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For: Richardson NA, Wesolowski SS, Schaefer HF. The Adenine−Thymine Base Pair Radical Anion:  Adding an Electron Results in a Major Structural Change. J Phys Chem B 2002. [DOI: 10.1021/jp022111l] [Citation(s) in RCA: 101] [Impact Index Per Article: 4.6] [Reference Citation Analysis] [What about the content of this article? (0)] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Indexed: 11/29/2022]
Number Cited by Other Article(s)
1
Narayanan S J J, Bachhar A, Tripathi D, Dutta AK. Electron Attachment to Wobble Base Pairs. J Phys Chem A 2023;127:457-467. [PMID: 36622294 DOI: 10.1021/acs.jpca.2c07469] [Citation(s) in RCA: 0] [Impact Index Per Article: 0] [Reference Citation Analysis] [Abstract] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Indexed: 01/10/2023]
2
Banerjee S, Sokolov AY. Efficient implementation of the single-reference algebraic diagrammatic construction theory for charged excitations: Applications to the TEMPO radical and DNA base pairs. J Chem Phys 2021;154:074105. [PMID: 33607870 DOI: 10.1063/5.0040317] [Citation(s) in RCA: 12] [Impact Index Per Article: 4.0] [Reference Citation Analysis] [Abstract] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Indexed: 12/16/2022]  Open
3
Crystallographic evidence of Watson-Crick connectivity in the base pair of anionic adenine with thymine. Proc Natl Acad Sci U S A 2020;117:18224-18230. [PMID: 32680959 PMCID: PMC7414232 DOI: 10.1073/pnas.2008379117] [Citation(s) in RCA: 5] [Impact Index Per Article: 1.3] [Reference Citation Analysis] [Abstract] [Key Words] [Track Full Text] [Download PDF] [Figures] [Journal Information] [Subscribe] [Scholar Register] [Indexed: 11/18/2022]  Open
4
Tripathi D, Dutta AK. Electron Attachment to DNA Base Pairs: An Interplay of Dipole- and Valence-Bound States. J Phys Chem A 2019;123:10131-10138. [DOI: 10.1021/acs.jpca.9b08974] [Citation(s) in RCA: 14] [Impact Index Per Article: 2.8] [Reference Citation Analysis] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Indexed: 01/29/2023]
5
Storoniak P, Rak J, Ko YJ, Wang H, Bowen KH. Excess Electron Attachment to the Nucleoside Pair 2′-Deoxyadenosine (dA)–2′-Deoxythymidine (dT). J Phys Chem B 2016;120:4955-62. [DOI: 10.1021/acs.jpcb.6b03450] [Citation(s) in RCA: 4] [Impact Index Per Article: 0.5] [Reference Citation Analysis] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Indexed: 11/29/2022]
6
Li M, Diao L, Liao X, Kou L, Lu W. DFT study on addition reaction mechanism of guanine-cytosine base pair with OH radical. J PHYS ORG CHEM 2015. [DOI: 10.1002/poc.3434] [Citation(s) in RCA: 7] [Impact Index Per Article: 0.8] [Reference Citation Analysis] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Indexed: 01/13/2023]
7
Intriguing radical–radical interactions among double-electron oxidized adenine–thymine base pairs. Chem Phys Lett 2015. [DOI: 10.1016/j.cplett.2014.11.027] [Citation(s) in RCA: 6] [Impact Index Per Article: 0.7] [Reference Citation Analysis] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Indexed: 11/20/2022]
8
Gu J, Wang J, Leszczynski J. Photoinduced Electron Detachment and Proton Transfer: The Proposal for Alternative Path of Formation of Triplet States of Guanine (G) and Cytosine (C) Pair. J Phys Chem B 2014;119:2454-8. [DOI: 10.1021/jp507385r] [Citation(s) in RCA: 5] [Impact Index Per Article: 0.5] [Reference Citation Analysis] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Indexed: 02/04/2023]
9
Dutta AK, Gupta J, Pathak H, Vaval N, Pal S. Partitioned EOMEA-MBPT(2): An Efficient N5 Scaling Method for Calculation of Electron Affinities. J Chem Theory Comput 2014;10:1923-33. [DOI: 10.1021/ct4009409] [Citation(s) in RCA: 28] [Impact Index Per Article: 2.8] [Reference Citation Analysis] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Indexed: 11/29/2022]
10
Gryn’ova G, Coote ML. Origin and Scope of Long-Range Stabilizing Interactions and Associated SOMO–HOMO Conversion in Distonic Radical Anions. J Am Chem Soc 2013;135:15392-403. [DOI: 10.1021/ja404279f] [Citation(s) in RCA: 91] [Impact Index Per Article: 8.3] [Reference Citation Analysis] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Indexed: 02/07/2023]
11
Wu Y, Wang H, Lin Y, Gao S, Zhang F. Hydrogen-bonded proton transfer in the hydrated adenine–thymine anion. CAN J CHEM 2013. [DOI: 10.1139/cjc-2013-0162] [Citation(s) in RCA: 1] [Impact Index Per Article: 0.1] [Reference Citation Analysis] [Abstract] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Indexed: 11/22/2022]
12
Zhao J, Wang M, Yang H, Zhang M, Liu P, Bu Y. Radical–Radical Interactions among Oxidized Guanine Bases Including Guanine Radical Cation and Dehydrogenated Guanine Radicals. J Phys Chem B 2013;117:10698-710. [DOI: 10.1021/jp4042149] [Citation(s) in RCA: 6] [Impact Index Per Article: 0.5] [Reference Citation Analysis] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Indexed: 11/30/2022]
13
Storoniak P, Rak J, Ko YJ, Wang H, Bowen KH. Photoelectron spectroscopic and density functional theoretical studies of the 2′-deoxycytidine homodimer radical anion. J Chem Phys 2013;139:075101. [DOI: 10.1063/1.4817779] [Citation(s) in RCA: 5] [Impact Index Per Article: 0.5] [Reference Citation Analysis] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Indexed: 11/14/2022]  Open
14
Jissy AK, Konar S, Datta A. Molecular Switching Behavior in Isosteric DNA Base Pairs. Chemphyschem 2013;14:1219-26. [DOI: 10.1002/cphc.201201083] [Citation(s) in RCA: 12] [Impact Index Per Article: 1.1] [Reference Citation Analysis] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Received: 12/24/2012] [Indexed: 12/22/2022]
15
Ko YJ, Storoniak P, Wang H, Bowen KH, Rak J. Photoelectron spectroscopy and density functional theory studies on the uridine homodimer radical anions. J Chem Phys 2012. [PMID: 23206036 DOI: 10.1063/1.4767053] [Citation(s) in RCA: 4] [Impact Index Per Article: 0.3] [Reference Citation Analysis] [Abstract] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Indexed: 12/17/2022]  Open
16
Storoniak P, Rak J, Ko YJ, Wang H, Bowen KH. Photoelectron Spectroscopy and Computational Modeling of Thymidine Homodimer Anions. J Phys Chem B 2012;116:13975-81. [DOI: 10.1021/jp307570p] [Citation(s) in RCA: 3] [Impact Index Per Article: 0.3] [Reference Citation Analysis] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Indexed: 01/28/2023]
17
Gu J, Leszczynski J, Schaefer HF. Interactions of electrons with bare and hydrated biomolecules: from nucleic acid bases to DNA segments. Chem Rev 2012;112:5603-40. [PMID: 22694487 DOI: 10.1021/cr3000219] [Citation(s) in RCA: 158] [Impact Index Per Article: 13.2] [Reference Citation Analysis] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Indexed: 12/11/2022]
18
Gupta A, Jaeger HM, Compaan KR, Schaefer HF. Electron attachment to the guanine-cytosine nucleic acid base pair and the effects of monohydration and proton transfer. J Phys Chem B 2012;116:5579-87. [PMID: 22530702 DOI: 10.1021/jp211608b] [Citation(s) in RCA: 19] [Impact Index Per Article: 1.6] [Reference Citation Analysis] [Abstract] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Indexed: 02/08/2023]
19
Gu J, Liang G, Xie Y, Schaefer HF. Electron attachment to solvated dGpdG: effects of stacking on base-centered and phosphate-centered valence-bound radical anions. Chemistry 2012;18:5232-8. [PMID: 22431283 DOI: 10.1002/chem.201103850] [Citation(s) in RCA: 7] [Impact Index Per Article: 0.6] [Reference Citation Analysis] [Abstract] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Received: 12/07/2011] [Revised: 01/30/2012] [Indexed: 11/06/2022]
20
Cheng Q, Gu J, Compaan KR, Schaefer HF. Isoguanine formation from adenine. Chemistry 2012;18:4877-86. [PMID: 22411110 DOI: 10.1002/chem.201102415] [Citation(s) in RCA: 11] [Impact Index Per Article: 0.9] [Reference Citation Analysis] [Abstract] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Received: 08/03/2011] [Indexed: 11/06/2022]
21
Gu J, Wang J, Leszczynski J. Electron Attachment to the Cytosine-Centered DNA Single Strands: Does Base Stacking Matter? J Phys Chem B 2012;116:1458-66. [DOI: 10.1021/jp211386x] [Citation(s) in RCA: 10] [Impact Index Per Article: 0.8] [Reference Citation Analysis] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Indexed: 01/29/2023]
22
Peng B, McNew SR, Li QS, Xie Y, Schaefer HF. Remarkable hydrogen bonding in the radical anions of guanine–cytosine and adenine–thymine. Chem Phys Lett 2012. [DOI: 10.1016/j.cplett.2011.12.003] [Citation(s) in RCA: 2] [Impact Index Per Article: 0.2] [Reference Citation Analysis] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Indexed: 11/29/2022]
23
Ivanova B, Spiteller M. Conformation, optical properties, and absolute configuration of 2′,3′-isopropylideneadenosines: Theoretical vs. experimental study. J Mol Struct 2011. [DOI: 10.1016/j.molstruc.2011.08.027] [Citation(s) in RCA: 11] [Impact Index Per Article: 0.8] [Reference Citation Analysis] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Indexed: 10/17/2022]
24
Jena NR, Bansal M. Mutagenicity associated with O6-methylguanine-DNA damage and mechanism of nucleotide flipping by AGT during repair. Phys Biol 2011;8:046007. [PMID: 21666294 DOI: 10.1088/1478-3975/8/4/046007] [Citation(s) in RCA: 15] [Impact Index Per Article: 1.2] [Reference Citation Analysis] [Abstract] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Indexed: 11/11/2022]
25
Li X, Chen J, Bowen KH. Photoelectron spectroscopic study of the negative ions of 4-thiouracil and 2,4-dithiouracil. J Chem Phys 2011;134:074304. [DOI: 10.1063/1.3555177] [Citation(s) in RCA: 5] [Impact Index Per Article: 0.4] [Reference Citation Analysis] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Indexed: 11/14/2022]  Open
26
Gu J, Wong NB, Xie Y, Schaefer FH. Electron attachment to a hydrated DNA duplex: the dinucleoside phosphate deoxyguanylyl-3',5'-deoxycytidine. Chemistry 2011;16:13155-62. [PMID: 20922718 DOI: 10.1002/chem.201001306] [Citation(s) in RCA: 13] [Impact Index Per Article: 1.0] [Reference Citation Analysis] [Abstract] [MESH Headings] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Indexed: 02/04/2023]
27
Kim S, Schaefer HF. Vertical detachment energies of anionic thymidine: Microhydration effects. J Chem Phys 2010;133:144305. [DOI: 10.1063/1.3488105] [Citation(s) in RCA: 11] [Impact Index Per Article: 0.8] [Reference Citation Analysis] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Indexed: 11/14/2022]  Open
28
Cheng Q, Gu J, Compaan KR, Schaefer HF. Hydroxyl Radical Reactions with Adenine: Reactant Complexes, Transition States, and Product Complexes. Chemistry 2010;16:11848-58. [DOI: 10.1002/chem.201001236] [Citation(s) in RCA: 36] [Impact Index Per Article: 2.6] [Reference Citation Analysis] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Indexed: 12/27/2022]
29
Ko YJ, Wang H, Radisic D, Stokes ST, Eustis SN, Bowen KH, Mazurkiewicz K, Storoniak P, Kowalczyk A, Haranczyk M, Gutowski M, Rak J. Barrier-free proton transfer induced by electron attachment to the complexes between 1‐methylcytosine and formic acid. Mol Phys 2010. [DOI: 10.1080/00268976.2010.515623] [Citation(s) in RCA: 3] [Impact Index Per Article: 0.2] [Reference Citation Analysis] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Indexed: 10/19/2022]
30
Storoniak P, Mazurkiewicz K, Haranczyk M, Gutowski M, Rak J, Eustis SN, Ko YJ, Wang H, Bowen KH. The Anionic (9-Methyladenine)−(1-Methylthymine) Base Pair Solvated by Formic Acid. A Computational and Photoelectron Spectroscopy Study. J Phys Chem B 2010;114:11353-62. [DOI: 10.1021/jp104668h] [Citation(s) in RCA: 8] [Impact Index Per Article: 0.6] [Reference Citation Analysis] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Indexed: 01/30/2023]
31
Gu J, Xie Y, Schaefer HF. Electron attachment to hydrated oligonucleotide dimers: guanylyl-3',5'-cytidine and cytidylyl-3',5'-guanosine. Chemistry 2010;16:5089-96. [PMID: 20349466 DOI: 10.1002/chem.200902977] [Citation(s) in RCA: 14] [Impact Index Per Article: 1.0] [Reference Citation Analysis] [Abstract] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Indexed: 11/07/2022]
32
Kobyłecka M, Leszczynski J, Rak J. Stability of the valence anion of cytosine is governed by nucleobases sequence in the double stranded DNA pi-stack: A computational study. J Chem Phys 2009;131:085103. [PMID: 19725636 DOI: 10.1063/1.3204939] [Citation(s) in RCA: 11] [Impact Index Per Article: 0.7] [Reference Citation Analysis] [Abstract] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Indexed: 11/14/2022]  Open
33
Sevilla MD. Comment on "Excited states of DNA base pairs using long-range corrected time-dependent density functional theory". J Phys Chem A 2009;113:11093-4; discussion 11095. [PMID: 19764792 PMCID: PMC4679139 DOI: 10.1021/jp908098a] [Citation(s) in RCA: 3] [Impact Index Per Article: 0.2] [Reference Citation Analysis] [MESH Headings] [Grants] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Indexed: 10/20/2022]
34
Voityuk AA. Stabilization of radical anion states of nucleobases in DNA. Phys Chem Chem Phys 2009;11:10608-13. [PMID: 20145805 DOI: 10.1039/b910690a] [Citation(s) in RCA: 10] [Impact Index Per Article: 0.7] [Reference Citation Analysis] [Abstract] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Indexed: 11/21/2022]
35
Mishra D, Pal S. Ionization potential and structure relaxation of adenine, thymine, guanine and cytosine bases and their base pairs: A quantification of reactive sites. ACTA ACUST UNITED AC 2009. [DOI: 10.1016/j.theochem.2009.02.018] [Citation(s) in RCA: 20] [Impact Index Per Article: 1.3] [Reference Citation Analysis] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Indexed: 11/16/2022]
36
Gu J, Xie Y, Schaefer HF. Electron attachment to oligonucleotide dimers in water: Microsolvation-assisted base-stacking forms. Chem Phys Lett 2009. [DOI: 10.1016/j.cplett.2009.03.032] [Citation(s) in RCA: 10] [Impact Index Per Article: 0.7] [Reference Citation Analysis] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Indexed: 10/21/2022]
37
Duncan Lyngdoh RH, Schaefer HF. Elementary lesions in DNA subunits: electron, hydrogen atom, proton, and hydride transfers. Acc Chem Res 2009;42:563-72. [PMID: 19231845 DOI: 10.1021/ar800077q] [Citation(s) in RCA: 53] [Impact Index Per Article: 3.5] [Reference Citation Analysis] [Abstract] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Indexed: 02/06/2023]
38
Szyperska A, Rak J, Leszczynski J, Li X, Ko YJ, Wang H, Bowen KH. Valence Anions of 9-Methylguanine−1-Methylcytosine Complexes. Computational and Photoelectron Spectroscopy Studies. J Am Chem Soc 2009;131:2663-9. [DOI: 10.1021/ja808313e] [Citation(s) in RCA: 31] [Impact Index Per Article: 2.1] [Reference Citation Analysis] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Indexed: 01/27/2023]
39
Roca-Sanjuán D, Merchán M, Serrano-Andrés L, Rubio M. Ab initio determination of the electron affinities of DNA and RNA nucleobases. J Chem Phys 2009;129:095104. [PMID: 19044892 DOI: 10.1063/1.2958286] [Citation(s) in RCA: 80] [Impact Index Per Article: 5.3] [Reference Citation Analysis] [Abstract] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Indexed: 11/14/2022]  Open
40
Puiatti M, Vera DMA, Pierini AB. In search for an optimal methodology to calculate the valence electron affinities of temporary anions. Phys Chem Chem Phys 2009;11:9013-24. [DOI: 10.1039/b908870a] [Citation(s) in RCA: 26] [Impact Index Per Article: 1.7] [Reference Citation Analysis] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Indexed: 12/22/2022]
41
Wyer JA, Cederquist H, Haag N, Huber BA, Hvelplund P, Johansson HAB, Maisonny R, Brøndsted Nielsen S, Rangama J, Rousseau P, Schmidt HT. On the hydrogen loss from protonated nucleobases after electronic excitation or collisional electron capture. EUROPEAN JOURNAL OF MASS SPECTROMETRY (CHICHESTER, ENGLAND) 2009;15:681-688. [PMID: 19940334 DOI: 10.1255/ejms.1039] [Citation(s) in RCA: 2] [Impact Index Per Article: 0.1] [Reference Citation Analysis] [Abstract] [Track Full Text] [Subscribe] [Scholar Register] [Indexed: 05/28/2023]
42
Seal P, Jha PC, Ågren H, Chakrabarti S. Magnetic interactions in dehydrogenated Guanine–Cytosine base pair. Chem Phys Lett 2008. [DOI: 10.1016/j.cplett.2008.09.069] [Citation(s) in RCA: 6] [Impact Index Per Article: 0.4] [Reference Citation Analysis] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Indexed: 10/21/2022]
43
Kobyłecka M, Leszczynski J, Rak J. Valence anion of thymine in the DNA pi-stack. J Am Chem Soc 2008;130:15683-7. [PMID: 18954049 DOI: 10.1021/ja806251h] [Citation(s) in RCA: 26] [Impact Index Per Article: 1.6] [Reference Citation Analysis] [Abstract] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Indexed: 01/23/2023]
44
Sarmah P, Deka RC. Density functional studies on the electron affinities of DNA and RNA bases. MOLECULAR SIMULATION 2008. [DOI: 10.1080/08927020802235664] [Citation(s) in RCA: 10] [Impact Index Per Article: 0.6] [Reference Citation Analysis] [Track Full Text] [Subscribe] [Scholar Register] [Indexed: 10/21/2022]
45
Yamagami R, Kobayashi K, Tagawa S. Formation of spectral intermediate G-C and A-T anion complex in duplex DNA studied by pulse radiolysis. J Am Chem Soc 2008;130:14772-7. [PMID: 18841971 DOI: 10.1021/ja805127e] [Citation(s) in RCA: 29] [Impact Index Per Article: 1.8] [Reference Citation Analysis] [Abstract] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Indexed: 11/29/2022]
46
Félix M, Voityuk AA. Parameters For Excess Electron Transfer in DNA. Estimation Using Unoccupied Kohn−Sham Orbitals and TD DFT. J Phys Chem A 2008;112:9043-9. [DOI: 10.1021/jp803636x] [Citation(s) in RCA: 20] [Impact Index Per Article: 1.3] [Reference Citation Analysis] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Indexed: 01/20/2023]
47
Zhang JD, Chen Z, Schaefer HF. Electron attachment to the hydrogenated Watson-Crick guanine cytosine base pair (GC+H): conventional and proton-transferred structures. J Phys Chem A 2008;112:6217-26. [PMID: 18557604 DOI: 10.1021/jp711958p] [Citation(s) in RCA: 18] [Impact Index Per Article: 1.1] [Reference Citation Analysis] [Abstract] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Indexed: 01/28/2023]
48
Cho M. Coherent two-dimensional optical spectroscopy. Chem Rev 2008;108:1331-418. [PMID: 18363410 DOI: 10.1021/cr078377b] [Citation(s) in RCA: 530] [Impact Index Per Article: 33.1] [Reference Citation Analysis] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Indexed: 11/29/2022]
49
Puiatti M, Vera DMA, Pierini AB. Species with negative electron affinity and standard DFT methods. Finding the valence anions. Phys Chem Chem Phys 2008;10:1394-9. [PMID: 18309394 DOI: 10.1039/b716625g] [Citation(s) in RCA: 21] [Impact Index Per Article: 1.3] [Reference Citation Analysis] [Abstract] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Indexed: 11/21/2022]
50
Radiation Effects On DNA: Theoretical Investigations Of Electron, Hole And Excitation Pathways To DNA Damage. ACTA ACUST UNITED AC 2008. [DOI: 10.1007/978-1-4020-8184-2_20] [Citation(s) in RCA: 7] [Impact Index Per Article: 0.4] [Reference Citation Analysis] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Indexed: 03/12/2023]
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