1
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Hetzert M, Yuan Q, Cao W, Wang XB, Hempelmann J, Dronskowski R, Ruschewitz U. Li 2[SeC 2Se]·2NH 3: A Crystalline Ammoniate with a –Se–C≡C–Se – Dianion. Inorg Chem 2022; 61:18769-18778. [DOI: 10.1021/acs.inorgchem.2c03296] [Citation(s) in RCA: 0] [Impact Index Per Article: 0] [Reference Citation Analysis] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Indexed: 11/12/2022]
Affiliation(s)
- Marc Hetzert
- Department of Chemistry, Institute of Inorganic Chemistry, University of Cologne, Greinstraße 6, 50939Cologne, Germany
| | - Qinqin Yuan
- Physical Science Division, Pacific Northwest National Laboratory, Richland, Washington99352, United States
| | - Wenjin Cao
- Physical Science Division, Pacific Northwest National Laboratory, Richland, Washington99352, United States
| | - Xue-Bin Wang
- Physical Science Division, Pacific Northwest National Laboratory, Richland, Washington99352, United States
| | - Jan Hempelmann
- Institute of Inorganic Chemistry, RWTH Aachen University, 52056Aachen, Germany
| | - Richard Dronskowski
- Institute of Inorganic Chemistry, RWTH Aachen University, 52056Aachen, Germany
| | - Uwe Ruschewitz
- Department of Chemistry, Institute of Inorganic Chemistry, University of Cologne, Greinstraße 6, 50939Cologne, Germany
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2
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Beletskaya IP, Ananikov VP. Transition-Metal-Catalyzed C–S, C–Se, and C–Te Bond Formations via Cross-Coupling and Atom-Economic Addition Reactions. Achievements and Challenges. Chem Rev 2022; 122:16110-16293. [DOI: 10.1021/acs.chemrev.1c00836] [Citation(s) in RCA: 0] [Impact Index Per Article: 0] [Reference Citation Analysis] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Indexed: 11/30/2022]
Affiliation(s)
- Irina P. Beletskaya
- Chemistry Department, Lomonosov Moscow State University, Vorob’evy gory, Moscow 119899, Russia
| | - Valentine P. Ananikov
- Zelinsky Institute of Organic Chemistry, Russian Academy of Sciences, Leninsky Prospect 47, Moscow 119991, Russia
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3
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Ishigaki Y, Asai K, Jacquot de Rouville HP, Shimajiri T, Hu J, Heitz V, Suzuki T. Solid-State Assembly by Chelating Chalcogen Bonding in Quinodimethane Tetraesters Fused with a Chalcogenadiazole. Chempluschem 2022; 87:e202200075. [PMID: 35420722 DOI: 10.1002/cplu.202200075] [Citation(s) in RCA: 0] [Impact Index Per Article: 0] [Reference Citation Analysis] [Abstract] [Key Words] [Grants] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Received: 03/02/2022] [Revised: 03/23/2022] [Indexed: 11/09/2022]
Abstract
In contrast to p-quinodimethane tetraesters, which undergo facile polymerization due to their diradical character, newly synthesized 1 and 2 consisting of a chalcogenadiazole fused to a p-naphthoquinodimethane tetraester are thermodynamically stable due to butterfly-shaped deformation. Such a folded molecular structure is also favorable for chalcogen bond (ChB) formation through intermolecular close contacts between a chalcogen atom (E: Se or S) and the oxygen atoms of ester groups in a crystal. The less-explored chelating-ChB through a C=O⋅⋅⋅E⋅⋅⋅O=C contact [Se⋅⋅⋅O: 2.94-3.37 Å] is the key supramolecular synthon for the formation of a one-dimensional rod-like assembly in a crystal, which is commonly observed in selenadiazole-tetraesters (1) with OMe, OEt, and OiPr groups. The formation of inclusion cavities between the rods shows that 1 could serve as solid-state host molecules for clathrate formation, as found in a hexane-solvated crystal. In contrast, thiadiazole-tetraesters (2) are less suitable for the formation of a rod-like assembly since the ChB involving S is less effective, and thus is overwhelmed by weak hydrogen bonds through C-H⋅⋅⋅O contacts.
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Affiliation(s)
- Yusuke Ishigaki
- Department of Chemistry, Faculty of Science, Hokkaido University, Sapporo, 060-0810, Japan
| | - Kota Asai
- Department of Chemistry, Faculty of Science, Hokkaido University, Sapporo, 060-0810, Japan
| | - Henri-Pierre Jacquot de Rouville
- Laboratoire de Synthèse des Assemblages Moléculaires Multifonctionnels, Institut de Chimie de Strasbourg, CNRS UMR 7177, Université de Strasbourg, 4, rue Blaise Pascal, 67000, Strasbourg, France
| | - Takuya Shimajiri
- Department of Chemistry, Faculty of Science, Hokkaido University, Sapporo, 060-0810, Japan
| | - Johnny Hu
- Laboratoire de Synthèse des Assemblages Moléculaires Multifonctionnels, Institut de Chimie de Strasbourg, CNRS UMR 7177, Université de Strasbourg, 4, rue Blaise Pascal, 67000, Strasbourg, France
| | - Valérie Heitz
- Laboratoire de Synthèse des Assemblages Moléculaires Multifonctionnels, Institut de Chimie de Strasbourg, CNRS UMR 7177, Université de Strasbourg, 4, rue Blaise Pascal, 67000, Strasbourg, France
| | - Takanori Suzuki
- Department of Chemistry, Faculty of Science, Hokkaido University, Sapporo, 060-0810, Japan
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4
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Ishigaki Y, Shimomura K, Asai K, Shimajiri T, Akutagawa T, Fukushima T, Suzuki T. Chalcogen Bond versus Halogen Bond: Changing Contributions in Determining the Crystal Packing of Dihalobenzochalcogenadiazoles. BULLETIN OF THE CHEMICAL SOCIETY OF JAPAN 2022. [DOI: 10.1246/bcsj.20220008] [Citation(s) in RCA: 3] [Impact Index Per Article: 1.5] [Reference Citation Analysis] [Track Full Text] [Subscribe] [Scholar Register] [Indexed: 11/12/2022]
Affiliation(s)
- Yusuke Ishigaki
- Department of Chemistry, Faculty of Science, Hokkaido University, Sapporo 060-0810, Japan
| | - Kai Shimomura
- Department of Chemistry, Faculty of Science, Hokkaido University, Sapporo 060-0810, Japan
| | - Kota Asai
- Department of Chemistry, Faculty of Science, Hokkaido University, Sapporo 060-0810, Japan
| | - Takuya Shimajiri
- Department of Chemistry, Faculty of Science, Hokkaido University, Sapporo 060-0810, Japan
| | - Tomoyuki Akutagawa
- Institute of Multidisiplinary Research for Advanced Materials, Tohoku University, Sendai, 980-8577 Japan
| | - Takanori Fukushima
- Laboratory for Chemistry and Life Science, Institute of Innovative Research, Tokyo Institute of Technology, Yokohama 226-8503, Japan
| | - Takanori Suzuki
- Department of Chemistry, Faculty of Science, Hokkaido University, Sapporo 060-0810, Japan
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5
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Ishigaki Y, Asai K, Shimajiri T, Suzuki T. [1,2,5]Chalcogenadiazole-fused Dicyanonaphthoquinodiimines: Larger Contribution from Chalcogen Bond than Weak Hydrogen Bond in Determining Crystal Structures. CHEM LETT 2021. [DOI: 10.1246/cl.210095] [Citation(s) in RCA: 2] [Impact Index Per Article: 0.7] [Reference Citation Analysis] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Indexed: 11/12/2022]
Affiliation(s)
- Yusuke Ishigaki
- Department of Chemistry, Faculty of Science, Hokkaido University, N10, W8, North-ward, Sapporo, Hokkaido 060-0810, Japan
| | - Kota Asai
- Department of Chemistry, Faculty of Science, Hokkaido University, N10, W8, North-ward, Sapporo, Hokkaido 060-0810, Japan
| | - Takuya Shimajiri
- Department of Chemistry, Faculty of Science, Hokkaido University, N10, W8, North-ward, Sapporo, Hokkaido 060-0810, Japan
| | - Takanori Suzuki
- Department of Chemistry, Faculty of Science, Hokkaido University, N10, W8, North-ward, Sapporo, Hokkaido 060-0810, Japan
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6
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Wang R, Lu Y, Xu Z, Liu H. Triangular Interchalcogen Interactions: A Joint Crystallographic Data Analysis and Theoretical Study. J Phys Chem A 2021; 125:4173-4183. [PMID: 33957751 DOI: 10.1021/acs.jpca.1c03244] [Citation(s) in RCA: 4] [Impact Index Per Article: 1.3] [Reference Citation Analysis] [Abstract] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Indexed: 11/28/2022]
Abstract
Noncovalent chalcogen-chalcogen interactions are being actively investigated from both crystallographic and theoretical viewpoints in recent years. According to our search of the Cambridge Structural Database (CSD), a huge number of crystal structures containing triangular Ch3 synthons were extracted. On the basis of the results of the CSD survey, a series of trimeric complexes of organic divalent chalcogen molecules were selected to model such interaction motifs. Similar to that in conventional chalcogen bonds, triangular interchalcogen interactions become gradually stronger along the sequence of Ch = S, Se, Te. Particularly, hydrogen bonds between the chalcogen centers and the H atoms in the substituents occur, which play a significant role in stabilizing the Ch3 motifs in the trimers. Through multibody energy calculations, the complexes under study exhibit no or only weak cooperativity. Finally, the differences between the Ch3 interaction motifs and the well-studied windmill X3 bonding (X means halogen and this is halogen bond) patterns were elucidated.
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Affiliation(s)
- Ranran Wang
- Key Laboratory for Advanced Materials, School of Chemistry & Molecular Engineering, East China University of Science and Technology, Shanghai 200237, China
| | - Yunxiang Lu
- Key Laboratory for Advanced Materials, School of Chemistry & Molecular Engineering, East China University of Science and Technology, Shanghai 200237, China
| | - Zhijian Xu
- Drug Discovery and Design Center, Shanghai Institute of Materia Medica, Chinese Academy of Sciences, Shanghai 201203, China
| | - Honglai Liu
- Key Laboratory for Advanced Materials, School of Chemistry & Molecular Engineering, East China University of Science and Technology, Shanghai 200237, China
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7
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Bursch M, Kunze L, Vibhute AM, Hansen A, Sureshan KM, Jones PG, Grimme S, Werz DB. Quantification of Noncovalent Interactions in Azide-Pnictogen, -Chalcogen, and -Halogen Contacts. Chemistry 2021; 27:4627-4639. [PMID: 33078853 PMCID: PMC7986704 DOI: 10.1002/chem.202004525] [Citation(s) in RCA: 21] [Impact Index Per Article: 7.0] [Reference Citation Analysis] [Abstract] [Key Words] [Track Full Text] [Download PDF] [Figures] [Journal Information] [Subscribe] [Scholar Register] [Received: 10/09/2020] [Indexed: 01/18/2023]
Abstract
The noncovalent interactions between azides and oxygen‐containing moieties are investigated through a computational study based on experimental findings. The targeted synthesis of organic compounds with close intramolecular azide–oxygen contacts yielded six new representatives, for which X‐ray structures were determined. Two of those compounds were investigated with respect to their potential conformations in the gas phase and a possible significantly shorter azide–oxygen contact. Furthermore, a set of 44 high‐quality, gas‐phase computational model systems with intermolecular azide–pnictogen (N, P, As, Sb), –chalcogen (O, S, Se, Te), and –halogen (F, Cl, Br, I) contacts are compiled and investigated through semiempirical quantum mechanical methods, density functional approximations, and wave function theory. A local energy decomposition (LED) analysis is applied to study the nature of the noncovalent interaction. The special role of electrostatic and London dispersion interactions is discussed in detail. London dispersion is identified as a dominant factor of the azide–donor interaction with mean London dispersion energy‐interaction energy ratios of 1.3. Electrostatic contributions enhance the azide–donor coordination motif. The association energies range from −1.00 to −5.5 kcal mol−1.
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Affiliation(s)
- Markus Bursch
- Mulliken Center for Theoretical Chemistry, Institut für Physikalische und Theoretische Chemie, Universität Bonn, Beringstraße 4, 53115, Bonn, Germany
| | - Lukas Kunze
- Mulliken Center for Theoretical Chemistry, Institut für Physikalische und Theoretische Chemie, Universität Bonn, Beringstraße 4, 53115, Bonn, Germany
| | - Amol M Vibhute
- Technische Universität Braunschweig, Institut für Organische Chemie, Hagenring 30, 38106, Braunschweig, Germany
| | - Andreas Hansen
- Mulliken Center for Theoretical Chemistry, Institut für Physikalische und Theoretische Chemie, Universität Bonn, Beringstraße 4, 53115, Bonn, Germany
| | - Kana M Sureshan
- School of Chemistry, IISER Thiruvananthapuram, Kerala, 695551, India
| | - Peter G Jones
- Technische Universität Braunschweig, Institut für Anorganische und Analytische Chemie, Hagenring 30, 38106, Braunschweig, Germany
| | - Stefan Grimme
- Mulliken Center for Theoretical Chemistry, Institut für Physikalische und Theoretische Chemie, Universität Bonn, Beringstraße 4, 53115, Bonn, Germany
| | - Daniel B Werz
- Technische Universität Braunschweig, Institut für Organische Chemie, Hagenring 30, 38106, Braunschweig, Germany
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8
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Kolb S, Oliver GA, Werz DB. Chemistry Evolves, Terms Evolve, but Phenomena Do Not Evolve: From Chalcogen-Chalcogen Interactions to Chalcogen Bonding. Angew Chem Int Ed Engl 2020; 59:22306-22310. [PMID: 32969111 DOI: 10.1002/anie.202007314] [Citation(s) in RCA: 60] [Impact Index Per Article: 15.0] [Reference Citation Analysis] [Abstract] [Key Words] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Received: 05/20/2020] [Indexed: 11/08/2022]
Abstract
Chalcogen bonding is important in numerous aspects of chemistry, both in the solid state and in solution. Surveying the literature, it becomes clear that during its rebranding from chalcogen-chalcogen interactions, some parts of the community have somewhat neglected to recall its discovery and the initial studies referring to it in its previous guise. In this Viewpoint, we trace the path of research into this phenomenon, from its discovery, through its renaming, and to some of the varied and interesting chemistry it has led to so far, ranging from crystal engineering through supramolecular assembly to modern catalysis.
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Affiliation(s)
- Simon Kolb
- Technische Universität Braunschweig, Institut für Organische Chemie, Hagenring 30, 38106, Braunschweig, Germany
| | - Gwyndaf A Oliver
- Technische Universität Braunschweig, Institut für Organische Chemie, Hagenring 30, 38106, Braunschweig, Germany
| | - Daniel B Werz
- Technische Universität Braunschweig, Institut für Organische Chemie, Hagenring 30, 38106, Braunschweig, Germany
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9
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Kolb S, Oliver GA, Werz DB. Chemie und Begriffe entwickeln sich, aber Phänomene nicht: Von Chalkogen‐Chalkogen‐Wechselwirkungen zu “Chalcogen Bonding”. Angew Chem Int Ed Engl 2020. [DOI: 10.1002/ange.202007314] [Citation(s) in RCA: 19] [Impact Index Per Article: 4.8] [Reference Citation Analysis] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Indexed: 12/14/2022]
Affiliation(s)
- Simon Kolb
- Technische Universität Braunschweig Institut für Organische Chemie Hagenring 30 38106 Braunschweig Deutschland
| | - Gwyndaf A. Oliver
- Technische Universität Braunschweig Institut für Organische Chemie Hagenring 30 38106 Braunschweig Deutschland
| | - Daniel B. Werz
- Technische Universität Braunschweig Institut für Organische Chemie Hagenring 30 38106 Braunschweig Deutschland
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10
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Rodewald M, Rautiainen JM, Niksch T, Görls H, Oilunkaniemi R, Weigand W, Laitinen RS. Chalcogen-Bonding Interactions in Telluroether Heterocycles [Te(CH 2 ) m ] n (n=1-4; m=3-7). Chemistry 2020; 26:13806-13818. [PMID: 32608024 PMCID: PMC7702089 DOI: 10.1002/chem.202002510] [Citation(s) in RCA: 3] [Impact Index Per Article: 0.8] [Reference Citation Analysis] [Abstract] [Key Words] [Grants] [Track Full Text] [Download PDF] [Figures] [Journal Information] [Subscribe] [Scholar Register] [Received: 05/22/2020] [Indexed: 12/01/2022]
Abstract
The Te⋅⋅⋅Te secondary bonding interactions (SBIs) in solid cyclic telluroethers were explored by preparing and structurally characterizing a series of [Te(CH2 )m ]n (n=1-4; m=3-7) species. The SBIs in 1,7-Te2 (CH2 )10 , 1,8-Te2 (CH2 )12 , 1,5,9-Te3 (CH2 )9 , 1,8,15-Te3 (CH2 )18 , 1,7,13,19-Te4 (CH2 )20 , 1,8,15,22-Te4 (CH2 )24 and 1,9,17,25-Te4 (CH2 )28 lead to tubular packing of the molecules, as has been observed previously for related thio- and selenoether rings. The nature of the intermolecular interactions was explored by solid-state PBE0-D3/pob-TZVP calculations involving periodic boundary conditions. The molecular packing in 1,7,13,19-Te4 (CH2 )20 , 1,8,15,22-Te4 (CH2 )24 and 1,9,17,25-Te4 (CH2 )28 forms infinite shafts. The electron densities at bond critical points indicate a narrow range of Te⋅⋅⋅Te bond orders of 0.12-0.14. The formation of the shafts can be rationalized by frontier orbital overlap and charge transfer.
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Affiliation(s)
- Marko Rodewald
- Institut für Anorganische und Analytische ChemieFriedrich-Schiller-Universität JenaHumboldt Strasse 807743JenaGermany
| | - J. Mikko Rautiainen
- Department of Chemistry, Nanoscience CenterUniversity of JyväskyläP.O. Box 3540014JyväskyläFinland
| | - Tobias Niksch
- Klinik für NuklearmedizinUniversitätsklinikum JenaAm Klinikum 107747JenaGermany
| | - Helmar Görls
- Institut für Anorganische und Analytische ChemieFriedrich-Schiller-Universität JenaHumboldt Strasse 807743JenaGermany
| | - Raija Oilunkaniemi
- Laboratory of Inorganic Chemistry, Environmental and Chemical EngineeringUniversity of OuluP.O. Box 300090014OuluFinland
| | - Wolfgang Weigand
- Institut für Anorganische und Analytische ChemieFriedrich-Schiller-Universität JenaHumboldt Strasse 807743JenaGermany
| | - Risto S. Laitinen
- Laboratory of Inorganic Chemistry, Environmental and Chemical EngineeringUniversity of OuluP.O. Box 300090014OuluFinland
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11
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Bürger M, Röttger SH, Loch MN, Jones PG, Werz DB. Pd-Catalyzed Cyanoselenylation of Internal Alkynes: Access to Tetrasubstituted Selenoenol Ethers. Org Lett 2020; 22:5025-5029. [PMID: 32610926 DOI: 10.1021/acs.orglett.0c01582] [Citation(s) in RCA: 22] [Impact Index Per Article: 5.5] [Reference Citation Analysis] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Indexed: 12/14/2022]
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12
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Gleiter R, Haberhauer G, Rominger F. A New Look on Larger Sulfur and Selenium Rings – Dispersion Forces and Shapes of Larger Cycles. Eur J Inorg Chem 2019. [DOI: 10.1002/ejic.201900744] [Citation(s) in RCA: 11] [Impact Index Per Article: 2.2] [Reference Citation Analysis] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Indexed: 11/09/2022]
Affiliation(s)
- Rolf Gleiter
- Organisch‐Chemisches Institut Universität Heidelberg Im Neuenheimer Feld 270 69120 Heidelberg Germany
| | - Gebhard Haberhauer
- Institut für Organische Chemie Universität Duisburg‐Essen Universitätsstr. 7 45117 Essen Germany
| | - Frank Rominger
- Organisch‐Chemisches Institut Universität Heidelberg Im Neuenheimer Feld 270 69120 Heidelberg Germany
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13
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Vogel L, Wonner P, Huber SM. Chalcogen Bonding: An Overview. Angew Chem Int Ed Engl 2018; 58:1880-1891. [PMID: 30225899 DOI: 10.1002/anie.201809432] [Citation(s) in RCA: 364] [Impact Index Per Article: 60.7] [Reference Citation Analysis] [Abstract] [Key Words] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Received: 08/15/2018] [Indexed: 01/23/2023]
Abstract
In the last few decades, "unusual" noncovalent interactions like anion-π and halogen bonding have emerged as interesting alternatives to the ubiquitous hydrogen bonding in many research areas. This is also true, to a somewhat lesser extent, for chalcogen bonding, the noncovalent interaction involving Lewis acidic chalcogen centers. Herein, we aim to provide an overview on the use of chalcogen bonding in crystal engineering and in solution, with a focus on the recent developments concerning intermolecular chalcogen bonding in solution-phase applications. In the solid phase, chalcogen bonding has been used for the construction of nano-sized structures and the self-assembly of sophisticated self-complementary arrays. In solution, until very recently applications mostly focused on intramolecular interactions which stabilized the conformation of intermediates or reagents. In the last few years, intermolecular chalcogen bonding has increasingly also been exploited in solution, most notably in anion recognition and transport as well as in organic synthesis and organocatalysis.
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Affiliation(s)
- Lukas Vogel
- Faculty of Chemistry and Biochemistry, Ruhr-University Bochum, Universitätsstraße 150, 44801, Bochum, Germany
| | - Patrick Wonner
- Faculty of Chemistry and Biochemistry, Ruhr-University Bochum, Universitätsstraße 150, 44801, Bochum, Germany
| | - Stefan M Huber
- Faculty of Chemistry and Biochemistry, Ruhr-University Bochum, Universitätsstraße 150, 44801, Bochum, Germany
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14
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Affiliation(s)
- Lukas Vogel
- Fakultät für Chemie und Biochemie; Ruhr-Universität Bochum; Universitätsstraße 150 44801 Bochum Deutschland
| | - Patrick Wonner
- Fakultät für Chemie und Biochemie; Ruhr-Universität Bochum; Universitätsstraße 150 44801 Bochum Deutschland
| | - Stefan M. Huber
- Fakultät für Chemie und Biochemie; Ruhr-Universität Bochum; Universitätsstraße 150 44801 Bochum Deutschland
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15
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Gleiter R, Haberhauer G, Werz DB, Rominger F, Bleiholder C. From Noncovalent Chalcogen-Chalcogen Interactions to Supramolecular Aggregates: Experiments and Calculations. Chem Rev 2018; 118:2010-2041. [PMID: 29420879 DOI: 10.1021/acs.chemrev.7b00449] [Citation(s) in RCA: 200] [Impact Index Per Article: 33.3] [Reference Citation Analysis] [Abstract] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Indexed: 11/28/2022]
Abstract
This review considers noncovalent bonds between divalent chalcogen centers. In the first part we present X-ray data taken from the solid state structures of dimethyl- and diphenyl-dichalcogenides as well as oligoalkynes kept by alkyl-sulfur, -selenium, and -tellurium groups. Furthermore, we analyzed the solid state structures of medium sized (12-24 ring size) selenium coronands and medium to large rings with alkyne and alkene units between two chalcogen centers. The crystal structures of the cyclic structures revealed columnar stacks with close contacts between neighboring rings via noncovalent interactions between the chalcogen centers. To get larger space within the cavities, rings with diyne units between the chalcogen centers were used. These molecules showed channel-like structures in the solid state. The flexibility of the rings permits inclusion of guest molecules such as five-membered heterocycles and aromatic six-membered rings. In the second part we discuss the results of quantum chemical calculations. To treat properly the noncovalent bonding between chalcogens, we use diffuse augmented split valence basis sets in combination with electron correlation methods. Our model substances were 16 dimers consisting of two Me-X-Me (X = O, S, Se, Te) pairs and dimers of Me-X-Me/Me-X-CN (X = O, S, Se, Te) pairs. The calculations show the anticipated increase of the interaction energy from (Me-O-Me)2 (-2.15 kcal/mol) to (Me-O-Me/Me-Te-CN) (-6.59 kcal/mol). An analysis by the NBO method reveals that in the case of the chalcogen centers O and S the hydrogen bridges between the molecules dominate. However, in the case of Se and Te the major bonding between the pairs originates from dispersion forces between the chalcogen centers. It varies between -1.7 and -4.0 kcal/mol.
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Affiliation(s)
- Rolf Gleiter
- Organisch-Chemisches Institut, Universität Heidelberg , Im Neuenheimer Feld 270, D-69120 Heidelberg, Germany
| | - Gebhard Haberhauer
- Institut für Organische Chemie, Universität Duisburg-Essen , Universitätsstraße 7, D-45117 Essen, Germany
| | - Daniel B Werz
- Institut für Organische Chemie, Technische Universität Braunschweig , Hagenring 30, D-38106 Braunschweig, Germany
| | - Frank Rominger
- Organisch-Chemisches Institut, Universität Heidelberg , Im Neuenheimer Feld 270, D-69120 Heidelberg, Germany
| | - Christian Bleiholder
- Department of Chemistry and Biochemistry & Institute of Molecular Biophysics, Florida State University , Tallahassee, Florida 32306-4390, United States
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16
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Lopes EF, Dalberto BT, Perin G, Alves D, Barcellos T, Lenardão EJ. Synthesis of Terminal Ethynyl Aryl Selenides and Sulfides Based on the Retro-Favorskii Reaction of Hydroxypropargyl Precursors. Chemistry 2017; 23:13760-13765. [PMID: 28763120 DOI: 10.1002/chem.201702493] [Citation(s) in RCA: 5] [Impact Index Per Article: 0.7] [Reference Citation Analysis] [Abstract] [Key Words] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Received: 05/31/2017] [Indexed: 11/12/2022]
Abstract
The retro-Favorskii reaction is an excellent way to achieve terminal alkynes. Methodologies that connect the synthesis of terminal alkynes and organochalcogen motifs are important for the construction of novel compounds. Fourteen new terminal alkynes containing either Csp -S or Csp -Se bonds were selectively prepared through the retro-Favorskii reaction from the respective carbinol precursors. It was discovered that terminal chalcogen alkynes were stable for weeks if stored as a solution in hexanes.
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Affiliation(s)
- Eric F Lopes
- Centro de Ciências Químicas, Farmacêuticas e de Alimentos, Universidade Federal de Pelotas-UFPel, P.O. Box 354, CEP, 96010-900, Pelotas, RS-, Brazil
| | - Bianca T Dalberto
- Centro de Ciências Químicas, Farmacêuticas e de Alimentos, Universidade Federal de Pelotas-UFPel, P.O. Box 354, CEP, 96010-900, Pelotas, RS-, Brazil
| | - Gelson Perin
- Centro de Ciências Químicas, Farmacêuticas e de Alimentos, Universidade Federal de Pelotas-UFPel, P.O. Box 354, CEP, 96010-900, Pelotas, RS-, Brazil
| | - Diego Alves
- Centro de Ciências Químicas, Farmacêuticas e de Alimentos, Universidade Federal de Pelotas-UFPel, P.O. Box 354, CEP, 96010-900, Pelotas, RS-, Brazil
| | - Thiago Barcellos
- Laboratory of Biotechnology of Natural and Synthetic Products, Universidade de Caxias do Sul-UCS, Caxias do Sul, RS, Brazil
| | - Eder J Lenardão
- Centro de Ciências Químicas, Farmacêuticas e de Alimentos, Universidade Federal de Pelotas-UFPel, P.O. Box 354, CEP, 96010-900, Pelotas, RS-, Brazil
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17
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Zhu YX, Zhao ZJ, Zhang Y, Su Q, Peng ZH, An DL. Synthesis of Bis(arylethynyl) Selenides by One-Pot Protocol. HETEROATOM CHEMISTRY 2014. [DOI: 10.1002/hc.21208] [Citation(s) in RCA: 4] [Impact Index Per Article: 0.4] [Reference Citation Analysis] [Track Full Text] [Subscribe] [Scholar Register] [Indexed: 11/06/2022]
Affiliation(s)
- Yun-Xing Zhu
- State Key Laboratory of Chemo/Biosensing and Chemometrics; College of Chemistry and Chemical Engineering, Hunan University; Changsha 410082 People's Republic of China
| | - Zi-Jian Zhao
- State Key Laboratory of Chemo/Biosensing and Chemometrics; College of Chemistry and Chemical Engineering, Hunan University; Changsha 410082 People's Republic of China
| | - Yang Zhang
- State Key Laboratory of Chemo/Biosensing and Chemometrics; College of Chemistry and Chemical Engineering, Hunan University; Changsha 410082 People's Republic of China
| | - Qiong Su
- State Key Laboratory of Chemo/Biosensing and Chemometrics; College of Chemistry and Chemical Engineering, Hunan University; Changsha 410082 People's Republic of China
| | - Zhi-Hong Peng
- State Key Laboratory of Chemo/Biosensing and Chemometrics; College of Chemistry and Chemical Engineering, Hunan University; Changsha 410082 People's Republic of China
| | - De-Lie An
- State Key Laboratory of Chemo/Biosensing and Chemometrics; College of Chemistry and Chemical Engineering, Hunan University; Changsha 410082 People's Republic of China
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Mohammadi E, Movassagh B. Cryptand-22 as an efficient ligand for the copper-catalyzed cross-coupling reaction of diorgano dichalcogenides with terminal alkynes leading to the synthesis of alkynyl chalcogenides. Tetrahedron Lett 2014. [DOI: 10.1016/j.tetlet.2014.01.088] [Citation(s) in RCA: 21] [Impact Index Per Article: 2.1] [Reference Citation Analysis] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Indexed: 11/28/2022]
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Parashiva Prabhu C, Phadnis PP, Wadawale A, Priyadarsini KI, Jain VK. One-pot synthesis of phenylseleno N-acetyl α-amino acids: Supra-molecular self-assembling in organoselenium compounds. J Organomet Chem 2013. [DOI: 10.1016/j.jorganchem.2013.07.057] [Citation(s) in RCA: 6] [Impact Index Per Article: 0.5] [Reference Citation Analysis] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Indexed: 11/26/2022]
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Panda S, Dutta PK, Ramakrishna G, Reddy CM, Zade SS. Azomethine diselenides: Supramolecular structures and facile formation of a bis-oxazoline diselenide. J Organomet Chem 2012. [DOI: 10.1016/j.jorganchem.2012.07.026] [Citation(s) in RCA: 6] [Impact Index Per Article: 0.5] [Reference Citation Analysis] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Indexed: 11/29/2022]
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Caldwell LM, Hill AF, Hulkes AG, McQueen CMA, White AJP, Williams DJ. Alkynyl Selenolate Complexes of Iron, Nickel, and Molybdenum. Organometallics 2010. [DOI: 10.1021/om100694f] [Citation(s) in RCA: 14] [Impact Index Per Article: 1.0] [Reference Citation Analysis] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Indexed: 11/30/2022]
Affiliation(s)
- Lorraine M. Caldwell
- Research School of Chemistry, Institute of Advanced Studies, Australian National University, Canberra, Australian Capital Territory, Australia
| | - Anthony F. Hill
- Research School of Chemistry, Institute of Advanced Studies, Australian National University, Canberra, Australian Capital Territory, Australia
| | - Alexander G. Hulkes
- Imperial College of Science, Technology and Medicine, London SW1W 9QU, United Kingdom
| | - Caitlin M. A. McQueen
- Research School of Chemistry, Institute of Advanced Studies, Australian National University, Canberra, Australian Capital Territory, Australia
| | - Andrew J. P. White
- Imperial College of Science, Technology and Medicine, London SW1W 9QU, United Kingdom
| | - David J. Williams
- Imperial College of Science, Technology and Medicine, London SW1W 9QU, United Kingdom
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Gleiter R, Werz DB. Alkynes Between Main Group Elements: From Dumbbells via Rods to Squares and Tubes. Chem Rev 2010; 110:4447-88. [DOI: 10.1021/cr9003727] [Citation(s) in RCA: 71] [Impact Index Per Article: 5.1] [Reference Citation Analysis] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Indexed: 11/30/2022]
Affiliation(s)
- Rolf Gleiter
- Organisch-Chemisches Institut der Universität Heidelberg, Im Neuenheimer Feld 270, D-69120 Heidelberg, Germany, and Institut für Organische und Biomolekulare Chemie der Georg-August-Universität Göttingen, Tammannstr. 2, D-37077 Göttingen, Germany
| | - Daniel B. Werz
- Organisch-Chemisches Institut der Universität Heidelberg, Im Neuenheimer Feld 270, D-69120 Heidelberg, Germany, and Institut für Organische und Biomolekulare Chemie der Georg-August-Universität Göttingen, Tammannstr. 2, D-37077 Göttingen, Germany
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Lari A, Bleiholder C, Rominger F, Gleiter R. Intramolecular Nonbonded Interactions Between Divalent Selenium Centers with Donor and Acceptor Substituents. European J Org Chem 2009. [DOI: 10.1002/ejoc.200900108] [Citation(s) in RCA: 13] [Impact Index Per Article: 0.9] [Reference Citation Analysis] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Indexed: 11/09/2022]
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Lari A, Gleiter R, Rominger F. Supramolecular Organization Based on van der Waals Forces: Syntheses and Solid State Structures of Isomeric [6.6]Cyclophanes with 2,5-Diselenahex-3-yne Bridges. European J Org Chem 2009. [DOI: 10.1002/ejoc.200900106] [Citation(s) in RCA: 25] [Impact Index Per Article: 1.7] [Reference Citation Analysis] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Indexed: 11/10/2022]
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Werz DB, Fischer FR, Kornmayer SC, Rominger F, Gleiter R. Macrocyclic Cyclophanes with Two and Three α,ω-Dichalcogena-1,4-diethynylaryl Units: Syntheses and Structural Properties. J Org Chem 2008; 73:8021-9. [DOI: 10.1021/jo801378p] [Citation(s) in RCA: 32] [Impact Index Per Article: 2.0] [Reference Citation Analysis] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Indexed: 11/30/2022]
Affiliation(s)
- Daniel B. Werz
- Organisch-Chemisches Institut der Universität Heidelberg, Im Neuenheimer Feld 270, D-69120 Heidelberg, Germany
| | - Felix R. Fischer
- Organisch-Chemisches Institut der Universität Heidelberg, Im Neuenheimer Feld 270, D-69120 Heidelberg, Germany
| | - Stefan C. Kornmayer
- Organisch-Chemisches Institut der Universität Heidelberg, Im Neuenheimer Feld 270, D-69120 Heidelberg, Germany
| | - Frank Rominger
- Organisch-Chemisches Institut der Universität Heidelberg, Im Neuenheimer Feld 270, D-69120 Heidelberg, Germany
| | - Rolf Gleiter
- Organisch-Chemisches Institut der Universität Heidelberg, Im Neuenheimer Feld 270, D-69120 Heidelberg, Germany
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Sato R, Hamasaka G, Yamamoto T, Muraoka H, Nakajo S, Ogawa S. Macrocyclic Compounds Having Sulfide Moieties Derived fromo-Terphenyl. BULLETIN OF THE CHEMICAL SOCIETY OF JAPAN 2007. [DOI: 10.1246/bcsj.80.768] [Citation(s) in RCA: 5] [Impact Index Per Article: 0.3] [Reference Citation Analysis] [Track Full Text] [Subscribe] [Scholar Register] [Indexed: 11/13/2022]
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Maraval V, Chauvin R. From Macrocyclic Oligo-acetylenes to Aromatic Ring Carbo-mers. Chem Rev 2006; 106:5317-43. [PMID: 17165690 DOI: 10.1021/cr050964e] [Citation(s) in RCA: 97] [Impact Index Per Article: 5.4] [Reference Citation Analysis] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Indexed: 11/29/2022]
Affiliation(s)
- Valerie Maraval
- Laboratoire de Chimie de Coordination du CNRS, UPR 8241, 205 Route de Narbonne 31077, Toulouse Cedex 4, France
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Mundt O, Becker G, Baumgarten J, Riffel H, Simon A. Element-Element-Bindungen. XI Kettenbildung bei kristallinen Dimethyldichalkogenanen. Z Anorg Allg Chem 2006. [DOI: 10.1002/zaac.200600014] [Citation(s) in RCA: 28] [Impact Index Per Article: 1.6] [Reference Citation Analysis] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Indexed: 11/07/2022]
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Vujasinović I, Veljković J, Mlinarić-Majerski K, Molčanov K, Kojić-Prodić B. Solid-state tubular assemblies of thiolactones: synthesis and structural characterization. Tetrahedron 2006. [DOI: 10.1016/j.tet.2006.01.016] [Citation(s) in RCA: 7] [Impact Index Per Article: 0.4] [Reference Citation Analysis] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Indexed: 10/25/2022]
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Cozzolino AF, Vargas-Baca I, Mansour S, Mahmoudkhani AH. The nature of the supramolecular association of 1,2,5-chalcogenadiazoles. J Am Chem Soc 2005; 127:3184-90. [PMID: 15740158 DOI: 10.1021/ja044005y] [Citation(s) in RCA: 234] [Impact Index Per Article: 12.3] [Reference Citation Analysis] [Abstract] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Indexed: 11/28/2022]
Abstract
Organochalcogen-nitrogen heterocycles such as the 1,2,5-chalcogenadiazoles have a distinct tendency to establish intermolecular links in the solid state through secondary bonding interactions E...N (E = S, Se, Te). The association of these molecules was examined in detail using relativistic density functional theory. Although there is an important electrostatic component, the interaction between these molecules is dominated by contributions arising from orbital mixing, which can be interpreted as the donation of a nitrogen lone pair into the chalcogen-centered antibonding orbitals. Because of its more polar character and lower-lying antibonding orbitals, the tellurium derivatives possess the strongest association energies; these are so large that the binding strength is comparable to that of some hydrogen bonds. In the absence of steric constraints, telluradiazoles associate in a coplanar fashion forming ribbon polymers. However, bulky susbstituents could be used to direct the formation of either helical chains or discrete dimers. In addition to its strength, the coplanar dimer is characterized by being rigid, yet no activation barrier is expected for the association/dissociation process. These attributes strongly indicate that tellurium-nitrogen heterocycles have great potential as building blocks in supramolecular architecture.
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Affiliation(s)
- Anthony F Cozzolino
- Department of Chemistry, McMaster University, 1280 Main Street West, Hamilton, Ontario L8S 4M1
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Liu Y, Han JR, Zhao YL, Zhang HY, Duan ZY. Synthesis of Some Selenacrown Ethers and the Thermodynamic Origin of Their Complexation with C60. ACTA ACUST UNITED AC 2005. [DOI: 10.1007/s10847-005-0662-6] [Citation(s) in RCA: 10] [Impact Index Per Article: 0.5] [Reference Citation Analysis] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Indexed: 11/30/2022]
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Gleiter R, Werz DB. Elastic Cycles as Flexible Hosts: How Tubes Built by Cyclic Chalcogenaalkynes Individually Host Their Guests. CHEM LETT 2005. [DOI: 10.1246/cl.2005.126] [Citation(s) in RCA: 26] [Impact Index Per Article: 1.4] [Reference Citation Analysis] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Indexed: 11/12/2022]
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Werz D, Gleiter R, Rominger F. Mono(alkyne)cobalt Complexes and Electron‐Rich Alkynes − The Formation of an Alkyne‐Bridged Dinuclear Cobalt Complex by a One‐Pot Procedure. Eur J Inorg Chem 2004. [DOI: 10.1002/ejic.200400339] [Citation(s) in RCA: 7] [Impact Index Per Article: 0.4] [Reference Citation Analysis] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Indexed: 11/08/2022]
Affiliation(s)
- Daniel B. Werz
- Organisch‐Chemisches Institut der Universität Heidelberg, Im Neuenheimer Feld 270, 69120 Heidelberg, Germany, Fax: (internat.) + 49‐6221‐544205
| | - Rolf Gleiter
- Organisch‐Chemisches Institut der Universität Heidelberg, Im Neuenheimer Feld 270, 69120 Heidelberg, Germany, Fax: (internat.) + 49‐6221‐544205
| | - Frank Rominger
- Organisch‐Chemisches Institut der Universität Heidelberg, Im Neuenheimer Feld 270, 69120 Heidelberg, Germany, Fax: (internat.) + 49‐6221‐544205
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34
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Werz DB, Schulte JH, Gleiter R, Rominger F. Donor-substituted CpCo-stabilized cyclobutadienes and superphanes. J Organomet Chem 2004. [DOI: 10.1016/j.jorganchem.2004.06.048] [Citation(s) in RCA: 12] [Impact Index Per Article: 0.6] [Reference Citation Analysis] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Indexed: 10/26/2022]
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35
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Werz D, Schulte J, Rausch B, Gleiter R, Rominger F. Structural Properties of Bis(hexacarbonyldicobalt) Complexes with Heteroatoms Next to the Former Triple Bonds − A Contribution to the Mechanism of the Pauson−Khand Reaction. Eur J Inorg Chem 2004. [DOI: 10.1002/ejic.200300862] [Citation(s) in RCA: 11] [Impact Index Per Article: 0.6] [Reference Citation Analysis] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Indexed: 11/09/2022]
Affiliation(s)
- Daniel B. Werz
- Organisch‐Chemisches Institut der Universität Heidelberg, Im Neuenheimer Feld 270, 69120 Heidelberg, Germany
| | - J. Hilko Schulte
- Organisch‐Chemisches Institut der Universität Heidelberg, Im Neuenheimer Feld 270, 69120 Heidelberg, Germany
| | - Bernhard J. Rausch
- Organisch‐Chemisches Institut der Universität Heidelberg, Im Neuenheimer Feld 270, 69120 Heidelberg, Germany
| | - Rolf Gleiter
- Organisch‐Chemisches Institut der Universität Heidelberg, Im Neuenheimer Feld 270, 69120 Heidelberg, Germany
| | - Frank Rominger
- Organisch‐Chemisches Institut der Universität Heidelberg, Im Neuenheimer Feld 270, 69120 Heidelberg, Germany
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