between the edge and the electrolyte by 2 orders of magnitude according to impedance spectroscopy. Ab initio calculations indicate a field-induced decrease in the reactant adsorption energy as the origin of this improvement. We apply the OEF-enhanced edge reactivity to hydrogen evolution reactions (HER) and observe a significantly enhanced electrochemical performance, as evidenced by a 30% decrease in Tafel slope and a 3-fold enhanced turnover frequency. Our findings demonstrate the potential of OEFs for tailoring the catalytic properties of 2D material edges toward future complex reactions.
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Affiliation(s)
- Hao Wang
- Institute
of Atomic and Molecular Sciences, Academia
Sinica, Taipei 10617, Taiwan
- Department
of Physics, National Taiwan University, Taipei 10617, Taiwan
| | - Ding-Rui Chen
- Institute
of Atomic and Molecular Sciences, Academia
Sinica, Taipei 10617, Taiwan
- International
Graduate Program of Molecular Science and Technology, National Taiwan University, Taipei 10617, Taiwan
- Molecular
Science and Technology Program, Taiwan International Graduate Program, Academia Sinica, Taipei 10617, Taiwan
| | - You-Chen Lin
- Institute
of Atomic and Molecular Sciences, Academia
Sinica, Taipei 10617, Taiwan
| | - Po-Han Lin
- Department
of Physics, National Taiwan University, Taipei 10617, Taiwan
| | - Jui-Teng Chang
- Department
of Physics, National Taiwan University, Taipei 10617, Taiwan
| | - Jeyavelan Muthu
- Department
of Physics, National Taiwan University, Taipei 10617, Taiwan
- Department
of Low Dimensional Systems, J. Heyrovský
Institute of Physical Chemistry, Prague 18200, Czech Republic
| | - Mario Hofmann
- Department
of Physics, National Taiwan University, Taipei 10617, Taiwan
| | - Ya-Ping Hsieh
- Institute
of Atomic and Molecular Sciences, Academia
Sinica, Taipei 10617, Taiwan
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36
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Jain S, Danovich D, Shaik S. Dinitrogen Activation within Frustrated Lewis Pairs Is Promoted by Adding External Electric Fields. J Phys Chem A 2024; 128:4595-4604. [PMID: 38775015 DOI: 10.1021/acs.jpca.4c00437] [Citation(s) in RCA: 0] [Impact Index Per Article: 0] [Reference Citation Analysis] [Abstract] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Indexed: 06/06/2024]
Abstract
This study uses computational means to explore the feasibility of N2 cleavage by frustrated Lewis pair (FLPs) species. The employed FLP systems are phosphane/borane (1) and carbene/borane (2). Previous studies show that 1 and 2 react with H2 and CO2 but do not activate N2. The present study demonstrates that N2 is indeed inert, and its activation requires augmentation of the FLPs by an external tool. As we demonstrate here, FLP-mediated N2 activation can be achieved by an external electric field oriented along the reaction axis of the FLP. Additionally, the study demonstrates that FLP -N2 activation generates useful nitrogen compound, e.g., hydrazine (H2N-NH2). In summary, we conclude that FLP effectively activates N2 in tandem with oriented external electric fields (OEEFs), which play a crucial role. This FLP/OEEF combination may serve as a general activator of inert molecules.
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Affiliation(s)
- Shailja Jain
- Institute of Chemistry, The Hebrew University of Jerusalem, Edmond J. Safra Campus, Givat Ram, Jerusalem 9190401, Israel
| | - David Danovich
- Institute of Chemistry, The Hebrew University of Jerusalem, Edmond J. Safra Campus, Givat Ram, Jerusalem 9190401, Israel
| | - Sason Shaik
- Institute of Chemistry, The Hebrew University of Jerusalem, Edmond J. Safra Campus, Givat Ram, Jerusalem 9190401, Israel
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37
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Weight BM, Weix DJ, Tonzetich ZJ, Krauss TD, Huo P. Cavity Quantum Electrodynamics Enables para- and ortho-Selective Electrophilic Bromination of Nitrobenzene. J Am Chem Soc 2024; 146:16184-16193. [PMID: 38814893 PMCID: PMC11177318 DOI: 10.1021/jacs.4c04045] [Citation(s) in RCA: 0] [Impact Index Per Article: 0] [Reference Citation Analysis] [Abstract] [Grants] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Received: 03/21/2024] [Revised: 05/15/2024] [Accepted: 05/17/2024] [Indexed: 06/01/2024]
Abstract
Coupling molecules to a quantized radiation field inside an optical cavity has shown great promise to modify chemical reactivity. In this work, we show that the ground-state selectivity of the electrophilic bromination of nitrobenzene can be fundamentally changed by strongly coupling the reaction to the cavity, generating ortho- or para-substituted products instead of the meta product. Importantly, these are products that are not obtained from the same reaction outside the cavity. A recently developed ab initio approach was used to theoretically compute the relative energies of the cationic Wheland intermediates, which indicate the kinetically preferred bromination site for all products. Performing an analysis of the ground-state electron density for the Wheland intermediates inside and outside the cavity, we demonstrate how strong coupling induces reorganization of the molecular charge distribution, which in turn leads to different bromination sites directly dependent on the cavity conditions. Overall, the results presented here can be used to understand cavity induced changes to ground-state chemical reactivity from a mechanistic perspective as well as to directly connect frontier theoretical simulations to state-of-the-art, but realistic, experimental cavity conditions.
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Affiliation(s)
- Braden M. Weight
- Department
of Physics and Astronomy, University of
Rochester, Rochester, New York 14627, United States
| | - Daniel J. Weix
- Department
of Chemistry, University of Wisconsin-Madison, Madison, Wisconsin 53706, United States
| | - Zachary J. Tonzetich
- Department
of Chemistry, University of Texas at San
Antonio, San Antonio, Texas 78249, United States
| | - Todd D. Krauss
- Department
of Chemistry, University of Rochester, Rochester, New York 14627, United States
- The
Institute of Optics, Hajim School of Engineering, University of Rochester, Rochester, New York 14627, United States
| | - Pengfei Huo
- Department
of Chemistry, University of Rochester, Rochester, New York 14627, United States
- The
Institute of Optics, Hajim School of Engineering, University of Rochester, Rochester, New York 14627, United States
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38
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Guo J, Chen PK, Chang S. Molecular-Scale Electronics: From Individual Molecule Detection to the Application of Recognition Sensing. Anal Chem 2024; 96:9303-9316. [PMID: 38809941 DOI: 10.1021/acs.analchem.3c04656] [Citation(s) in RCA: 0] [Impact Index Per Article: 0] [Reference Citation Analysis] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Indexed: 05/31/2024]
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39
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Cruz R, Ataka K, Heberle J, Kozuch J. Evaluating aliphatic CF, CF2, and CF3 groups as vibrational Stark effect reporters. J Chem Phys 2024; 160:204308. [PMID: 38814010 DOI: 10.1063/5.0198303] [Citation(s) in RCA: 0] [Impact Index Per Article: 0] [Reference Citation Analysis] [Abstract] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Received: 01/17/2024] [Accepted: 05/09/2024] [Indexed: 05/31/2024] Open
Abstract
Given the extensive use of fluorination in molecular design, it is imperative to understand the solvation properties of fluorinated compounds and the impact of the C-F bond on electrostatic interactions. Vibrational spectroscopy can provide direct insights into these interactions by using the C-F bond stretching [v(C-F)] as an electric field probe through the vibrational Stark effect (VSE). In this work, we explore the VSE of the three basic patterns of aliphatic fluorination, i.e., mono-, di-, and trifluorination in CF, CF2, and CF3 groups, respectively, and compare their response to the well-studied aromatic v(C-F). Magnitudes (i.e., Stark tuning rates) and orientations of the difference dipole vectors of the v(C-F)-containing normal modes were determined using density functional theory and a molecular dynamics (MD)-assisted solvatochromic analysis of model compounds in solvents of varying polarity. We obtain Stark tuning rates of 0.2-0.8 cm-1/(MV/cm), with smallest and largest electric field sensitivities for CFaliphatic and CF3,aliphatic, respectively. While average electric fields of solvation were oriented along the main symmetry axis of the CFn, and thus along its static dipole, the Stark tuning rate vectors were tilted by up to 87° potentially enabling to map electrostatics in multiple dimensions. We discuss the influence of conformational heterogeneity on spectral shifts and point out the importance of multipolar and/or polarizable MD force fields to describe the electrostatics of fluorinated molecules. The implications of this work are of direct relevance for studies of fluorinated molecules as found in pharmaceuticals, fluorinated peptides, and proteins.
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Affiliation(s)
- R Cruz
- Fachbereich Physik, Freie Universität Berlin, Berlin 14195, Germany
| | - K Ataka
- Fachbereich Physik, Freie Universität Berlin, Berlin 14195, Germany
| | - J Heberle
- Fachbereich Physik, Freie Universität Berlin, Berlin 14195, Germany
- Forschungsbau SupraFAB, Freie Universität Berlin, Berlin 14195, Germany
| | - J Kozuch
- Fachbereich Physik, Freie Universität Berlin, Berlin 14195, Germany
- Forschungsbau SupraFAB, Freie Universität Berlin, Berlin 14195, Germany
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40
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Bofill JM, Severi M, Quapp W, Ribas-Ariño J, de P R Moreira I, Albareda G. Optimal Oriented External Electric Fields to Trigger a Barrierless Oxaphosphetane Ring Opening Step of the Wittig Reaction. Chemistry 2024; 30:e202400173. [PMID: 38457260 DOI: 10.1002/chem.202400173] [Citation(s) in RCA: 0] [Impact Index Per Article: 0] [Reference Citation Analysis] [Abstract] [Key Words] [Grants] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Received: 01/15/2024] [Revised: 03/05/2024] [Accepted: 03/07/2024] [Indexed: 03/10/2024]
Abstract
The Wittig reaction is one of the most important processes in organic chemistry for the asymmetric synthesis of olefinic compounds. In view of the increasingly acknowledged potentiality of the electric fields in promoting reactions, here we will consider the effect of the oriented external electric field (OEEF) on the second step of Wittig reaction (i. e. the ring opening oxaphosphetane) in a model system for non-stabilized ylides. In particular, we have determined the optimal direction and strength of the electric field that should be applied to annihilate the reaction barrier of the ring opening through the polarizable molecular electric dipole (PMED) model that we have recently developed. We conclude that the application of the optimal external electric field for the oxaphosphetane ring opening favours a Bestmann-like mechanism.
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Affiliation(s)
- Josep Maria Bofill
- Departament de Química Inorgànica i Orgànica, Secció de Química Orgànica, Universitat de Barcelona, C/Martí i Franquès 1, 08028, Barcelona, Spain
- Institut de Química Teòrica i Computacional (IQTCUB), Universitat de Barcelona, C/Martí i Franquès 1, 08028, Barcelona, Spain
| | - Marco Severi
- Department of Chemistry G. Ciamician, University of Bologna, Via F. Selmi 2, 40126, Bologna, Italy
| | - Wolfgang Quapp
- Mathematisches Institut, Universität Leipzig, PF 100920, D-04009, Leipzig, Germany
| | - Jordi Ribas-Ariño
- Institut de Química Teòrica i Computacional (IQTCUB), Universitat de Barcelona, C/Martí i Franquès 1, 08028, Barcelona, Spain
- Departament de Ciència de Materials i Química Física, Secció de Química Física, Universitat de Barcelona, C/Martí i Franquès 1, 08028, Barcelona, Spain
| | - Ibério de P R Moreira
- Institut de Química Teòrica i Computacional (IQTCUB), Universitat de Barcelona, C/Martí i Franquès 1, 08028, Barcelona, Spain
- Departament de Ciència de Materials i Química Física, Secció de Química Física, Universitat de Barcelona, C/Martí i Franquès 1, 08028, Barcelona, Spain
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41
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Xu T, Tian F, Jiao D, Fan J, Jin Z, Zhang L, Zhang W, Zheng L, Singh DJ, Zhang L, Zheng W, Cui X. In Situ Construction of Built-In Opposite Electric Field Balanced Surface Adsorption for Hydrogen Evolution Reaction. SMALL (WEINHEIM AN DER BERGSTRASSE, GERMANY) 2024; 20:e2309249. [PMID: 38152975 DOI: 10.1002/smll.202309249] [Citation(s) in RCA: 0] [Impact Index Per Article: 0] [Reference Citation Analysis] [Abstract] [Key Words] [Grants] [Track Full Text] [Subscribe] [Scholar Register] [Received: 10/13/2023] [Revised: 11/19/2023] [Indexed: 12/29/2023]
Abstract
Achieving a balance between H-atom adsorption and binding with H2 desorption is crucial for catalyzing hydrogen evolution reaction (HER). In this study, the feasibility of designing and implementing built-in opposite electric fields (OEF) is demonstrated to enable optimal H atom adsorption and H2 desorption using the Ni3(BO3)2/Ni5P4 heterostructure as an example. Through density functional theory calculations of planar averaged potentials, it shows that opposite combinations of inward and outward electric fields can be achieved at the interface of Ni3(BO3)2/Ni5P4, leading to the optimization of the H adsorption free energy (ΔGH*) near electric neutrality (0.05 eV). Based on this OEF concept, the study experimentally validated the Ni3(BO3)2/Ni5P4 system electrochemically forming Ni3(BO3)2 through cyclic voltammetry scanning of B-doped Ni5P4. The surface of Ni3(BO3)2 undergoes reconstruction, as characterized by Grazing Incidence Wide-Angle X-ray Scattering (GIWAXS) and in situ Raman spectroscopy. The resulting catalyst exhibits excellent HER activity in alkaline media, with a low overpotential of 33 mV at 10 mA cm-2 and stability maintained for over 360 h. Therefore, the design strategy of build-in opposite electric field enables the development of high-performance HER catalysts and presents a promising approach for electrocatalyst advancement.
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Affiliation(s)
- Tianyi Xu
- State Key Laboratory of Automotive Simulation and Control, School of Materials Science and Engineering, Key Laboratory of Automobile Materials of MOE, Jilin Provincial International Cooperation Key Laboratory of High-Efficiency Clean Energy Materials, Electron Microscopy Center, Jilin University, Changchun, 130012, China
| | - Fuyu Tian
- State Key Laboratory of Automotive Simulation and Control, School of Materials Science and Engineering, Key Laboratory of Automobile Materials of MOE, Jilin Provincial International Cooperation Key Laboratory of High-Efficiency Clean Energy Materials, Electron Microscopy Center, Jilin University, Changchun, 130012, China
| | - Dongxu Jiao
- State Key Laboratory of Automotive Simulation and Control, School of Materials Science and Engineering, Key Laboratory of Automobile Materials of MOE, Jilin Provincial International Cooperation Key Laboratory of High-Efficiency Clean Energy Materials, Electron Microscopy Center, Jilin University, Changchun, 130012, China
| | - Jinchang Fan
- State Key Laboratory of Automotive Simulation and Control, School of Materials Science and Engineering, Key Laboratory of Automobile Materials of MOE, Jilin Provincial International Cooperation Key Laboratory of High-Efficiency Clean Energy Materials, Electron Microscopy Center, Jilin University, Changchun, 130012, China
| | - Zhaoyong Jin
- State Key Laboratory of Automotive Simulation and Control, School of Materials Science and Engineering, Key Laboratory of Automobile Materials of MOE, Jilin Provincial International Cooperation Key Laboratory of High-Efficiency Clean Energy Materials, Electron Microscopy Center, Jilin University, Changchun, 130012, China
| | - Lei Zhang
- College of Chemistry, Jilin University, 2699 Qianjin Street, Changchun, 130012, China
| | - Wei Zhang
- State Key Laboratory of Automotive Simulation and Control, School of Materials Science and Engineering, Key Laboratory of Automobile Materials of MOE, Jilin Provincial International Cooperation Key Laboratory of High-Efficiency Clean Energy Materials, Electron Microscopy Center, Jilin University, Changchun, 130012, China
| | - Lirong Zheng
- Beijing Synchrotron Radiation Facility, Institute of High Energy Physics, Chinese Academy of Sciences, Beijing, 100049, China
| | - David J Singh
- Department of Physics and Astronomy and Department of Chemistry, University of Missouri, Columbia, MO, 65211, USA
| | - Lijun Zhang
- State Key Laboratory of Automotive Simulation and Control, School of Materials Science and Engineering, Key Laboratory of Automobile Materials of MOE, Jilin Provincial International Cooperation Key Laboratory of High-Efficiency Clean Energy Materials, Electron Microscopy Center, Jilin University, Changchun, 130012, China
| | - Weitao Zheng
- State Key Laboratory of Automotive Simulation and Control, School of Materials Science and Engineering, Key Laboratory of Automobile Materials of MOE, Jilin Provincial International Cooperation Key Laboratory of High-Efficiency Clean Energy Materials, Electron Microscopy Center, Jilin University, Changchun, 130012, China
| | - Xiaoqiang Cui
- State Key Laboratory of Automotive Simulation and Control, School of Materials Science and Engineering, Key Laboratory of Automobile Materials of MOE, Jilin Provincial International Cooperation Key Laboratory of High-Efficiency Clean Energy Materials, Electron Microscopy Center, Jilin University, Changchun, 130012, China
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42
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Cao Y, Hay S, de Visser SP. An Active Site Tyr Residue Guides the Regioselectivity of Lysine Hydroxylation by Nonheme Iron Lysine-4-hydroxylase Enzymes through Proton-Coupled Electron Transfer. J Am Chem Soc 2024; 146:11726-11739. [PMID: 38636166 PMCID: PMC11066847 DOI: 10.1021/jacs.3c14574] [Citation(s) in RCA: 0] [Impact Index Per Article: 0] [Reference Citation Analysis] [Abstract] [MESH Headings] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Received: 12/22/2023] [Revised: 04/05/2024] [Accepted: 04/05/2024] [Indexed: 04/20/2024]
Abstract
Lysine dioxygenase (KDO) is an important enzyme in human physiology involved in bioprocesses that trigger collagen cross-linking and blood pressure control. There are several KDOs in nature; however, little is known about the factors that govern the regio- and stereoselectivity of these enzymes. To understand how KDOs can selectively hydroxylate their substrate, we did a comprehensive computational study into the mechanisms and features of 4-lysine dioxygenase. In particular, we selected a snapshot from the MD simulation on KDO5 and created large QM cluster models (A, B, and C) containing 297, 312, and 407 atoms, respectively. The largest model predicts regioselectivity that matches experimental observation with rate-determining hydrogen atom abstraction from the C4-H position, followed by fast OH rebound to form 4-hydroxylysine products. The calculations show that in model C, the dipole moment is positioned along the C4-H bond of the substrate and, therefore, the electrostatic and electric field perturbations of the protein assist the enzyme in creating C4-H hydroxylation selectivity. Furthermore, an active site Tyr233 residue is identified that reacts through proton-coupled electron transfer akin to the axial Trp residue in cytochrome c peroxidase. Thus, upon formation of the iron(IV)-oxo species in the catalytic cycle, the Tyr233 phenol loses a proton to the nearby Asp179 residue, while at the same time, an electron is transferred to the iron to create an iron(III)-oxo active species. This charged tyrosyl residue directs the dipole moment along the C4-H bond of the substrate and guides the selectivity to the C4-hydroxylation of the substrate.
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Affiliation(s)
- Yuanxin Cao
- Manchester
Institute of Biotechnology, The University
of Manchester, 131 Princess Street, Manchester M1 7DN, United Kingdom
- Department
of Chemistry, The University of Manchester, Oxford Road, Manchester M13 9PL, United Kingdom
| | - Sam Hay
- Manchester
Institute of Biotechnology, The University
of Manchester, 131 Princess Street, Manchester M1 7DN, United Kingdom
- Department
of Chemistry, The University of Manchester, Oxford Road, Manchester M13 9PL, United Kingdom
| | - Sam P. de Visser
- Manchester
Institute of Biotechnology, The University
of Manchester, 131 Princess Street, Manchester M1 7DN, United Kingdom
- Department
of Chemical Engineering, The University
of Manchester, Oxford Road, Manchester M13 9PL, United Kingdom
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43
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Hardy FG, Wong HPH, de Visser SP. Computational Study Into the Oxidative Ring-Closure Mechanism During the Biosynthesis of Deoxypodophyllotoxin. Chemistry 2024; 30:e202400019. [PMID: 38323740 DOI: 10.1002/chem.202400019] [Citation(s) in RCA: 0] [Impact Index Per Article: 0] [Reference Citation Analysis] [Abstract] [Key Words] [MESH Headings] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Received: 01/03/2024] [Revised: 02/01/2024] [Accepted: 02/07/2024] [Indexed: 02/08/2024]
Abstract
The nonheme iron dioxygenase deoxypodophyllotoxin synthase performs an oxidative ring-closure reaction as part of natural product synthesis in plants. How the enzyme enables the oxidative ring-closure reaction of (-)-yatein and avoids substrate hydroxylation remains unknown. To gain insight into the reaction mechanism and understand the details of the pathways leading to products and by-products we performed a comprehensive computational study. The work shows that substrate is bound tightly into the substrate binding pocket with the C7'-H bond closest to the iron(IV)-oxo species. The reaction proceeds through a radical mechanism starting with hydrogen atom abstraction from the C7'-H position followed by ring-closure and a final hydrogen transfer to form iron(II)-water and deoxypodophyllotoxin. Alternative mechanisms including substrate hydroxylation and an electron transfer pathway were explored but found to be higher in energy. The mechanism is guided by electrostatic perturbations of charged residues in the second-coordination sphere that prevent alternative pathways.
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Affiliation(s)
- Fintan G Hardy
- Manchester Institute of Biotechnology, The University of Manchester, 131 Princess Street, Manchester, M1 7DN, United Kingdom
- Department of Chemical Engineering, The University of Manchester, Oxford Road, Manchester, M13 9PL, United Kingdom
| | - Henrik P H Wong
- Manchester Institute of Biotechnology, The University of Manchester, 131 Princess Street, Manchester, M1 7DN, United Kingdom
- Department of Chemical Engineering, The University of Manchester, Oxford Road, Manchester, M13 9PL, United Kingdom
| | - Sam P de Visser
- Manchester Institute of Biotechnology, The University of Manchester, 131 Princess Street, Manchester, M1 7DN, United Kingdom
- Department of Chemical Engineering, The University of Manchester, Oxford Road, Manchester, M13 9PL, United Kingdom
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44
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Huang X, Gan PY, Gao FW, Su ZM. Tuning optical properties of π-conjugated double nanohoops under external electric field stimuli-responsiveness. Phys Chem Chem Phys 2024; 26:8716-8723. [PMID: 38416055 DOI: 10.1039/d3cp05504c] [Citation(s) in RCA: 0] [Impact Index Per Article: 0] [Reference Citation Analysis] [Abstract] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Indexed: 02/29/2024]
Abstract
Carbon nanorings have attracted substantial interest from synthetic chemists due to their unique topological structures and distinct physical properties. An intriguing π-conjugated double-nanoring structure, denoted as [8]CPP-[10]cyclacene, was constructed via the integration of [8]cycloparaphenylene ([8]CPP) into [10]cyclacene. Using the external electric field stimuli-responsiveness of [8]CPP-[10]cyclacene, directional charge transfer can be induced, resulting in the emergence of intriguing properties. The effects of the external electric field in three specific directions were explored, vertically in the [8]CPP unit (Fy), vertically in the [10]cyclacene unit (Fz), and horizontally along the double nanorings diameter (Fx). Interestingly, the external electric field vertically to the [10]cyclacene unit significantly enhanced the first hyperpolarizability (βtot) compared to that vertically to the [8]CPP unit. Notably, [8]CPP-[10]cyclacene under Fx exhibited significantly larger the βtot values (1.48 × 105 a.u.) than those of vertical Fy and Fz. This work opens up a wide range of nonlinear optics, making it a compelling area to explore in the field of carbon nanomaterials.
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Affiliation(s)
- Xiao Huang
- School of Chemistry and Environmental Engineering, Changchun University of Science and Technology, 7989 Weixing Road, Changchun 130012, China
| | - Ping-Yao Gan
- School of Chemistry and Environmental Engineering, Changchun University of Science and Technology, 7989 Weixing Road, Changchun 130012, China
| | - Feng-Wei Gao
- School of Chemistry and Environmental Engineering, Changchun University of Science and Technology, 7989 Weixing Road, Changchun 130012, China
- Chongqing Research Institute, Changchun University of Science and Technology, No. 618 Liangjiang Avenue, Longxing Town, Yubei District, Chongqing City 401135, China.
| | - Zhong-Min Su
- School of Chemistry and Environmental Engineering, Changchun University of Science and Technology, 7989 Weixing Road, Changchun 130012, China
- State Key Laboratory of Supramolecular Structure and Materials, Institute of Theoretical Chemistry, College of Chemistry, Jilin University, Changchun 130021, China.
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45
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Yang J, Liu B, Zeng L, Du B, Zhou Y, Tao H, Yun Y, Zhu M. Confining Bismuth-Halide Perovskite in Mesochannels of Silica Nanomembranes for Exceptional Photocatalytic Abatement of Air Pollutants. Angew Chem Int Ed Engl 2024; 63:e202319741. [PMID: 38196288 DOI: 10.1002/anie.202319741] [Citation(s) in RCA: 0] [Impact Index Per Article: 0] [Reference Citation Analysis] [Abstract] [Key Words] [Grants] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Received: 12/20/2023] [Revised: 01/09/2024] [Accepted: 01/09/2024] [Indexed: 01/11/2024]
Abstract
Spatially confined photocatalysis has emerged as a viable strategy for the intensification of various redox reactions, but the influence of confined structure on reaction behavior is always overlooked in gas-solid reactions. Herein, we report a nanomembrane with confining Cs3 Bi2 Br9 nanocrystals inside vertical channels of porous insulated silica thin sheets (CBB@SBA(⊥)) for photocatalytic nitric oxide (NO) abatement. The ordered one-dimensional (1D) pore channels with mere 70 nm channel length provide a highly accessible confined space for catalytic reactions. A record-breaking NO conversion efficiency of 98.2 % under a weight hourly space velocity (WHSV) of 3.0×106 mL g-1 h-1 , as well as exceptionally high stability over 14 h and durability over a wide humidity range (RH=15-90 %) was realized over SBA(⊥) confined Cs3 Bi2 Br9 , well beyond its nonconfined analogue and the Cs3 Bi2 Br9 confine in Santa Barbara Amorphous (SBA-15). Mechanism studies suggested that the insulated pore channels of SBA(⊥) in CBB@SBA(⊥) endow concentrated electron field and enhanced mass transfer that render high exposure of reactive species and lower reaction barrier needs for ⋅O2 - formation and NO oxidation, as well as prevents structural degradation of Cs3 Bi2 Br9 . This work expands an innovative strategy for designing efficient photocatalysts for air pollution remediation.
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Affiliation(s)
- Jingling Yang
- Guangdong Key Laboratory of Environmental Pollution and Health, School of Environment, Jinan University, Guangzhou, 511443, P.R. China
| | - Bin Liu
- Guangdong Key Laboratory of Environmental Pollution and Health, School of Environment, Jinan University, Guangzhou, 511443, P.R. China
| | - Lixi Zeng
- Guangdong Key Laboratory of Environmental Pollution and Health, School of Environment, Jinan University, Guangzhou, 511443, P.R. China
| | - Bibai Du
- Guangdong Key Laboratory of Environmental Pollution and Health, School of Environment, Jinan University, Guangzhou, 511443, P.R. China
| | - Yingtang Zhou
- School of Petrochemical Engineering & Environment, Zhejiang Ocean University, Zhoushan, 316022, P.R. China
| | - Hengcong Tao
- School of Petrochemical Engineering & Environment, Zhejiang Ocean University, Zhoushan, 316022, P.R. China
| | - Yang Yun
- College of Environment and Resource, Research Center of Environment and Health, Shanxi University, Taiyuan, 030006, P. R. China
| | - Mingshan Zhu
- Guangdong Key Laboratory of Environmental Pollution and Health, School of Environment, Jinan University, Guangzhou, 511443, P.R. China
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46
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Galembeck F, Santos LP, Burgo TAL, Galembeck A. The emerging chemistry of self-electrified water interfaces. Chem Soc Rev 2024; 53:2578-2602. [PMID: 38305696 DOI: 10.1039/d3cs00763d] [Citation(s) in RCA: 0] [Impact Index Per Article: 0] [Reference Citation Analysis] [Abstract] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Indexed: 02/03/2024]
Abstract
Water is known for dissipating electrostatic charges, but it is also a universal agent of matter electrification, creating charged domains in any material contacting or containing it. This new role of water was discovered during the current century. It is proven in a fast-growing number of publications reporting direct experimental measurements of excess charge and electric potential. It is indirectly verified by its success in explaining surprising phenomena in chemical synthesis, electric power generation, metastability, and phase transition kinetics. Additionally, electrification by water is opening the way for developing green technologies that are fully compatible with the environment and have great potential to contribute to sustainability. Electrification by water shows that polyphasic matter is a charge mosaic, converging with the Maxwell-Wagner-Sillars effect, which was discovered one century ago but is still often ignored. Electrified sites in a real system are niches showing various local electrochemical potentials for the charged species. Thus, the electrified mosaics display variable chemical reactivity and mass transfer patterns. Water contributes to interfacial electrification from its singular structural, electric, mixing, adsorption, and absorption properties. A long list of previously unexpected consequences of interfacial electrification includes: "on-water" reactions of chemicals dispersed in water that defy current chemical wisdom; reactions in electrified water microdroplets that do not occur in bulk water, transforming the droplets in microreactors; and lowered surface tension of water, modifying wetting, spreading, adhesion, cohesion, and other properties of matter. Asymmetric capacitors charged by moisture and water are now promising alternative equipment for simultaneously producing electric power and green hydrogen, requiring only ambient thermal energy. Changing surface tension by interfacial electrification also modifies phase-change kinetics, eliminating metastability that is the root of catastrophic electric discharges and destructive explosions. It also changes crystal habits, producing needles and dendrites that shorten battery life. These recent findings derive from a single factor, water's ability to electrify matter, touching on the most relevant aspects of chemistry. They create tremendous scientific opportunities to understand the matter better, and a new chemistry based on electrified interfaces is now emerging.
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Affiliation(s)
- Fernando Galembeck
- Department of Physical Chemistry, University of Campinas, Institute of Chemistry, 13083-872, Campinas, Brazil.
- Galembetech Consultores e Tecnologia, 13080-661, Campinas, Brazil
| | - Leandra P Santos
- Galembetech Consultores e Tecnologia, 13080-661, Campinas, Brazil
| | - Thiago A L Burgo
- Department of Chemistry and Environmental Sciences, São Paulo State University (Unesp), 15054-000, São José do Rio Preto, Brazil
| | - Andre Galembeck
- Department of Fundamental Chemistry, Federal University of Pernambuco, 50740-560, Recife, Brazil
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47
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Sen A, Narsaria AK, Manae MA, Shetty S, Waghmare UV. Electrostatically tunable interaction of CO 2 with MgO surfaces and chemical switching: first-principles theory. Phys Chem Chem Phys 2024; 26:5333-5343. [PMID: 38268468 DOI: 10.1039/d3cp04588a] [Citation(s) in RCA: 0] [Impact Index Per Article: 0] [Reference Citation Analysis] [Abstract] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Indexed: 01/26/2024]
Abstract
Electric field-assisted CO2 capture using solid adsorbents based on basic oxides can immensely reduce the required energy consumption compared to the conventional processes of temperature or pressure swing adsorption. In this work, we present first-principles density functional theoretical calculations to investigate the effects of an applied external electric field (AEEF) within the range from -1 to 1 V Å-1 on the CO2 adsorption behavior on various high and low-index facets of MgO. When CO2 is strongly adsorbed on MgO surfaces to form carbonate species, the coupling of electric fields with the resulting intrinsic dipole moment induces a 'switch' from a strongly chemisorbed state to a weakly chemisorbed or physisorbed state at a critical value of AEEF. We demonstrate that such 'switching' enables access to different metastable states with variations in the AEEF. On polar MgO(111) surfaces, we find a distinct feature of the adsorptive dissociation of CO2 towards the formation of CO in contrast to that on the non-polar MgO(100) and MgO(110) surfaces. In some cases, we observe broken inversion symmetry because of the AEEF that results in induced polarity at the interaction site of CO2 on MgO surfaces. Our results provide fundamental insights into the possibility of using AEEFs in novel solid adsorbent systems for CO2 capture and reduction.
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Affiliation(s)
- Arpita Sen
- Theoretical Sciences Unit, Jawaharlal Nehru Centre for Advanced Scientific Research, Jakkur, Bangalore 560064, India.
| | - Ayush K Narsaria
- Shell India Markets Pvt. Ltd, Mahadeva Kodigehalli, Bengaluru, Karnataka 562149, India.
| | - Meghna A Manae
- Theoretical Sciences Unit, Jawaharlal Nehru Centre for Advanced Scientific Research, Jakkur, Bangalore 560064, India.
| | - Sharan Shetty
- Shell India Markets Pvt. Ltd, Mahadeva Kodigehalli, Bengaluru, Karnataka 562149, India.
| | - Umesh V Waghmare
- Theoretical Sciences Unit, Jawaharlal Nehru Centre for Advanced Scientific Research, Jakkur, Bangalore 560064, India.
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48
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Vichou E, Adjez Y, Li Y, Gómez-Mingot M, Fontecave M, Sánchez-Sánchez CM. Smart Electrode Surfaces by Electrolyte Immobilization for Electrocatalytic CO 2 Conversion. J Am Chem Soc 2024; 146:2824-2834. [PMID: 38240579 DOI: 10.1021/jacs.3c13315] [Citation(s) in RCA: 0] [Impact Index Per Article: 0] [Reference Citation Analysis] [Abstract] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Indexed: 02/01/2024]
Abstract
The activity and selectivity of molecular catalysts for the electrochemical CO2 reduction reaction (CO2RR) are influenced by the induced electric field at the electrode/electrolyte interface. We present here a novel electrolyte immobilization method to control the electric field at this interface by positively charging the electrode surface with an imidazolium cation organic layer, which significantly favors CO2 conversion to formate, suppresses hydrogen evolution reaction, and diminishes the operating cell voltage. Those results are well supported by our previous DFT calculations studying the mechanistic role of imidazolium cations in solution for CO2 reduction to formate catalyzed by a model molecular catalyst. This smart electrode surface concept based on covalent grafting of imidazolium on a carbon electrode is successfully scaled up for operating at industrially relevant conditions (100 mA cm-2) on an imidazolium-modified carbon-based gas diffusion electrode using a flow cell configuration, where the CO2 conversion to formate process takes place in acidic aqueous solution to avoid carbonate formation and is catalyzed by a model molecular Rh complex in solution. The formate production rate reaches a maximum of 4.6 gHCOO- m-2 min-1 after accumulating a total of 9000 C of charge circulated on the same electrode. Constant formate production and no significant microscopic changes on the imidazolium-modified cathode in consecutive long-term CO2 electrolysis confirmed the high stability of the imidazolium organic layer under operating conditions for CO2RR.
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Affiliation(s)
- Elli Vichou
- Laboratoire de Chimie des Processus Biologiques, Collège de France, UMR 8229 CNRS, Sorbonne Université, PSL Research University, 11 Place Marcelin Berthelot, 75005 Paris, France
- Sorbonne Université, CNRS, Laboratoire Interfaces et Systèmes Electrochimiques, LISE, 4 Place Jussieu, 75005 Paris, France
| | - Yanis Adjez
- Sorbonne Université, CNRS, Laboratoire Interfaces et Systèmes Electrochimiques, LISE, 4 Place Jussieu, 75005 Paris, France
| | - Yun Li
- Laboratoire de Chimie des Processus Biologiques, Collège de France, UMR 8229 CNRS, Sorbonne Université, PSL Research University, 11 Place Marcelin Berthelot, 75005 Paris, France
| | - Maria Gómez-Mingot
- Laboratoire de Chimie des Processus Biologiques, Collège de France, UMR 8229 CNRS, Sorbonne Université, PSL Research University, 11 Place Marcelin Berthelot, 75005 Paris, France
| | - Marc Fontecave
- Laboratoire de Chimie des Processus Biologiques, Collège de France, UMR 8229 CNRS, Sorbonne Université, PSL Research University, 11 Place Marcelin Berthelot, 75005 Paris, France
| | - Carlos M Sánchez-Sánchez
- Sorbonne Université, CNRS, Laboratoire Interfaces et Systèmes Electrochimiques, LISE, 4 Place Jussieu, 75005 Paris, France
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49
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Sevim S, Sanchis-Gual R, Franco C, Aragonès AC, Darwish N, Kim D, Picca RA, Nelson BJ, Ruiz E, Pané S, Díez-Pérez I, Puigmartí-Luis J. Electrostatic catalysis of a click reaction in a microfluidic cell. Nat Commun 2024; 15:790. [PMID: 38278792 PMCID: PMC10817948 DOI: 10.1038/s41467-024-44716-2] [Citation(s) in RCA: 0] [Impact Index Per Article: 0] [Reference Citation Analysis] [Abstract] [Key Words] [MESH Headings] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Received: 06/14/2023] [Accepted: 01/02/2024] [Indexed: 01/28/2024] Open
Abstract
Electric fields have been highlighted as a smart reagent in nature's enzymatic machinery, as they can directly trigger or accelerate chemical processes with stereo- and regio-specificity. In enzymatic catalysis, controlled mass transport of chemical species is also key in facilitating the availability of reactants in the active reaction site. However, recent progress in developing a clean catalysis that profits from oriented electric fields is limited to theoretical and experimental studies at the single molecule level, where both the control over mass transport and scalability cannot be tested. Here, we quantify the electrostatic catalysis of a prototypical Huisgen cycloaddition in a large-area electrode surface and directly compare its performance to the conventional Cu(I) catalysis. Our custom-built microfluidic cell enhances reagent transport towards the electrified reactive interface. This continuous-flow microfluidic electrostatic reactor is an example of an electric-field driven platform where clean large-scale electrostatic catalytic processes can be efficiently implemented and regulated.
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Affiliation(s)
- Semih Sevim
- Institute of Robotics and Intelligent Systems, ETH Zurich, Tannenstrasse 3, CH-8092, Zurich, Switzerland
| | - Roger Sanchis-Gual
- Institute of Robotics and Intelligent Systems, ETH Zurich, Tannenstrasse 3, CH-8092, Zurich, Switzerland
| | - Carlos Franco
- Institute of Robotics and Intelligent Systems, ETH Zurich, Tannenstrasse 3, CH-8092, Zurich, Switzerland
| | - Albert C Aragonès
- Departament de Ciència de Materials i Química Física, Institut de Química Teòrica i Computacional, University of Barcelona (UB), Marti i Franquès 1, 08028, Barcelona, Spain
| | - Nadim Darwish
- School of Molecular and Life Sciences, Curtin University, Bentley, 6102, WA, Australia
| | - Donghoon Kim
- Institute of Robotics and Intelligent Systems, ETH Zurich, Tannenstrasse 3, CH-8092, Zurich, Switzerland
| | - Rosaria Anna Picca
- Chemistry Department, University of Bari "Aldo Moro", via E. Orabona 4, 70125, Bari, Italy
| | - Bradley J Nelson
- Institute of Robotics and Intelligent Systems, ETH Zurich, Tannenstrasse 3, CH-8092, Zurich, Switzerland
| | - Eliseo Ruiz
- Departament de Química Inorgànica i Orgànica, Institut de Química Teòrica i Computacional, University of Barcelona (UB), Diagonal 645, 08028, Barcelona, Spain
| | - Salvador Pané
- Institute of Robotics and Intelligent Systems, ETH Zurich, Tannenstrasse 3, CH-8092, Zurich, Switzerland.
| | - Ismael Díez-Pérez
- Department of Chemistry, Faculty of Natural, Mathematical & Engineering Sciences, King's College London, Britannia House, 7 Trinity Street, London, SE1 1DB, UK.
| | - Josep Puigmartí-Luis
- Departament de Ciència de Materials i Química Física, Institut de Química Teòrica i Computacional, University of Barcelona (UB), Marti i Franquès 1, 08028, Barcelona, Spain.
- Institució Catalana de Recerca i Estudis Avançats (ICREA), Pg. Lluís Companys 23, 08010, Barcelona, Spain.
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50
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Spanedda N, Martin C, Mesta K, Chakraborty A. Enhancement of Spontaneous Photon Emission in Inverse Photoemission Transitions in Semiconductor Quantum Dots. J Phys Chem Lett 2024; 15:364-370. [PMID: 38175542 PMCID: PMC10801682 DOI: 10.1021/acs.jpclett.3c02934] [Citation(s) in RCA: 0] [Impact Index Per Article: 0] [Reference Citation Analysis] [Abstract] [Grants] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Received: 10/20/2023] [Revised: 12/13/2023] [Accepted: 12/21/2023] [Indexed: 01/05/2024]
Abstract
Inverse photoemission (IPE) is a radiative electron capture process where an electron is transiently captured in the conduction band (CB) followed by intraband de-excitation and spontaneous photon emission. IPE in quantum dots (QDs) bypasses optical selection rules for populating the CB and provides insights into the capacity for electron capture in the CB, the propensity for spontaneous photon emission, intraband transition energies where both initial and final states are in the CB, and the generation of photons with frequencies lower than the bandgap. Here, we demonstrate using time-dependent perturbation theory that judicious application of electric fields can significantly enhance the IPE transition in QDs. For a series of CdSe, CdS, PbSe, and PbS QDs, we present evidence of field-induced enhancement of IPE intensities (188% for Cd54Se54), field-dependent control of emitted photon frequencies (Δω = 0.73 eV for Cd54Se54), and enhancement of light-matter interaction using directed Stark fields (103% for Cd54Se54).
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Affiliation(s)
- Nicole Spanedda
- Department
of Chemistry, Syracuse University, Syracuse, New York 13244, United States
| | - Chandler Martin
- Department
of Physics, Syracuse University, Syracuse, New York 13244, United States
| | - Kevin Mesta
- Department
of Chemistry, Le Moyne College, Syracuse, New York 13214, United States
| | - Arindam Chakraborty
- Department
of Chemistry, Syracuse University, Syracuse, New York 13244, United States
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