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Figeys HP, Gelbcke M. Composés Oléfiniques et Acétyléniques. IV. Nouvelles Synthèses du 1,3,5-Hexatriene; Électrodimérisation de L'Acroléine sur un Couple Zinc-Cuivre. ACTA ACUST UNITED AC 2010. [DOI: 10.1002/bscb.19740830909] [Citation(s) in RCA: 5] [Impact Index Per Article: 0.4] [Reference Citation Analysis] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Indexed: 11/07/2022]
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3
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Takatsuki KI, Ohgushi S, Kohmoto S, Kishikawa K, Yamamoto M. A simple and efficient synthesis of puromycin, 2,2'-anhydro-pyrimidine nucleosides, cytidines and 2',3'-anhydroadenosine from 3',5'-O-sulfinyl xylo-nucleosides. NUCLEOSIDES NUCLEOTIDES & NUCLEIC ACIDS 2006; 25:719-34. [PMID: 16898411 DOI: 10.1080/15257770600725929] [Citation(s) in RCA: 7] [Impact Index Per Article: 0.4] [Reference Citation Analysis] [Abstract] [MESH Headings] [Track Full Text] [Subscribe] [Scholar Register] [Indexed: 10/24/2022]
Abstract
Synthesis of antibiotics, puromycin and 3'-amino-3'-deoxy-N6,N6-dimethyladenosine 11 was achieved by utilizing the cyclic sulfite 6a of the xylo-3',5'-dihydroxy group as a new protective group. The key synthetic step is the deprotection of the sulfite moiety through the intramolecular cyclization of 2-alpha-carbamate 7. In a similar manner 2,2'-anhydro-pyrimidine nucleosides 15, ribo-cytidines 17 and 2',3'-anhydroadenosine 14 were prepared in high yields from the corresponding sulfites 4, 5, and 6b, respectively.
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Affiliation(s)
- Ken-ichi Takatsuki
- Ichikawa Research Institute, Kobayashi Perfumery Co., Ltd., Ichikawa-City, Japan.
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4
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Swigor JE, Pittman KA. Synthesis of 1-(2-deoxy-2-fluoro-β-D-arabinofuranosyl)-5-iodo [2-14C] uracil. J Labelled Comp Radiopharm 2006. [DOI: 10.1002/jlcr.2580220909] [Citation(s) in RCA: 4] [Impact Index Per Article: 0.2] [Reference Citation Analysis] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Indexed: 11/11/2022]
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5
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Honcharenko D, Varghese OP, Plashkevych O, Barman J, Chattopadhyaya J. Synthesis and Structure of Novel Conformationally Constrained 1‘,2‘-Azetidine-Fused Bicyclic Pyrimidine Nucleosides: Their Incorporation into Oligo-DNAs and Thermal Stability of the Heteroduplexes. J Org Chem 2005; 71:299-314. [PMID: 16388649 DOI: 10.1021/jo052115x] [Citation(s) in RCA: 42] [Impact Index Per Article: 2.2] [Reference Citation Analysis] [Abstract] [MESH Headings] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Indexed: 01/28/2023]
Abstract
[structures: see text] The synthesis of novel 1',2'-aminomethylene bridged (6-aza-2-oxabicyclo[3.2.0]heptane) "azetidine" pyrimidine nucleosides and their transformations to the corresponding phosphoramidite building blocks (20, 39, and 42) for automated solid-phase oligonucleotide synthesis is reported. The novel bicyclonucleoside "azetidine" monomers were synthesized by two different strategies starting from the known sugar intermediate 6-O-benzyl-1,2:3,4-bis-O-isopropylidene-D-psicofuranose. Conformational analysis performed by molecular modeling (ab initio and MD simulations) and NMR showed that the azetidine-fused furanose sugar is locked in a North-East conformation with pseudorotational phase angle (P) in the range of 44.5-53.8 degrees and sugar puckering amplitude (phi(m)) of 29.3-32.6 degrees for the azetidine-modified T, U, C, and 5-Me-C nucleosides. Thermal denaturation studies of azetidine-modified oligo-DNA/RNA heteroduplexes show that the azetidine-fused nucleosides display improved binding affinities when compared to that of previously synthesized North-East sugar constrained oxetane fused analogues.
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Affiliation(s)
- Dmytro Honcharenko
- Department of Bioorganic Chemistry, Box 581, Biomedical Center, Uppsala University, SE-75123 Uppsala, Sweden
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Cai J, Li X, Taylor JS. Improved nucleic acid triggered probe activation through the use of a 5-thiomethyluracil peptide nucleic acid building block. Org Lett 2005; 7:751-4. [PMID: 15727432 DOI: 10.1021/ol0478382] [Citation(s) in RCA: 43] [Impact Index Per Article: 2.3] [Reference Citation Analysis] [Abstract] [MESH Headings] [Grants] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Indexed: 11/30/2022]
Abstract
To improve the efficiency of a nucleic acid triggered probe activation (NATPA) system a 5-thiomethyluracil peptide nucleic acid (PNA) building block has been synthesized. Attachment of imidazole and a coumarin ester to uracils at the ends of two PNAs resulted in a 550 000-fold acceleration of DNA-triggered coumarin release relative to imidazole and a 6-fold increase in k(cat) relative to a system which had these groups attached to the amino and carboxy ends of PNAs. [structure: see text]
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Affiliation(s)
- Jianfeng Cai
- Department of Chemistry, Washington University, One Brookings Drive, St. Louis, MO 63130, USA
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Schütt M, Kowollik G, Etzold G, Langen P. Nucleoside von Fluorzuckern. IX. Synthese von Fluorzucker-Nucleosiden aus Uridin und Cytidin. ACTA ACUST UNITED AC 2004. [DOI: 10.1002/prac.19723140207] [Citation(s) in RCA: 11] [Impact Index Per Article: 0.6] [Reference Citation Analysis] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Indexed: 11/10/2022]
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8
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Griffon JF, Mathé C, Faraj A, Aubertin AM, De Clercq E, Balzarini J, Sommadossi JP, Gosselin G. Stereospecific synthesis and biological evaluations of beta-L-pentofuranonucleoside derivatives of 5-fluorouracil and 5-fluorocytosine. Eur J Med Chem 2001; 36:447-60. [PMID: 11451533 DOI: 10.1016/s0223-5234(01)01238-7] [Citation(s) in RCA: 13] [Impact Index Per Article: 0.6] [Reference Citation Analysis] [Abstract] [MESH Headings] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Indexed: 11/28/2022]
Abstract
In the search for new chemotherapeutic agents, we have focused our work on the synthesis and the study of several unnatural beta-L-nucleoside analogues. In this paper, we report on the synthesis of beta-L-pentofuranonucleosides (and their 2'-deoxy derivatives) of 5-fluorouracil and their inhibitory effects on the proliferation of several murine and human tumor cells. The corresponding 5-fluorocytosine derivatives were also synthesized and their anti-HIV and anti-HBV activities have been evaluated.
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Affiliation(s)
- J F Griffon
- Laboratoire de Chimie Organique Biomoléculaire de Synthèse, UMR 5625 CNRS-UM II, Université Montpellier II, case courrier 008, Place Eugène Bataillon, F-34095 Montpellier, France
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Saladino R, Mezzetti M, Mincione E, Palamara AT, Savini P, Marini S. Synthesis, cytotoxic effect and antiviral activity of 1-(beta-D-arabinofuranosyl)-5-bromo-N4-substituted cytosine and 1-(beta-D-arabinofuranosyl)-5-bromo-4-methoxypyrimidin-2(1H)-one derivatives. NUCLEOSIDES & NUCLEOTIDES 1999; 18:2499-510. [PMID: 10639751 DOI: 10.1080/07328319908044622] [Citation(s) in RCA: 3] [Impact Index Per Article: 0.1] [Reference Citation Analysis] [Abstract] [MESH Headings] [Track Full Text] [Subscribe] [Scholar Register] [Indexed: 10/23/2022]
Abstract
A convenient and mild synthesis of 5-bromo-N4-substituted-1-(beta-D-arabinofuranosyl)cytosine and 5-bromo-O4-methyl-1-(beta-D-arabinofuranosyl)pyrimidin-2(1H)-one derivatives by selective oxyfunctionalization of the corresponding 4-thionucleosides with 3,3-dimethyldioxirane is reported. The cytotoxicity and the antiviral activity against parainfluenza 1 (Sendai virus) of all new synthesized products are also reported.
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Affiliation(s)
- R Saladino
- Dipartimento Agrochimico Agrobiologico, Università della Tuscia, Viterbo, Italy
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Narang KK, Singh VP, Bhattacharya D. 5-Fluorouracil and 5-fluorouracil-histidine complexes with AlIII, CrIII and FeIII ions and their antitumour activity. Polyhedron 1997. [DOI: 10.1016/s0277-5387(96)00551-7] [Citation(s) in RCA: 14] [Impact Index Per Article: 0.5] [Reference Citation Analysis] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Indexed: 10/27/2022]
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11
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Zablotskaya A, Segal I, Pedersen EV. Simple and effective method for the synthesis of 3?,5?-substituted 1-?-D-arabinofuranosyluracil. Chem Heterocycl Compd (N Y) 1996. [DOI: 10.1007/bf01165730] [Citation(s) in RCA: 2] [Impact Index Per Article: 0.1] [Reference Citation Analysis] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Indexed: 11/29/2022]
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Rahim SG, Trivedi N, Bogunovic-Batchelor MV, Hardy GW, Mills G, Selway JW, Snowden W, Littler E, Coe PL, Basnak I, Whale RF, Walker RT. Synthesis and anti-herpes virus activity of 2'-deoxy-4'-thiopyrimidine nucleosides. J Med Chem 1996; 39:789-95. [PMID: 8576922 DOI: 10.1021/jm950029r] [Citation(s) in RCA: 70] [Impact Index Per Article: 2.5] [Reference Citation Analysis] [Abstract] [MESH Headings] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Indexed: 01/31/2023]
Abstract
A series of 5-substituted 2'-deoxy-4'-thiopyrimidine nucleosides was synthesized and evaluated as potential antiviral agents. A number of analogues such as 2'-deoxy-5-propyl-4'-thiouridine (3ii), 2'-deoxy-5-isopropyl-4'-thiouridine (3iii), 5-cyclopropyl-2'-deoxy-4'-thiouridine (3iv), 2'-deoxy-4'-thio-5-vinyluridine (3viii), and 5-(2-chloroethyl)-2'-deoxy-4'-thiouridine (3xx) were found to be highly active against herpes simplex virus type-1 (HSV-1) and varicella zoster virus (VZV) in vitro with no significant cytotoxicity. The compound with the broadest spectrum of activity was 2'-deoxy-5-ethyl-4'-thiouridine (3i) which showed significant activity against HSV-1, HSV-2, and VZV.
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Affiliation(s)
- S G Rahim
- Wellcome Research Laboratories, Beckenham, Kent, U.K
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Lee JK, Won JH, Park JS, Hwang CH, Chung KH, Ryu EK. Synthesis of substituted pyridine-2,4-dione nucleosides. Arch Pharm Res 1992. [DOI: 10.1007/bf02973990] [Citation(s) in RCA: 0] [Impact Index Per Article: 0] [Reference Citation Analysis] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Indexed: 11/27/2022]
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14
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Singh UP. Crystal and molecular structure of 5-fluorouracil-Zinc (II) complex. CRYSTAL RESEARCH AND TECHNOLOGY 1989. [DOI: 10.1002/crat.2170240917] [Citation(s) in RCA: 2] [Impact Index Per Article: 0.1] [Reference Citation Analysis] [Track Full Text] [Subscribe] [Scholar Register] [Indexed: 11/09/2022]
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Arita M, Okumoto T, Saito T, Hoshino Y, Fukukawa K, Shuto S, Tsujino M, Sakakibara H, Ohno M. Enantioselective synthesis of new analogs of neplanocin A and their biological activity. Carbohydr Res 1987. [DOI: 10.1016/s0008-6215(00)90890-5] [Citation(s) in RCA: 13] [Impact Index Per Article: 0.4] [Reference Citation Analysis] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Indexed: 10/17/2022]
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Anand NN, Brown DM, Salisbury SA. The stability of oligodeoxyribonucleotide duplexes containing degenerate bases. Nucleic Acids Res 1987; 15:8167-76. [PMID: 3671080 PMCID: PMC306351 DOI: 10.1093/nar/15.20.8167] [Citation(s) in RCA: 28] [Impact Index Per Article: 0.8] [Reference Citation Analysis] [Abstract] [MESH Headings] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Indexed: 01/06/2023] Open
Abstract
Oligodeoxyribonucleotides containing N4-methoxycytosine (mo4C), N4-methoxy-5-methylcytosine (mo4m5C) and other base-analogues were synthesised and used to compare the stabilities of duplexes containing mo4C.A and mo4C.G base pairs with those containing normal and mismatch pairs. The Tm values and other thermodynamic parameters are recorded. The otherwise identical duplexes containing a mo4C.A and a mo4C.G base pair have closely similar stabilities to each other and to the corresponding duplexes containing normal base pairs, considerably greater than the stabilities of those containing mismatch pairs. Corresponding observations are recorded in dot-blot experiments using M13 cloned DNA carrying an insert complementary to the oligonucleotides; approximate Td values are given.
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Affiliation(s)
- N N Anand
- MRC Laboratory of Molecular Biology, Cambridge, UK
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Saxena AK, Sinha S. Pyrimidinones as biodynamic agents. PROGRESS IN DRUG RESEARCH. FORTSCHRITTE DER ARZNEIMITTELFORSCHUNG. PROGRES DES RECHERCHES PHARMACEUTIQUES 1987; 31:127-60. [PMID: 2894039 DOI: 10.1007/978-3-0348-9289-6_3] [Citation(s) in RCA: 0] [Impact Index Per Article: 0] [Reference Citation Analysis] [MESH Headings] [Track Full Text] [Subscribe] [Scholar Register] [Indexed: 01/03/2023]
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Hadfield AF, Sartorelli AC. The pharmacology of prodrugs of 5-fluorouracil and 1-beta-D-arabinofuranosylcytosine. ADVANCES IN PHARMACOLOGY AND CHEMOTHERAPY 1984; 20:21-67. [PMID: 6085531 DOI: 10.1016/s1054-3589(08)60264-1] [Citation(s) in RCA: 25] [Impact Index Per Article: 0.6] [Reference Citation Analysis] [MESH Headings] [Grants] [Track Full Text] [Subscribe] [Scholar Register] [Indexed: 01/18/2023]
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20
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Kreutzberger A, Schimmelpfennig H. [Tumor inhibitory agents. 12. 2-Ureido-4(3H)-pyrimidinones]. Arch Pharm (Weinheim) 1981; 314:34-41. [PMID: 7224824 DOI: 10.1002/ardp.19813140107] [Citation(s) in RCA: 9] [Impact Index Per Article: 0.2] [Reference Citation Analysis] [MESH Headings] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Indexed: 01/24/2023]
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22
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Kishi T, Tsuchiya T, Umezawa S. Photochemical Reaction at 3-O-Functional Group of Methyl 4,6-O-CycIohexylidene-2-deoxy-2-methoxycarbonylamino-α-D-glucopyranoside Derivatives. BULLETIN OF THE CHEMICAL SOCIETY OF JAPAN 1979. [DOI: 10.1246/bcsj.52.3015] [Citation(s) in RCA: 13] [Impact Index Per Article: 0.3] [Reference Citation Analysis] [Track Full Text] [Subscribe] [Scholar Register] [Indexed: 11/12/2022]
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24
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25
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Kreis W, Watanabe KA, Fox JJ. Structural Requirements for the Enzymatic Deamination of Cytosine Nucleosides. Helv Chim Acta 1978. [DOI: 10.1002/hlca.19780610310] [Citation(s) in RCA: 26] [Impact Index Per Article: 0.6] [Reference Citation Analysis] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Indexed: 11/07/2022]
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Fox JJ, Otter BA. Nucleosides. XCI. Some chemical properties of the antileukemic agent 2,2'-anhydro-1-beta-D-arabinofuranosyl-5-fluorocytosine. Ann N Y Acad Sci 1975; 255:59-70. [PMID: 1059375 DOI: 10.1111/j.1749-6632.1975.tb29213.x] [Citation(s) in RCA: 6] [Impact Index Per Article: 0.1] [Reference Citation Analysis] [MESH Headings] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Indexed: 12/25/2022]
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27
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28
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Bloch A. The structure of nucleosides in relation to their biological and and biochemical activity: a summary. Ann N Y Acad Sci 1975; 255:576-96. [PMID: 53023 DOI: 10.1111/j.1749-6632.1975.tb29262.x] [Citation(s) in RCA: 43] [Impact Index Per Article: 0.9] [Reference Citation Analysis] [MESH Headings] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Indexed: 12/12/2022]
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29
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Verbrüggen H, Krolikiewicz K, Niedballa U. Nucleosidsynthesen, XIV. Aminierung von Heterocyclen, I. Eine neue einfache Synthese von Cytidinen. ACTA ACUST UNITED AC 1975. [DOI: 10.1002/jlac.197519750516] [Citation(s) in RCA: 29] [Impact Index Per Article: 0.6] [Reference Citation Analysis] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Indexed: 11/07/2022]
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Tattersall MH, Ganeshaguru K, Hoffbrand AV. The mechanisms of action of three fluorine substituted cytosine analogs: implications for cancer chemotherapy. Biochem Pharmacol 1974; 23:2533-6. [PMID: 4416357 DOI: 10.1016/0006-2952(74)90175-0] [Citation(s) in RCA: 3] [Impact Index Per Article: 0.1] [Reference Citation Analysis] [MESH Headings] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Indexed: 01/10/2023]
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Holý A, Soucek M. Benzoyl cyanide--a new benzoylating agent in nucleoside and nucleotide chemistry. Tetrahedron Lett 1971:185-8. [PMID: 5545640 DOI: 10.1016/s0040-4039(01)96392-0] [Citation(s) in RCA: 47] [Impact Index Per Article: 0.9] [Reference Citation Analysis] [MESH Headings] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Indexed: 01/15/2023]
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34
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Camiener GW. Studies of the enzymatic deamination of cytosine arabinoside. 3. Substrate requirements and inhibitors of the deaminase of human liver. Biochem Pharmacol 1967; 16:1691-702. [PMID: 6061556 DOI: 10.1016/0006-2952(67)90244-4] [Citation(s) in RCA: 36] [Impact Index Per Article: 0.6] [Reference Citation Analysis] [MESH Headings] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Indexed: 01/18/2023]
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Dollinger MR, Burchenal JH, Kreis W, Fox JJ. Analogs of 1-beta-D-arabinofuranosylcytosine. Studies on mechanisms of action in Burkitt's cell culture and mouse leukemia, and in vitro deamination studies. Biochem Pharmacol 1967; 16:689-706. [PMID: 6033789 DOI: 10.1016/0006-2952(67)90082-2] [Citation(s) in RCA: 29] [Impact Index Per Article: 0.5] [Reference Citation Analysis] [MESH Headings] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Indexed: 01/18/2023]
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[11] Synthesis of nucleoside derivatives by conversion from preformed nucleosides. Methods Enzymol 1967. [DOI: 10.1016/s0076-6879(67)12015-6] [Citation(s) in RCA: 0] [Impact Index Per Article: 0] [Reference Citation Analysis] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Indexed: 11/23/2022]
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37
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Fox JJ, Miller NC, Cushley RJ. Nucleosides XXXVI. Transformation of arabinopyrimidine nucleosides. Tetrahedron Lett 1966; 40:4927-34. [PMID: 5977305 DOI: 10.1016/s0040-4039(00)70117-1] [Citation(s) in RCA: 17] [Impact Index Per Article: 0.3] [Reference Citation Analysis] [MESH Headings] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Indexed: 01/17/2023]
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38
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Cohen SS. Introduction to the biochemistry of D-arabinosyl nucleosides. PROGRESS IN NUCLEIC ACID RESEARCH AND MOLECULAR BIOLOGY 1966; 5:1-88. [PMID: 5337697 DOI: 10.1016/s0079-6603(08)60231-7] [Citation(s) in RCA: 151] [Impact Index Per Article: 2.6] [Reference Citation Analysis] [MESH Headings] [Track Full Text] [Subscribe] [Scholar Register] [Indexed: 01/14/2023]
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