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Tapera M, Borghi F, Mayer-Figge JL, Mittendorf F, Celik IE, Gómez-Suárez A, Kirsch SF. A Formal Synthesis of (+)-Hannokinol Using a Chiral Horner-Wittig Reagent. Molecules 2024; 29:3710. [PMID: 39125113 PMCID: PMC11313872 DOI: 10.3390/molecules29153710] [Citation(s) in RCA: 0] [Impact Index Per Article: 0] [Reference Citation Analysis] [Abstract] [Key Words] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Received: 06/26/2024] [Revised: 07/26/2024] [Accepted: 07/26/2024] [Indexed: 08/12/2024] Open
Abstract
Herein, we report a concise and efficient formal synthesis of (+)-hannokinol. Key to this new strategy is the use of a chiral Horner-Wittig reagent, readily available from 2-deoxy-D-ribose, to introduce the chiral 1,3-diol motif.
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Affiliation(s)
| | | | | | | | | | | | - Stefan F. Kirsch
- Organic Chemistry, Bergische Universität Wuppertal, Gaußstr. 20, 42119 Wuppertal, Germany
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2
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Petracco E, Flourat AL, Belhomme MC, Castex S, Brunissen F, Brunois F, Peru AAM, Allais F, Haudrechy A. Green synthesis of ( R)-3-hydroxy-decanoic acid and analogs from levoglucosenone: a novel access to the fatty acid moiety of rhamnolipids. Front Chem 2024; 12:1362878. [PMID: 38708030 PMCID: PMC11066284 DOI: 10.3389/fchem.2024.1362878] [Citation(s) in RCA: 0] [Impact Index Per Article: 0] [Reference Citation Analysis] [Abstract] [Key Words] [Track Full Text] [Figures] [Journal Information] [Subscribe] [Scholar Register] [Received: 12/29/2023] [Accepted: 03/11/2024] [Indexed: 05/07/2024] Open
Abstract
Rhamnolipids (RLs) are highly valuable molecules in the cosmetic, pharmaceutic, and agricultural sectors with outstanding biosurfactant properties. In agriculture, due to their potential to artificially stimulate the natural immune system of crops (also known as elicitation), they could represent a critical substitute to conventional pesticides. However, their current synthesis methods are complex and not aligned with green chemistry principles, posing a challenge for their industrial applications. In addition, their bioproduction is cumbersome with reproducibility issues and expensive downstream processing. This work offers a more straightforward and green access to RLs, crucial to decipher their mechanisms of action and design novel potent and eco-friendly elicitors. To achieve this, we propose an efficient seven-step synthetic pathway toward (R)-3-hydroxyfatty acid chains present in RLs, starting from cellulose-derived levoglucosenone, with Michael addition, Baeyer-Villiger oxidation, Bernet-Vasella reaction, and cross-metathesis homologation as key steps. This method allowed the production of (R)-3-hydroxyfatty acid chains and derivatives with an overall yield ranging from 24% to 36%.
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Affiliation(s)
- Enzo Petracco
- Institut de Chimie Moléculaire de Reims, UMR 7312, SFR Condorcet FR CNRS 3417, Université de Reims Champagne Ardenne, Reims, France
- URD Agro-Biotechnologies Industrielles (ABI), CEBB, AgroParisTech, Pomacle, France
| | - Amandine L. Flourat
- Institut de Chimie Moléculaire de Reims, UMR 7312, SFR Condorcet FR CNRS 3417, Université de Reims Champagne Ardenne, Reims, France
- URD Agro-Biotechnologies Industrielles (ABI), CEBB, AgroParisTech, Pomacle, France
| | - Marie-Charlotte Belhomme
- Institut de Chimie Moléculaire de Reims, UMR 7312, SFR Condorcet FR CNRS 3417, Université de Reims Champagne Ardenne, Reims, France
| | - Stéphanie Castex
- Institut de Chimie Moléculaire de Reims, UMR 7312, SFR Condorcet FR CNRS 3417, Université de Reims Champagne Ardenne, Reims, France
| | - Fanny Brunissen
- URD Agro-Biotechnologies Industrielles (ABI), CEBB, AgroParisTech, Pomacle, France
| | - Fanny Brunois
- URD Agro-Biotechnologies Industrielles (ABI), CEBB, AgroParisTech, Pomacle, France
| | - Aurélien A. M. Peru
- URD Agro-Biotechnologies Industrielles (ABI), CEBB, AgroParisTech, Pomacle, France
| | - Florent Allais
- URD Agro-Biotechnologies Industrielles (ABI), CEBB, AgroParisTech, Pomacle, France
| | - Arnaud Haudrechy
- Institut de Chimie Moléculaire de Reims, UMR 7312, SFR Condorcet FR CNRS 3417, Université de Reims Champagne Ardenne, Reims, France
- URD Agro-Biotechnologies Industrielles (ABI), CEBB, AgroParisTech, Pomacle, France
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3
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Petrocchi A, Grillo A, Ferrante L, Randazzo P, Prandi A, De Matteo M, Iaccarino C, Bisbocci M, Cellucci A, Alli C, Nibbio M, Pucci V, Amaudrut J, Montalbetti C, Toniatti C, Di Fabio R. Discovery of a Novel Series of Potent SHP2 Allosteric Inhibitors. ACS Med Chem Lett 2023; 14:645-651. [PMID: 37197453 PMCID: PMC10184159 DOI: 10.1021/acsmedchemlett.3c00059] [Citation(s) in RCA: 1] [Impact Index Per Article: 1.0] [Reference Citation Analysis] [Abstract] [Key Words] [Grants] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Received: 02/21/2023] [Accepted: 04/10/2023] [Indexed: 05/19/2023] Open
Abstract
Src homology 2-containing protein tyrosine phosphatase 2 (SHP2) is the first reported nonreceptor oncogenic tyrosine phosphatase connecting multiple signal transduction cascades and exerting immunoinhibitory function through the PD-1 checkpoint receptor. As part of a drug discovery program aimed at obtaining novel allosteric SHP2 inhibitors, a series of pyrazopyrazine derivatives bearing an original bicyclo[3.1.0]hexane basic moiety on the left-hand side region of the molecule were identified. We report herein the discovery process, the in vitro pharmacological profile, and the early developability features of compound 25, one of the most potent members of the series.
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Affiliation(s)
| | | | | | | | | | | | | | | | | | - Cristina Alli
- IRBM
S.p.A, Via Pontina Km 30.600, 00070 Pomezia, Italy
| | | | | | | | | | | | - Romano Di Fabio
- IRBM
S.p.A, Via Pontina Km 30.600, 00070 Pomezia, Italy
- Promidis, Via Olgettina 60, 20132 Milano, Italy
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4
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Mittendorf F, Celik IE, Kirsch SF. Total Synthesis of Cryptoconcatone D via Construction of 1,3-Diol Units Using Chiral Horner-Wittig Reagents. J Org Chem 2022; 87:14899-14908. [PMID: 36195315 DOI: 10.1021/acs.joc.2c01737] [Citation(s) in RCA: 0] [Impact Index Per Article: 0] [Reference Citation Analysis] [Abstract] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Indexed: 01/07/2023]
Abstract
The modular synthesis of 1,3-polyols using a chiral phosphine oxide building block is reported. This versatile building block works in a repetitive way for the stereocontrolled synthesis of a tetraol key intermediate, which serves for the first total synthesis of the potentially anti-inflammatory natural product cryptoconcatone D. A new route toward the chiral building block is also presented: Starting from 2-deoxy-d-ribose, the optimized sequence now makes the use of the building block more attractive to practicing chemists again.
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Affiliation(s)
- Fabia Mittendorf
- Organic Chemistry, Bergische Universität Wuppertal, Gaußstr. 20, 42119 Wuppertal, Germany
| | - Ibrahim-Ethem Celik
- Organic Chemistry, Bergische Universität Wuppertal, Gaußstr. 20, 42119 Wuppertal, Germany
| | - Stefan F Kirsch
- Organic Chemistry, Bergische Universität Wuppertal, Gaußstr. 20, 42119 Wuppertal, Germany
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5
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Azide-free synthesis of Boc-protected (3R,4S)-3,4-dihydroxypiperidine. Tetrahedron Lett 2022. [DOI: 10.1016/j.tetlet.2022.153789] [Citation(s) in RCA: 0] [Impact Index Per Article: 0] [Reference Citation Analysis] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Indexed: 11/18/2022]
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6
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Stereodivergent synthesis of piperidine iminosugars 1-deoxy-D-nojirimycin and 1-deoxy-D-altronojirimycin. Tetrahedron 2021. [DOI: 10.1016/j.tet.2020.131837] [Citation(s) in RCA: 1] [Impact Index Per Article: 0.3] [Reference Citation Analysis] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Indexed: 11/21/2022]
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Ruchala J, Sibirny AA. Pentose metabolism and conversion to biofuels and high-value chemicals in yeasts. FEMS Microbiol Rev 2020; 45:6034013. [PMID: 33316044 DOI: 10.1093/femsre/fuaa069] [Citation(s) in RCA: 9] [Impact Index Per Article: 2.3] [Reference Citation Analysis] [Abstract] [Key Words] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Received: 07/20/2020] [Accepted: 12/09/2020] [Indexed: 12/15/2022] Open
Abstract
Pentose sugars are widespread in nature and two of them, D-xylose and L-arabinose belong to the most abundant sugars being the second and third by abundance sugars in dry plant biomass (lignocellulose) and in general on planet. Therefore, it is not surprising that metabolism and bioconversion of these pentoses attract much attention. Several different pathways of D-xylose and L-arabinose catabolism in bacteria and yeasts are known. There are even more common and really ubiquitous though not so abundant pentoses, D-ribose and 2-deoxy-D-ribose, the constituents of all living cells. Thus, ribose metabolism is example of endogenous metabolism whereas metabolism of other pentoses, including xylose and L-arabinose, represents examples of the metabolism of foreign exogenous compounds which normally are not constituents of yeast cells. As a rule, pentose degradation by the wild-type strains of microorganisms does not lead to accumulation of high amounts of valuable substances; however, productive strains have been obtained by random selection and metabolic engineering. There are numerous reviews on xylose and (less) L-arabinose metabolism and conversion to high value substances; however, they mostly are devoted to bacteria or the yeast Saccharomyces cerevisiae. This review is devoted to reviewing pentose metabolism and bioconversion mostly in non-conventional yeasts, which naturally metabolize xylose. Pentose metabolism in the recombinant strains of S. cerevisiae is also considered for comparison. The available data on ribose, xylose, L-arabinose transport, metabolism, regulation of these processes, interaction with glucose catabolism and construction of the productive strains of high-value chemicals or pentose (ribose) itself are described. In addition, genome studies of the natural xylose metabolizing yeasts and available tools for their molecular research are reviewed. Metabolism of other pentoses (2-deoxyribose, D-arabinose, lyxose) is briefly reviewed.
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Affiliation(s)
- Justyna Ruchala
- Department of Microbiology and Molecular Genetics, University of Rzeszow, Zelwerowicza 4, Rzeszow 35-601, Poland.,Department of Molecular Genetics and Biotechnology, Institute of Cell Biology NAS of Ukraine, Drahomanov Street, 14/16, Lviv 79005, Ukraine
| | - Andriy A Sibirny
- Department of Microbiology and Molecular Genetics, University of Rzeszow, Zelwerowicza 4, Rzeszow 35-601, Poland.,Department of Molecular Genetics and Biotechnology, Institute of Cell Biology NAS of Ukraine, Drahomanov Street, 14/16, Lviv 79005, Ukraine
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Efficient preparation of 2-nitroimidazole nucleosides as precursors for hypoxia PET tracers. MONATSHEFTE FUR CHEMIE 2017; 148:83-90. [PMID: 28127094 PMCID: PMC5225226 DOI: 10.1007/s00706-016-1874-8] [Citation(s) in RCA: 0] [Impact Index Per Article: 0] [Reference Citation Analysis] [Abstract] [Key Words] [Track Full Text] [Download PDF] [Figures] [Subscribe] [Scholar Register] [Received: 10/21/2016] [Accepted: 11/06/2016] [Indexed: 11/03/2022]
Abstract
Abstract 2-Deoxy-D-ribose was converted to α/β-mixtures of methyl 3-O-acetyl- and methyl 3-O-benzoyl-2-deoxy-5-(p-toluenesulfonyl)-D-ribofuranosides. These were reacted with boron trichloride to generate ribofuranosyl chlorides, which afforded precursors for tracers to image tumor hypoxia on substitution with salts of 2-nitroimidazole. The anomeric ratio of the nucleosides was delicately influenced by the reaction conditions. Graphical abstract ![]()
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Synthesis of some carbahexopyranoses using Mn/CrCl3 mediated domino reactions and ring closing metathesis. Tetrahedron 2016. [DOI: 10.1016/j.tet.2016.02.044] [Citation(s) in RCA: 8] [Impact Index Per Article: 1.0] [Reference Citation Analysis] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Indexed: 01/10/2023]
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Young IS, Ortiz A, Sawyer JR, Conlon DA, Buono FG, Leung SW, Burt JL, Sortore EW. Selection and Scale-Up Evaluation of an Alternative Route to (−)-(3R,4R)-1-Benzyl-4-(benzylamino)piperidin-3-ol. Org Process Res Dev 2012. [DOI: 10.1021/op300174w] [Citation(s) in RCA: 11] [Impact Index Per Article: 0.9] [Reference Citation Analysis] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Indexed: 11/28/2022]
Affiliation(s)
- Ian S. Young
- Chemical Development, Bristol-Myers Squibb Company, One Squibb Drive, New Brunswick, New Jersey
08903, United States
| | - Adrian Ortiz
- Chemical Development, Bristol-Myers Squibb Company, One Squibb Drive, New Brunswick, New Jersey
08903, United States
| | - James R. Sawyer
- Chemical Development, Bristol-Myers Squibb Company, One Squibb Drive, New Brunswick, New Jersey
08903, United States
| | - David A. Conlon
- Chemical Development, Bristol-Myers Squibb Company, One Squibb Drive, New Brunswick, New Jersey
08903, United States
| | - Frederic G. Buono
- Chemical Development, Bristol-Myers Squibb Company, One Squibb Drive, New Brunswick, New Jersey
08903, United States
| | - Simon W. Leung
- Chemical Development, Bristol-Myers Squibb Company, One Squibb Drive, New Brunswick, New Jersey
08903, United States
| | - Justin L. Burt
- Chemical Development, Bristol-Myers Squibb Company, One Squibb Drive, New Brunswick, New Jersey
08903, United States
| | - Eric W. Sortore
- Chemical Development, Bristol-Myers Squibb Company, One Squibb Drive, New Brunswick, New Jersey
08903, United States
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Ortiz A, Young IS, Sawyer JR, Hsiao Y, Singh A, Sugiyama M, Corbett RM, Chau M, Shi Z, Conlon DA. Synthetic approaches to a chiral 4-amino-3-hydroxy piperidine with pharmaceutical relevance. Org Biomol Chem 2012; 10:5253-7. [DOI: 10.1039/c2ob25411e] [Citation(s) in RCA: 7] [Impact Index Per Article: 0.6] [Reference Citation Analysis] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Indexed: 11/21/2022]
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12
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Doyle MP, Ratnikov M, Liu Y. Intramolecular catalytic asymmetric carbon–hydrogen insertion reactions. Synthetic advantages in total synthesis in comparison with alternative approaches. Org Biomol Chem 2011; 9:4007-16. [DOI: 10.1039/c0ob00698j] [Citation(s) in RCA: 80] [Impact Index Per Article: 6.2] [Reference Citation Analysis] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Indexed: 11/21/2022]
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13
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Airiau E, Girard N, Pizzeti M, Salvadori J, Taddei M, Mann A. Hydroformylation of Alkenylamines. Concise Approaches toward Piperidines, Quinolizidines, and Related Alkaloids. J Org Chem 2010; 75:8670-3. [DOI: 10.1021/jo101776y] [Citation(s) in RCA: 50] [Impact Index Per Article: 3.6] [Reference Citation Analysis] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Indexed: 11/29/2022]
Affiliation(s)
- Etienne Airiau
- Laboratoire d’Innovation Thérapeutique, UMR 7200, Faculté de Pharmacie, Université de Strasbourg, 74, route du Rhin, 67401 Illkirch Graffenstaden, France
| | - Nicolas Girard
- Laboratoire d’Innovation Thérapeutique, UMR 7200, Faculté de Pharmacie, Université de Strasbourg, 74, route du Rhin, 67401 Illkirch Graffenstaden, France
| | - Marianna Pizzeti
- Dipartimento Farmaco Chimico Tecnologico, Università degli Studi di Siena, Via A. Moro 2 53100 Siena, Italy
| | - Jessica Salvadori
- Dipartimento Farmaco Chimico Tecnologico, Università degli Studi di Siena, Via A. Moro 2 53100 Siena, Italy
| | - Maurizio Taddei
- Dipartimento Farmaco Chimico Tecnologico, Università degli Studi di Siena, Via A. Moro 2 53100 Siena, Italy
| | - André Mann
- Laboratoire d’Innovation Thérapeutique, UMR 7200, Faculté de Pharmacie, Université de Strasbourg, 74, route du Rhin, 67401 Illkirch Graffenstaden, France
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Protecting-group-free synthesis of 2-deoxy-aza-sugars. Molecules 2009; 14:5298-307. [PMID: 20032893 PMCID: PMC6254907 DOI: 10.3390/molecules14125298] [Citation(s) in RCA: 23] [Impact Index Per Article: 1.5] [Reference Citation Analysis] [Abstract] [Track Full Text] [Download PDF] [Figures] [Journal Information] [Subscribe] [Scholar Register] [Received: 11/13/2009] [Revised: 12/15/2009] [Accepted: 12/15/2009] [Indexed: 11/16/2022] Open
Abstract
The protecting-group-free asymmetric synthesis of 1,2,4-trideoxy-1,4-imino-L-xylitol is readily achieved in five steps from 2-deoxy-D-ribose and with an overall yield of 48%. Key in this synthesis is the application of our recently developed Vasella-reductive amination and carbamate annulation methodologies to the synthesis of 2-deoxy-aza-sugars. The carbamate annulation occurred with excellent yield and diastereoselectively (>20:1 d.r.), in favour of the 3,4-cis isomer.
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Ludek OR, Marquez VE. A greener enantioselective synthesis of the antiviral agent North-methanocarbathymidine (N-MCT) from 2-deoxy-d-ribose. Tetrahedron 2009; 65:8461-8467. [PMID: 20625519 PMCID: PMC2900805 DOI: 10.1016/j.tet.2009.08.035] [Citation(s) in RCA: 16] [Impact Index Per Article: 1.1] [Reference Citation Analysis] [Abstract] [Key Words] [Grants] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Indexed: 10/20/2022]
Abstract
An enantioselective synthesis of suitably protected (1R,2S,4S,5S)-4-amino-1-(hydroxymethyl)bicyclo[3.1.0]hexan-2-ol, a key starting material for the synthesis of conformationally locked carbocyclic nucleosides, including the antiviral active North-methanocarba thymidine, is reported. Starting from 2-deoxyribose the target Boc-protected amine was prepared in 33% overall yield under condition that are ecologically friendlier than previous methods.
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Affiliation(s)
- Olaf R. Ludek
- Laboratory of Medicinal Chemistry, Center for Cancer Research, National Cancer Institute at Frederick, National Institutes of Health, Frederick, MD 21702, USA
| | - Victor E. Marquez
- Laboratory of Medicinal Chemistry, Center for Cancer Research, National Cancer Institute at Frederick, National Institutes of Health, Frederick, MD 21702, USA
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