1
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Geng C, Su Y, Kong D, Yang Z, Li J, Cai J, Dai F, Song C, Wu X. Zeeman torque sampling of intense terahertz magnetic field in CoFe. OPTICS LETTERS 2024; 49:4589-4592. [PMID: 39146110 DOI: 10.1364/ol.532571] [Citation(s) in RCA: 0] [Impact Index Per Article: 0] [Reference Citation Analysis] [Abstract] [Track Full Text] [Subscribe] [Scholar Register] [Received: 06/18/2024] [Accepted: 07/25/2024] [Indexed: 08/17/2024]
Abstract
Free-space strong-field terahertz (THz) electromagnetic pulses have emerged as a potent tool for non-equilibrium quantum state control. However, these applications predominantly rely on electric field components, with limited utilization of magnetic field components. A traditional electro-optical sampling technique may encounter constraints due to the field strength saturation effect when detecting strong-field THz pulses. Here we have identified intense THz-induced Zeeman torque signals in CoFe and successfully detected the THz magnetic field components. Through variations in the type of ferromagnetic materials and the thickness of ferromagnetic films, we further refined the detection of THz magnetic field components. Our research revealed that a 15-nm CoFe thin film is more responsive in measuring magnetic field components.
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2
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Zhang Q, Yang L, Wang K, Guo L, Ning H, Wang S, Gong Y. Terahertz waves regulate the mechanical unfolding of tau pre-mRNA hairpins. iScience 2023; 26:107572. [PMID: 37664616 PMCID: PMC10470126 DOI: 10.1016/j.isci.2023.107572] [Citation(s) in RCA: 0] [Impact Index Per Article: 0] [Reference Citation Analysis] [Abstract] [Key Words] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Received: 03/15/2023] [Revised: 07/14/2023] [Accepted: 08/05/2023] [Indexed: 09/05/2023] Open
Abstract
Intermolecular interactions, including hydrogen bonds, dominate the pairing and unpairing of nucleic acid chains in the transfer process of genetic information. The energy of THz waves just matches with the weak interactions, so THz waves may interact with biomolecules. Here, the dynamic effects of THz electromagnetic (EM) waves on the mechanical unfolding process of RNA hairpins (WT-30nt and its mutants, rHP, SARS-CoV-2, and SRV-1 SF206) are investigated using steered molecular dynamics (SMD) simulations. The results show that THz waves can either promote the unfolding of the double helix of the RNA hairpin during the initial unfolding phase (4-21.8 THz) or significantly enhance (23.8 and 25.5 THz) or weaken (37.4 and 41.2 THz) its structural stability during unfolding. Our findings have important implications for applying THz waves to regulate dynamic deconvolution processes, such as gene replication, transcription, and translation.
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Affiliation(s)
- Qin Zhang
- School of Electronic Science and Engineering, University of Electronic Science and Technology of China, Chengdu, Sichuan 611731, China
| | - Lixia Yang
- School of Physics, University of Electronic Science and Technology of China, Chengdu, Sichuan 611731, China
| | - Kaicheng Wang
- School of Electronic Science and Engineering, University of Electronic Science and Technology of China, Chengdu, Sichuan 611731, China
| | - Lianghao Guo
- School of Electronic Science and Engineering, University of Electronic Science and Technology of China, Chengdu, Sichuan 611731, China
| | - Hui Ning
- School of Electronic Science and Engineering, University of Electronic Science and Technology of China, Chengdu, Sichuan 611731, China
| | - Shaomeng Wang
- School of Electronic Science and Engineering, University of Electronic Science and Technology of China, Chengdu, Sichuan 611731, China
| | - Yubin Gong
- School of Electronic Science and Engineering, University of Electronic Science and Technology of China, Chengdu, Sichuan 611731, China
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3
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Wu X, Kong D, Hao S, Zeng Y, Yu X, Zhang B, Dai M, Liu S, Wang J, Ren Z, Chen S, Sang J, Wang K, Zhang D, Liu Z, Gui J, Yang X, Xu Y, Leng Y, Li Y, Song L, Tian Y, Li R. Generation of 13.9-mJ Terahertz Radiation from Lithium Niobate Materials. ADVANCED MATERIALS (DEERFIELD BEACH, FLA.) 2023; 35:e2208947. [PMID: 36932897 DOI: 10.1002/adma.202208947] [Citation(s) in RCA: 5] [Impact Index Per Article: 5.0] [Reference Citation Analysis] [Abstract] [Key Words] [Grants] [Track Full Text] [Subscribe] [Scholar Register] [Received: 09/28/2022] [Revised: 03/12/2023] [Indexed: 06/09/2023]
Abstract
Extremely strong-field terahertz (THz) radiation in free space has compelling applications in nonequilibrium condensed matter state regulation, all-optical THz electron acceleration and manipulation, THz biological effects, etc. However, these practical applications are constrained by the absence of high-intensity, high-efficiency, high-beam-quality, and stable solid-state THz light sources. Here, the generation of single-cycle 13.9-mJ extreme THz pulses from cryogenically cooled lithium niobate crystals and a 1.2% energy conversion efficiency from 800 nm to THz are demonstrated experimentally using the tilted pulse-front technique driven by a home-built 30-fs, 1.2-Joule Ti:sapphire laser amplifier. The focused peak electric field strength is estimated to be 7.5 MV cm-1 . A record of 1.1-mJ THz single-pulse energy at a 450 mJ pump at room temperature is produced and observed that the self-phase modulation of the optical pump can induce THz saturation behavior from the crystals in the substantially nonlinear pump regime. This study lays the foundation for the generation of sub-Joule THz radiation from lithium niobate crystals and will inspire more innovations in extreme THz science and applications.
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Affiliation(s)
- Xiaojun Wu
- School of Electronic and Information Engineering, and School of Cyber Science and Technology, Beihang University, Beijing, 100191, China
- Zhangjiang Laboratory, 100 Haike Road, Shanghai, 201210, China
- Wuhan National Laboratory for Optoelectronics, Huazhong University of Science and Technology, Wuhan, 430074, China
| | - Deyin Kong
- School of Electronic and Information Engineering, and School of Cyber Science and Technology, Beihang University, Beijing, 100191, China
- Zhangjiang Laboratory, 100 Haike Road, Shanghai, 201210, China
| | - Sibo Hao
- School of Electronic and Information Engineering, and School of Cyber Science and Technology, Beihang University, Beijing, 100191, China
| | - Yushan Zeng
- State Key Laboratory of High Field Laser Physics and CAS Center for Excellence in Ultra-intense Laser Science, Shanghai Institute of Optics and Fine Mechanics, Chinese Academy of Sciences, Shanghai, 201800, China
| | - Xieqiu Yu
- State Key Laboratory of High Field Laser Physics and CAS Center for Excellence in Ultra-intense Laser Science, Shanghai Institute of Optics and Fine Mechanics, Chinese Academy of Sciences, Shanghai, 201800, China
| | - Baolong Zhang
- Beijing National Laboratory for Condensed Matter Physics, Institute of Physics, Chinese Academy of Sciences, Beijing, 100190, China
| | - Mingcong Dai
- School of Electronic and Information Engineering, and School of Cyber Science and Technology, Beihang University, Beijing, 100191, China
| | - Shaojie Liu
- School of Electronic and Information Engineering, and School of Cyber Science and Technology, Beihang University, Beijing, 100191, China
| | - Jiaqi Wang
- School of Electronic and Information Engineering, and School of Cyber Science and Technology, Beihang University, Beijing, 100191, China
| | - Zejun Ren
- School of Electronic and Information Engineering, and School of Cyber Science and Technology, Beihang University, Beijing, 100191, China
| | - Sai Chen
- School of Electronic and Information Engineering, and School of Cyber Science and Technology, Beihang University, Beijing, 100191, China
| | - Jianhua Sang
- State Key Laboratory of High Field Laser Physics and CAS Center for Excellence in Ultra-intense Laser Science, Shanghai Institute of Optics and Fine Mechanics, Chinese Academy of Sciences, Shanghai, 201800, China
| | - Kang Wang
- State Key Laboratory of High Field Laser Physics and CAS Center for Excellence in Ultra-intense Laser Science, Shanghai Institute of Optics and Fine Mechanics, Chinese Academy of Sciences, Shanghai, 201800, China
| | - Dongdong Zhang
- State Key Laboratory of High Field Laser Physics and CAS Center for Excellence in Ultra-intense Laser Science, Shanghai Institute of Optics and Fine Mechanics, Chinese Academy of Sciences, Shanghai, 201800, China
| | - Zhongkai Liu
- School of Physical Science and Technology, ShanghaiTech University, Shanghai, 201210, China
- ShanghaiTech Laboratory for Topological Physics, Shanghai, 201210, China
| | - Jiayan Gui
- State Key Laboratory of High Field Laser Physics and CAS Center for Excellence in Ultra-intense Laser Science, Shanghai Institute of Optics and Fine Mechanics, Chinese Academy of Sciences, Shanghai, 201800, China
| | - Xiaojun Yang
- State Key Laboratory of High Field Laser Physics and CAS Center for Excellence in Ultra-intense Laser Science, Shanghai Institute of Optics and Fine Mechanics, Chinese Academy of Sciences, Shanghai, 201800, China
| | - Yi Xu
- State Key Laboratory of High Field Laser Physics and CAS Center for Excellence in Ultra-intense Laser Science, Shanghai Institute of Optics and Fine Mechanics, Chinese Academy of Sciences, Shanghai, 201800, China
| | - Yuxin Leng
- State Key Laboratory of High Field Laser Physics and CAS Center for Excellence in Ultra-intense Laser Science, Shanghai Institute of Optics and Fine Mechanics, Chinese Academy of Sciences, Shanghai, 201800, China
| | - Yutong Li
- Beijing National Laboratory for Condensed Matter Physics, Institute of Physics, Chinese Academy of Sciences, Beijing, 100190, China
| | - Liwei Song
- State Key Laboratory of High Field Laser Physics and CAS Center for Excellence in Ultra-intense Laser Science, Shanghai Institute of Optics and Fine Mechanics, Chinese Academy of Sciences, Shanghai, 201800, China
| | - Ye Tian
- State Key Laboratory of High Field Laser Physics and CAS Center for Excellence in Ultra-intense Laser Science, Shanghai Institute of Optics and Fine Mechanics, Chinese Academy of Sciences, Shanghai, 201800, China
| | - Ruxin Li
- State Key Laboratory of High Field Laser Physics and CAS Center for Excellence in Ultra-intense Laser Science, Shanghai Institute of Optics and Fine Mechanics, Chinese Academy of Sciences, Shanghai, 201800, China
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4
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Meziadi A, Greschner AA, Gauthier MA. Microwave-Induced Transient Heating Accelerates Protein PEGylation. Biomacromolecules 2023. [PMID: 37130073 DOI: 10.1021/acs.biomac.3c00250] [Citation(s) in RCA: 0] [Impact Index Per Article: 0] [Reference Citation Analysis] [Abstract] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Indexed: 05/03/2023]
Abstract
PEGylation is one of the most widely employed strategies to increase the circulatory half-life of proteins and to reduce immune responses. However, conventional PEGylation protocols often require excess reagents and extended reaction times because of their inefficiency. This study demonstrates that a microwave-induced transient heating phenomenon can be exploited to significantly accelerate protein PEGylation and even increase the degree of PEGylation achievable beyond what is possible at room temperature. This can be accomplished under conditions that do not compromise protein integrity. Several PEGylation chemistries and proteins are tested, and mechanistic insight is provided. Under certain conditions, extremely high levels of PEGylation were achieved in a matter of minutes. Moreover, considering the significantly reduced reaction times, the microwave-induced transient heating concept was adapted for continuous flow manufacturing of bioconjugates.
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Affiliation(s)
- Ahlem Meziadi
- Institut National de la Recherche Scientifique (INRS), EMT Research Center, 1650 boul. Lionel-Boulet, Varennes, Quebec J3X 1P7, Canada
| | - Andrea A Greschner
- Institut National de la Recherche Scientifique (INRS), EMT Research Center, 1650 boul. Lionel-Boulet, Varennes, Quebec J3X 1P7, Canada
| | - Marc A Gauthier
- Institut National de la Recherche Scientifique (INRS), EMT Research Center, 1650 boul. Lionel-Boulet, Varennes, Quebec J3X 1P7, Canada
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5
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Li N, Zhang F. THz-PCR Based on Resonant Coupling between Middle Infrared and DNA Carbonyl Vibrations. ACS APPLIED MATERIALS & INTERFACES 2023; 15:8224-8231. [PMID: 36724344 DOI: 10.1021/acsami.2c22413] [Citation(s) in RCA: 0] [Impact Index Per Article: 0] [Reference Citation Analysis] [Abstract] [Key Words] [MESH Headings] [Track Full Text] [Subscribe] [Scholar Register] [Indexed: 06/18/2023]
Abstract
The carbonyl groups of deoxyribonucleotide can resonantly couple with 53 THz middle infrared, which can highly transmit water without ionization-based damage to DNA molecules. Herein, we predict that vibrational coupling with THz irradiation could lower down the hybridization landscape of nucleic acids and thus affect DNA replication. Using polymerase chain reaction (PCR) as a measure, we found that THz shining can reduce the denature temperature of DNA duplexes by about 3 °C, which allows one to conduct PCR at lower temperature, facilitating long-time amplification reaction without losing enzymatic fidelity, i.e., normal PCR should be carried out at denaturing temperature ∼4 °C higher than the melting temperature (Tm), but THz-PCR only requires temperature ∼1 °C higher than Tm due to the nonthermal effect of THz shining. Moreover, the melting time can also be shortened to 1/5 due to the enhanced vibration coupling with 53 THz irradiation. We proposed THz-PCR as an innovated DNA amplification technique with ultrahigh specificity and sensitivity and also successfully demonstrated its advantages in forensic detections.
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Affiliation(s)
- Na Li
- Quantum Biophotonic Lab, Key Laboratory of Optical Technology and Instrument for Medicine, Ministry of Education, School of Optical-Electrical and Computer Engineering, University of Shanghai for Science and Technology, Shanghai 200093, China
| | - Feng Zhang
- Quantum Biophotonic Lab, Key Laboratory of Optical Technology and Instrument for Medicine, Ministry of Education, School of Optical-Electrical and Computer Engineering, University of Shanghai for Science and Technology, Shanghai 200093, China
- Wenzhou Institute, University of Chinese Academy of Sciences, Wenzhou 325001, China
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6
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Sebastian A, Lipa D, Ptasinska S. DNA Strand Breaks and Denaturation as Probes of Chemical Reactivity versus Thermal Effects of Atmospheric Pressure Plasma Jets. ACS OMEGA 2023; 8:1663-1670. [PMID: 36643434 PMCID: PMC9835636 DOI: 10.1021/acsomega.2c07262] [Citation(s) in RCA: 0] [Impact Index Per Article: 0] [Reference Citation Analysis] [Abstract] [Grants] [Track Full Text] [Download PDF] [Figures] [Subscribe] [Scholar Register] [Received: 11/11/2022] [Accepted: 12/19/2022] [Indexed: 06/17/2023]
Abstract
An atmospheric pressure plasma jet (APPJ) is being advanced as an alternative radiation type that offers excellent efficacy in an array of medical applications against specific biological targets such as DNA. This work explores the possibility of implementing DNA and its damage as a probe for specific plasma diagnostics such as reactive plasma species formation and transient local heating. We analyzed both APPJ characteristics based on the detection of plasma-induced strand breaks and DNA denaturation. Further, we implemented a machine learning model based on artificial neural networks to predict the type and extent of DNA damage for a given combination of APPJ parameter values. This methodology is an important step toward deciphering and explaining the potential adverse effects of APPJ on biological samples of any prospective interest in medicine.
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Affiliation(s)
- Amal Sebastian
- Radiation
Laboratory, University of Notre Dame, Notre Dame, Indiana 46556, United States
- Department
of Physics and Astronomy, University of
Notre Dame, Notre Dame, Indiana 46556, United States
| | - Daniel Lipa
- Radiation
Laboratory, University of Notre Dame, Notre Dame, Indiana 46556, United States
- Department
of Applied and Computational Mathematics and Statistics, University of Notre Dame, Notre Dame, Indiana 46556, United States
| | - Sylwia Ptasinska
- Radiation
Laboratory, University of Notre Dame, Notre Dame, Indiana 46556, United States
- Department
of Physics and Astronomy, University of
Notre Dame, Notre Dame, Indiana 46556, United States
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7
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Jiao X, Chen W, Fan D. Behind the Veil: A multidisciplinary discussion on protein–microwave interactions. Curr Opin Food Sci 2022. [DOI: 10.1016/j.cofs.2022.100936] [Citation(s) in RCA: 0] [Impact Index Per Article: 0] [Reference Citation Analysis] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Indexed: 11/25/2022]
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8
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Xiong H, Sun H, Zhou J, Li H, Zhang H, Liu S, Cai J, Feng L, Miao J, Chen S, Wu X. Terahertz anisotropy in fascia and lean meat tissues. BIOMEDICAL OPTICS EXPRESS 2022; 13:2605-2615. [PMID: 35774311 PMCID: PMC9203107 DOI: 10.1364/boe.454338] [Citation(s) in RCA: 1] [Impact Index Per Article: 0.5] [Reference Citation Analysis] [Abstract] [Track Full Text] [Subscribe] [Scholar Register] [Received: 01/20/2022] [Revised: 03/22/2022] [Accepted: 03/23/2022] [Indexed: 06/15/2023]
Abstract
Terahertz (THz) spectroscopy provides multifaceted capabilities for observing low-energy responses of macromolecules, cells and tissues, understanding THz biophysical effects, and expecting to realize the application of THz technology in biomedicine. However, its high-frequency characteristics of limited penetration depth and strong absorption of water in the body comparable to microwaves are impeding the proliferation of THz spectroscopy. Here we show that THz spectroscopy makes possible the observation of THz anisotropy phenomena for the first time in fascia and lean tissue. Through optical microscopy, we infer that the microscopic mechanism of THz anisotropy comes from the periodic stripe structure of the biological tissue. The above related experimental findings may be expected to promote the application of THz technology in biomedicine.
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Affiliation(s)
- Hongting Xiong
- School of Electronic and Information Engineering, Beihang University, 37 Xueyuan Road, Beijing 100191, China
| | - Hongyan Sun
- School of Mechanical Engineering and Automation, Beihang University (Shahe Campus), 9 Nansan Street, Shahe Higher Education Park, Changping, Beijing 102206, China
| | - Jiangping Zhou
- School of Electronic and Information Engineering, Beihang University, 37 Xueyuan Road, Beijing 100191, China
| | - Haotian Li
- SHENYUAN Honors College, Beihang University, 37 Xueyuan Road, Beijing, 100191, China
| | - Hao Zhang
- SHENYUAN Honors College, Beihang University, 37 Xueyuan Road, Beijing, 100191, China
| | - Shaojie Liu
- School of Cyber Science and Technology, Beihang University, 37 Xueyuan Road, Beijing 100191, China
| | - Jiahua Cai
- School of Electronic and Information Engineering, Beihang University, 37 Xueyuan Road, Beijing 100191, China
| | - Lin Feng
- School of Mechanical Engineering and Automation, Beihang University (Shahe Campus), 9 Nansan Street, Shahe Higher Education Park, Changping, Beijing 102206, China
| | - Jungang Miao
- School of Electronic and Information Engineering, Beihang University, 37 Xueyuan Road, Beijing 100191, China
| | - Sai Chen
- School of Electronic and Information Engineering, Beihang University, 37 Xueyuan Road, Beijing 100191, China
| | - Xiaojun Wu
- School of Electronic and Information Engineering, Beihang University, 37 Xueyuan Road, Beijing 100191, China
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9
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Cai J, Guang M, Zhou J, Qu Y, Xu H, Sun Y, Xiong H, Liu S, Chen X, Jin J, Wu X. Dental caries diagnosis using terahertz spectroscopy and birefringence. OPTICS EXPRESS 2022; 30:13134-13147. [PMID: 35472935 DOI: 10.1364/oe.452769] [Citation(s) in RCA: 6] [Impact Index Per Article: 3.0] [Reference Citation Analysis] [Abstract] [MESH Headings] [Track Full Text] [Subscribe] [Scholar Register] [Received: 12/31/2021] [Accepted: 03/28/2022] [Indexed: 06/14/2023]
Abstract
Dental caries is a widespread chronic infectious disease which may induce a series of oral and general problems if untreated. As a result, early diagnosis and follow-up following radiation-free dental caries therapy are critical. Terahertz (THz) waves with highly penetrating and non-ionizing properties are ideally suited for dental caries diagnosis, however related research in this area is still in its infancy. Here, we successfully observe the existence of THz birefringence phenomenon in enamel and demonstrate the feasibility of utilizing THz spectroscopy and birefringence to realize caries diagnosis. By comparing THz responses between healthy teeth and caries, the transmitted THz signals in caries are evidently reduced. Concomitantly, the THz birefringence is also unambiguously inhibited when caries occurs due to the destruction of the internal hydroxyapatite crystal structure. This THz anisotropic activity is position-dependent, which can be qualitatively understood by optical microscopic imaging of dental structures. To increase the accuracy of THz technology in detecting dental caries and stimulate the development of THz caries instruments, the presence of significant THz birefringence effect induced anisotropy in enamel, in combination with the strong THz attenuation at the caries, may be used as a new tool for caries diagnosis.
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10
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Jiao X, Fan D. Non-thermal microwave effects: Conceptual and methodological problems. Food Chem 2022; 372:131217. [PMID: 34619524 DOI: 10.1016/j.foodchem.2021.131217] [Citation(s) in RCA: 3] [Impact Index Per Article: 1.5] [Reference Citation Analysis] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Received: 07/19/2021] [Accepted: 09/21/2021] [Indexed: 11/04/2022]
Affiliation(s)
- Xidong Jiao
- State Key Laboratory of Food Science and Technology, Jiangnan University, Wuxi 214122, China; School of Food Science and Technology, Jiangnan University, Wuxi 214122, China
| | - Daming Fan
- State Key Laboratory of Food Science and Technology, Jiangnan University, Wuxi 214122, China; School of Food Science and Technology, Jiangnan University, Wuxi 214122, China.
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11
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Zhang C, Yuan Y, Wu K, Wang Y, Zhu S, Shi J, Wang L, Li Q, Zuo X, Fan C, Chang C, Li J. Driving DNA Origami Assembly with a Terahertz Wave. NANO LETTERS 2022; 22:468-475. [PMID: 34968055 DOI: 10.1021/acs.nanolett.1c04369] [Citation(s) in RCA: 24] [Impact Index Per Article: 12.0] [Reference Citation Analysis] [Abstract] [Key Words] [MESH Headings] [Track Full Text] [Subscribe] [Scholar Register] [Indexed: 06/14/2023]
Abstract
Terahertz (THz) waves show nontrivial interactions with living systems, but the underlying molecular mechanisms have yet to be explored. Here, we employ DNA origami as a model system to study the interactions between THz waves and DNA structures. We find that a 3-min THz illumination (35.2 THz) can drive the unwinding of DNA duplexes at ∼10 °C below their melting point. Computational study reveals that the THz wave can resonate with the vibration of DNA bases, provoking the hydrogen bond breaking. The cooperation of thermal and nonthermal effects allows the unfolding of undesired secondary structures and the THz illumination can generate diverse DNA origami assemblies with the yield (>80%) ∼ 4-fold higher than that by the contact heating at similar temperatures. We also demonstrate the in situ assembly of DNA origami in cell lysate. This method enables remotely controllable assembly of intact biomacromolecules, providing new insight into the bioeffects of THz waves.
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Affiliation(s)
- Chao Zhang
- Institute of Molecular Medicine, Shanghai Key Laboratory for Nucleic Acids Chemistry and Nanomedicine, Renji Hospital, School of Medicine, Shanghai Jiao Tong University, Shanghai, 200025, China
| | - Yifang Yuan
- Innovation Laboratory of Terahertz Biophysics, National Innovation Institute of Defense Technology, Beijing 100071, China
- School of Physics and Optoelectronic Engineering, Xidian University, Xi'an 700071, China
| | - Kaijie Wu
- Innovation Laboratory of Terahertz Biophysics, National Innovation Institute of Defense Technology, Beijing 100071, China
- Key Laboratory of Physical Electronics and Devices of the Ministry of Education, Xi'an Jiaotong University, Xi'an, Shaanxi 710049, China
| | - Yue Wang
- Division of Physical Biology, CAS Key Laboratory of Interfacial Physics and Technology, Shanghai Institute of Applied Physics, Chinese Academy of Sciences, Shanghai 201800, China
| | - Shitai Zhu
- Division of Physical Biology, CAS Key Laboratory of Interfacial Physics and Technology, Shanghai Institute of Applied Physics, Chinese Academy of Sciences, Shanghai 201800, China
| | - Jiye Shi
- Division of Physical Biology, CAS Key Laboratory of Interfacial Physics and Technology, Shanghai Institute of Applied Physics, Chinese Academy of Sciences, Shanghai 201800, China
| | - Lihua Wang
- The Interdisciplinary Research Center, Shanghai Synchrotron Radiation Facility, Zhangjiang Laboratory, Shanghai Advanced Research Institute, Chinese Academy of Sciences, Shanghai 201210, China
- Shanghai Key Laboratory of Green Chemistry and Chemical Processes, School of Chemistry and Molecular Engineering, East China Normal University, Shanghai, 200241, China
| | - Qian Li
- School of Chemistry and Chemical Engineering, Frontiers Science Center for Transformative Molecules and National Center for Translational Medicine, Shanghai Jiao Tong University, 200240, Shanghai, China
| | - Xiaolei Zuo
- Institute of Molecular Medicine, Shanghai Key Laboratory for Nucleic Acids Chemistry and Nanomedicine, Renji Hospital, School of Medicine, Shanghai Jiao Tong University, Shanghai, 200025, China
| | - Chunhai Fan
- School of Chemistry and Chemical Engineering, Frontiers Science Center for Transformative Molecules and National Center for Translational Medicine, Shanghai Jiao Tong University, 200240, Shanghai, China
| | - Chao Chang
- Innovation Laboratory of Terahertz Biophysics, National Innovation Institute of Defense Technology, Beijing 100071, China
- School of Physics, Peking University, Beijing 100084, China
- Key Laboratory of Physical Electronics and Devices of the Ministry of Education, Xi'an Jiaotong University, Xi'an, Shaanxi 710049, China
| | - Jiang Li
- The Interdisciplinary Research Center, Shanghai Synchrotron Radiation Facility, Zhangjiang Laboratory, Shanghai Advanced Research Institute, Chinese Academy of Sciences, Shanghai 201210, China
- School of Chemistry and Chemical Engineering, Frontiers Science Center for Transformative Molecules and National Center for Translational Medicine, Shanghai Jiao Tong University, 200240, Shanghai, China
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12
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Wang J, Wang DX, Liu B, Jing X, Chen DY, Tang AN, Cui YX, Kong DM. Recent advances in constructing high-order DNA structures. Chem Asian J 2022; 17:e202101315. [PMID: 34989140 DOI: 10.1002/asia.202101315] [Citation(s) in RCA: 0] [Impact Index Per Article: 0] [Reference Citation Analysis] [Abstract] [Key Words] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Received: 11/22/2021] [Revised: 01/04/2022] [Indexed: 11/07/2022]
Abstract
Molecular self-assembly is widely used in the fields of biosensors, molecular devices, efficient catalytic materials, and medical biomaterials. As the carrier of genetic information, DNA is a kind of biomacromolecule composed of deoxyribonucleotide units. DNA nanotechnology extends DNA of its original properties as a molecule that stores and transmits genetic information from its biological environment. By taking advantage of its unique base pairing and inherent biocompatibility to produce structurally-defined supramolecular structures. With the continuously development of DNA technology, the assembly method of DNA nanostructures is not only limited on the basis of DNA hybridization but also other biochemical interactions. In this review, we summarize the latest methods used to construct high-order DNA nanostructures. The problems of DNA nanostructures are discussed and the future directions in this field are provided.
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Affiliation(s)
- Jing Wang
- Nankai University, Department of Chemistry, CHINA
| | | | - Bo Liu
- Nankai University, College of Chemistry, CHINA
| | - Xiao Jing
- Nankai University, College of Chemistry, CHINA
| | - Dan-Ye Chen
- Nankai University, College of Chemistry, CHINA
| | - An-Na Tang
- Nankai University, College of Chemistry, CHINA
| | - Yun-Xi Cui
- Nankai University, College of Chemistry, CHINA
| | - De Ming Kong
- Nankai University, Key Laboratory of Functional Polymer Materials, Weijin road 94, 30071, Tianjin, CHINA
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13
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Zhai T, Sun C, Ye D, Xia K, Liu X, Fan C, Li Q, Shen J. Electrochemically driven assembly of framework nucleic acids. J Electroanal Chem (Lausanne) 2022. [DOI: 10.1016/j.jelechem.2021.115901] [Citation(s) in RCA: 0] [Impact Index Per Article: 0] [Reference Citation Analysis] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Indexed: 11/24/2022]
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14
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Cherkasova OP, Serdyukov DS, Nemova EF, Ratushnyak AS, Kucheryavenko AS, Dolganova IN, Xu G, Skorobogatiy M, Reshetov IV, Timashev PS, Spektor IE, Zaytsev KI, Tuchin VV. Cellular effects of terahertz waves. JOURNAL OF BIOMEDICAL OPTICS 2021; 26:JBO-210179VR. [PMID: 34595886 PMCID: PMC8483303 DOI: 10.1117/1.jbo.26.9.090902] [Citation(s) in RCA: 24] [Impact Index Per Article: 8.0] [Reference Citation Analysis] [Abstract] [Key Words] [MESH Headings] [Track Full Text] [Subscribe] [Scholar Register] [Received: 05/31/2021] [Accepted: 09/08/2021] [Indexed: 05/15/2023]
Abstract
SIGNIFICANCE An increasing interest in the area of biological effects at exposure of tissues and cells to the terahertz (THz) radiation is driven by a rapid progress in THz biophotonics, observed during the past decades. Despite the attractiveness of THz technology for medical diagnosis and therapy, there is still quite limited knowledge about safe limits of THz exposure. Different modes of THz exposure of tissues and cells, including continuous-wave versus pulsed radiation, various powers, and number and duration of exposure cycles, ought to be systematically studied. AIM We provide an overview of recent research results in the area of biological effects at exposure of tissues and cells to THz waves. APPROACH We start with a brief overview of general features of the THz-wave-tissue interactions, as well as modern THz emitters, with an emphasis on those that are reliable for studying the biological effects of THz waves. Then, we consider three levels of biological system organization, at which the exposure effects are considered: (i) solutions of biological molecules; (ii) cultures of cells, individual cells, and cell structures; and (iii) entire organs or organisms; special attention is devoted to the cellular level. We distinguish thermal and nonthermal mechanisms of THz-wave-cell interactions and discuss a problem of adequate estimation of the THz biological effects' specificity. The problem of experimental data reproducibility, caused by rareness of the THz experimental setups and an absence of unitary protocols, is also considered. RESULTS The summarized data demonstrate the current stage of the research activity and knowledge about the THz exposure on living objects. CONCLUSIONS This review helps the biomedical optics community to summarize up-to-date knowledge in the area of cell exposure to THz radiation, and paves the ways for the development of THz safety standards and THz therapeutic applications.
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Affiliation(s)
- Olga P. Cherkasova
- Institute of Laser Physics of the Siberian Branch of the Russian Academy of Sciences, Russian Federation
- Novosibirsk State Technical University, Russian Federation
| | - Danil S. Serdyukov
- Institute of Laser Physics of the Siberian Branch of the Russian Academy of Sciences, Russian Federation
- Federal Research Center Institute of Cytology and Genetics of the Siberian Branch of the Russian Academy of Sciences, Russian Federation
| | - Eugenia F. Nemova
- Institute of Laser Physics of the Siberian Branch of the Russian Academy of Sciences, Russian Federation
| | - Alexander S. Ratushnyak
- Institute of Computational Technologies of the Siberian Branch of the Russian Academy of Sciences, Russian Federation
| | - Anna S. Kucheryavenko
- Institute of Solid State Physics of the Russian Academy of Sciences, Russian Federation
- Prokhorov General Physics Institute of the Russian Academy of Sciences, Russian Federation
| | - Irina N. Dolganova
- Institute of Solid State Physics of the Russian Academy of Sciences, Russian Federation
- Sechenov University, Institute for Regenerative Medicine, Russian Federation
- Sechenov University, World-Class Research Center “Digital Biodesign and Personalized Healthcare,” Russian Federation
| | - Guofu Xu
- Polytechnique Montreal, Department of Engineering Physics, Canada
| | | | - Igor V. Reshetov
- Sechenov University, Institute for Cluster Oncology, Russian Federation
- Academy of Postgraduate Education FSCC FMBA, Russian Federation
| | - Peter S. Timashev
- Sechenov University, Institute for Regenerative Medicine, Russian Federation
- Sechenov University, World-Class Research Center “Digital Biodesign and Personalized Healthcare,” Russian Federation
- N.N. Semenov Institute of Chemical Physics, Department of Polymers and Composites, Russian Federation
- Lomonosov Moscow State University, Department of Chemistry, Russian Federation
| | - Igor E. Spektor
- Prokhorov General Physics Institute of the Russian Academy of Sciences, Russian Federation
| | - Kirill I. Zaytsev
- Prokhorov General Physics Institute of the Russian Academy of Sciences, Russian Federation
- Sechenov University, Institute for Regenerative Medicine, Russian Federation
- Bauman Moscow State Technical University, Russian Federation
| | - Valery V. Tuchin
- Saratov State University, Russian Federation
- Institute of Precision Mechanics and Control of the Russian Academy of Sciences, Russian Federation
- National Research Tomsk State University, Russian Federation
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15
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Responsive optical probes for deep-tissue imaging: Photoacoustics and second near-infrared fluorescence. Adv Drug Deliv Rev 2021; 173:141-163. [PMID: 33774116 DOI: 10.1016/j.addr.2021.03.008] [Citation(s) in RCA: 35] [Impact Index Per Article: 11.7] [Reference Citation Analysis] [Abstract] [Key Words] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Received: 11/08/2020] [Revised: 01/23/2021] [Accepted: 03/11/2021] [Indexed: 02/08/2023]
Abstract
Optical imaging has played a vital role in development of biomedicine and image-guided theragnostic. Nevertheless, the clinical translation of optical molecular imaging for deep-tissue visualization is still limited by poor signal-to-background ratio and low penetration depth owing to light scattering and tissue autofluorescence. Hence, to facilitate precise diagnosis and accurate surgery excision in clinical practices, the responsive optical probes (ROPs) are broadly designed for specific reaction with biological analytes or disease biomarkers via chemical/physical interactions for photoacoustic and second near-infrared fluorescence (NIR-II, 900-1700 nm) fluorescence imaging. Herein, the recent advances in the development of ROPs including molecular design principles, activated mechanisms and treatment responses for photoacoustic and NIR-II fluorescence imaging are reviewed. Furthermore, the present challenges and future perspectives of ROPs for deep-tissue imaging are also discussed.
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16
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Tokunaga Y, Tanaka M, Iida H, Kinoshita M, Tojima Y, Takeuchi K, Imashimizu M. Nonthermal excitation effects mediated by sub-terahertz radiation on hydrogen exchange in ubiquitin. Biophys J 2021; 120:2386-2393. [PMID: 33894216 PMCID: PMC8390810 DOI: 10.1016/j.bpj.2021.04.013] [Citation(s) in RCA: 3] [Impact Index Per Article: 1.0] [Reference Citation Analysis] [Abstract] [Track Full Text] [Download PDF] [Figures] [Journal Information] [Subscribe] [Scholar Register] [Received: 12/01/2020] [Revised: 03/23/2021] [Accepted: 04/16/2021] [Indexed: 11/28/2022] Open
Abstract
Water dynamics in the hydration layers of biomolecules play crucial roles in a wide range of biological functions. A hydrated protein contains multiple components of diffusional and vibrational dynamics of water and protein, which may be coupled at ∼0.1-THz frequency (10-ps timescale) at room temperature. However, the microscopic description of biomolecular functions based on various modes of protein-water-coupled motions remains elusive. A novel approach for perturbing the hydration dynamics in the subterahertz frequency range and probing them at the atomic level is therefore warranted. In this study, we investigated the effect of klystron-based, intense 0.1-THz excitation on the slow dynamics of ubiquitin using NMR-based measurements of hydrogen-deuterium exchange. We demonstrated that the subterahertz irradiation accelerated the hydrogen-deuterium exchange of the amides located in the interior of the protein and hydrophobic surfaces while decelerating this exchange in the amides located in the surface loop and short 310 helix regions. This subterahertz-radiation-induced effect was qualitatively contradictory to the increased-temperature-induced effect. Our results suggest that the heterogeneous water dynamics occurring at the protein-water interface include components that are nonthermally excited by the subterahertz radiation. Such subterahertz-excited components may be linked to the slow function-related dynamics of the protein.
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Affiliation(s)
- Yuji Tokunaga
- Cellular and Molecular Biotechnology Research Institute, National Institute of Advanced Industrial Science and Technology, Tokyo, Japan
| | - Masahito Tanaka
- Research Institute for Measurement and Analytical Instrumentation, National Institute of Advanced Industrial Science and Technology, Tsukuba, Japan
| | - Hitoshi Iida
- Research Institute for Physical Measurement, National Institute of Advanced Industrial Science and Technology, Tsukuba, Japan
| | - Moto Kinoshita
- Research Institute for Physical Measurement, National Institute of Advanced Industrial Science and Technology, Tsukuba, Japan
| | - Yuya Tojima
- Research Institute for Physical Measurement, National Institute of Advanced Industrial Science and Technology, Tsukuba, Japan
| | - Koh Takeuchi
- Cellular and Molecular Biotechnology Research Institute, National Institute of Advanced Industrial Science and Technology, Tokyo, Japan
| | - Masahiko Imashimizu
- Cellular and Molecular Biotechnology Research Institute, National Institute of Advanced Industrial Science and Technology, Tokyo, Japan.
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17
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18
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Kawasaki T, Yamaguchi Y, Ueda T, Ishikawa Y, Yaji T, Ohta T, Tsukiyama K, Idehara T, Saiki M, Tani M. Irradiation effect of a submillimeter wave from 420 GHz gyrotron on amyloid peptides in vitro. BIOMEDICAL OPTICS EXPRESS 2020; 11:5341-5351. [PMID: 33014618 PMCID: PMC7510884 DOI: 10.1364/boe.395218] [Citation(s) in RCA: 1] [Impact Index Per Article: 0.3] [Reference Citation Analysis] [Abstract] [Track Full Text] [Subscribe] [Scholar Register] [Received: 04/22/2020] [Revised: 08/07/2020] [Accepted: 08/07/2020] [Indexed: 06/11/2023]
Abstract
On using the far-infrared radiation system, whether the irradiation effect is thermal or non-thermal is controversial. We irradiated amyloid peptides that are causal factors for amyloidosis by using a submillimeter wave from 420 GHz gyrotron. Fluorescence reagent assay, optical and electron microscopies, and synchrotron-radiation infrared microscopy showed that the irradiation increased the fibrous conformation of peptides at room temperature for 30 min. The temperature increase on the sample was only below 5 K, and a simple heating up to 318 K hardly induced the fibril formation. Therefore, the amyloid aggregation was driven by the far-infrared radiation with little thermal effect.
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Affiliation(s)
- Takayasu Kawasaki
- IR-FEL Research Center, Research Institute for Science and Technology, Organization for Research Advancement, Tokyo University of Science, 2641 Yamazaki, Noda, Chiba 278-8510, Japan
| | - Yuusuke Yamaguchi
- Research Center for Development of Far-Infrared Region, University of Fukui, 3-9-1 Bunkyo, Fukui, Fukui 910-8507, Japan
| | - Tomomi Ueda
- Department of Applied Chemistry, Faculty of Engineering, Sanyo-Onoda City University, 1-1-1 Daigakudori, Sanyo-Onoda, Yamaguchi 756-0884, Japan
| | - Yuya Ishikawa
- Research Center for Development of Far-Infrared Region, University of Fukui, 3-9-1 Bunkyo, Fukui, Fukui 910-8507, Japan
| | - Toyonari Yaji
- SR Center, Research Organization of Science and Technology, Ritsumeikan University, 1-1-1 Noji-Higasi, Kusatsu, Shiga 525-8577, Japan
| | - Toshiaki Ohta
- SR Center, Research Organization of Science and Technology, Ritsumeikan University, 1-1-1 Noji-Higasi, Kusatsu, Shiga 525-8577, Japan
| | - Koichi Tsukiyama
- IR-FEL Research Center, Research Institute for Science and Technology, Organization for Research Advancement, Tokyo University of Science, 2641 Yamazaki, Noda, Chiba 278-8510, Japan
| | - Toshitaka Idehara
- Research Center for Development of Far-Infrared Region, University of Fukui, 3-9-1 Bunkyo, Fukui, Fukui 910-8507, Japan
| | - Masatoshi Saiki
- Department of Applied Chemistry, Faculty of Engineering, Sanyo-Onoda City University, 1-1-1 Daigakudori, Sanyo-Onoda, Yamaguchi 756-0884, Japan
| | - Masahiko Tani
- Research Center for Development of Far-Infrared Region, University of Fukui, 3-9-1 Bunkyo, Fukui, Fukui 910-8507, Japan
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19
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Zhao J, Hu E, Shang S, Wu D, Li P, Zhang P, Tan D, Lu X. Study of the effects of 3.1 THz radiation on the expression of recombinant red fluorescent protein (RFP) in E. coli. BIOMEDICAL OPTICS EXPRESS 2020; 11:3890-3899. [PMID: 33014573 PMCID: PMC7510898 DOI: 10.1364/boe.392838] [Citation(s) in RCA: 1] [Impact Index Per Article: 0.3] [Reference Citation Analysis] [Abstract] [Track Full Text] [Subscribe] [Scholar Register] [Received: 03/23/2020] [Revised: 06/16/2020] [Accepted: 06/16/2020] [Indexed: 05/13/2023]
Abstract
In recent years, many studies have been conducted to investigate the non-thermal effects of THz radiation on different organisms, but further studies are needed to fully elucidate the effects, especially on the molecular level. In this study, we explored the effects of at 3.1 THz radiation on protein expression in Escherichia coli (E. coli) using red fluorescent protein as a reporter molecule. After 8 hours of continuous THz irradiation of bacteria on LB (Luria-Bertani) solid plates at an average power of 33 mW/cm2 and 10 Hz pulse repetition frequency, we found that the plasmid copy number, protein expression and fluorescence intensity of bacteria from the irradiated area were 3.8-, 2.7-, and 3.3 times higher than in bacteria from the un-irradiated area, respectively. These findings suggest that plasmid replication changed significantly in bacteria exposed to 3.1 THz radiation, resulting in increased protein expression as evidenced by increased fluorescence intensity of the RFP reporter.
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Affiliation(s)
- Jiping Zhao
- Key Laboratory of Biomedical Information Engineering of Ministry of Education, School of Life Science and Technology, Xi’an Jiaotong University, Xi’an 710049, Shaanxi, China
| | - Erling Hu
- Key Laboratory of Biomedical Information Engineering of Ministry of Education, School of Life Science and Technology, Xi’an Jiaotong University, Xi’an 710049, Shaanxi, China
| | - Sen Shang
- Key Laboratory of Biomedical Information Engineering of Ministry of Education, School of Life Science and Technology, Xi’an Jiaotong University, Xi’an 710049, Shaanxi, China
| | - Dai Wu
- Institute of Applied Electronics, China Academy of Engineering Physics, 64 Mianshan Road, Mianyang, 621900, China
| | - Peng Li
- Institute of Applied Electronics, China Academy of Engineering Physics, 64 Mianshan Road, Mianyang, 621900, China
| | - Peng Zhang
- Institute of Applied Electronics, China Academy of Engineering Physics, 64 Mianshan Road, Mianyang, 621900, China
| | - Dan Tan
- Key Laboratory of Biomedical Information Engineering of Ministry of Education, School of Life Science and Technology, Xi’an Jiaotong University, Xi’an 710049, Shaanxi, China
| | - Xiaoyun Lu
- Key Laboratory of Biomedical Information Engineering of Ministry of Education, School of Life Science and Technology, Xi’an Jiaotong University, Xi’an 710049, Shaanxi, China
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20
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Anees P, Gauthier MA. Homogenous Scavenging Resolves Low-Purification Yield/Selectivity Caused by Secondary Binding of Protein-A to Antigen-Binding Antibody Fragments. Biomacromolecules 2020; 21:825-829. [PMID: 31841628 DOI: 10.1021/acs.biomac.9b01516] [Citation(s) in RCA: 0] [Impact Index Per Article: 0] [Reference Citation Analysis] [Abstract] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Indexed: 11/28/2022]
Abstract
Antigen-binding fragments of antibodies are biotechnologically useful agents for decorating drug delivery systems, for blocking cell-surface receptors in cell culture, for recognizing analytes in biosensors, and potentially as therapeutics. They are typically produced by enzymatic digestion of full antibodies and isolated from the undesirable fragment crystallizable (Fc) by affinity chromatography using Protein-A columns. However, while Protein-A has a strong "classical" interaction with Fc fragments, it can also more weakly bind to an "alternative" site on the heavy chain variable region of antigen-binding fragments. As such, purifying small amounts of antibody fragments by Protein-A chromatography can result in low yield. Moreover, loading larger amounts of antibody fragments onto a Protein-A column can result in poor separation, because of competition of Fc and antigen-binding fragments for immobilized Protein-A. This study demonstrates that Protein-A-based homogeneous scavenging resolves this issue by precisely controlling the stoichiometry of Protein-A to Fc fragments, something that is not possible for conventional flow-type systems, such as affinity chromatography.
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Affiliation(s)
- Palapuravan Anees
- Institut National de la Recherche Scientifique (INRS), EMT Research Center , 1650 boul. Lionel-Boulet , Varennes , J3X 1S2 , Canada
| | - Marc A Gauthier
- Institut National de la Recherche Scientifique (INRS), EMT Research Center , 1650 boul. Lionel-Boulet , Varennes , J3X 1S2 , Canada
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21
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Kim F, Chen T, Burgess T, Rasie P, Selinger TL, Greschner A, Rizis G, Carneiro K. Functionalized DNA nanostructures as scaffolds for guided mineralization. Chem Sci 2019; 10:10537-10542. [PMID: 32055376 PMCID: PMC6988742 DOI: 10.1039/c9sc02811k] [Citation(s) in RCA: 19] [Impact Index Per Article: 3.8] [Reference Citation Analysis] [Abstract] [Track Full Text] [Download PDF] [Figures] [Journal Information] [Subscribe] [Scholar Register] [Received: 06/07/2019] [Accepted: 09/26/2019] [Indexed: 11/21/2022] Open
Abstract
The field of DNA nanotechnology uses synthetic DNA strands as building blocks for designing complex shapes in one-, two- and three-dimensions. Here, we investigate whether DNA nanostructures are feasible platforms for the precise organization of polyaspartic acid (pAsp), a known mineral carrier, with a goal towards biomimetic mineralization for enamel regeneration. We describe the preparation of DNA-pAsp conjugates and their subsequent assembly into ordered nanostructures. Covalent attachment of pAsp to DNA was noted to hinder DNA nanostructure formation past a certain threshold (50% pAsp) when tested on a previously published DNA system. However, a simplified double stranded DNA system (3sDH system) was more robust and efficient in its pAsp incorporation. In addition, the 3sDH system was successful in organizing mineral inducing groups in one dimension at repeating intervals of 28.7 ± 4.0 nm, as determined by atomic force microscopy. Our results demonstrate that DNA nanostructures can be functionalized with pAsp and act as a platform to investigate guided mineralization.
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Affiliation(s)
- Francesca Kim
- Faculty of Dentistry , University of Toronto , Toronto , ON M5G 1G6 , Canada .
| | - Tong Chen
- Faculty of Dentistry , University of Toronto , Toronto , ON M5G 1G6 , Canada .
| | - Trevor Burgess
- Faculty of Dentistry , University of Toronto , Toronto , ON M5G 1G6 , Canada .
| | - Prakash Rasie
- Faculty of Dentistry , University of Toronto , Toronto , ON M5G 1G6 , Canada .
| | - Tim Luca Selinger
- Faculty of Dentistry , University of Toronto , Toronto , ON M5G 1G6 , Canada .
| | - Andrea Greschner
- Institut National de la Recherche Scientifique (INRS) , EMT Research Center , Varennes , QC J3X 1S2 , Canada
| | - Georgios Rizis
- Faculty of Dentistry , University of Toronto , Toronto , ON M5G 1G6 , Canada .
| | - Karina Carneiro
- Faculty of Dentistry , University of Toronto , Toronto , ON M5G 1G6 , Canada .
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