1
|
Development of metallosupramolecular phosphatases based on the combinatorial self-assembly of metal complexes and organic building blocks for the catalytic hydrolysis of phosphate monoesters. RESULTS IN CHEMISTRY 2021. [DOI: 10.1016/j.rechem.2021.100133] [Citation(s) in RCA: 2] [Impact Index Per Article: 0.7] [Reference Citation Analysis] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Indexed: 11/22/2022] Open
|
2
|
Hartman T, Cibulka R. Photocatalytic Systems with Flavinium Salts: From Photolyase Models to Synthetic Tool for Cyclobutane Ring Opening. Org Lett 2016; 18:3710-3. [DOI: 10.1021/acs.orglett.6b01743] [Citation(s) in RCA: 30] [Impact Index Per Article: 3.8] [Reference Citation Analysis] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Indexed: 11/28/2022]
Affiliation(s)
- Tomáš Hartman
- Department of Organic Chemistry, University of Chemistry and Technology, Prague, Technická 5, 166 28 Prague, Czech Republic
| | - Radek Cibulka
- Department of Organic Chemistry, University of Chemistry and Technology, Prague, Technická 5, 166 28 Prague, Czech Republic
| |
Collapse
|
3
|
Hisamatsu Y, Miyazawa Y, Yoneda K, Miyauchi M, Zulkefeli M, Aoki S. Supramolecular Complexes Formed by the Self-assembly of Hydrophobic Bis(Zn 2+-cyclen) Complexes, Copper, and Di- or Triimide Units for the Hydrolysis of Phosphate Mono- and Diesters in Two-Phase Solvent Systems (Cyclen=1,4,7,10-Tetraazacyclododecane). Chem Pharm Bull (Tokyo) 2016; 64:451-64. [DOI: 10.1248/cpb.c15-01014] [Citation(s) in RCA: 10] [Impact Index Per Article: 1.3] [Reference Citation Analysis] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Indexed: 11/22/2022]
Affiliation(s)
| | - Yuya Miyazawa
- Faculty of Pharmaceutical Sciences, Tokyo University of Science
| | - Kakeru Yoneda
- Faculty of Pharmaceutical Sciences, Tokyo University of Science
| | - Miki Miyauchi
- Faculty of Pharmaceutical Sciences, Tokyo University of Science
| | | | - Shin Aoki
- Faculty of Pharmaceutical Sciences, Tokyo University of Science
| |
Collapse
|
4
|
Lönnberg T, Hutchinson M, Rokita S. Selective Alkylation of C-Rich Bulge Motifs in Nucleic Acids by Quinone Methide Derivatives. Chemistry 2015. [PMID: 26220692 DOI: 10.1002/chem.201502014] [Citation(s) in RCA: 11] [Impact Index Per Article: 1.2] [Reference Citation Analysis] [Abstract] [Key Words] [Journal Information] [Subscribe] [Scholar Register] [Indexed: 11/07/2022]
Abstract
A quinone methide precursor featuring a bis-cyclen anchoring moiety has been synthesized and its capacity to alkylate oligonucleotide targets quantified in the presence and absence of divalent metal ions (Zn(2+) , Ni(2+) and Cd(2+) ). The oligonucleotides were designed for testing the sequence and secondary structure specificity of the reaction. Gel electrophoretic analysis revealed predominant alkylation of C-rich bulges, regardless of the presence of divalent metal ions or even the bis-cyclen anchor. This C-selectivity appears to be an intrinsic property of the quinone methide electrophile as reflected by its reaction with an equimolar mixture of the 2'-deoxynucleosides. Only dA-N1 and dC-N3 alkylation products were detected initially and only the dC adduct persisted for detection under conditions of the gel electrophoretic analysis.
Collapse
Affiliation(s)
- Tuomas Lönnberg
- Department of Chemistry, Johns Hopkins University, Baltimore, Maryland 21218 (USA). .,Department of Chemistry, University of Turku, 20014 Turku (Finland).
| | - Mark Hutchinson
- Department of Chemistry, Johns Hopkins University, Baltimore, Maryland 21218 (USA)
| | - Steven Rokita
- Department of Chemistry, Johns Hopkins University, Baltimore, Maryland 21218 (USA)
| |
Collapse
|
5
|
Bibal B, Mongin C, Bassani DM. Template effects and supramolecular control of photoreactions in solution. Chem Soc Rev 2014; 43:4179-98. [DOI: 10.1039/c3cs60366k] [Citation(s) in RCA: 86] [Impact Index Per Article: 8.6] [Reference Citation Analysis] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Indexed: 12/22/2022]
|
6
|
|
7
|
Nguyen KV, Burrows CJ. Photorepair of cyclobutane pyrimidine dimers by 8-oxopurine nucleosides. J PHYS ORG CHEM 2012. [DOI: 10.1002/poc.2919] [Citation(s) in RCA: 14] [Impact Index Per Article: 1.2] [Reference Citation Analysis] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Indexed: 12/15/2022]
Affiliation(s)
- Khiem Van Nguyen
- Department of Chemistry; University of Utah; 315 S. 1400 East; Salt Lake City; UT; 84112-0850; USA
| | - Cynthia J. Burrows
- Department of Chemistry; University of Utah; 315 S. 1400 East; Salt Lake City; UT; 84112-0850; USA
| |
Collapse
|
8
|
Zulkefeli M, Suzuki A, Shiro M, Hisamatsu Y, Kimura E, Aoki S. Selective Hydrolysis of Phosphate Monoester by a Supramolecular Phosphatase Formed by the Self-Assembly of a Bis(Zn2+-cyclen) Complex, Cyanuric Acid, and Copper in an Aqueous Solution (Cyclen = 1,4,7,10-Tetraazacyclododecane). Inorg Chem 2011; 50:10113-23. [DOI: 10.1021/ic201072q] [Citation(s) in RCA: 30] [Impact Index Per Article: 2.3] [Reference Citation Analysis] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Indexed: 11/30/2022]
Affiliation(s)
- Mohd Zulkefeli
- Faculty of Pharmacy, Universiti Teknologi MARA, Puncak Alam, Selangor 42300, Malaysia
| | | | - Motoo Shiro
- X-ray Research Laboratory, Rigaku Corporation, 3-9-12 Matsubaracho, Akishima, Tokyo 196-8666, Japan
| | | | - Eiichi Kimura
- Faculty of Science, Shizuoka University, 836 Ohya, Suruga-ku, Shizuoka 422-8529, Japan
| | | |
Collapse
|
9
|
Stafforst T, Hilvert D. Photolyase-artige Reparatur Psoralen-quervernetzter Nucleinsäuren. Angew Chem Int Ed Engl 2011. [DOI: 10.1002/ange.201103611] [Citation(s) in RCA: 5] [Impact Index Per Article: 0.4] [Reference Citation Analysis] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Indexed: 11/08/2022]
|
10
|
Stafforst T, Hilvert D. Photolyase-like repair of psoralen-crosslinked nucleic acids. Angew Chem Int Ed Engl 2011; 50:9483-6. [PMID: 21948450 DOI: 10.1002/anie.201103611] [Citation(s) in RCA: 10] [Impact Index Per Article: 0.8] [Reference Citation Analysis] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Received: 05/26/2011] [Indexed: 11/08/2022]
|
11
|
|
12
|
Schmaderer H, Bhuyan M, König B. Synthesis of rigidified flavin-guanidinium ion conjugates and investigation of their photocatalytic properties. Beilstein J Org Chem 2009; 5:26. [PMID: 19590745 PMCID: PMC2707025 DOI: 10.3762/bjoc.5.26] [Citation(s) in RCA: 5] [Impact Index Per Article: 0.3] [Reference Citation Analysis] [Abstract] [Key Words] [Track Full Text] [Download PDF] [Figures] [Journal Information] [Subscribe] [Scholar Register] [Received: 02/27/2009] [Accepted: 05/07/2009] [Indexed: 11/23/2022] Open
Abstract
Flavin chromophores can mediate redox reactions upon irradiation by blue light. In an attempt to increase their catalytic efficacy, flavin derivatives bearing a guanidinium ion as oxoanion binding site were prepared. Chromophore and substrate binding site are linked by a rigid Kemp's acid structure. The molecular structure of the new flavins was confirmed by an X-ray structure analysis and their photocatalytic activity was investigated in benzyl ester cleavage, nitroarene reduction and a Diels-Alder reaction. The modified flavins photocatalyze the reactions, but the introduced substrate binding site does not enhance their performance.
Collapse
Affiliation(s)
- Harald Schmaderer
- Institute of Organic Chemisty, University of Regensburg, Universitätsstr. 31, D-93040 Regensburg, Germany
| | - Mouchumi Bhuyan
- Institute of Organic Chemisty, University of Regensburg, Universitätsstr. 31, D-93040 Regensburg, Germany
| | - Burkhard König
- Institute of Organic Chemisty, University of Regensburg, Universitätsstr. 31, D-93040 Regensburg, Germany
| |
Collapse
|
13
|
Svoboda J, Schmaderer H, König B. Thiourea-Enhanced Flavin Photooxidation of Benzyl Alcohol. Chemistry 2008; 14:1854-65. [DOI: 10.1002/chem.200701319] [Citation(s) in RCA: 71] [Impact Index Per Article: 4.4] [Reference Citation Analysis] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Indexed: 11/08/2022]
|
14
|
Yoshimura Y, Taya Y, Matsumura H, Fujimoto K. Photosensitized Cleavage of the Thymine Dimer in DNA via Carbazole Nucleoside. J PHOTOPOLYM SCI TEC 2008. [DOI: 10.2494/photopolymer.21.525] [Citation(s) in RCA: 0] [Impact Index Per Article: 0] [Reference Citation Analysis] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Indexed: 11/09/2022]
|
15
|
Song QH, Tang WJ, Ji XB, Wang HB, Guo QX. Do photolyases need to provide considerable activation energy for the splitting of cyclobutane pyrimidine dimer radical anions? Chemistry 2007; 13:7762-70. [PMID: 17568458 DOI: 10.1002/chem.200700251] [Citation(s) in RCA: 17] [Impact Index Per Article: 1.0] [Reference Citation Analysis] [Abstract] [MESH Headings] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Indexed: 11/11/2022]
Abstract
cis-syn Cyclobutane pyrimidine dimers, major UV-induced DNA lesions, are efficiently repaired by DNA photolyases. The key step of the repair reaction is a light-driven electron transfer from the FADH(-) cofactor to the dimer; the resulting radical anion splits spontaneously. Whether the splitting reaction requires considerable activation energy is still under dispute. Recent reports show that the splitting reaction of a dimer radical anion has a significant activation barrier (0.45 eV), and so photolyases have to provide considerable energy. However, these results contradict observations that cis-syn dimer radical anions split into monomers at -196 degrees C, and that the full process of DNA photoreactivation was fast (1.5-2 ns). To investigate the activation energies of dimer radical anions, three model compounds 1-3 were prepared. These include a covalently linked cyclobutane thymine dimer and a tryptophan residue (1) or a flavin unit (3), and the covalently linked uracil dimer and tryptophan (2). Their properties of photosensitised splitting of the dimer units by tryptophan or flavin unit were investigated over a large temperature range, -196 to 70 degrees C. The activation energies were obtained from the temperature dependency of splitting reactions for 1 and 2, 1.9 kJ mol(-1) and 0.9 kJ mol(-1) for the thymine and uracil dimer radical anions, respectively. These values are much lower than that obtained for E. coli photolyase (0.45 eV), and are surmountable at -196 degrees C. The activation energies provide support for previous observations that repair efficiencies for uracil dimers are higher than thymine dimers, both in enzymatic and model systems. The mechanisms of highly efficient enzymatic DNA repair are discussed.
Collapse
Affiliation(s)
- Qin-Hua Song
- Department of Chemistry, University of Science and Technology of China, Hefei 230026, Anhui, P. R. China.
| | | | | | | | | |
Collapse
|
16
|
Krivickas SJ, Tamanini E, Todd MH, Watkinson M. Effective Methods for the Biotinylation of Azamacrocycles. J Org Chem 2007; 72:8280-9. [PMID: 17902693 DOI: 10.1021/jo071175v] [Citation(s) in RCA: 23] [Impact Index Per Article: 1.4] [Reference Citation Analysis] [Abstract] [MESH Headings] [Grants] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Indexed: 11/29/2022]
Abstract
The biotin-(strept)avidin interaction remains a gold standard of model biological recognition events. The biotinylation of azamacrocycles permits the investigation of signal transduction between this recognition event and the metal center of an azamacrocycle complex, of wide potential interest in biosensing. There are no generally applicable procedures in the literature for such functionalizations. We report here a comprehensive investigation into the attachment of biotin to TACN, cyclen, and cyclam. Effective methods have been found for each ring. The efficacy of the functionalization is critically dependent on the nature of the azamacrocycle.
Collapse
Affiliation(s)
- Sara J Krivickas
- School of Biological and Chemical Sciences, Queen Mary, University of London, Mile End Road, London, E1 4NS, United Kingdom
| | | | | | | |
Collapse
|
17
|
|
18
|
Svoboda J, König B. Templated photochemistry: toward catalysts enhancing the efficiency and selectivity of photoreactions in homogeneous solutions. Chem Rev 2007; 106:5413-30. [PMID: 17165693 DOI: 10.1021/cr050568w] [Citation(s) in RCA: 119] [Impact Index Per Article: 7.0] [Reference Citation Analysis] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Indexed: 11/28/2022]
Affiliation(s)
- Jirí Svoboda
- Institut für Organische Chemie, Universität Regensburg, Universitätsstrasse 31, 93053 Regensburg, Germany
| | | |
Collapse
|
19
|
Yamada Y, Aoki S. Efficient cycloreversion of cis,syn-thymine photodimer by a Zn2+–1,4,7,10-tetraazacyclododecane complex bearing a lumiflavin and tryptophan by chemical reduction and photoreduction of a lumiflavin unit. J Biol Inorg Chem 2006; 11:1007-23. [PMID: 16944231 DOI: 10.1007/s00775-006-0152-3] [Citation(s) in RCA: 15] [Impact Index Per Article: 0.8] [Reference Citation Analysis] [Abstract] [MESH Headings] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Received: 04/23/2006] [Accepted: 07/21/2006] [Indexed: 11/29/2022]
Abstract
DNA photolyases (EC 4.1.99.3) are enzymes that catalyze photoreversion of cis,syn-thymine photodimer (T[c,s]T), which is one of major photolesion products in DNA, by utilizing UV light. In this work, we have designed and synthesized Zn2+ -1,4,7,10-tetraazacyclododecane complexes bearing a lumiflavin and L: -tryptophan (ZnL3) or L: -phenylalanine (ZnL4) as artificial DNA photolyases. We have found that (ZnL3)red, whose flavin unit was reduced in situ by Na2S2O4, accelerates the photoreversion of T[c,s]T utilizing near-UV light in aqueous solution at pH 7.6 and 11. Interestingly, more efficient photoreversion of T[c,s]T was achieved by UV irradiation of an oxidized form of ZnL3 [(ZnL3)ox] in the presence of an excess amount of Et3N at pH 11. UV-vis and fluorescence measurements and action spectra showed that an oxidized form of flavin of (ZnL3)ox was photoreduced by Et3N into its reduced form (ZnL3)red, which promoted the photoreduction of T[c,s]T. Comparison of the photochemical properties of ZnL3 with those of ZnL4 suggested that a tryptophan unit in ZnL3 contributed to the stabilities of the flavin through intramolecular photoinduced electron transfer.
Collapse
Affiliation(s)
- Yasuyuki Yamada
- Faculty of Pharmaceutical Sciences, Tokyo University of Science, 2641 Yamazaki, Noda, 278-8510, Japan
| | | |
Collapse
|
20
|
Tang WJ, Song QH, Wang HB, Yu JY, Guo QX. Efficient photosensitized splitting of the thymine dimer/oxetane unit on its modifying beta-cyclodextrin by a binding electron donor. Org Biomol Chem 2006; 4:2575-80. [PMID: 16791321 DOI: 10.1039/b604529d] [Citation(s) in RCA: 15] [Impact Index Per Article: 0.8] [Reference Citation Analysis] [Abstract] [MESH Headings] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Indexed: 11/21/2022]
Abstract
Two modified beta-cyclodextrins (beta-CDs) with a thymine dimer and a thymine oxetane adduct respectively, TD-CD and Ox-CD, have been prepared, and utilized to bind an electron-rich chromophore, indole or N,N-dimethylaniline (DMA), to form a supramolecular complex. We have examined the photosensitized splitting of the dimer/oxetane unit in TD-CD/Ox-CD by indole or DMA via an electron-transfer pathway, and observed high splitting efficiencies of the dimer/oxetane unit. On the basis of measurements of fluorescence spectra and splitting quantum yields, it is suggested that the splitting reaction occurs in a supramolecular complex by an inclusion interaction between the modified beta-CDs and DMA or indole. The back electron transfer, which leads low splitting efficiencies for the covalently-linked chromophore-dimer/oxetane compounds, is suppressed in the non-covalently-bound complex, and the mechanism has been discussed.
Collapse
Affiliation(s)
- Wen-Jian Tang
- Department of Chemistry, University of Science and Technology of China, and State Key Laboratory of Elemento-Organic Chemistry, Nankai University, Hefei, Anhui.
| | | | | | | | | |
Collapse
|
21
|
Yoshimura Y, Fujimoto K. Catalytic Repair of a Thymine Dimer in DNA via Carbazole Nucleoside. CHEM LETT 2006. [DOI: 10.1246/cl.2006.386] [Citation(s) in RCA: 6] [Impact Index Per Article: 0.3] [Reference Citation Analysis] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Indexed: 01/19/2023]
|