A Hierarchical Self-Assembly System Built Up from Preorganized Tripodal Helical Metal Complexes

Metallosupramolecular polymers formed with silver(i) ions in aqueous solution

Supramolecular polymers of a terpyridine-based ligand (L) at three different concentrations of AgNO3 (0, 0.5, and 1.0 equiv.).

Rotaxane formation by an allosteric pseudomacrocyclic anion receptor utilising kinetically labile copper(i) coordination properties

A pseudomacrocyclic receptor with hydrogen bonding units spontaneously generates a rotaxane with an anionic axle possessing large end groups.

Solvent-dependent fac/mer-isomerization and self-assembly of triply helical complexes bearing a pivot part

Tris-chelate metal complexes of unsymmetrical bidentate ligands can form two geometric stereoisomers, facial (fac) and meridional (mer) isomers. Due to the small difference in their properties, the highly-selective synthesis of one of the isomers is challenging. We now designed a series of tripodal ligands with a tris(3-(2-(methyleneoxy)ethoxy)phenyl)methane pivot. Surprisingly, the ratio of the fac/mer isomers of the triply helical Fe^II complexes significantly changed depending on the solvents. To the best of our knowledge, this is the first example of fac/mer isomerism of a labile tris(2,2'-bipyridine) Fe^II complex governed by the solvent. Furthermore, well-defined self-assemblies were quantitatively produced by imine bond formation with a suitable diamine. The supramolecular assemblies contained only the fac isomer even though a mixture of the two isomers existed in solution before the condensation reaction. Namely, the self-assembly formation effectively adjusted the geometries of the building unit that results in the suitable supramolecular structure.

Exclusive formation of a meridional complex of a tripodand and perfect suppression of guest recognition

Tripodal ligands have been utilized for complexation-induced structural change, but all the tripodal complexes reported so far are facial isomers, which do not completely reduce the recognition ability by closing the binding pocket. We now report the first example of the selective synthesis of a meridional tripodal complex. The tripodal ligand with a 1,3,5-triethyl-2,4,6-tris(methylene)benzene pivot possessing 2,2'-bipyridine on each arm exclusively formed a mononuclear complex with the mer-[Fe(bpy)]2+ unit. The meridional tripodal complex has a unique structure in which one bipyridine unit is self-penetrated. As a result of cavity blockage, the ion recognition property of the tripodand has been successfully suppressed.

Metallohelices emulate the properties of short cationic α-helical peptides

Naturally occurring peptides in many living systems perform antimicrobial and anticancer host defence roles, but their potential for clinical application is limited by low metabolic stability and relatively high costs of goods. Self-assembled helical metal complexes provide an attractive synthetic platform for non-peptidic architectures that can emulate some of the properties of short cationic α-helical peptides, with tuneable charge, shape, size and amphipathicity. Correspondingly there is a growing body of evidence demonstrating that these supramolecular architectures exhibit bioactivity that emulates that of the natural systems. We review that evidence in the context of synthetic advances in the area, driven by the potential for biomedical applications. We note some design considerations for new biologically-relevant metallohelices, and give our outlook on the future of these compounds as therapeutic peptidomimetics.

Self-Assembly by Tridentate or Bidentate Ligand: Synthesis and Vapor Adsorption Properties of Cu(II), Zn(II), Hg(II) and Cd(II) Complexes Derived from a Bis(pyridylhydrazone) Compound

Four complexes, [Cu₄L₂(OCH₃)₂(CH₃OH)₂]·2H₂O (1), [Zn₂L₂Cl₄]·2H₂O·2CH₃OH (2), [Hg₂L₂Br₄]·4CH₃OH (3), and {[CdL₂Cl₂]·4H₂O·4CH₃OH}_n (4), have been synthesized and characterized from a bis(pyridylhydrazone) ligand (L) with copper(II), zinc(II), mercury(II) or cadmium(II), respectively. Complex 1 exists as a centrosymmetric tetranuclear dimer with L as deprotonated tridentate ligand. Complexes 2 and 3 exist as centrosymmetric metallamacrocycles with L as bidentate ligand. Complex 4 exists as a 1D looped-chain coordination polymer. The thermal stabilities and vapor adsorption properties of the four complexes were investigated as well.

Monitoring the Hierarchical Evolution from a Double-Stranded Helix to a Well-Defined Microscopic Morphology Based on a Turbine-like Aromatic Molecule

1H-Indazolo[1,2-b]phthalazine-5,10-dione IPDD with an approximate turbine-like spatial structure, primary assembled double-stranded helices at the first level, was predicted by quantum chemical calculations and confirmed by atomic force microscopy. The higher-dimensional hierarchical architectures including fibrils, helical fibers, spherical shells, and porous prismatic structures were observed in sequence by the scanning electron microscopy technique. The final porous prismatic structures sensitive to NH₃ vapors have the potential to be applied in gas sensing and absorbing materials.

Bispicolyamine-Based Supramolecular Polymeric Gels Induced by Distinct Different Driving Forces with and Without Zn2

Metal-coordination polymeric gels are interesting areas as organic/inorganic hybrid supramolecular materials. The bispicolylamine (BPA) based gelator (1) showed excellent gelation with typical fibrillar morphology in acetonitrile. Upon complexing 1 with Zn²⁺, complexes ([1 + Zn + ACN]²⁺ and [1 + zinc trifluoromethanesulfonate (ZnOTf)]⁺) with four coordination numbers were formed, which determine the gel structure significantly. A gel-sol transition was induced, driven by the ratio of the two metal complexes produced. Through nuclear magnetic resonance analysis, the driving forces in the gel formation (i.e., hydrogen-bonding and π-π stacking) were observed in detail. In the absence and the presence of Zn²⁺, the intermolecular hydrogen-bonds and π-π stacking were the primary driving forces in the gel formation, respectively. In addition, the supramolecular gels exhibited a monolayer lamellar structure irrespective of Zn²⁺. Conclusively, the gels' elasticity and viscosity reduced in the presence of Zn²⁺.

Lighting up metallohelices: from DNA binders to chemotherapy and photodynamic therapy

The design of novel agents that specifically target DNA and interrupt its normal biological processes is an attractive goal in drug design. Among the promising metallodrugs, metal-directed self-assembled metallohelices with defined three-dimensional stereochemical structures display unique structure-inherent and unprecedented noncovalent targeting abilities towards DNA, resulting in excellent anticancer or antibiotic activities. A newly burgeoning hotspot is focusing on lighting them up by embedding luminescent metal ions as the vertices. The photoactive metallohelices that combine strong interactions toward DNA targets and efficient ¹O₂ quantum yield may provide new motivation in diagnostic and photodynamic therapy (PDT) areas. This perspective focuses on research progress on metallohelices as DNA binders and chemotherapeutic agents, and highlights recent advances in fabricating luminescent examples for PDT. The relative assembly strategies are also discussed and compared. Finally, perspectives on the future development of the lit-up metallohelices are presented.

Kinetically controlled Ag+-coordinated chiral supramolecular polymerization accompanying a helical inversion

We report kinetically controlled chiral supramolecular polymerization based on ligand-metal complex with a 3 : 2 (L : Ag+) stoichiometry accompanying a helical inversion in water. A new family of bipyridine-based ligands (d-L1, l-L1, d-L2, and d-L3) possessing hydrazine and d- or l-alanine moieties at the alkyl chain groups has been designed and synthesized. Interestingly, upon addition of AgNO3 (0.5-1.3 equiv.) to the d-L1 solution, it generated the aggregate I composed of the d-L1AgNO3 complex (d-L1 : Ag+ = 1 : 1) as the kinetic product with a spherical structure. Then, aggregate I (nanoparticle) was transformed into the aggregate II (supramolecular polymer) based on the (d-L1)3Ag2(NO3)2 complex as the thermodynamic product with a fiber structure, which led to the helical inversion from the left-handed (M-type) to the right-handed (P-type) helicity accompanying CD amplification. In contrast, the spherical aggregate I (nanoparticle) composed of the d-L1AgNO3 complex with the left-handed (M-type) helicity formed in the presence of 2.0 equiv. of AgNO3 and was not additionally changed, which indicated that it was the thermodynamic product. The chiral supramolecular polymer based on (d-L1)3Ag2(NO3)2 was produced via a nucleation-elongation mechanism with a cooperative pathway. In thermodynamic study, the standard ΔG° and ΔH e values for the aggregates I and II were calculated using the van't Hoff plot. The enhanced ΔG° value of the aggregate II compared to that of the formation of aggregate I confirms that aggregate II was thermodynamically more stable. In the kinetic study, the influence of concentration of AgNO3 confirmed the initial formation of the aggregate I (nanoparticle), which then evolved to the aggregate II (supramolecular polymer). Thus, the concentration of the (d-L1)3Ag2(NO3)2 complex in the initial state plays a critical role in generating aggregate II (supramolecular polymer). In particular, NO3 - acts as a critical linker and accelerator in the transformation from the aggregate I to the aggregate II. This is the first example of a system for a kinetically controlled chiral supramolecular polymer that is formed via multiple steps with coordination structural change.

Compartmentalization of Alkaline-Earth Metals in Salen-Type Cu- and Ni-Complexes in Solution and in the Solid State

The precise arrangement of metal ions in type and number by a ligand represents an important challenge in biology as well as in materials science. The preorganization of different metal ions such as alkaline-earth and transition-metal ions is of particular interest for the design of catalysts or precursors of oxides. This study is based on a Ω-shaped salen-derived ligand comprising N2O2 and O2O2 coordination sites. The selective binding of Cu(II) and Ni(II) and alkaline-earth-metal ions is influenced by many factors such as the size of the cation, the solvent, or the counterion. UV-vis and 1H NMR titrations and single-crystal X-ray structures reveal that the obtained complexes tend to adopt different structures in solution compared to the solid state. Mainly discrete motifs with a stoichiometry 1:1 (LM1 to alkaline-earth-metal ions) have been shown to form in the solid state, whereas in solution, the 2:1 complexes are predominant.

Chirality in rotaxanes and catenanes

Although chiral mechanically interlocked molecules (MIMs) have been synthesised and studied, enantiopure examples are relatively under-represented in the pantheon of reported catenanes and rotaxanes and the underlying chirality of the system is often even overlooked. This is changing with the advent of new applications of MIMs in catalysis, sensing and materials and the appearance of new methods to access unusual stereogenic units unique to the mechanical bond. Here we discuss the different stereogenic units that have been investigated in catenanes and rotaxanes, examples of their application, methods for assigning absolute stereochemistry and provide a perspective on future developments.

Site-selective anion recognition of an interlocked dimer

Interlocked dimer 2, which is composed of two physically interlocked monomers 1, has three cavities (cavity A × 2 and cavity B × 1) and can encapsulate three anions, such as NO₃^- and BF₄^-, one anion per cavity. There are six possible encapsulation patterns, A-F; two (A and F) contain only one kind of anion and the others (B-E) contain both NO₃^- and BF₄^- at the same time with different ratios and with different positions. Anion competition experiments showed that in addition to F, which encapsulates three NO₃^- ions, C, in which NO₃^- and BF₄^- ions are captured in cavities A and cavity B, respectively, was selectively formed. Detailed investigations have revealed that B-E were formed by dimerization, but three of the four were subjected to anion exchange and converged into C or F. This selective formation can be explained by the fact that NO₃^- is a better anion template than BF₄^-, as well as the molecular structure of the interlocked dimer; cavities A are surrounded by four bridging ligands and can be accessed by free anions, whereas no space available for anion exchange is present around cavity B because this cavity is surrounded by eight bridging ligands. Therefore, the BF₄^- ions in cavities A are expelled by free NO₃^-, but the BF₄^- ion in cavity B is not, resulting in the selection of C and F. We have found that the volume of the cavity influenced anion recognition. New interlocked dimer 3, which has smaller cavities than those of 2, captured three NO₃^- ions to form F, whereas only a small amount of an interlocked dimer that contains both NO₃^- and BF₄^- was formed.

Transmetalation for Flexible Pendant-Armed Schiff-Base Macrocyclic Complexes Influenced by Halide Effects

Three 46-membered [2 + 2] pendant-armed Schiff-base macrocyclic dinuclear Cd^II and Cu^II complexes (2a, 2b, and 3b) and one 23-membered [1 + 1] Cu^II macrocycle 4a were prepared from the template-directed condensation reactions between 1,2-bis(2-aminoethoxy)-ethane and extended Cl-dialdehyde in the presence of CdX₂ and CuX₂ (X = Cl and Br), in which halide effects play important roles in the organization of final macrocyclic complexes in addition to the dominant influence of metal cations. Transmetalation was intensively studied among these Cd^II and Cu^II complexes with large and flexible macrocyclic ligands, including two previously synthesized dinuclear Zn^II macrocycles (1a and 1b). Our results indicate that Zn^II → Cu^II and Cd^II → Cu^II transmetalation proceeds more quickly than that from Cd^II to Zn^II, and all the processes are found to be irreversible. It is noted that a [2 + 2] heterodinuclear Cd^IIZn^II macrocyclic intermediate could be detected by ESI-MS together with [2 + 2] homodinuclear Cd^II and Zn^II macrocyclic complexes. Furthermore, distinct halide behavior was observed in the in situ Cd^II → Cu^II and Zn^II → Cu^II metal-ion exchange. That is to say, [2 + 2] macrocycles (1a and 2a) could be converted to [1 + 1] macrocycles 4a and 4b under the reflux condition in the case of CuCl₂, accompanied by the configurational transformation from half-folded dinuclear Zn^II and Cd^II to unfolded Cu^II macrocyclic skeleton. In contrast, CuBr₂ leads to a highly efficient transmetalation to corresponding [2 + 2] dinuclear Cu^II complex 3b from both 1b and 2b no matter the experimental condition used.

Origin of Both Right- and Left-Handed Helicities in a Supramolecular Gel with and without Ni2+ at the Supramolecular Level

We demonstrate the different origins of helical directions in polymeric gels derived from a hydrazone reaction in the absence and presence of Ni²⁺. The right-handed helicity of polymeric gels without Ni²⁺ originates from the enantiomeric d-form alanine moiety embedded in the building block. However, the right-handed helicity is inverted to a left-handed helicity upon the addition of Ni²⁺, indicating that added Ni²⁺ greatly affects the conformation of the polymeric gel by overcoming the influence of the enantiomer embedded in the building block on the helicity at the supramolecular level. More interestingly, the ratio of the right-toleft-handed helical fibers varies with the concentration of Ni²⁺, which converts from 100% right-handed helical fiber to 90% left-handed helical fiber. In the presence of Ni²⁺, both right- and left-handed helical fibers coexist at the supramolecular level. Some fibers also exhibit both right- and left-handed helicities in a single fiber.

Terpyridine-based metallo-organic cages and supramolecular gelation by coordination-driven self-assembly and host–guest interaction

Dimetallo-cages connected with dialkylammonium salts via host–guest interactions resulted in thermodynamic polymer metallo-gels.

Molecular recognition by multiple metal coordination inside wavy-stacked macrocycles

Most biological and synthetic receptors for small organic molecules employ a combination of relatively weak intermolecular interactions such as hydrogen bonds. A host compound that utilizes stronger yet reversible bonding in a synergistic manner could realize precise recognition, but the regulation and spatial arrangement of such reactive interaction moieties have been a challenge. Here, we show a multinuclear zinc complex synthesized from a macrocyclic ligand hexapap, which inwardly arranges labile metal coordination sites for external molecules. The metallomacrocycle forms a unique wavy-stacked structure upon binding a suitable length of dicarboxylic acids via multipoint coordination bonding. The saddle-shaped deformation and dimerization realize the differentiation of the interaction moieties, and change of guest-binding modes at specific metal coordination sites among the many present have been achieved utilizing acid/base as external stimuli.

Synergistic use of coordination bonds that are strong and reversible realizes unique molecular recognition in artificial systems. Here, the authors show that a zinc-based metallomacrocyle can bind dicarboxylic acids of suitable length at specific metal sites by shape deformation and dimerization.

Supramolecular Double-Helix Formation by Diastereoisomeric Conformations of Configurationally Enantiomeric Macrocycles

Solid-state superstructures, resulting from assemblies programmed by homochirality, are attracting considerable attention. In addition, artificial double-helical architectures are being investigated, especially in relation to the ways in which homochiral small molecules can be induced to yield helical forms as a result of chiral induction. Herein, we report the highly specific self-assembly upon crystallization of a double-helical superstructure from an enantiopure macrocyclic dimer which adopts two diastereoisomeric conformations in a molar ratio of 1.5:1 in dimethyl sulfoxide. These two conformational diastereoisomers self-organize-and self-sort-in the crystalline phase in equimolar proportions to form two single-handed helices which are complementary to each other, giving rise to the assembly of a double helix that is stabilized by intermolecular [C-H···O] and π-π stacking interactions. The observed self-sorting phenomenon occurs on going from a mixed-solvent system containing two equilibrating conformational diastereoisomers, presumably present in unequal molar proportions, into the solid state. The diastereoisomeric conformations are captured upon crystallization in a 1:1 molar ratio in the double-helical superstructure, whose handedness is dictated by the choice of the enantiomeric macrocyclic dimer. The interconversion of the two conformational diastereoisomers derived from each configurationally enantiomeric macrocycle was investigated in CD₃SOCD₃ solution by variable-temperature ¹H NMR spectroscopy (VT NMR) and circular dichroism (VT CD). The merging of the resonances for the protons corresponding to the two diastereoisomers at a range of coalescence temperatures in the VT NMR spectra and occurrence of the isosbestic points in the VT CD spectra indicate that the two diastereoisomers are interconverting slowly in solution on the ¹H NMR time scale but rapidly on the laboratory time scale. To the best of our knowledge, the self-assembly of such solid-state superstructures from two conformational diastereoisomers of a homochiral macrocycle is a rare, if not unique, occurrence.

Allostery in molecular self-assemblies: metal ions triggered self-assembly and emissions of terthiophene

Allostery in molecular self-assembly: binding of Ag⁺ to the head of a coordinating amphiphile TTC4L changes the emission color of the terthiophene group attached to the chain end via a conformation triggered self-assembly.