Influence of Inorganic Salts and Bases on the J-Band in the Absorption Spectra of Water Solutions of 1,1‘-Diethyl-2,2‘-cyanine Iodide

Analyte-dependent Rabi splitting in solid-state plexcitonic sensors based on plasmonic nanoislands strongly coupled to J-aggregates

A key challenge in the field of plexcitonic quantum devices is the fabrication of solid-state, device-friendly plexcitonic nanostructures using inexpensive and scalable techniques. Lithography-free, bottom-up nanofabrication methods have remained relatively unexplored within the context of plexcitonic coupling. In this work, a plexcitonic system consisting of thermally dewetted plasmonic gold nanoislands (AuNI) coated with a thin film of J-aggregates was investigated. Control over nanoisland size and morphology allowed for a range of plasmon resonances with variable detuning from the exciton. The extinction spectra of the hybrid AuNI/J-aggregate films display clear splitting into upper and lower hybrid resonances, while the dispersion curve shows anti-crossing behavior with an estimated Rabi splitting of 180 eV at zero detuning. As a proof of concept for quantum sensing, the AuNI/J-aggregate hybrid was demonstrated to behave as a plexcitonic sensor for hydrochloric acid vapor analyte. This work highlights the possibility of using thermally dewetted nanoparticles as a platform for high-quality, tunable, cost-effective, and scalable plexcitonic nanostructures for sensing devices and beyond.

Solution-based Supramolecular Hierarchical Assembly of Frenkel Excitonic Nanotubes Driven by Gold Nanoparticle Formation and Temperature

Translating nature's successful design principle of solution-based supramolecular self-assembling to broad applications─ranging from renewable energy and information technology to nanomedicine─requires a fundamental understanding of supramolecular hierarchical assembly. Though the forces behind self-assembly (e.g., hydrophobicity) are known, the specific mechanism by which monomers form the hierarchical assembly still remains an open question. A crucial step toward formulating a complete mechanism is understanding not only how the monomer's specific molecular structure but also how manifold environmental conditions impact the self-assembling process. Here, we elucidate the complex correlation between the environmental self-assembling conditions and the resulting structural properties by utilizing a well-characterized model system: well-defined supramolecular Frenkel excitonic nanotubes (NTs), self-assembled from cyanine dye molecules in aqueous solution, which further self-assemble into bundled nanotubes (b-NTs). The NTs and b-NTs inhabit distinct spectroscopic signatures, which allows the use of steady-state absorption spectroscopy to monitor the transition from NTs to b-NTs directly. Specifically, we investigate the impact of temperature (ranging from 23 °C, 55 °C, 70 °C, 85 °C, up to 100 °C) during in situ formation of gold nanoparticles to determine their role in the formation of b-NTs. The considered time regime for the self-assembling process ranges from 1 min to 8 days. With our work, we contribute to a basic understanding of how environmental conditions impact solution-based hierarchical supramolecular self-assembly in both the thermodynamic and the kinetic regime.

J-Aggregates Formed by NaCl Treatment of Aza-Coating Heptamethine Cyanines and Their Application to Monitoring Salt Stress of Plants and Promoting Photothermal Therapy of Tumors

The cationic nature of heptamethine cyanines gives them the capacity to form aggregates with salts by electrostatic interactions. In this work, NaCl promoted J-aggregate formation of aza-coating heptamethine cyanines is explored. NaCl can induce the N-benzyloxycarbonyl Cy-CO₂ Bz to assemble into a J-aggregate having an absorption at 890 nm. Its excellent fluorescence response to NaCl implies that it has great potential for use as a probe for tracing salt stress in plants. Moreover, NaCl also promotes formation of J-aggregates from the N-ethyloxycarbonyl Cy-CO₂ Et. The aggregate shows an intense absorption at 910 nm compared to the monomer which absorbs at 766 nm. Its J-aggregated form can serve as a photothermal agent. And the photothermal conversion efficiency is increased from 29.37 % to 57.59 %. This effort leads to the development of two applications of new cyanine J-aggregates including one for tracing salt stress of plants and the other for promoting photothermal therapy of tumors.

Revealing the evolving mixture of molecular aggregates during organic film formation using simulations of in situ absorbance

In this work, we introduce a method for modeling the evolving absorbance spectrum of an organic molecule, pseudoisocyanine (PIC), measured during the process of molecular aggregation. Despite being historically considered a J-aggregate, we find that the absorbance spectrum of PIC cannot be adequately modeled using solely J-aggregates either during molecular aggregation or in the final dry film. The collection of absorbance spectra during solution-casting is particularly difficult since a distribution of aggregates with various sizes and structures can coexist. Here, spectra measured during film formation are fit to a weighted sum of simulated spectra of two aggregate species, revealing the combinations of Coulombic coupling values, Huang-Rhys parameters, and aggregate sizes that provide good fits to measured spectra. The peak intensity ratios and relative peak positions are highly sensitive to the aggregate structure, and fitting only these features enables the rapid comparison of aggregate combinations. We find that the spectra of PIC aggregates cannot be modeled using the Huang-Rhys factor of the PIC monomer, as is typically assumed, leading us to consider models that utilize independent Huang-Rhys factors for each aggregate species. This method of fitting only the key spectral features allows an experimental spectrum to be modeled within 1 h-2 h when using a single Huang-Rhys factor, making the simulation of a series of in situ measurements during aggregation computationally feasible.

Probing the role of oscillator strength and charge of exciton forming molecular J-aggregates in controlling nanoscale plasmon-exciton interactions

In this study, we probe into the roles of exciton oscillator strength and charge of J-aggregates as well as nanoparticle's surface capping ligands in dictating the plasmon-exciton interaction. We systematically compare the plasmon-exciton coupling strengths of two hybrid plexcitonic systems involving CTAB-capped hollow gold nanoprisms (HGNs) and two different cyanine dyes, TDBC and PIC, having very similar J-band spectral positions and linewidths, but different oscillator strengths and opposite charges. Both HGN-PIC and HGN-TDBC systems display large Rabi splitting energies which are found to be extremely dependent on dye-concentrations. Interestingly, for our plexciton systems we find that there is interplay between the exciton oscillator strength and the electrostatic interaction amid dyes and HGN-surfaces in dictating the coupling strength. The oscillator strength dominates at low dye-concentrations resulting in larger Rabi splitting in the HGN-PIC system while at high concentrations, a favorable electrostatic interaction between TDBC and CTAB-capped HGN results in larger exciton population of the HGN-surface and in turn larger Rabi splitting for the HGN-TDBC system than the HGN-PIC system even though TDBC has a lower oscillator strength than PIC. The trend in Rabi splitting is just reversed when the HGN surface is modified with a negatively charged polymer, confirming the role of electrostatic interactions in influencing the plasmon-exciton coupling strength.

Effects of Concentration on Aggregation of BODIPY-Based Fluorescent Dyes Solution

Despite significant progress in understanding of dye aggregation, there are still processes that need to be further explored and which can significantly affect aggregation. In this work it was shown that the aggregation of dyes is influenced not only by dye concentration, but also by solvent polarity. It was found that nature, positions and number of fluorescent peaks may be controlled by simultaneous varying of both water fraction and dye concentration. This effect is most pronounced for molecular rotors, which aggregates' geometry may be stabilized in different separate states depending on the aggregation degree. The concentration effect plays a significant role in dye aggregation and should be considered in new studies in order to prevent misinterpretation or to obtain new results in fields of molecular sensing or fine-tuning of fluorescence color. In this paper aggregation caused spectral changes are discussed in line with the dye structure preorganization as the strategy for the fine tuning of practically valuable spectral characteristics.

Structural templating of J-aggregates: Visualizing bis(monoacylglycero)phosphate domains in live cells

Identifying the key structural and dynamical determinants that drive the association of biomolecules, whether in solution, or perhaps more importantly in a membrane environment, has critical implications for our understanding of cellular dynamics, processes, and signaling. With recent advances in high-resolution imaging techniques, from the development of new molecular labels to technical advances in imaging methodologies and platforms, researchers are now reaping the benefits of being able to directly characterize and quantify local dynamics, structures, and conformations in live cells and tissues. These capabilities are providing unique insights into association stoichiometries, interactions, and structures on sub-micron length scales. We previously examined the role of lipid headgroup chemistry and phase state in guiding the formation of pseudoisocyanine (PIC) dye J-aggregates on supported planar bilayers [Langmuir, 25, 10719]. We describe here how these same J-aggregates can report on the in situ formation of organellar membrane domains in live cells. Live cell hyperspectral confocal microscopy using GFP-conjugated GTPase markers of early (Rab5) and late (Rab7) endosomes revealed that the PIC J-aggregates were confined to domains on either the limiting membrane or intralumenal vesicles (ILV) of late endosomes, known to be enriched in the anionic lipid bis(monoacylglycero)phosphate (BMP). Correlated confocal fluorescence - atomic force microscopy performed on endosomal membrane-mimetic supported planar lipid bilayers confirmed BMP-specific templating of the PIC J-aggregates. These data provide strong evidence for the formation of BMP-rich lipid domains during multivesicular body formation and portend the application of structured dye aggregates as markers of cellular membrane domain structure, size, and formation.

Exploring the coherent interaction in a hybrid system of hollow gold nanoprisms and cyanine dye J-aggregates: role of plasmon-hybridization mediated local electric-field enhancement

In this work, we probed the possibility of observing strong plasmon–exciton interactions in hollow gold nanoprism–J-aggregate nanocomposites.

Forcing aggregation of cyanine dyes with salts: a fine line between dimers and higher ordered aggregates

It is uncommon to read about cyanine dyes in the literature and not have their aggregation discussed. They are of high interest considering their propensity to undergo self-organization in aqueous solution, leading to interesting photophysical properties resulting from the formation of their dimers and higher ordered aggregates. Currently, the study of their aggregation is in high demand due to their diverse application range including dye-sensitized solar cells. However, their aggregation in high salt solutions is under studied, and the effect on aggregation in congruence with high ionic strength is often overlooked. In a previous study, our group established the role of specific ion effects and in particular the necessity of matching water affinity to induce aggregation of a cationic cyanine dye, thiazole orange. In order to advance the understanding of this topic, we present in this article the diverse aggregation of cyanine dyes, as a single monovalent salt can cause different aggregation responses in a variety of these dyes. We established via absorption spectroscopy combined with chemometric analyses that the inherent monomer-dimer equilibrium of a dye depends on its geometry. More interestingly, experimental data coupled with DFT calculations reveal that not only the geometry of a dye but also its charge location plays a role in the aggregate morphology formed by the interaction of a cationic cyanine dye and an anion. It is thought that contact ion pair formation and effective charge screening generated within that ion pair are responsible for aggregates with a greater order.

Supramolecular structure of TTBC J-aggregates in solution and on surface

The aggregation behavior of cationic 5,5',6,6'-tetrachloro-1,1',3,3'-tetraethylbenzimidacarbocyanine with chloride (TTBC-Cl) or iodide counterions (TTBC-I) in aqueous solution is investigated by absorption, linear dichroism, and fluorescence spectroscopies, as well as cryogenic transmission electron microscopy (cryo-TEM) and atomic force microscopy (AFM). TTBC-Cl is found to form J-aggregates with a classical Davydov-split absorption band (type I spectrum) even under different preparation conditions. These aggregates remain stable for months. Unlike the chloride salt, the iodide salt TTBC-I forms two different types of J-aggregates depending on the pH of the aqueous solution. The TTBC-I aggregates prepared in pure water (pH = 6) are characterized by a single redshifted absorption band (type III spectrum), whereas those prepared in alkaline solution at pH = 13 show a typical Davydov-split (type I) absorption band. Despite differences in counterions, preparation method, stability, and spectroscopic behavior, cryo-TEM reveals an identical tubular architecture for all these J-aggregates. Among the new structure models discussed here is a cylindrical brickwork layer of dye molecules for single-banded J-aggregates (type III). For Davydov-split aggregates (type I), a molecular herringbone-like pattern is proposed instead. Moreover, absorption spectra have revealed an additional single redshifted absorption band (type II spectrum) that is assigned to a surface aggregate and is induced by a specific interaction of the dye cation with the negatively charged cuvette wall. AFM measurements of analogous preparations on negatively charged mica surfaces have supported this interpretation and revealed the formation of monolayered sheet structures.

Control of H- and J-aggregate formation via host-guest complexation using cucurbituril hosts

The binding interactions between two cyanine dyes, pseudoisocyanine (PIC) and pinacyanol (PIN), and the cucurbit[n]uril hosts, cucurbit[7]uril (CB7) and cucurbit[6]uril (CB6), were investigated by electronic absorption spectroscopy and DFT computational methods. The CB7 host forms more stable complexes with both dyes than CB6 and the computational studies suggest that the cavity of the smaller host CB6 is not threaded by the dyes. The equilibrium association constants (K) for complexation by CB7 were measured and found to be 2.05 x 10(4) and 3.84 x 10(5) M(-1) for PIC and PIN, respectively, in aqueous media at 23 degrees C. CB7 complexation was found to effectively disrupt the intermolecular forces responsible for the aggregation of both dyes. Thus, CB7 completely disrupts the J-aggregates formed by PIC and the H-aggregates (as well as lower concentrations of J-aggregates) formed by PIN. In both cases a competing guest, 1-aminoadamantane (AD), could be used to adjust the extent of aggregation of the cyanine dye. AD regulates aggregate formation because it forms an extremely stable complex with CB7 (K approximately = 10(12) M(-1)) and exerts a tight control on the CB7 concentration available to interact and bind with the dye.

Kinetics of salt-induced J-aggregation of cyanine dyes

The addition of monovalent, divalent, and trivalent metal ions to three anionic ethyl meso-thiacarbocyanine dyes, an ethyl meso-oxacarbocyanine, and an imidacarbocyanine in aqueous solution at room temperature results in the production of J-aggregates within the range of tens to hundreds of seconds. The rate of formation of J-aggregates correlates with the rate of decay of dimers or monomers and is dependent on the type of metal ion, dye structure, and temperature. The rate of formation of J-aggregates increases as the temperature decreases and the dye and salt concentrations increase, and the rate is highest for trivalent ions and smallest for monovalent ions, independent of the type of anion. The time course of formation of J-aggregates is described in most cases by a sigmoidal curve, and the kinetics and mechanism are discussed within the framework of autocatalysis. Computer simulations reveal that the sigmoidal time dependence is transferred to an exponential-like curve by substantially increasing the rate constant for the noncatalytic step. The reaction pathway into J-aggregates can be switched from dimeric ion pairs as the reactant to monomeric ion pairs, when the rate constant for the catalytic step via the monomer becomes larger with respect to that via the dimer.

Time-Dependent Photoluminescence Blue Shift of the Quantum Dots in Living Cells: Effect of Oxidation by Singlet Oxygen

Time-dependent photoluminescence (PL) enhancement, blue shift, and photobleach were observed from the thiol-capped CdTe quantum dots (QDs) ingested in mouse myoblast cells and human primary liver cancer cells. It was revealed that the PL blue shift resulted from the photooxidation of the QD core by singlet oxygen molecules formed on the QD core surface.

Two-Photon Fluorescence Spectroscopy of Individually Trapped Pseudoisocyanine J-Aggregates in Aqueous Solution

We have investigated a pseudoisocyanine dye aqueous solution including nanometer-sized J-aggregates by combining optical trapping and two-photon fluorescence spectroscopy. By focusing an intense near-infrared laser into an 8 x 10(-3) M solution, the intense fluorescence from J-aggregates for a few to tens of seconds is observed intermittently, indicating that individual J-aggregates are trapped in and diffuse out from a focal spot. The peak position and full width at half-maximum of the J-band are different from each other. By measuring 171 J-aggregates, it was found that J-aggregates can be classified largely into two groups. The existence of two kinds of groups of J-aggregates could be attributed to the difference in the nucleation process, which is affected by the substrate. J-aggregates possessing a J-band of a narrower bandwidth in a shorter wavelength region are trapped for a longer period of time, indicating that highly ordered J-aggregates are trapped for a longer period of time because of their high polarizability.

Controlled Formation of the Two-Dimensional TTBC J-Aggregates in an Aqueous Solution

Strong experimental and theoretical evidence was provided on the controlled formation of the two-dimensional J-aggregates that were assembled in the herringbone morphology. The exciton-band structure formation of 1,1',3,3'-tetraethyl-5,5',6,6'-tetrachlorobenzimidazolocarbocyanine (TTBC) J-aggregates was investigated in ionic (NaOH) aqueous solution at room temperature. The control was achieved by changing the [TTBC] at a given [NaOH], or vice versa, and was monitored through the changes in the absorption, fluorescence excitation, and emission spectra. Specific attention was paid to expose the excited-state structure and dynamics through simulations of the excitonic properties, which included diagonal energetic disorder and phonon-assisted exciton relaxation. Aggregates were characterized by an asymmetrically split Davydov pair, an H-band (approximately 500 nm, 1300 cm(-1) wide, Lorentzian-like) and a J-band (approximately 590 nm, 235 cm(-1) wide, with a band shape typical of a one-dimensional J-aggregate), whose relative intensities showed a strong dependence on the [TTBC]/[NaOH]. The H-band is favored by high [TTBC] or high [NaOH]. An explanation of the control on the aggregate formation was given by correlating the changes in the absorption with the structural modifications and the subsequent changes in the dynamics, which were induced by variations in the dye and NaOH concentrations. The J-band shape/width was attributed to disorder and disorder-induced intraband phonon-assisted exciton relaxation. The intraband processes in both bands were estimated to occur in the same time scale (about a picosecond). It has been suggested that the wide energetic gap between the Davydov split bands (3000 cm(-1)) could get bridged by the excitonic states of the loosely coupled chains, in addition to the monomeric species at low [TTBC]. Phonon-assisted interband relaxation, through the band gap states and/or directly from the H- to the J-band, are suggested for accounting the difference between the bandwidths and shapes of the two bands. Energy transfer between the H-band and the monomeric species is suggested as crucial for tuning the relative strengths of the two bands.

Kinetics of J-Aggregation of Cyanine Dyes in the Presence of Gelatin

The kinetics of formation of J-aggregates for 3,3'-bis[sulfopropyl]-R-4',5'-dibenzo-9-ethylthiacarbocyanines (R=5-methoxy; R=4,5-dibenzo) and 3,3'-bis[sulfopropyl]-5,5'-diphenyl-9-ethyloxacarbocyanine were studied in aqueous solution in the presence of gelatin at different pH values and at room and elevated temperatures. Addition of gelatin at concentrations of 0.0005-0.05 wt % to solutions of dyes results in the production of J-aggregates in the tens of seconds to tens of minutes range. The rate of J-aggregate formation increases with increasing concentrations of dye and gelatin, correlates with the rate of decay of dimers, and is also dependent on the dye structure, temperature, and pH. The rate of J-aggregation is increased for and decreased for with an increase in temperature. For and, the rate increases with increasing [H+] and reaches the maximum value at pH 3.3-4.3 for 3. The interaction of with gelatin is considered to be a cooperative binding process, and J-aggregation is characterized by the time-dependent rate constant. Sigmoidal- and nonsigmoidal-type kinetic curves of both formation of J-aggregates and decay of the dimers are best fitted with a stretched exponential function.