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Biagini C, Capocasa G, Del Giudice D, Cataldi V, Mandolini L, Di Stefano S. Controlling the liberation rate of the in situ release of a chemical fuel for the operationally autonomous motions of molecular machines. Org Biomol Chem 2020; 18:3867-3873. [PMID: 32373832 DOI: 10.1039/d0ob00669f] [Citation(s) in RCA: 8] [Impact Index Per Article: 2.0] [Reference Citation Analysis] [Abstract] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Indexed: 12/18/2022]
Abstract
Second-order rate constants of the aminolysis of 2-cyano-2-phenylpropanoic anhydride 3 by a series of N-methylanilines differently substituted in the aromatic moiety (4a-d) were measured in dichloromethane. The common reaction product of aminolysis is 2-cyano-2-phenylpropanoic acid 1, which is known to be an effective fuel for acid-base driven molecular machines, but cannot be used in molar excess with respect to the machine. The motivation behind the kinetic study has been the prospect of using the aminolysis of 3 to supply the machine with fuel at a rate that is never so high as to overfeed the system, thus avoiding the malfunction of the machine with concomitant waste of fuel. Knowledge of the kinetic parameters dictated the choice of 4c as the best nucleophile in the lot for feeding acid 1 into a catenane-based molecular machine at a rate that ensured a correct operation.
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Affiliation(s)
- Chiara Biagini
- Dipartimento di Chimica, Università di Roma "La Sapienza", and Istituto CNR per i Sistemi Biologici (ISB-CNR), Sezione Meccanismi di Reazione, P.le A. Moro 5, 00185 Roma, Italy.
| | - Giorgio Capocasa
- Dipartimento di Chimica, Università di Roma "La Sapienza", and Istituto CNR per i Sistemi Biologici (ISB-CNR), Sezione Meccanismi di Reazione, P.le A. Moro 5, 00185 Roma, Italy.
| | - Daniele Del Giudice
- Dipartimento di Chimica, Università di Roma "La Sapienza", and Istituto CNR per i Sistemi Biologici (ISB-CNR), Sezione Meccanismi di Reazione, P.le A. Moro 5, 00185 Roma, Italy.
| | - Valerio Cataldi
- Dipartimento di Chimica, Università di Roma "La Sapienza", and Istituto CNR per i Sistemi Biologici (ISB-CNR), Sezione Meccanismi di Reazione, P.le A. Moro 5, 00185 Roma, Italy.
| | - Luigi Mandolini
- Dipartimento di Chimica, Università di Roma "La Sapienza", and Istituto CNR per i Sistemi Biologici (ISB-CNR), Sezione Meccanismi di Reazione, P.le A. Moro 5, 00185 Roma, Italy.
| | - Stefano Di Stefano
- Dipartimento di Chimica, Università di Roma "La Sapienza", and Istituto CNR per i Sistemi Biologici (ISB-CNR), Sezione Meccanismi di Reazione, P.le A. Moro 5, 00185 Roma, Italy.
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2
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Di Stefano S, Capocasa G, Mandolini L. Supramolecular Catalysts Featuring Crown Ethers as Recognition Units. European J Org Chem 2020. [DOI: 10.1002/ejoc.201901914] [Citation(s) in RCA: 15] [Impact Index Per Article: 3.8] [Reference Citation Analysis] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Indexed: 11/07/2022]
Affiliation(s)
- Stefano Di Stefano
- Dipartimento di Chimica; Università di Roma “La Sapienza”, and Istituto CNR per i Sistemi Biologici (ISB-CNR), Sezione Meccanismi di Reazione; P.le A. Moro 5 00185 Roma Italy
| | - Giorgio Capocasa
- Dipartimento di Chimica; Università di Roma “La Sapienza”, and Istituto CNR per i Sistemi Biologici (ISB-CNR), Sezione Meccanismi di Reazione; P.le A. Moro 5 00185 Roma Italy
| | - Luigi Mandolini
- Dipartimento di Chimica; Università di Roma “La Sapienza”, and Istituto CNR per i Sistemi Biologici (ISB-CNR), Sezione Meccanismi di Reazione; P.le A. Moro 5 00185 Roma Italy
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3
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Niedek D, Erb FR, Topp C, Seitz A, Wende RC, Eckhardt AK, Kind J, Herold D, Thiele CM, Schreiner PR. In Situ Switching of Site-Selectivity with Light in the Acetylation of Sugars with Azopeptide Catalysts. J Org Chem 2020; 85:1835-1846. [PMID: 31763833 DOI: 10.1021/acs.joc.9b01913] [Citation(s) in RCA: 9] [Impact Index Per Article: 2.3] [Reference Citation Analysis] [Abstract] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Indexed: 12/22/2022]
Abstract
We present a novel concept for the in situ control of site-selectivity of catalytic acetylations of partially protected sugars using light as external stimulus and oligopeptide catalysts equipped with an azobenzene moiety. The isomerizable azobenzene-peptide backbone defines the size and shape of the catalytic pocket, while the π-methyl-l-histidine (Pmh) moiety transfers the electrophile. Photoisomerization of the E- to the Z-azobenzene catalyst (monitored via NMR) with an LED (λ = 365 nm) drastically changes the chemical environment around the catalytically active Pmh moiety, so that the light-induced change in the catalyst shape alters site-selectivity. As a proof of principle, we employed (4,6-O-benzylidene)methyl-α-d-pyranosides, which provide a change in regioselectivity from 2:1 (E) to 1:5 (Z) for the monoacetylated products at room temperature. The validity of this new catalyst-design concept is further demonstrated with the regioselective acetylation of the natural product quercetin. In situ irradiation NMR spectroscopy was used to quantify photostationary states under continuous irradiation with UV light.
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Affiliation(s)
- Dominik Niedek
- Institute of Organic Chemistry , Justus Liebig University , Heinrich-Buff-Ring 17 , 35392 Giessen , Germany
| | - Frederik R Erb
- Institute of Organic Chemistry , Justus Liebig University , Heinrich-Buff-Ring 17 , 35392 Giessen , Germany
| | - Christopher Topp
- Institute of Organic Chemistry , Justus Liebig University , Heinrich-Buff-Ring 17 , 35392 Giessen , Germany
| | - Alexander Seitz
- Institute of Organic Chemistry , Justus Liebig University , Heinrich-Buff-Ring 17 , 35392 Giessen , Germany
| | - Raffael C Wende
- Institute of Organic Chemistry , Justus Liebig University , Heinrich-Buff-Ring 17 , 35392 Giessen , Germany
| | - André K Eckhardt
- Institute of Organic Chemistry , Justus Liebig University , Heinrich-Buff-Ring 17 , 35392 Giessen , Germany
| | - Jonas Kind
- Clemens-Schöpf-Institut für Organische Chemie und Biochemie , Technische Universität Darmstadt , Alarich-Weiss-Str. 16 , 64287 Darmstadt , Germany
| | - Dominik Herold
- Clemens-Schöpf-Institut für Organische Chemie und Biochemie , Technische Universität Darmstadt , Alarich-Weiss-Str. 16 , 64287 Darmstadt , Germany
| | - Christina M Thiele
- Clemens-Schöpf-Institut für Organische Chemie und Biochemie , Technische Universität Darmstadt , Alarich-Weiss-Str. 16 , 64287 Darmstadt , Germany
| | - Peter R Schreiner
- Institute of Organic Chemistry , Justus Liebig University , Heinrich-Buff-Ring 17 , 35392 Giessen , Germany
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4
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Abstract
Photoswitchable catalysis using organometallic complexes: a ligand design perspective.
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Affiliation(s)
- Zoraida Freixa
- Department of Applied Chemistry
- University of the Basque Country (UPV-EHU)
- San Sebastián
- Spain
- IKERBASQUE
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5
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Dorel R, Feringa BL. Photoswitchable catalysis based on the isomerisation of double bonds. Chem Commun (Camb) 2019; 55:6477-6486. [DOI: 10.1039/c9cc01891c] [Citation(s) in RCA: 73] [Impact Index Per Article: 14.6] [Reference Citation Analysis] [Abstract] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Indexed: 01/05/2023]
Abstract
Photoswitchable catalysis is a young but rapidly evolving field that offers great potential for non-invasive dynamic control of both activity and selectivity in catalysis. This Feature Article summarises the key developments accomplished over the past years through the incorporation of photoswitchable double bonds into the structure of catalytically competent molecules.
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Affiliation(s)
- Ruth Dorel
- Stratingh Institute for Chemistry
- Zernike Institute for Advanced Materials
- University of Groningen
- 9747 AG Groningen
- The Netherlands
| | - Ben L. Feringa
- Stratingh Institute for Chemistry
- Zernike Institute for Advanced Materials
- University of Groningen
- 9747 AG Groningen
- The Netherlands
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6
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Volchkov VV, Rusalov MV, Gostev FE, Shelaev IV, Nadtochenko VA, Vedernikov AI, Efremova AA, Kuz'mina LG, Gromov SP, Alfimov MV, Ya. Melnikov M. Complexation of bis-crown stilbene with alkali and alkaline-earth metal cations. Ultrafast excited state dynamics of the stilbene-viologen analogue charge transfer complex. J PHYS ORG CHEM 2017. [DOI: 10.1002/poc.3759] [Citation(s) in RCA: 5] [Impact Index Per Article: 0.7] [Reference Citation Analysis] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Indexed: 11/12/2022]
Affiliation(s)
- Valery V. Volchkov
- Chemistry Department; M. V. Lomonosov Moscow State University; Moscow Russian Federation
| | - Mikhail V. Rusalov
- Chemistry Department; M. V. Lomonosov Moscow State University; Moscow Russian Federation
| | - Fedor E. Gostev
- N. N. Semenov Institute of Chemical Physics; Russian Academy of Sciences; Moscow Russian Federation
| | - Ivan V. Shelaev
- N. N. Semenov Institute of Chemical Physics; Russian Academy of Sciences; Moscow Russian Federation
| | - Viktor A. Nadtochenko
- Chemistry Department; M. V. Lomonosov Moscow State University; Moscow Russian Federation
- N. N. Semenov Institute of Chemical Physics; Russian Academy of Sciences; Moscow Russian Federation
| | - Artem I. Vedernikov
- Photochemistry Center; Russian Academy of Sciences; Moscow Russian Federation
| | - Asya A. Efremova
- Photochemistry Center; Russian Academy of Sciences; Moscow Russian Federation
| | - Lyudmila G. Kuz'mina
- N. S. Kurnakov Institute of General and Inorganic Chemistry; Russian Academy of Sciences; Moscow Russian Federation
| | - Sergey P. Gromov
- Chemistry Department; M. V. Lomonosov Moscow State University; Moscow Russian Federation
- Photochemistry Center; Russian Academy of Sciences; Moscow Russian Federation
| | - Michael V. Alfimov
- Photochemistry Center; Russian Academy of Sciences; Moscow Russian Federation
| | - Mikhail Ya. Melnikov
- Chemistry Department; M. V. Lomonosov Moscow State University; Moscow Russian Federation
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7
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Vlatković M, Collins BSL, Feringa BL. Dynamic Responsive Systems for Catalytic Function. Chemistry 2016; 22:17080-17111. [DOI: 10.1002/chem.201602453] [Citation(s) in RCA: 90] [Impact Index Per Article: 11.3] [Reference Citation Analysis] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Received: 05/23/2016] [Indexed: 12/22/2022]
Affiliation(s)
- Matea Vlatković
- Stratingh Institute for Chemistry; Synthetic Organic Chemistry Unit; Faculty of Mathematics and Natural Sciences; University of Groningen; Nijenborg 4 9747 Groningen The Netherlands
| | - Beatrice S. L. Collins
- Stratingh Institute for Chemistry; Synthetic Organic Chemistry Unit; Faculty of Mathematics and Natural Sciences; University of Groningen; Nijenborg 4 9747 Groningen The Netherlands
| | - Ben L. Feringa
- Stratingh Institute for Chemistry; Synthetic Organic Chemistry Unit; Faculty of Mathematics and Natural Sciences; University of Groningen; Nijenborg 4 9747 Groningen The Netherlands
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Affiliation(s)
- Matthias Otte
- Organic Chemistry & Catalysis, Debye Institute for Nanomaterials Science, Universiteit Utrecht, Universiteitsweg 99, 3584 CG Utrecht, The Netherlands
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9
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Kumagai N, Shibasaki M. Catalytic chemical transformations with conformationally dynamic catalytic systems. Catal Sci Technol 2013. [DOI: 10.1039/c2cy20257c] [Citation(s) in RCA: 38] [Impact Index Per Article: 3.5] [Reference Citation Analysis] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Indexed: 11/21/2022]
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10
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Lepore SD, Bhunia AK, Mondal D, Cohn PC, Lefkowitz C. Rapid conversion of hindered arylsulfonates to alkyl chlorides with retention of configuration. J Org Chem 2007; 71:3285-6. [PMID: 16599631 PMCID: PMC2527058 DOI: 10.1021/jo052333q] [Citation(s) in RCA: 30] [Impact Index Per Article: 1.8] [Reference Citation Analysis] [Abstract] [MESH Headings] [Grants] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Indexed: 11/28/2022]
Abstract
Arylsulfonates of hindered secondary alcohols are converted to the corresponding alkyl chlorides very rapidly and in good yields in the presence of titanium tetrachloride at low temperatures. These reactions proceed with exclusive retention of configuration.
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Affiliation(s)
- Salvatore D Lepore
- Department of Chemistry, Florida Atlantic University, Boca Raton, Florida 33431-0991, USA.
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11
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Luk’yanenko NG, Pastushok VN, Botoshanskii MM, Fonar’ MS, Simonov YA. Bis[(benzo-18-crown-6)-4,5-ylmethyl]-1,3,4,6-diphenylglycoluril: The first representative of a new class of bis(crown ethers) and the synthesis and crystal structure of its complex with sodium picrate. RUSS J INORG CHEM+ 2006. [DOI: 10.1134/s0036023606120102] [Citation(s) in RCA: 1] [Impact Index Per Article: 0.1] [Reference Citation Analysis] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Indexed: 11/23/2022]
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12
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Abstract
[Chemical reaction: See text] The synthesis and unique reactivity of a series of arylsulfonate-based nucleophile assisting leaving groups (NALG) containing oligomeric ether units (including crown ethers) attached to the arylsulfonyl ring in the ortho orientation are described. The reactions of a variety of these ether-containing alkyl sulfonates with metal halides proceeded at substantially greater rates than electronically similar sulfonates. These ether-containing leaving groups also displayed marked selectivity for lithium halides relative to the corresponding sodium and potassium salts in nucleophilic displacement reactions.
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Affiliation(s)
- Salvatore D Lepore
- Department of Chemistry, Florida Atlantic University, Boca Raton, Florida 33431-0991, USA.
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13
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Huang C, Bassani DM. Exciting Supramolecular Architectures: Light‐Induced Processes and Synthetic Transformations in Noncovalent Assemblies. European J Org Chem 2005. [DOI: 10.1002/ejoc.200500238] [Citation(s) in RCA: 49] [Impact Index Per Article: 2.6] [Reference Citation Analysis] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Indexed: 11/07/2022]
Affiliation(s)
- Chih‐Hao Huang
- Centre de Recherche en Chimie Moléculaire, Laboratoire de Chimie Organique et Organométallique, CNRS UMR 5802, Université Bordeaux 1, 33405 Talence, France, Fax: +335‐4000‐2827
| | - Dario M. Bassani
- Centre de Recherche en Chimie Moléculaire, Laboratoire de Chimie Organique et Organométallique, CNRS UMR 5802, Université Bordeaux 1, 33405 Talence, France, Fax: +335‐4000‐2827
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14
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Cacciapaglia R, Casnati A, Mandolini L, Reinhoudt DN, Salvio R, Sartori A, Ungaro R. Calix[4]arene-Based Zn2+ Complexes as Shape- and Size-Selective Catalysts of Ester Cleavage. J Org Chem 2005; 70:5398-402. [PMID: 15989318 DOI: 10.1021/jo050196r] [Citation(s) in RCA: 28] [Impact Index Per Article: 1.5] [Reference Citation Analysis] [Abstract] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Indexed: 11/28/2022]
Abstract
[structures: see text] The kinetics of methanolysis of a number of esters endowed with a carboxylate anchoring group have been investigated in the presence of di- and trinuclear Zn2+ complexes of calix[4]arenes functionalized at the upper rim with nitrogen ligands. The results (i) emphasize the importance of a good match between ester size and intermetal distance, (ii) reveal a substrate independent superiority of the 1,2-vicinal dinuclear catalyst 1-Zn2 to its 1,3-distal regioisomer 2-Zn2, and (iii) provide further evidence for the concurrence of the three metal ions of 3-Zn3 in the catalytic mechanism.
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Affiliation(s)
- Roberta Cacciapaglia
- Dipartimento di Chimica and IMC-CNR Sezione Meccanismi di Reazione, Università di Roma La Sapienza, Box 34, Roma 62, 00185 Roma, Italy
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15
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Vedernikov AI, Basok SS, Gromov SP, Kuz’mina LG, Avakyan VG, Lobova NA, Kulygina EY, Titkov TV, Strelenko YA, Ivanov EI, Howard JAK, Alfimov MV. Synthesis and Structure of Bis-crown-Containing Stilbenes. RUSSIAN JOURNAL OF ORGANIC CHEMISTRY 2005. [DOI: 10.1007/s11178-005-0255-2] [Citation(s) in RCA: 13] [Impact Index Per Article: 0.7] [Reference Citation Analysis] [Track Full Text] [Subscribe] [Scholar Register] [Indexed: 10/25/2022]
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Cacciapaglia R, Casnati A, Mandolini L, Reinhoudt DN, Salvio R, Sartori A, Ungaro R. Di- and Trinuclear Zn2+ Complexes of Calix[4]arene Based Ligands as Catalysts of Acyl and Phosphoryl Transfer Reactions. J Org Chem 2004; 70:624-30. [PMID: 15651810 DOI: 10.1021/jo0487350] [Citation(s) in RCA: 49] [Impact Index Per Article: 2.5] [Reference Citation Analysis] [Abstract] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Indexed: 11/29/2022]
Abstract
The calix[4]arene scaffold, blocked in the cone conformation by proper alkylation of the lower rim hydroxyls, was used as a convenient molecular platform for the design of bi- and trimetallic Zn2+ catalysts. The catalytic activity of the Zn2+ complexes of calix[4]arenes decorated at the 1,2-, 1,3-, and 1,2,3-positions of the upper rim with 2,6-bis[(dimethylamino)methyl]pyridine units were investigated in the cleavage of ester 6 and of the RNA model compound HPNP. High rate enhancements, up to 4 orders of magnitude, were observed in a number of catalyst-substrate combinations. Interestingly the order of catalytic efficiency among regioisomeric dinuclear complexes in the cleavage of ester 6 is 1,2-vicinal >> 1,3-distal, but it is reversed in the reaction of HPNP. The higher efficiency of trinuclear compared to dinuclear complexes provides an indication of the cooperation of three Zn2+ ions in the catalytic mechanism.
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Affiliation(s)
- Roberta Cacciapaglia
- Dipartimento di Chimica and IMC-CNR Sezione Meccanismi di Reazione, Università di Roma La Sapienza, Box 34-Roma 62, 00185 Roma, Italy
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Cacciapaglia R, Casnati A, Di Stefano S, Mandolini L, Paolemili D, Reinhoudt DN, Sartori A, Ungaro R. Dinuclear Barium(II) Complexes Based on a Calix[4]arene Scaffold as Catalysts of Acyl Transfer. Chemistry 2004; 10:4436-42. [PMID: 15378621 DOI: 10.1002/chem.200400294] [Citation(s) in RCA: 23] [Impact Index Per Article: 1.2] [Reference Citation Analysis] [Abstract] [MESH Headings] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Indexed: 11/06/2022]
Abstract
Two novel regioisomeric calix[4]arene derivatives (2 and 3), decorated with two aza[18]crown-6 units at vicinal (1,2) or diagonal (1,3) positions of the upper rim, were synthesized. The catalytic activities of their dinuclear Ba2+ complexes were investigated in the ethanolysis of esters 8-11, endowed with a carboxylate anchoring group. Major results are as follows: 1) the two metal ions in the dinuclear catalysts work together in a cooperative fashion; 2) the vicinal calix[4]arene catalyst 2 is far superior to its diagonal regioisomer 3 in the reactions of all of the investigated esters; and 3) the distance between the carboxylate and ester carbonyl, which increases regularly from 8 to 11, influences reactivity of catalytic ester cleavage in a way that is decidedly suggestive of the importance of a good match between ester size and metal-to-metal distance. However, the superiority of the vicinal catalyst 2 relative to 3 cannot be explained on the basis of the putative match of ester size to intermetal distance, thus providing an indication that additional, still poorly understood effects may contribute significantly to catalytic efficiency.
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Affiliation(s)
- Roberta Cacciapaglia
- IMC CNR Sezione Meccanismi di Reazione and Dipartimento di Chimica, Università La Sapienza, P.le A. Moro 5, Box 34-Roma 62, 00185 Roma, Italy
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Cacciapaglia R, Di Stefano S, Mandolini L. The bis-barium complex of a butterfly crown ether as a phototunable supramolecular catalyst. J Am Chem Soc 2003; 125:2224-7. [PMID: 12590551 DOI: 10.1021/ja029331x] [Citation(s) in RCA: 128] [Impact Index Per Article: 6.1] [Reference Citation Analysis] [Abstract] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Indexed: 11/28/2022]
Abstract
Reversible phototuning of the catalytic efficiency of the bis-barium complex of azobis(benzo-18-crown-6) in the basic ethanolysis of anilide derivatives has been achieved by light-induced cis right arrow over left arrow trans interconversion of the azobenzene spacer unit of the catalyst. The geometry of the productive catalyst-substrate complex is more favorable when the concave cis form of the catalyst is involved. Continuous photoregulation of the catalytic activity at any intermediate value between the "HIGH" and "LOW" levels was achieved by proper adjustment of the excitation wavelength or the irradiation time. The complete and relatively fast interconvertibility of photostationary states allowed the activity of the catalyst to be repeatedly photoswitched "HIGH" and "LOW" in the course of the same run.
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Affiliation(s)
- Roberta Cacciapaglia
- Dipartimento di Chimica and ICCOM CNR-Sezione di Roma, Università La Sapienza, Box 34-ROMA 62, 00185 Roma, Italy.
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