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Electron paramagnetic resonance study of vanadium exchanged H-ZSM5 prepared by vapor reaction of VCl4. The role of 17O isotope labelling in the characterisation of the metal oxide interaction. J Catal 2020. [DOI: 10.1016/j.jcat.2020.06.029] [Citation(s) in RCA: 4] [Impact Index Per Article: 0.8] [Reference Citation Analysis] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Indexed: 11/21/2022]
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2
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Tussupbayev SN, Kudaibergenova GM. An Extended Benchmark of Density Functionals for Calculating the Standard Reduction Potentials of Vanadium Compounds. RUSSIAN JOURNAL OF PHYSICAL CHEMISTRY A 2020. [DOI: 10.1134/s0036024420080282] [Citation(s) in RCA: 0] [Impact Index Per Article: 0] [Reference Citation Analysis] [Track Full Text] [Subscribe] [Scholar Register] [Indexed: 11/22/2022]
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3
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Tussupbayev S, Kudaibergenova G. Benchmark study of the performance of density functional theory for reduction potentials of vanadium compounds. CHEMICAL BULLETIN OF KAZAKH NATIONAL UNIVERSITY 2020. [DOI: 10.15328/cb1093] [Citation(s) in RCA: 0] [Impact Index Per Article: 0] [Reference Citation Analysis] [Abstract] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Indexed: 11/23/2022] Open
Abstract
A systematic benchmark study was performed for the first time to investigate the performance of density functional theory for calculation of reduction potentials of vanadium compounds. Six density functionals of different types were selected for testing: local OLYP and M06L, global hybrid O3LYP and B3LYP, as well as, meta-hybrid functionals TPSSh and M06. Local and hybrid functionals with a relatively high contribution of Hartree-Fock exchange showed unsatisfactory results. In particular, the widely used hybrid functional B3LYP for the transformation VIII→VII occurring in the vanadium redox flow battery yields a negative value of the standard potential instead of a positive one. Among the tested functionals the smallest deviation from the experimental data provides the meta-hybrid functional TPSSh with a 10% contribution of the Hartree-Fock exchange. The computational protocol to calculate redox potentials of vanadium compounds is suggested.
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4
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Peys N, Adriaensens P, Van Doorslaer S, Gielis S, Peeters E, De Dobbelaere C, De Gendt S, Hardy A, Van Bael MK. Aqueous citrato-oxovanadate(IV) precursor solutions for VO2: synthesis, spectroscopic investigation and thermal analysis. Dalton Trans 2015; 43:12614-23. [PMID: 25005054 DOI: 10.1039/c4dt01346h] [Citation(s) in RCA: 15] [Impact Index Per Article: 1.5] [Reference Citation Analysis] [Abstract] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Indexed: 11/21/2022]
Abstract
An aqueous precursor solution, containing citrato-VO(2+) complexes, is synthesized for the formation of monoclinic VO2. With regard to the decomposition of the VO(2+) complexes towards vanadium oxide formation, it is important to gain insights into the chemical structure and transformations of the precursor during synthesis and thermal treatment. Hence, the conversion of the cyclic [V4O12](4-) ion to the VO(2+) ion in aqueous solution, using oxalic acid as an acidifier and a reducing agent, is studied by (51)Vanadium nuclear magnetic resonance spectroscopy. The citrate complexation of this VO(2+) ion and the differentiation between a solution containing citrato-oxalato-VO(2+) and citrato-VO(2+) complexes are studied by electron paramagnetic resonance and Fourier transform infra-red spectroscopy. In both solutions, the VO(2+) containing complex is mononuclear and has a distorted octahedral geometry with a fourfold R-CO2(-) ligation at the equatorial positions and likely a fifth R-CO2(-) ligation at the axial position. Small differences in the thermal decomposition pathway between the gel containing citrato-oxalato-VO(2+) complexes and the oxalate-free gel containing citrato-VO(2+) complexes are observed between 150 and 200 °C in air and are assigned to the presence of (NH4)2C2O4 in the citrato-oxalato-VO(2+) solution. Both precursor solutions are successfully used for the formation of crystalline vanadium oxide nanostructures on SiO2, after thermal annealing at 500 °C in a 0.1% O2 atmosphere. However, the citrato-oxalato-VO(2+) and the oxalate-free citrato-VO(2+) solution result in the formation of monoclinic V6O13 and monoclinic VO2, respectively.
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Affiliation(s)
- Nick Peys
- Hasselt University, Institute for Materials Research, Inorganic and Physical Chemistry, Diepenbeek, Belgium.
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5
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Peys N, Maurelli S, Reekmans G, Adriaensens P, De Gendt S, Hardy A, Van Doorslaer S, Van Bael MK. Chemical composition of an aqueous oxalato-/citrato-VO(2+) solution as determinant for vanadium oxide phase formation. Inorg Chem 2014; 54:69-78. [PMID: 25517211 DOI: 10.1021/ic5015779] [Citation(s) in RCA: 5] [Impact Index Per Article: 0.5] [Reference Citation Analysis] [Abstract] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Indexed: 11/29/2022]
Abstract
Aqueous solutions of oxalato- and citrato-VO(2+) complexes are prepared, and their ligand exchange reaction is investigated as a function of the amount of citrate present in the aqueous solution via continuous-wave electron paramagnetic resonance (CW EPR) and hyperfine sublevel correlation (HYSCORE) spectroscopy. With a low amount of citrate, monomeric cis-oxalato-VO(2+) complexes occur with a distorted square-pyramidal geometry. As the amount of citrate increases, oxalate is gradually exchanged for citrate. This leads to (i) an intermediate situation of monomeric VO(2+) complexes with a mix of oxalate/citrate ligands and (ii) a final situation of both monomeric and dimeric complexes with exclusively citrato ligands. The monomeric citrato-VO(2+) complexes dominate (abundance > 80%) and are characterized by a 6-fold chelation of the vanadium(IV) ion by 4 RCO2(-) ligands at the equatorial positions and a H2O/R-OH ligand at the axial position. The different redox stabilities of these complexes, relative to that of dissolved O2 in the aqueous solution, is analyzed via (51)V NMR. It is shown that the oxidation rate is the highest for the oxalato-VO(2+) complexes. In addition, the stability of the VO(2+) complexes can be drastically improved by evacuation of the dissolved O2 from the solution and subsequent storage in a N2 ambient atmosphere. The vanadium oxide phase formation process, starting with the chemical solution deposition of the aqueous solutions and continuing with subsequent processing in an ambient 0.1% O2 atmosphere, differs for the two complexes. The oxalato-VO(2+) complexes turn into the oxygen-deficient crystalline VO2 B at 400 °C, which then turns into crystalline V6O13 at 500 °C. In contrast, the citrato-VO(2+) complexes form an amorphous film at 400 °C that crystallizes into VO2 M1 and V6O13 at 500 °C.
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Affiliation(s)
- Nick Peys
- Institute for Materials Research, Inorganic and Physical Chemistry and ‡Applied and Analytical Chemistry, Institute for Materials Research, Hasselt University , Diepenbeek, Belgium
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6
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Peys N, Ling Y, Dewulf D, Gielis S, De Dobbelaere C, Cuypers D, Adriaensens P, Van Doorslaer S, De Gendt S, Hardy A, Van Bael MK. V6O13films by control of the oxidation state from aqueous precursor to crystalline phase. Dalton Trans 2013; 42:959-68. [DOI: 10.1039/c2dt31857a] [Citation(s) in RCA: 22] [Impact Index Per Article: 1.8] [Reference Citation Analysis] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Indexed: 11/21/2022]
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7
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Matsuoka N, Tsuchimoto M, Yoshioka N. Theoretical Study of Magnetic Properties of Oxovanadium(IV) Complex Self-Assemblies with Tetradentate Schiff Base Ligands. J Phys Chem B 2011; 115:8465-73. [DOI: 10.1021/jp111779k] [Citation(s) in RCA: 5] [Impact Index Per Article: 0.4] [Reference Citation Analysis] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Indexed: 01/30/2023]
Affiliation(s)
- Naoki Matsuoka
- Department of Applied Chemistry, Faculty of Science and Technology, Keio University, Hiyoshi 3-14-1, Kohoku-ku, Yokohama 223-8522, Japan
| | - Masanobu Tsuchimoto
- Department of Chemistry, Faculty of Engineering, Chiba Institute of Technology, Shibazono 2-1-1, Narashino, Chiba 275-0023, Japan
| | - Naoki Yoshioka
- Department of Applied Chemistry, Faculty of Science and Technology, Keio University, Hiyoshi 3-14-1, Kohoku-ku, Yokohama 223-8522, Japan
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8
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Sala LF, González JC, García SI, Frascaroli MI, Van Doorslaer S. Detection and structural characterization of oxo-chromium(V)-sugar complexes by electron paramagnetic resonance. Adv Carbohydr Chem Biochem 2011; 66:69-120. [PMID: 22123188 DOI: 10.1016/b978-0-12-385518-3.00002-x] [Citation(s) in RCA: 11] [Impact Index Per Article: 0.8] [Reference Citation Analysis] [Abstract] [MESH Headings] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Indexed: 11/16/2022]
Abstract
This article describes the detection and characterization of oxo-Cr(V)-saccharide coordination compounds, produced during chromic oxidation of carbohydrates by Cr(VI) and Cr(V), using electron paramagnetic resonance (EPR) spectroscopy. After an introduction into the main importance of chromium (bio)chemistry, and more specifically the oxo-chromium(V)-sugar complexes, a general overview is given of the current state-of-the-art EPR techniques. The next step reviews which types of EPR spectroscopy are currently applied to oxo-Cr(V) complexes, and what information about these systems can be gained from such experiments. The advantages and pitfalls of the different approaches are discussed, and it is shown that the potential of high-field and pulsed EPR techniques is as yet still largely unexploited in the field of oxo-Cr(V) complexes. Subsequently, the discussion focuses on the analysis of oxo-Cr(V) complexes of different types of sugars and the implications of the results in terms of understanding chromium (bio)chemistry.
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Affiliation(s)
- Luis F Sala
- Departamento de Químico Física-Área Química General, Facultad de Ciencias Bioquímicas y Farmacéuticas, Universidad Nacional de Rosario, Rosario, Santa Fe, Argentina
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9
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Hyperfine and Quadrupolar Interactions in Vanadyl Proteins and Model Complexes: Theory and Experiment. METALS IN BIOLOGY 2010. [DOI: 10.1007/978-1-4419-1139-1_11] [Citation(s) in RCA: 9] [Impact Index Per Article: 0.6] [Reference Citation Analysis] [Track Full Text] [Subscribe] [Scholar Register] [Indexed: 02/10/2023]
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10
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Nagarajan V, Müller B, Storcheva O, Köhler K, Pöppl A. Structure and bonding of [V(IV)O(acac)(2)] on the surface of AlF(3) as studied by pulsed electron nuclear double resonance and hyperfine sublevel correlation spectroscopy. Phys Chem Chem Phys 2009; 11:6849-54. [PMID: 19639160 DOI: 10.1039/b903826b] [Citation(s) in RCA: 6] [Impact Index Per Article: 0.4] [Reference Citation Analysis] [Abstract] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Indexed: 11/21/2022]
Abstract
Well defined isolated [V(IV)O(acac)(2)] surface complexes have been prepared on aluminium trifluoride, alpha-AlF(3), as solid support by equilibrium adsorption from liquid solution. The paramagnetic vanadium(iv) surface complexes were studied by pulsed electron spin resonance spectroscopy in combination with quantum chemical calculations using density functional theory. (19)F and (27)Al ligand hyperfine interactions with the nuclei of the AlF(3) support observed by pulsed electron nuclear double resonance and hyperfine sublevel correlation spectroscopy experiments verify the direct chemical bonding between the vanadium and a surface fluorine atom. Detailed analysis of the ligand hyperfine couplings supported by quantum chemical calculations indicates that the axial position of [V(IV)O(acac)(2)]trans to the oxo ligand is bound directly to a terminal fluorine atom of the support. Analysis of the (1)H ligand hyperfine interaction revealed that an acidic H(+) of the AlF(3) surface protonated a donor oxygen of the acetylacetone ligand in the surface complex.
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11
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Colaneri MJ, Vitali J, Peisach J. Aspects of structure and bonding in copper-amino acid complexes revealed by single-crystal EPR/ENDOR spectroscopy and density functional calculations. J Phys Chem A 2009; 113:5700-9. [PMID: 19378965 PMCID: PMC2896622 DOI: 10.1021/jp811249s] [Citation(s) in RCA: 5] [Impact Index Per Article: 0.3] [Reference Citation Analysis] [Abstract] [Key Words] [MESH Headings] [Grants] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Indexed: 11/30/2022]
Abstract
This work deduces from a series of well-defined copper-doped amino acid crystals, relationships between structural features of the copper complexes, and ligand-bound proton hyperfine parameters. These were established by combining results from electron paramagnetic resonance (EPR)/electron-nuclear double resonance (ENDOR) studies, crystallography, and were further assessed by quantum mechanical (QM) calculations. A detailed evaluation of previous studies on Cu(2+) doped into alpha-glycine, triglycine sulfate, alpha-glycylglycine, and L-alanine crystals reveal correlations between geometric features of the copper sites and proton hyperfine couplings from amino-bound and carbon-bound hydrogens. Experimental variations in proton isotropic hyperfine coupling values (a(iso)) could be fit to cosine-square dependences on dihedral angles, namely, for C(alpha)-bound hydrogens, a(iso) = -1.09 + 8.21 cos(2) theta MHz, and for amino hydrogens, a(iso) = -6.16 + 4.15 cos(2) phi MHz. For the C(alpha) hydrogens, this dependency suggests a hyperconjugative-like mechanism for transfer of spin density into the hydrogen 1s orbital. In the course of this work, it was also necessary to reanalyze the ENDOR measurements from Cu(2+)-doped alpha-glycine because the initial study determined the (14)N coupling parameters without holding its nuclear quadrupole tensor traceless. This new treatment of the data was needed to correctly align the (14)N hyperfine tensor principal directions in the molecular complex. To provide a theoretical basis for the coupling variations, QM calculations performed at the DFT level were used to compute the proton hyperfine tensors in the four crystal complexes as well as in a geometry-optimized Cu(2+)(glycine)(2) model. These theoretical calculations confirmed systematic changes in couplings with dihedral angles but greatly overestimated the experimental geometric sensitivity to the amino hydrogen isotropic coupling.
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Affiliation(s)
- Michael J. Colaneri
- Department of Chemistry and Physics, State University of New York at Old Westbury, Old Westbury, New York 11568
| | - Jacqueline Vitali
- Department of Physics, Cleveland State University, Euclid Avenue and East 24 Street, Cleveland, Ohio, 44115
| | - Jack Peisach
- Department of Physiology and Biophysics, Albert Einstein College of Medicine, 1300 Morris Park Avenue, Bronx, New York 10461
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12
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Schrauben JN, Guo D, McCracken JL, McCusker JK. Electronic structure of [Ga2(tren)2(CAsq,cat)](BPh4)2(BF4): An EPR, ENDOR, and density functional study. Inorganica Chim Acta 2008. [DOI: 10.1016/j.ica.2008.03.021] [Citation(s) in RCA: 6] [Impact Index Per Article: 0.4] [Reference Citation Analysis] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Indexed: 11/17/2022]
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13
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Structural basis for VO2+-inhibition of nitrogenase activity: (B) pH-sensitive inner-sphere rearrangements in the 1H-environment of the metal coordination site of the nitrogenase Fe–protein identified by ENDOR spectroscopy. J Biol Inorg Chem 2008; 13:637-50. [DOI: 10.1007/s00775-008-0364-9] [Citation(s) in RCA: 3] [Impact Index Per Article: 0.2] [Reference Citation Analysis] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Received: 11/30/2007] [Accepted: 03/05/2008] [Indexed: 11/25/2022]
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14
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Chiesa M, Meynen V, Van Doorslaer S, Cool P, Vansant EF. Vanadium Silicalite-1 Nanoparticles Deposition onto the Mesoporous Walls of SBA-15. Mechanistic Insights from a Combined EPR and Raman Study. J Am Chem Soc 2006; 128:8955-63. [PMID: 16819892 DOI: 10.1021/ja061630p] [Citation(s) in RCA: 30] [Impact Index Per Article: 1.6] [Reference Citation Analysis] [Abstract] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Indexed: 11/28/2022]
Abstract
Continuous Wave (CW) and pulsed Electron Paramagnetic Resonance (EPR) spectroscopy in conjunction with Raman spectroscopy are used to investigate the properties of Vanadium Silicalite-1 (VS-1) nanoparticles dispersed onto the mesoporous walls of SBA-15 silica. The properties of the deposited zeolite nanoparticles are found to be remarkably different from those of the full grown VS-1 zeolite. Monitoring of the local VO(2+) environment in the noncalcined nanoparticles in SBA-15 reveals that, in contrast to the full grown zeolite case, these sites are highly hydrophilic. Also, the stability of the TPAOH template is found to be affected by acidification of the nanoparticles. These results promise to be of great importance in elucidating the formation mechanism of TPAOH-templated zeolitic nanoparticles and their incorporation in mesoporous silica materials.
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Affiliation(s)
- Mario Chiesa
- Dipartimento di Chimica IFM, Università di Torino and NIS, Nanostructured Interfaces and Surfaces Centre of Excellence,via P. Giuria 7, 10125, Torino, Italy
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15
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Baute D, Goldfarb D. The 17O Hyperfine Interaction in V17O(H217O)52+ and Mn(H217O)62+ Determined by High Field ENDOR Aided by DFT Calculations. J Phys Chem A 2005; 109:7865-71. [PMID: 16834167 DOI: 10.1021/jp052132q] [Citation(s) in RCA: 39] [Impact Index Per Article: 2.0] [Reference Citation Analysis] [Abstract] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Indexed: 11/28/2022]
Abstract
The 17O hyperfine interaction of the water ligands and the V=O oxygen in the vanadyl aquo complex and of the water ligands in the Mn2+ aquo complex in a frozen solution were determined by W-band (95 GHz) electron-nuclear double resonance (ENDOR). Orientation selective ENDOR spectra of the vanadyl complex exhibited two distinct signals assigned to the vanadyl oxygen and the water ligands. The assignment of the signals was done based on the orientation of the principal axis system of the hyperfine interaction and through comparison with the hyperfine interaction predicted by DFT calculations. The latter showed good agreement with the experimental values thus providing clear evidence that the vanadyl oxygen is exchangeable. The interaction of the vanadyl oxygen, especially its anisotropic part, was significantly larger than that of the water oxygens due to a relatively large negative spin density on the oxygen p orbitals. The 17O hyperfine interaction of the water ligand in the Mn2+ complex was found to be similar to that of the water ligand in the vanadyl complex and was in good agreement with earlier single-crystal data. Here, due to the large thermal polarization, it was also possible to determine the absolute sign of the hyperfine coupling by selecting different EPR transitions.
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Affiliation(s)
- Debbie Baute
- Department of Chemical Physics, The Weizmann Institute of Science, Rehovot, Israel
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16
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17
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Cui X, Calhorda M, Costa P, Delgado R, Drew M, Félix V. Structure, Characterization, and Metal-Complexation Properties of a New Tetraazamacrocycle Containing Two Phenolic Pendant Arms. Helv Chim Acta 2004. [DOI: 10.1002/hlca.200490235] [Citation(s) in RCA: 4] [Impact Index Per Article: 0.2] [Reference Citation Analysis] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Indexed: 11/06/2022]
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18
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Paine TK, Weyhermüller T, Slep LD, Neese F, Bill E, Bothe E, Wieghardt K, Chaudhuri P. Nonoxovanadium(IV) and Oxovanadium(V) Complexes with Mixed O, X, O-Donor Ligands (X = S, Se, P, or PO). Inorg Chem 2004; 43:7324-38. [PMID: 15530082 DOI: 10.1021/ic040052f] [Citation(s) in RCA: 74] [Impact Index Per Article: 3.5] [Reference Citation Analysis] [Abstract] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Indexed: 11/30/2022]
Abstract
Ligating properties of four potentially tridentate bisphenol ligands containing [O, X, O] donor atoms (X = S 1, Se 2, P 3, or P=O 4) toward the vanadium ions in +IV or +V oxidation states have been studied. Each ligand with different heterodonor atoms yields as expected nonoxovanadium(IV) complexes, V(IV)L(2), whose structures have been determined by X-ray diffraction methods as having six-coordinate V(IV), VO(4)X(2), core. Compounds 1-4 have also been studied with electrochemical methods, variable-temperature (2-295 K) magnetic susceptibility measurements, X-band electron paramagnetic resonance (EPR) (2-60 K) spectroscopy, and magnetic circular dichroism (MCD) (5 K) measurements. Electrochemical results suggest metal-centered oxidations to V(V) (i.e., no formation of phenoxyl radicals from the coordinated phenolates). A combination of density functional theory calculations and experimental EPR investigations indicates a dramatic effect of the heteroatoms on the electronic structure of 1-4 with consequent reordering of the energy levels; 1 and 3 possess a trigonal ground state (d(z)()(2))(1), but 4 with the phosphoryl oxygen as the heterodonor atom in contrast exhibits a tetragonal ground state, (d(xy)())(1). On the basis of the intense electronic transitions in absorption spectra, all electronic transitions observed for 4 have been assigned to ligand-to-metal charge-transfer transitions, which have been confirmed by preliminary resonance Raman measurements and C/D ratios obtained from low-temperature MCD spectroscopy. Moreover, diamagnetic complexes 5 and 6 containing mononuclear and dinuclear oxovanadium(V) units have also been synthesized and structurally and spectroscopically ((51)V NMR) characterized.
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Affiliation(s)
- Tapan K Paine
- Max-Planck-Institut für Bioanorganische Chemie, Stiftstrasse 34-36, D-45470 Mülheim an der Ruhr, Germany
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19
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Woodworth J, Bowman MK, Larsen SC. Two-Dimensional Pulsed EPR Studies of Vanadium-Exchanged ZSM-5. J Phys Chem B 2004. [DOI: 10.1021/jp046585r] [Citation(s) in RCA: 20] [Impact Index Per Article: 1.0] [Reference Citation Analysis] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Indexed: 11/28/2022]
Affiliation(s)
- James Woodworth
- Department of Chemistry, University of Iowa, Iowa City, Iowa 52242, and Environmental Molecular Sciences Laboratory, Pacific Northwest National Laboratory, Richland, Washington 99352
| | - Michael K. Bowman
- Department of Chemistry, University of Iowa, Iowa City, Iowa 52242, and Environmental Molecular Sciences Laboratory, Pacific Northwest National Laboratory, Richland, Washington 99352
| | - Sarah C. Larsen
- Department of Chemistry, University of Iowa, Iowa City, Iowa 52242, and Environmental Molecular Sciences Laboratory, Pacific Northwest National Laboratory, Richland, Washington 99352
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20
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Baute D, Arieli D, Neese F, Zimmermann H, Weckhuysen BM, Goldfarb D. Carboxylate Binding in Copper Histidine Complexes in Solution and in Zeolite Y: X- and W-band Pulsed EPR/ENDOR Combined with DFT Calculations. J Am Chem Soc 2004; 126:11733-45. [PMID: 15366921 DOI: 10.1021/ja047761c] [Citation(s) in RCA: 58] [Impact Index Per Article: 2.8] [Reference Citation Analysis] [Abstract] [MESH Headings] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Indexed: 11/28/2022]
Abstract
The complexes of copper with histidine exhibit a wide variety of coordination modes in aqueous solution. This stems from the three potential coordination sites of the histidine molecule and the existence of mono- and bis-complexes. The present work concentrates on the determination of the carboxylate binding mode, via the (13)C hyperfine coupling of the carboxyl, in a number of copper complexes in frozen solutions. These are then used as references for the determination of the coordination mode of two zeolite encapsulated complexes. The (13)C hyperfine coupling (sign and magnitude) was determined by a variety of advanced pulsed EPR and electron-nuclear double resonance (ENDOR) techniques carried out at conventional and high magnetic fields. These showed that while the carboxyl (13)C isotropic hyperfine coupling of an equatorially coordinated carboxylate is negative with a magnitude of 3-4 MHz, that of a free carboxylate is small ( approximately 1 MHz) and positive. To rationalize the experimentally determined ligand hyperfine couplings ((1)H and (13)C) and further understand their dependence on the coordination mode and degree of protonation, density functional theory (DFT) calculations were carried out on a number of model complexes, representing the different Cu-histidine complexes studied experimentally. The exchange-correlation functional used for the calculation of the EPR parameters was B3LYP with triple-zeta plus polarization (TZP) quality basis sets. While the polarization agreement between the magnitudes of the calculated and experimental values varied among the various nuclei, sometimes exhibiting deviations of up to 40%, an excellent agreement was found for the sign prediction. This shows the unique advantage of combining high field ENDOR, by which the sign of the hyperfine can often be determined, with DFT predictions for structure determination.
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Affiliation(s)
- Debbie Baute
- Contribution from the Department of Chemical Physics, The Weizmann Institute of Science, Rehovot, Israel
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21
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Sojka Z, Pietrzyk P. Paramagnetic species on catalytic surfaces--DFT investigations into structure sensitivity of the hyperfine coupling constants. SPECTROCHIMICA ACTA. PART A, MOLECULAR AND BIOMOLECULAR SPECTROSCOPY 2004; 60:1257-1265. [PMID: 15134723 DOI: 10.1016/j.saa.2003.10.043] [Citation(s) in RCA: 3] [Impact Index Per Article: 0.1] [Reference Citation Analysis] [Abstract] [MESH Headings] [Track Full Text] [Subscribe] [Scholar Register] [Received: 07/22/2003] [Accepted: 10/12/2003] [Indexed: 05/24/2023]
Abstract
Structure sensitivity of the hyperfine coupling constants was investigated by means of DFT calculations for selected surface paramagnetic species. A *CH2OH radical trapped on silica and intrazeolite copper nitrosyl adducts encaged in ZSM-5 were taken as the examples. The surface of amorphous silica was modeled with a [Si5O8H10] cluster, whereas the zeolite hosting sites were epitomized by [Si4AlO5(OH)10]- cluster. Three different coordination modes of the *CH2OH radical were considered and the isotropic 13C and 1H hyperfine constants of the resultant van der Waals complexes, calculated with B3LYP/6-311G(d), were discussed in terms of the angular deformations caused by hydrogen bonds with the cluster. The magnetic parameters of the eta1-N[CuNO]11 and eta1-O[CuNO]11 linkage isomers were calculated at the BPW91/LanL2DZ and 6-311G(df) level. For the most stable eta1-N adduct a clear dependence of the spin density distribution within the Cu-NO moiety on changes in the Cu-N-O angle and the Cu-N bond distance was observed and accounted for by varying spin polarization and delocalization contributions.
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Affiliation(s)
- Zbigniew Sojka
- Faculty of Chemistry, Jagiellonian University, Ingardena 3, 30-060 Cracow, Poland.
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22
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Tucker RJ, Fallis IA, Farley RD, Murphy DM, Willock DJ. An ENDOR and DFT analysis of ‘solvatochromic’ effects in an oxovanadium (IV) complex. Chem Phys Lett 2003. [DOI: 10.1016/j.cplett.2003.09.077] [Citation(s) in RCA: 7] [Impact Index Per Article: 0.3] [Reference Citation Analysis] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Indexed: 10/27/2022]
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23
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Saladino AC, Larsen SC. Relativistic DFT Calculations of Copper Hyperfine Coupling Constants: Effect of Spin−Orbit Coupling. J Phys Chem A 2003. [DOI: 10.1021/jp022671k] [Citation(s) in RCA: 13] [Impact Index Per Article: 0.6] [Reference Citation Analysis] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Indexed: 11/28/2022]
Affiliation(s)
| | - Sarah C. Larsen
- Department of Chemistry, University of Iowa, Iowa City, Iowa 52242
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24
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Pietrzyk P, Piskorz W, Sojka Z, Broclawik E. Molecular Structure, Spin Density Distribution, and Hyperfine Coupling Constants of the η{CuNO}11 Adduct in the ZSM-5 Zeolite: DFT Calculations and Comparison with EPR Data. J Phys Chem B 2003. [DOI: 10.1021/jp034173x] [Citation(s) in RCA: 44] [Impact Index Per Article: 2.0] [Reference Citation Analysis] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Indexed: 11/28/2022]
Affiliation(s)
- P. Pietrzyk
- Faculty of Chemistry, Jagiellonian University, Ingardena 3, 30-060 Cracow, Poland
| | - W. Piskorz
- Faculty of Chemistry, Jagiellonian University, Ingardena 3, 30-060 Cracow, Poland
| | - Z. Sojka
- Faculty of Chemistry, Jagiellonian University, Ingardena 3, 30-060 Cracow, Poland
| | - E. Broclawik
- Institute of Catalysis and Surface Chemistry, Polish Academy of Sciences, Niezapominajek 8, 30-239 Cracow, Poland
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Saladino AC, Larsen SC. Density Functional Theory Calculations of Nitrogen Hyperfine and Quadrupole Coupling Constants in Oxovanadium(IV) Complexes. J Phys Chem A 2003. [DOI: 10.1021/jp030051t] [Citation(s) in RCA: 11] [Impact Index Per Article: 0.5] [Reference Citation Analysis] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Indexed: 11/29/2022]
Affiliation(s)
| | - Sarah C. Larsen
- Department of Chemistry, University of Iowa, Iowa City, Iowa 52242
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Saladino AC, Larsen SC. Density Functional Theory Calculations of the Electron Paramagnetic Resonance Parameters for VO2+ Complexes. J Phys Chem A 2003. [DOI: 10.1021/jp022297o] [Citation(s) in RCA: 57] [Impact Index Per Article: 2.6] [Reference Citation Analysis] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Indexed: 11/30/2022]
Affiliation(s)
| | - Sarah C. Larsen
- Department of Chemistry, University of Iowa, Iowa City, Iowa 52242
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27
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Neese F. Quantum chemical calculations of spectroscopic properties of metalloproteins and model compounds: EPR and Mössbauer properties. Curr Opin Chem Biol 2003; 7:125-35. [PMID: 12547437 DOI: 10.1016/s1367-5931(02)00006-6] [Citation(s) in RCA: 116] [Impact Index Per Article: 5.3] [Reference Citation Analysis] [Abstract] [MESH Headings] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Indexed: 11/28/2022]
Abstract
Recently developed theoretical methods to predict EPR and Mössbauer parameters open the way for close interactions between theorists and experimentalists to elucidate the geometric and electronic structures of metalloenzymes and model complexes and to obtain insight into their reactive properties. Spectral calculations (g-values, hyperfine couplings, zero-field splittings, isomer shifts and quadrupole splittings) are also a means to validate theoretical approaches and therefore complement the prediction of geometries, reaction energies and transition states.
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Affiliation(s)
- Frank Neese
- Max-Planck Institut für Strahlenchemie, Stiftstr. 34-36, D-45470 Mülheim an der Ruhr, Germany.
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28
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Johansson MP, Sundholm D, Gerfen G, Wikström M. The spin distribution in low-spin iron porphyrins. J Am Chem Soc 2002; 124:11771-80. [PMID: 12296745 DOI: 10.1021/ja026523j] [Citation(s) in RCA: 53] [Impact Index Per Article: 2.3] [Reference Citation Analysis] [Abstract] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Indexed: 11/29/2022]
Abstract
In many low-spin (S = 1/2) iron porphyrin derivatives, electron spin resonance (ESR) spectra indicate that one of the d(pi) orbitals of iron, either a d(xz) or d(yz), depending on the axial ligands of the porphyrin complex as well as their orientation, is essentially singly occupied; the unpaired electron is almost completely located at the metal. In contrast, nuclear magnetic resonance (NMR) and electron nuclear double resonance (ENDOR) spectroscopy convincingly show that a significant share of the unpaired electron is delocalized. This apparent contradiction is explained by the present density-functional-theory (DFT) calculations performed on a heme a model as well as on bis-imidazole-ligated iron porphyrin without substituents. The calculations show that the integrated spin density at the iron atom is nearly one, in agreement with the ESR measurements. However, significant areas with opposite (beta) spin are found along the Fe-N bond axes, thus evoking a need for additional alpha-spin density to be present in the porphyrin ring, ring substituents, and the axial ligands to keep the net amount of unpaired spin exactly one. The gross spin density, that is, the sum of unpaired alpha and beta spins, amounts to about 1.3 electrons. It seems that the degree to which alpha and beta spin dominate in different regions of the heme structure, as evidenced in these calculations, has not been previously observed.
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Affiliation(s)
- Mikael P Johansson
- Department of Chemistry, P.O. Box 55 FIN-00014, University of Helsinki, Finland.
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Saladino AC, Larsen SC. Computational Study of the Effect of the Imidazole Ring Orientation on the EPR Parameters for Vanadyl−Imidazole Complexes. J Phys Chem A 2002. [DOI: 10.1021/jp0215163] [Citation(s) in RCA: 21] [Impact Index Per Article: 0.9] [Reference Citation Analysis] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Indexed: 11/28/2022]
Affiliation(s)
| | - Sarah C. Larsen
- Department of Chemistry, University of Iowa, Iowa City, Iowa 52242
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30
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Arieli D, Delabie A, Vaughan DEW, Strohmaier KG, Goldfarb D. Isomorphous Substitution of Mn(II) into Aluminophosphate Zeotypes: A Combined High-Field ENDOR and DFT Study. J Phys Chem B 2002. [DOI: 10.1021/jp020502u] [Citation(s) in RCA: 15] [Impact Index Per Article: 0.7] [Reference Citation Analysis] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Indexed: 11/29/2022]
Affiliation(s)
- D. Arieli
- Department of Chemical Physics, Weizmann Institute of Science, Rehovot, Israel, 76100, Department of Chemistry, University of Leuven, Celestijnenlaan 200F, B-3001 Heverlee-Leuven, Belgium, Materials Research Laboratory, Pennsylvania State University, University Park, Pennsylvania 16802, and Exxon Research and Engineering Company, Route 22 East, Annandale, New Jersey 08801
| | - A. Delabie
- Department of Chemical Physics, Weizmann Institute of Science, Rehovot, Israel, 76100, Department of Chemistry, University of Leuven, Celestijnenlaan 200F, B-3001 Heverlee-Leuven, Belgium, Materials Research Laboratory, Pennsylvania State University, University Park, Pennsylvania 16802, and Exxon Research and Engineering Company, Route 22 East, Annandale, New Jersey 08801
| | - D. E. W. Vaughan
- Department of Chemical Physics, Weizmann Institute of Science, Rehovot, Israel, 76100, Department of Chemistry, University of Leuven, Celestijnenlaan 200F, B-3001 Heverlee-Leuven, Belgium, Materials Research Laboratory, Pennsylvania State University, University Park, Pennsylvania 16802, and Exxon Research and Engineering Company, Route 22 East, Annandale, New Jersey 08801
| | - K. G. Strohmaier
- Department of Chemical Physics, Weizmann Institute of Science, Rehovot, Israel, 76100, Department of Chemistry, University of Leuven, Celestijnenlaan 200F, B-3001 Heverlee-Leuven, Belgium, Materials Research Laboratory, Pennsylvania State University, University Park, Pennsylvania 16802, and Exxon Research and Engineering Company, Route 22 East, Annandale, New Jersey 08801
| | - D. Goldfarb
- Department of Chemical Physics, Weizmann Institute of Science, Rehovot, Israel, 76100, Department of Chemistry, University of Leuven, Celestijnenlaan 200F, B-3001 Heverlee-Leuven, Belgium, Materials Research Laboratory, Pennsylvania State University, University Park, Pennsylvania 16802, and Exxon Research and Engineering Company, Route 22 East, Annandale, New Jersey 08801
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31
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Costa Pessoa J, Calhorda MJ, Cavaco I, Correia I, Duarte MT, Felix V, Henriques R, Piedade MFM, Tomaz I. Molecular modelling studies of N-salicylideneamino acidato complexes of oxovanadium(iv). Molecular and crystal structure of a new dinuclear LOVIV–O–VVOL mixed valence complex. ACTA ACUST UNITED AC 2002. [DOI: 10.1039/b205843j] [Citation(s) in RCA: 68] [Impact Index Per Article: 3.0] [Reference Citation Analysis] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Indexed: 11/21/2022]
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32
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Murphy DM, Fallis IA, Farley RD, Tucker RJ, Avery KL, Willock DJ. Conformational changes of an oxovanadium complex probed by ENDOR spectroscopy and DFT calculations. Phys Chem Chem Phys 2002. [DOI: 10.1039/b204564h] [Citation(s) in RCA: 13] [Impact Index Per Article: 0.6] [Reference Citation Analysis] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Indexed: 11/21/2022]
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