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Tripathy U, Steer RP. The photophysics of metalloporphyrins excited in their Soret and higher energy UV absorption bands. J PORPHYR PHTHALOCYA 2012. [DOI: 10.1142/s1088424607000291] [Citation(s) in RCA: 29] [Impact Index Per Article: 2.2] [Reference Citation Analysis] [Abstract] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Indexed: 11/18/2022]
Abstract
Photophysical processes involving the higher electronic excited states of diamagnetic porphyrins and metalloporphyrins are critically reviewed. Intramolecular electronic relaxation of one-photon Soret-excited molecules in solution is now known to involve processes other than S 2 - S 1 internal conversion; dark electronic states are implicated. Sequential two-photon excitation to produce gerade excited singlet states ( S n , n > 2) results in relaxation dynamics that are quantitatively different from those resulting from one-photon excitation to ungerade states of about the same energy. Intermolecular electron and electronic energy transfer involving Soret-excited metalloporphyrins and intramolecular electron and electronic energy transfer in Soret-excited dyads and larger arrays containing porphyrins are reviewed. Metalloporphyrins containing main group metals or transition metals with filled d orbitals exhibit relaxation dynamics that differ from metalloporphyrins containing transition metals with unfilled d orbitals. Non-linear phenomena associated with multi-photon excitation of diamagnetic metalloporphyrins are also reviewed.
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Affiliation(s)
- Umakanta Tripathy
- Department of Chemistry, University of Saskatchewan, Saskatoon, Saskatchewan S7N 5C9, Canada
| | - Ronald P. Steer
- Department of Chemistry, University of Saskatchewan, Saskatoon, Saskatchewan S7N 5C9, Canada
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Paul A, Watson RM, Wierzbinski E, Davis KL, Sha A, Achim C, Waldeck DH. Distance dependence of the charge transfer rate for peptide nucleic acid monolayers. J Phys Chem B 2009; 114:14140-8. [PMID: 19691305 DOI: 10.1021/jp906910h] [Citation(s) in RCA: 41] [Impact Index Per Article: 2.6] [Reference Citation Analysis] [Abstract] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Indexed: 12/25/2022]
Abstract
Charge transfer studies have been performed for self-assembled monolayers of single-stranded and double-stranded peptide nucleic acids (PNAs) having a C-terminus cysteine and an N-terminus ferrocene group as a redox reporter. The decay of the charge transfer rate with distance was strong for short single-stranded PNA molecules and weak for long single-stranded and double-stranded PNAs. Possible mechanisms for this "softening" of the distance dependence are discussed. The nature of the mechanism change can be explained by a transition of the charge transport mechanism from superexchange-mediated tunneling for short PNAs to a "hopping" mechanism for long PNAs.
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Affiliation(s)
- Amit Paul
- Department of Chemistry, University of Pittsburgh, Pennsylvania 15260, USA
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Paul A, Bezer S, Venkatramani R, Kocsis L, Wierzbinski E, Balaeff A, Keinan S, Beratan DN, Achim C, Waldeck DH. Role of nucleobase energetics and nucleobase interactions in single-stranded peptide nucleic acid charge transfer. J Am Chem Soc 2009; 131:6498-507. [PMID: 19382798 DOI: 10.1021/ja9000163] [Citation(s) in RCA: 46] [Impact Index Per Article: 2.9] [Reference Citation Analysis] [Abstract] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Indexed: 11/30/2022]
Abstract
Self-assembled monolayers of single-stranded (ss) peptide nucleic acids (PNAs) containing seven nucleotides (TTTXTTT), a C-terminus cysteine, and an N-terminus ferrocene redox group were formed on gold electrodes. The PNA monomer group (X) was selected to be either cytosine (C), thymine (T), adenine (A), guanine (G), or a methyl group (Bk). The charge transfer rate through the oligonucleotides was found to correlate with the oxidation potential of X. Kinetic measurements and computational studies of the ss-PNA fragments show that a nucleobase mediated charge transport mechanism in the deep tunneling superexchange regime can explain the observed dependence of the kinetics of charge transfer on the PNA sequence. Theoretical analysis suggests that the charge transport is dominantly hole-mediated and takes place through the filled bridge orbitals. The strongest contribution to conductance comes from the highest filled orbitals (HOMO, HOMO-1, and HOMO-2) of individual bases, with a rapid drop off in contributions from lower lying filled orbitals. Our studies further suggest that the linear correlation observed between the experimental charge transfer rates and the oxidation potential of base X arises from weak average interbase couplings and similar stacking geometries for the four TTTXTTT systems.
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Affiliation(s)
- Amit Paul
- Department of Chemistry, University of Pittsburgh, Pittsburgh, Pennsylvania 15260, USA
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Li H, Liew KM, Zhang XQ, Zhang JX, Liu XF, Bian XF. Electron-Conduction Properties of Fe−Al Alloy Nanowires. J Phys Chem B 2008; 112:15588-95. [DOI: 10.1021/jp806640u] [Citation(s) in RCA: 23] [Impact Index Per Article: 1.4] [Reference Citation Analysis] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Indexed: 11/28/2022]
Affiliation(s)
- H. Li
- Key Laboratory of Liquid Structure and Heredity of Materials, Ministry of Education, School of Materials Science and Engineering, Shandong University, Department of Building and Construction, City University of Hong Kong, Kowloon, Hong Kong
| | - K. M. Liew
- Department of Building and Construction, City University of Hong Kong, Kowloon, Hong Kong
| | - X. Q. Zhang
- Physics Department, Ocean University of China, Qingdao, China
| | - J. X. Zhang
- Key Laboratory of Liquid Structure and Heredity of Materials, Ministry of Education, School of Materials Science and Engineering, Shandong University, Shandong, China
| | - X. F. Liu
- Key Laboratory of Liquid Structure and Heredity of Materials, Ministry of Education, School of Materials Science and Engineering, Shandong University, Shandong, China
| | - X. F. Bian
- Key Laboratory of Liquid Structure and Heredity of Materials, Ministry of Education, School of Materials Science and Engineering, Shandong University, Shandong, China
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Autobiographical Sketch. Mol Phys 2008. [DOI: 10.1080/00268970701794332] [Citation(s) in RCA: 0] [Impact Index Per Article: 0] [Reference Citation Analysis] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Indexed: 10/22/2022]
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Remacle F, Levine RD. Electrical transport in saturated and conjugated molecular wires. Faraday Discuss 2006; 131:45-67; discussion 91-109. [PMID: 16512364 DOI: 10.1039/b505696a] [Citation(s) in RCA: 25] [Impact Index Per Article: 1.3] [Reference Citation Analysis] [Abstract] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Indexed: 12/15/2022]
Abstract
The mechanism for charge transport in dithio molecular wires tethered between two gold electrodes is investigated, using both a steady state and a time-dependent quantum mechanical approach. The interface with the electrodes is modeled by two gold clusters and the electronic structure of the entire Au(n)-S-bridge-S-Au(n) system is computed ab initio at the DFT level and semi-empirically, with the extended Hückel theory. Current vs. applied bias, I-V, curves are computed using a scattering Landauer-type formalism in a steady state picture. The applied source-drain and gate voltages are included at the ab initio level in the electronic Hamiltonian and found to influence strongly the I-V characteristics. The time evolution of a non stationary electronic wave packet initially localized on a gold atom at one end of the extended system shows that charge transfer proceeds sequentially, by a hopping mechanism, to the opposite end. Analysis of the effective one electron Hamiltonian matrix shows that the sulfur atom endows a resistive character to the Au-C-S junctions. The S atoms are however rather well coupled to both the gold and carbon atoms so that typically the super exchange limit for electron transfer is not reached unless the molecular bridge is saturated and the Fermi window function is narrow.
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Affiliation(s)
- F Remacle
- Département de Chimie, B6c, Université de Liège, B4000, Liège, Belgium.
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Affiliation(s)
- Alexey Shavel
- Institute of Physical Chemistry, University of Hamburg, Grindelallee 117, 20146 Hamburg, Germany, Fax: +49‐351‐46337164
| | - Nikolai Gaponik
- Institute of Physical Chemistry, University of Hamburg, Grindelallee 117, 20146 Hamburg, Germany, Fax: +49‐351‐46337164
- Institute of Physical Chemistry and Electrochemistry, Technical University of Dresden, Bergstraße 66b, 01062 Dresden, Germany
| | - Alexander Eychmüller
- Institute of Physical Chemistry, University of Hamburg, Grindelallee 117, 20146 Hamburg, Germany, Fax: +49‐351‐46337164
- Institute of Physical Chemistry and Electrochemistry, Technical University of Dresden, Bergstraße 66b, 01062 Dresden, Germany
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Vertical Ionization Energies of α-L-Amino Acids as a Function of Their Conformation: an Ab Initio Study. Int J Mol Sci 2004. [DOI: 10.3390/i5110301] [Citation(s) in RCA: 61] [Impact Index Per Article: 2.9] [Reference Citation Analysis] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Indexed: 11/16/2022] Open
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Liljeroth P, Vanmaekelbergh D, Ruiz V, Kontturi K, Jiang H, Kauppinen E, Quinn BM. Electron Transport in Two-Dimensional Arrays of Gold Nanocrystals Investigated by Scanning Electrochemical Microscopy. J Am Chem Soc 2004; 126:7126-32. [PMID: 15174884 DOI: 10.1021/ja0493188] [Citation(s) in RCA: 58] [Impact Index Per Article: 2.8] [Reference Citation Analysis] [Abstract] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Indexed: 02/05/2023]
Abstract
This article reports the use of the scanning electrochemical microscope (SECM) to investigate the electronic properties of Langmuir monolayers of alkane thiol protected gold nanocrystals (NCs). A substantial increase in monolayer conductivity upon mechanical compression of the Au NC monolayer is reported for the first time. This may be the room temperature signature of the insulator to metal transition previously reported for comparable silver NC monolayers. Factors influencing the conductivity of the monolayer NC array are discussed.
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Affiliation(s)
- Peter Liljeroth
- Condensed Matter and Interfaces, Debye Institute, University of Utrecht, P.O. Box 80000, 3508 TA Utrecht, The Netherlands
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Van Voorhis T, Reichman DR. Semiclassical representations of electronic structure and dynamics. J Chem Phys 2004; 120:579-89. [PMID: 15267892 DOI: 10.1063/1.1630963] [Citation(s) in RCA: 10] [Impact Index Per Article: 0.5] [Reference Citation Analysis] [Abstract] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Indexed: 11/14/2022] Open
Abstract
We use a new formulation of the semiclassical coherent state propagator to derive and evaluate several different approximate representations of electron dynamics. For each representation we examine: (1) its ability to treat quantum effects and electron correlation, (2) its expected scaling with system size, and (3) the types of systems for which it can be used. We also apply two of the methods to a pair of model problems, namely the minimal basis electron dynamics in H2 and the magnetization dynamics in a cluster model of the Kagome lattice, in order to verify the feasibility of these approaches for realistic systems. Based on all these criteria, we find that the representation that takes the electron spins as the classical variables is particularly promising for the quantitative and qualitative description of large systems.
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Affiliation(s)
- Troy Van Voorhis
- Department of Chemistry and Chemical Biology, Harvard University, Cambridge, Massachusetts 02138, USA.
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Remacle F. Surface potential measurements as a probe of the charge localization in assemblies of metallic quantum dots: A computational study. J Chem Phys 2003. [DOI: 10.1063/1.1594176] [Citation(s) in RCA: 0] [Impact Index Per Article: 0] [Reference Citation Analysis] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Indexed: 11/14/2022] Open
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Remacle F, Levine RD. Current-voltage-temperature characteristics for 2D arrays of metallic quantum dots. Isr J Chem 2002. [DOI: 10.1560/n79e-63lc-uk4y-mqq6] [Citation(s) in RCA: 13] [Impact Index Per Article: 0.6] [Reference Citation Analysis] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Indexed: 11/18/2022]
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Wang JX, Kais S, Remacle F, Levine RD. Size Effects in the Electronic Properties of Finite Arrays of Exchange-Coupled Quantum Dots. J Phys Chem B 2002. [DOI: 10.1021/jp026452a] [Citation(s) in RCA: 11] [Impact Index Per Article: 0.5] [Reference Citation Analysis] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Indexed: 11/30/2022]
Affiliation(s)
- J. X. Wang
- Department of Chemistry, Purdue University, West Lafayette, Indiana 47907, The Fritz Haber Research Center for Molecular Dynamics, The Hebrew University, 91904 Jerusalem, Israel, and Department of Chemistry, B6C, Université de Liège, B4000 Liège, Belgium
| | - S. Kais
- Department of Chemistry, Purdue University, West Lafayette, Indiana 47907, The Fritz Haber Research Center for Molecular Dynamics, The Hebrew University, 91904 Jerusalem, Israel, and Department of Chemistry, B6C, Université de Liège, B4000 Liège, Belgium
| | - F. Remacle
- Department of Chemistry, Purdue University, West Lafayette, Indiana 47907, The Fritz Haber Research Center for Molecular Dynamics, The Hebrew University, 91904 Jerusalem, Israel, and Department of Chemistry, B6C, Université de Liège, B4000 Liège, Belgium
| | - R. D. Levine
- Department of Chemistry, Purdue University, West Lafayette, Indiana 47907, The Fritz Haber Research Center for Molecular Dynamics, The Hebrew University, 91904 Jerusalem, Israel, and Department of Chemistry, B6C, Université de Liège, B4000 Liège, Belgium
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Beverly KC, Sample JL, Sampaio JF, Remacle F, Heath JR, Levine RD. Quantum dot artificial solids: understanding the static and dynamic role of size and packing disorder. Proc Natl Acad Sci U S A 2002; 99 Suppl 2:6456-9. [PMID: 11880611 PMCID: PMC128549 DOI: 10.1073/pnas.251537898] [Citation(s) in RCA: 45] [Impact Index Per Article: 2.0] [Reference Citation Analysis] [Abstract] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Indexed: 11/18/2022] Open
Abstract
This perspective examines quantum dot (QD) superlattices as model systems for achieving a general understanding of the electronic structure of solids and devices built from nanoscale components. QD arrays are artificial two-dimensional solids, with novel optical and electric properties, which can be experimentally tuned. The control of the properties is primarily by means of the selection of the composition and size of the individual QDs and secondly, through their packing. The freedom of the architectural design is constrained by nature insisting on diversity. Even the best synthesis and separation methods do not yield dots of exactly the same size nor is the packing in the self-assembled array perfectly regular. A series of experiments, using both spectroscopic and electrical probes, has characterized the effects of disorder for arrays of metallic dots. We review these results and the corresponding theory. In particular, we discuss temperature-dependent transport experiments as the next step in the characterization of these arrays.
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Affiliation(s)
- K C Beverly
- Department of Chemistry and Biochemistry, University of California, Los Angeles, CA 90095, USA
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Remacle F, Beverly KC, Heath JR, Levine RD. Conductivity of 2-D Ag Quantum Dot Arrays: Computational Study of the Role of Size and Packing Disorder at Low Temperatures. J Phys Chem B 2002. [DOI: 10.1021/jp013937a] [Citation(s) in RCA: 34] [Impact Index Per Article: 1.5] [Reference Citation Analysis] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Indexed: 11/28/2022]
Affiliation(s)
- F. Remacle
- The Fritz Haber Research Center for Molecular Dynamics, The Hebrew University of Jerusalem, Jerusalem 91904, Israel, Département de Chimie, B6c, Université de Liège, B4000 Liège, Belgium, The California NanoSystems Institute and the Department of Chemistry and Biochemistry, The University of California Los Angeles, Los Angeles, California 90095
| | - K. C. Beverly
- The Fritz Haber Research Center for Molecular Dynamics, The Hebrew University of Jerusalem, Jerusalem 91904, Israel, Département de Chimie, B6c, Université de Liège, B4000 Liège, Belgium, The California NanoSystems Institute and the Department of Chemistry and Biochemistry, The University of California Los Angeles, Los Angeles, California 90095
| | - J. R. Heath
- The Fritz Haber Research Center for Molecular Dynamics, The Hebrew University of Jerusalem, Jerusalem 91904, Israel, Département de Chimie, B6c, Université de Liège, B4000 Liège, Belgium, The California NanoSystems Institute and the Department of Chemistry and Biochemistry, The University of California Los Angeles, Los Angeles, California 90095
| | - R. D. Levine
- The Fritz Haber Research Center for Molecular Dynamics, The Hebrew University of Jerusalem, Jerusalem 91904, Israel, Département de Chimie, B6c, Université de Liège, B4000 Liège, Belgium, The California NanoSystems Institute and the Department of Chemistry and Biochemistry, The University of California Los Angeles, Los Angeles, California 90095
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