1
|
Finney JM, McCoy AB. Correlations between the Structures and Spectra of Protonated Water Clusters. J Phys Chem A 2024; 128:868-879. [PMID: 38265889 DOI: 10.1021/acs.jpca.3c07338] [Citation(s) in RCA: 0] [Impact Index Per Article: 0] [Reference Citation Analysis] [Abstract] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Indexed: 01/26/2024]
Abstract
Badger's rule-like correlations between OH stretching frequencies and intensities and the OH bond length are used to develop a spectral mapping procedure for studies of pure and protonated water clusters. This approach utilizes the vibrationally averaged OH bond lengths, which were obtained from diffusion Monte Carlo simulations that were performed using the general potential developed by Yu and Bowman. Good agreement is achieved between the spectra obtained using this approach and previously reported spectra for H+(H2O)n clusters, with n = 3, 4, and 5, as well as their perdeuterated analogues. The analysis of the spectra obtained by this spectral mapping approach supports previous work that assigned the spectrum of H+(H2O)6 to a mixture of Eigen and Zundel-like structures. Analysis of the calculated spectra also suggests a reassignment of the frequency of one of the transitions that involves the OH stretching vibration of the OH bonds in the hydronium core in the Eigen-like structure of H+(H2O)6 from 1917 cm-1 to roughly 2100 cm-1. For D+(D2O)6, comparison of the measured spectrum to those obtained by using the spectral mapping approach suggests that the carrier of the measured spectrum is one or more of the isomers of D+(D2O)6 that contain a four-membered ring and two flanking water molecules. While there are several candidate structures, the two flanking water molecules most likely form a chain that is bound to the hydronium core.
Collapse
Affiliation(s)
- Jacob M Finney
- Department of Chemistry, University of Washington, Seattle, Washington 98195, United States
| | - Anne B McCoy
- Department of Chemistry, University of Washington, Seattle, Washington 98195, United States
| |
Collapse
|
2
|
Feng B, Sanov A. Microsolvation of Hot Ions: Spectroscopy and Statistical Mechanics of Phenide-Water Interactions. J Phys Chem A 2023; 127:6437-6446. [PMID: 37498135 DOI: 10.1021/acs.jpca.3c02737] [Citation(s) in RCA: 0] [Impact Index Per Article: 0] [Reference Citation Analysis] [Abstract] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Indexed: 07/28/2023]
Abstract
Thermal excitation alters the spectroscopic signatures of solvated ions and affects their interactions with neighboring molecules. By analyzing the photoelectron spectra of microhydrated phenide (Ph-), the temperatures of the Ph-·H2O and Ph-·(H2O)2 clusters from a hot ion source were determined to be 560 and 520 K, respectively, vs 700 K for unsolvated Ph-. Compared to theory predictions for cold clusters, the high temperature of the environment significantly reduces the average hydration stabilization of the ions and the corresponding band shifts in their spectra. The results are discussed in terms of a statistical model that describes the energy content of the intermolecular (IM) degrees of freedom of the cluster, ⟨EIM⟩. We show that over the entire solvation energy range, the density of states associated with the IM modes of Ph-·H2O, of which there are only 6, is more than an order of magnitude greater than that associated with the 27 internal vibrations of the core anion. The results suggest that the observed cluster temperatures are not determined by the ion source but represent the intrinsic properties of the clusters. The energetics and statistical mechanics of microsolvation limit the excitation that the IM degrees of freedom can sustain without significant solvent evaporation on the timescale of the experiment. The limit is expressed as a characteristic solvation temperature (CST), which is the maximum canonical temperature of a stable cluster ensemble. Driven by evaporative cooling, the terminal cluster temperature from a hot ion source will always be close to the cluster's CST. Only if the source temperature is lower than CST will the observed cluster temperature be determined by the source conditions. An approximate rule is proposed for estimating the characteristic temperature of any cluster using the inflection point on the ⟨EIM⟩ vs T curve.
Collapse
Affiliation(s)
- Beverly Feng
- Department of Chemistry and Biochemistry, The University of Arizona, Tucson, Arizona 85721, United States
| | - Andrei Sanov
- Department of Chemistry and Biochemistry, The University of Arizona, Tucson, Arizona 85721, United States
| |
Collapse
|
3
|
Barbiero D, Bertaina G, Ceotto M, Conte R. Anharmonic Assignment of the Water Octamer Spectrum in the OH Stretch Region. J Phys Chem A 2023; 127:6213-6221. [PMID: 37477983 PMCID: PMC10405218 DOI: 10.1021/acs.jpca.3c02902] [Citation(s) in RCA: 0] [Impact Index Per Article: 0] [Reference Citation Analysis] [Abstract] [Grants] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Received: 05/03/2023] [Revised: 07/03/2023] [Indexed: 07/23/2023]
Abstract
We interface the quasi-classical trajectory approach with an ab initio potential energy surface for water to assign the vibrational spectroscopical features of the OH stretch region of the water octamer cluster, which is considered to be a precursor of ice. An attempt by Li et al. to assign their recent reference experiment involved lower-level calculations based on an ad hoc scaled harmonic approach. Differently from the conclusions of this previous assignment, which invoked the contribution of 5 conformers and a solvated form of the water heptamer in the spectrum, we find out that the spectroscopic features can be related to the 4 conformers of the octamer lying lower in energy.
Collapse
Affiliation(s)
- Davide Barbiero
- Dipartimento
di Chimica, Università degli Studi
di Milano, via Golgi 19, 20133 Milano, Italy
| | - Gianluca Bertaina
- Istituto
Nazionale di Ricerca Metrologica, Strada delle Cacce 91, I-10135 Torino, Italy
| | - Michele Ceotto
- Dipartimento
di Chimica, Università degli Studi
di Milano, via Golgi 19, 20133 Milano, Italy
| | - Riccardo Conte
- Dipartimento
di Chimica, Università degli Studi
di Milano, via Golgi 19, 20133 Milano, Italy
| |
Collapse
|
4
|
Bowman JM, Qu C, Conte R, Nandi A, Houston PL, Yu Q. Δ-Machine Learned Potential Energy Surfaces and Force Fields. J Chem Theory Comput 2023; 19:1-17. [PMID: 36527383 DOI: 10.1021/acs.jctc.2c01034] [Citation(s) in RCA: 25] [Impact Index Per Article: 25.0] [Reference Citation Analysis] [Abstract] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Indexed: 12/23/2022]
Abstract
There has been great progress in developing machine-learned potential energy surfaces (PESs) for molecules and clusters with more than 10 atoms. Unfortunately, this number of atoms generally limits the level of electronic structure theory to less than the "gold standard" CCSD(T) level. Indeed, for the well-known MD17 dataset for molecules with 9-20 atoms, all of the energies and forces were obtained with DFT calculations (PBE). This Perspective is focused on a Δ-machine learning method that we recently proposed and applied to bring DFT-based PESs to close to CCSD(T) accuracy. This is demonstrated for hydronium, N-methylacetamide, acetyl acetone, and ethanol. For 15-atom tropolone, it appears that special approaches (e.g., molecular tailoring, local CCSD(T)) are needed to obtain the CCSD(T) energies. A new aspect of this approach is the extension of Δ-machine learning to force fields. The approach is based on many-body corrections to polarizable force field potentials. This is examined in detail using the TTM2.1 water potential. The corrections make use of our recent CCSD(T) datasets for 2-b, 3-b, and 4-b interactions for water. These datasets were used to develop a new fully ab initio potential for water, termed q-AQUA.
Collapse
Affiliation(s)
- Joel M Bowman
- Department of Chemistry and Cherry L. Emerson Center for Scientific Computation, Emory University, Atlanta, Georgia 30322, United States
| | - Chen Qu
- Independent Researcher, Toronto, Canada 66777
| | - Riccardo Conte
- Dipartimento di Chimica, Università Degli Studi di Milano, via Golgi 19, 20133 Milano, Italy
| | - Apurba Nandi
- Department of Chemistry and Cherry L. Emerson Center for Scientific Computation, Emory University, Atlanta, Georgia 30322, United States
| | - Paul L Houston
- Department of Chemistry and Chemical Biology, Cornell University, Ithaca, New York 14853, United States.,Department of Chemistry and Biochemistry, Georgia Institute of Technology, Atlanta, Georgia 30332, United States
| | - Qi Yu
- Department of Chemistry, Yale University, New Haven, Connecticut 06520, United States
| |
Collapse
|
5
|
Verma A, Bhuvanesh N, Reibenspies J, Saha S, Sunkari SS. Confocal Raman microscopic evidence for cyclic water Pentamer, at high temperatures in a supramolecular host of [Cu(cyclam)(N 3) 2]·4H 2O. SPECTROCHIMICA ACTA. PART A, MOLECULAR AND BIOMOLECULAR SPECTROSCOPY 2022; 274:121121. [PMID: 35299094 DOI: 10.1016/j.saa.2022.121121] [Citation(s) in RCA: 0] [Impact Index Per Article: 0] [Reference Citation Analysis] [Abstract] [Key Words] [Track Full Text] [Subscribe] [Scholar Register] [Received: 12/11/2021] [Revised: 03/03/2022] [Accepted: 03/06/2022] [Indexed: 06/14/2023]
Abstract
Here, we report the existence of a pentameric water cluster in the host framework of [Cu(cyclam)(N3)2]·4H2O, that is stable upto 167 °C, well above the boiling point of water. The pentameric cluster structure embedded in the host framework is evident from the single crystal studies. The high thermal stability is confirmed by TGA and temperature dependent confocal Raman microscopic studies, where loss of water bands is well captured between 167 and 170 °C, besides its existence through SCXRD studies. To the best of our knowledge, this is the first report where temperature dependent confocal Raman microscopic investigation is used to study the stability of water in crystal environment. The study promises that temperature dependent confocal Raman microscopy can be an efficient tool to investigate the existence and stability of small water clusters, precisely in restricted environments.
Collapse
Affiliation(s)
- Abhineet Verma
- Department of Chemistry, Mahila Maha Vidyalaya, Banaras Hindu University, Varanasi 221005, India; Department of Chemistry, Institute of Science, Banaras Hindu University, Varanasi 221005, India
| | - Nattamai Bhuvanesh
- X-ray Diffraction Laboratory, Department of Chemistry, Texas A & M University, USA
| | - Joseph Reibenspies
- X-ray Diffraction Laboratory, Department of Chemistry, Texas A & M University, USA
| | - Satyen Saha
- Department of Chemistry, Institute of Science, Banaras Hindu University, Varanasi 221005, India
| | - Sailaja S Sunkari
- Department of Chemistry, Mahila Maha Vidyalaya, Banaras Hindu University, Varanasi 221005, India
| |
Collapse
|
6
|
Mirdha RH, Naskar P, Chaudhury P. Structural transformation in $$(\hbox {MgO})_{{{n}}}$$ clusters using a gradient-only strategy and its comparison with a full Hessian-based calculation. INDIAN JOURNAL OF PHYSICS 2021; 95:561-570. [DOI: 10.1007/s12648-020-01724-4] [Citation(s) in RCA: 0] [Impact Index Per Article: 0] [Reference Citation Analysis] [Track Full Text] [Subscribe] [Scholar Register] [Received: 05/10/2019] [Accepted: 11/25/2019] [Indexed: 07/19/2023]
|
7
|
Li G, Wang C, Zheng HJ, Wang TT, Xie H, Yang XM, Jiang L. Infrared spectroscopy of neutral clusters based on a vacuum ultraviolet free electron laser. CHINESE J CHEM PHYS 2021. [DOI: 10.1063/1674-0068/cjcp2101018] [Citation(s) in RCA: 2] [Impact Index Per Article: 0.7] [Reference Citation Analysis] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Indexed: 11/14/2022]
Affiliation(s)
- Gang Li
- State Key Laboratory of Molecular Reaction Dynamics, Collaborative Innovation Center of Chemistry for Energy and Materials, Dalian Institute of Chemical Physics, Chinese Academy of Sciences, Dalian 116023, China
| | - Chong Wang
- State Key Laboratory of Molecular Reaction Dynamics, Collaborative Innovation Center of Chemistry for Energy and Materials, Dalian Institute of Chemical Physics, Chinese Academy of Sciences, Dalian 116023, China
- University of Chinese Academy of Sciences, Beijing 100049, China
| | - Hui-jun Zheng
- State Key Laboratory of Molecular Reaction Dynamics, Collaborative Innovation Center of Chemistry for Energy and Materials, Dalian Institute of Chemical Physics, Chinese Academy of Sciences, Dalian 116023, China
- University of Chinese Academy of Sciences, Beijing 100049, China
| | - Tian-tong Wang
- State Key Laboratory of Molecular Reaction Dynamics, Collaborative Innovation Center of Chemistry for Energy and Materials, Dalian Institute of Chemical Physics, Chinese Academy of Sciences, Dalian 116023, China
- University of Chinese Academy of Sciences, Beijing 100049, China
| | - Hua Xie
- State Key Laboratory of Molecular Reaction Dynamics, Collaborative Innovation Center of Chemistry for Energy and Materials, Dalian Institute of Chemical Physics, Chinese Academy of Sciences, Dalian 116023, China
| | - Xue-ming Yang
- State Key Laboratory of Molecular Reaction Dynamics, Collaborative Innovation Center of Chemistry for Energy and Materials, Dalian Institute of Chemical Physics, Chinese Academy of Sciences, Dalian 116023, China
- Department of Chemistry, School of Science, Southern University of Science and Technology, Shenzhen 518055, China
| | - Ling Jiang
- State Key Laboratory of Molecular Reaction Dynamics, Collaborative Innovation Center of Chemistry for Energy and Materials, Dalian Institute of Chemical Physics, Chinese Academy of Sciences, Dalian 116023, China
| |
Collapse
|
8
|
Infrared spectroscopic study of hydrogen bonding topologies in the smallest ice cube. Nat Commun 2020; 11:5449. [PMID: 33116144 PMCID: PMC7595032 DOI: 10.1038/s41467-020-19226-6] [Citation(s) in RCA: 14] [Impact Index Per Article: 3.5] [Reference Citation Analysis] [Abstract] [Track Full Text] [Download PDF] [Figures] [Journal Information] [Subscribe] [Scholar Register] [Received: 08/04/2020] [Accepted: 09/21/2020] [Indexed: 12/03/2022] Open
Abstract
The water octamer with its cubic structure consisting of six four-membered rings presents an excellent cluster system for unraveling the cooperative interactions driven by subtle changes in the hydrogen-bonding topology. Despite prediction of many distinct structures, it has not been possible to extract the structural information encoded in their vibrational spectra because this requires size-selectivity of the neutral clusters with sufficient resolution to identify the contributions of the different isomeric forms. Here we report the size-specific infrared spectra of the isolated cold, neutral water octamer using a scheme based on threshold photoionization using a tunable vacuum ultraviolet free electron laser. A plethora of sharp vibrational bands features are observed. Theoretical analysis of these patterns reveals the coexistence of five cubic isomers, including two with chirality. The relative energies of these structures are found to reflect topology-dependent, delocalized multi-center hydrogen-bonding interactions. These results demonstrate that even with a common structural motif, the degree of cooperativity among the hydrogen-bonding network creates a hierarchy of distinct species. The implications of these results on possible metastable forms of ice are speculated. Spectroscopic studies of water clusters provide insight into the hydrogen bond structure of water and ice. The authors measure infrared spectra of neutral water octamers using a threshold photoionization technique based on a tunable vacuum-UV free electron laser, identifying two cubic isomers in addition to those previously observed.
Collapse
|
9
|
Samala N, Agmon N. Temperature and Nuclear Quantum Effects on the Stretching Modes of the Water Hexamer. J Phys Chem A 2020; 124:8201-8208. [PMID: 32870682 PMCID: PMC7586398 DOI: 10.1021/acs.jpca.0c05557] [Citation(s) in RCA: 0] [Impact Index Per Article: 0] [Reference Citation Analysis] [Abstract] [Track Full Text] [Download PDF] [Figures] [Journal Information] [Subscribe] [Scholar Register] [Received: 06/18/2020] [Revised: 09/01/2020] [Indexed: 11/30/2022]
Abstract
The water hexamer has many low-lying isomers, e.g., ring, book, cage, and prism, shifting from two- to three-dimensional structures. We show that this dimensionality change is accompanied by a drop in the quantum nature of the cluster, as manifested in the red shift of the quantal OH stretching modes as compared with their classical counterparts. We obtain this "nuclear quantum effect" (NQE) as the mean deviation between the OH stretch frequencies from velocity autocorrelation Fourier transforms from classical trajectories on a high-level water potential (MB-pol) as compared with scaled harmonic frequencies from high-level quantum chemistry calculations. With a universal scaling factor, the predicted OH frequencies agree with experiment to a mean absolute deviation ≤10 cm-1, which allows unequivocal isomer assignments. By assuming temperature-independent NQEs, we produce the temperature dependence of the cage isomer OH stretch spectrum below 70 K, where it is the dominant structure. All bands widen and blue-shift with increasing temperature, most conspicuously the reddest mode, which thus constitutes a "vibrational thermometer".
Collapse
Affiliation(s)
- Nagaprasad
Reddy Samala
- The Fritz Haber Research
Center, Institute of Chemistry, The Hebrew
University of Jerusalem, Jerusalem 9190401, Israel
| | - Noam Agmon
- The Fritz Haber Research
Center, Institute of Chemistry, The Hebrew
University of Jerusalem, Jerusalem 9190401, Israel
| |
Collapse
|
10
|
Lee VGM, Vetterli NJ, Boyer MA, McCoy AB. Diffusion Monte Carlo Studies on the Detection of Structural Changes in the Water Hexamer upon Isotopic Substitution. J Phys Chem A 2020; 124:6903-6912. [DOI: 10.1021/acs.jpca.0c05686] [Citation(s) in RCA: 6] [Impact Index Per Article: 1.5] [Reference Citation Analysis] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Indexed: 11/30/2022]
Affiliation(s)
- Victor G. M. Lee
- Department of Chemistry, University of Washington, Seattle, Washington 98195, United States
| | - Nicholas J. Vetterli
- Department of Chemistry, University of Washington, Seattle, Washington 98195, United States
| | - Mark A. Boyer
- Department of Chemistry, University of Washington, Seattle, Washington 98195, United States
| | - Anne B. McCoy
- Department of Chemistry, University of Washington, Seattle, Washington 98195, United States
| |
Collapse
|
11
|
Infrared spectroscopy of neutral water clusters at finite temperature: Evidence for a noncyclic pentamer. Proc Natl Acad Sci U S A 2020; 117:15423-15428. [PMID: 32541029 DOI: 10.1073/pnas.2000601117] [Citation(s) in RCA: 38] [Impact Index Per Article: 9.5] [Reference Citation Analysis] [Abstract] [Key Words] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Indexed: 12/18/2022] Open
Abstract
Infrared spectroscopic study of neutral water clusters is crucial to understanding of the hydrogen-bonding networks in liquid water and ice. Here we report infrared spectra of size-selected neutral water clusters, (H2O) n (n = 3-6), in the OH stretching vibration region, based on threshold photoionization using a tunable vacuum ultraviolet free-electron laser. Distinct OH stretch vibrational fundamentals observed in the 3,500-3,600-cm-1 region of (H2O)5 provide unique spectral signatures for the formation of a noncyclic pentamer, which coexists with the global-minimum cyclic structure previously identified in the gas phase. The main features of infrared spectra of the pentamer and hexamer, (H2O) n (n = 5 and 6), span the entire OH stretching band of liquid water, suggesting that they start to exhibit the richness and diversity of hydrogen-bonding networks in bulk water.
Collapse
|
12
|
Zhang B, Yu Y, Zhang Z, Zhang YY, Jiang S, Li Q, Yang S, Hu HS, Zhang W, Dai D, Wu G, Li J, Zhang DH, Yang X, Jiang L. Infrared Spectroscopy of Neutral Water Dimer Based on a Tunable Vacuum Ultraviolet Free Electron Laser. J Phys Chem Lett 2020; 11:851-855. [PMID: 31944117 DOI: 10.1021/acs.jpclett.9b03683] [Citation(s) in RCA: 40] [Impact Index Per Article: 10.0] [Reference Citation Analysis] [Abstract] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Indexed: 06/10/2023]
Abstract
Infrared (IR) spectroscopy provides detailed structural and dynamical information on clusters at the fingerprint level. Herein, we demonstrate the capability of a tunable vacuum ultraviolet free electron laser (VUV-FEL) for selective detection of a wide variety of neutral water clusters and for recording the size-dependent IR spectra. The present technique does not require the presence of an ultraviolet chromophore or a dipole moment and is generally applicable for IR spectroscopy of neutral clusters free from confinement. To show the features of our technique, we report here the IR spectra of neutral water dimer in the OH stretch region, providing benchmarks for theoretical study of the accurate description of hydrogen bonding structures involved in liquid water and ice. Quantum mechanical calculations on a 12-dimensional ab initio potential energy surface are utilized to simulate the anharmonic vibrational spectra of water dimer. These results help to resolve the controversy of the exact vibrational assignment of each band feature of the water dimer.
Collapse
Affiliation(s)
- Bingbing Zhang
- State Key Laboratory of Molecular Reaction Dynamics, Collaborative Innovation Center of Chemistry for Energy and Materials , Dalian Institute of Chemical Physics , Chinese Academy of Sciences, 457 Zhongshan Road , Dalian 116023 , China
| | - Yong Yu
- State Key Laboratory of Molecular Reaction Dynamics, Collaborative Innovation Center of Chemistry for Energy and Materials , Dalian Institute of Chemical Physics , Chinese Academy of Sciences, 457 Zhongshan Road , Dalian 116023 , China
- University of Chinese Academy of Sciences , 19A Yuquan Road , Beijing 100049 , China
| | - Zhaojun Zhang
- State Key Laboratory of Molecular Reaction Dynamics, Collaborative Innovation Center of Chemistry for Energy and Materials , Dalian Institute of Chemical Physics , Chinese Academy of Sciences, 457 Zhongshan Road , Dalian 116023 , China
| | - Yang-Yang Zhang
- Key Laboratory of Organic Optoelectronics & Molecular Engineering of the Ministry of Education, Department of Chemistry , Tsinghua University , Beijing 100084 , China
| | - Shukang Jiang
- State Key Laboratory of Molecular Reaction Dynamics, Collaborative Innovation Center of Chemistry for Energy and Materials , Dalian Institute of Chemical Physics , Chinese Academy of Sciences, 457 Zhongshan Road , Dalian 116023 , China
- University of Chinese Academy of Sciences , 19A Yuquan Road , Beijing 100049 , China
| | - Qinming Li
- State Key Laboratory of Molecular Reaction Dynamics, Collaborative Innovation Center of Chemistry for Energy and Materials , Dalian Institute of Chemical Physics , Chinese Academy of Sciences, 457 Zhongshan Road , Dalian 116023 , China
- University of Chinese Academy of Sciences , 19A Yuquan Road , Beijing 100049 , China
| | - Shuo Yang
- State Key Laboratory of Molecular Reaction Dynamics, Collaborative Innovation Center of Chemistry for Energy and Materials , Dalian Institute of Chemical Physics , Chinese Academy of Sciences, 457 Zhongshan Road , Dalian 116023 , China
- University of Chinese Academy of Sciences , 19A Yuquan Road , Beijing 100049 , China
| | - Han-Shi Hu
- Key Laboratory of Organic Optoelectronics & Molecular Engineering of the Ministry of Education, Department of Chemistry , Tsinghua University , Beijing 100084 , China
| | - Weiqing Zhang
- State Key Laboratory of Molecular Reaction Dynamics, Collaborative Innovation Center of Chemistry for Energy and Materials , Dalian Institute of Chemical Physics , Chinese Academy of Sciences, 457 Zhongshan Road , Dalian 116023 , China
| | - Dongxu Dai
- State Key Laboratory of Molecular Reaction Dynamics, Collaborative Innovation Center of Chemistry for Energy and Materials , Dalian Institute of Chemical Physics , Chinese Academy of Sciences, 457 Zhongshan Road , Dalian 116023 , China
| | - Guorong Wu
- State Key Laboratory of Molecular Reaction Dynamics, Collaborative Innovation Center of Chemistry for Energy and Materials , Dalian Institute of Chemical Physics , Chinese Academy of Sciences, 457 Zhongshan Road , Dalian 116023 , China
| | - Jun Li
- Key Laboratory of Organic Optoelectronics & Molecular Engineering of the Ministry of Education, Department of Chemistry , Tsinghua University , Beijing 100084 , China
- Department of Chemistry, School of Science , Southern University of Science and Technology , Shenzhen 518055 , China
| | - Dong H Zhang
- State Key Laboratory of Molecular Reaction Dynamics, Collaborative Innovation Center of Chemistry for Energy and Materials , Dalian Institute of Chemical Physics , Chinese Academy of Sciences, 457 Zhongshan Road , Dalian 116023 , China
| | - Xueming Yang
- State Key Laboratory of Molecular Reaction Dynamics, Collaborative Innovation Center of Chemistry for Energy and Materials , Dalian Institute of Chemical Physics , Chinese Academy of Sciences, 457 Zhongshan Road , Dalian 116023 , China
- Department of Chemistry, School of Science , Southern University of Science and Technology , Shenzhen 518055 , China
| | - Ling Jiang
- State Key Laboratory of Molecular Reaction Dynamics, Collaborative Innovation Center of Chemistry for Energy and Materials , Dalian Institute of Chemical Physics , Chinese Academy of Sciences, 457 Zhongshan Road , Dalian 116023 , China
| |
Collapse
|
13
|
Vargas J, Ufondu P, Baruah T, Yamamoto Y, Jackson KA, Zope RR. Importance of self-interaction-error removal in density functional calculations on water cluster anions. Phys Chem Chem Phys 2020; 22:3789-3799. [DOI: 10.1039/c9cp06106a] [Citation(s) in RCA: 23] [Impact Index Per Article: 5.8] [Reference Citation Analysis] [Abstract] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Indexed: 12/30/2022]
Abstract
Removing self-interaction errors in density functional approximations results in significantly improved vertical detachment energies of water anions and is essential for obtaining orbital energies consistent with electron binding energies.
Collapse
Affiliation(s)
- Jorge Vargas
- Department of Physics
- The University of Texas at El Paso
- El Paso
- USA
| | - Peter Ufondu
- Department of Physics
- The University of Texas at El Paso
- El Paso
- USA
| | - Tunna Baruah
- Department of Physics
- The University of Texas at El Paso
- El Paso
- USA
- Computational Science Program
| | - Yoh Yamamoto
- Department of Physics
- The University of Texas at El Paso
- El Paso
- USA
| | - Koblar A. Jackson
- Physics Department and Science of Advanced Materials Program
- Central Michigan University
- USA
| | - Rajendra R. Zope
- Department of Physics
- The University of Texas at El Paso
- El Paso
- USA
- Computational Science Program
| |
Collapse
|
14
|
Kananenka AA, Skinner JL. Fermi resonance in OH-stretch vibrational spectroscopy of liquid water and the water hexamer. J Chem Phys 2018; 148:244107. [DOI: 10.1063/1.5037113] [Citation(s) in RCA: 40] [Impact Index Per Article: 6.7] [Reference Citation Analysis] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Indexed: 11/15/2022] Open
Affiliation(s)
- Alexei A. Kananenka
- Institute for Molecular Engineering, The University of Chicago, Chicago, Illinois 60637, USA
| | - J. L. Skinner
- Institute for Molecular Engineering, The University of Chicago, Chicago, Illinois 60637, USA
| |
Collapse
|
15
|
Ghorai S, Chaudhury P. Predicting stability limits for pure and doped dicationic noble gas clusters undergoing coulomb explosion: A parallel tempering based study. J Comput Chem 2018; 39:827-838. [PMID: 29282763 DOI: 10.1002/jcc.25156] [Citation(s) in RCA: 7] [Impact Index Per Article: 1.2] [Reference Citation Analysis] [Abstract] [Key Words] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Received: 07/10/2017] [Revised: 12/07/2017] [Accepted: 12/12/2017] [Indexed: 11/10/2022]
Abstract
We have used a replica exchange Monte-Carlo procedure, popularly known as Parallel Tempering, to study the problem of Coulomb explosion in homogeneous Ar and Xe dicationic clusters as well as mixed Ar-Xe dicationic clusters of varying sizes with different degrees of relative composition. All the clusters studied have two units of positive charges. The simulations reveal that in all the cases there is a cutoff size below which the clusters fragment. It is seen that for the case of pure Ar, the value is around 95 while that for Xe it is 55. For the mixed clusters with increasing Xe content, the cutoff limit for suppression of Coulomb explosion gradually decreases from 95 for a pure Ar to 55 for a pure Xe cluster. The hallmark of this study is this smooth progression. All the clusters are simulated using the reliable potential energy surface developed by Gay and Berne (Gay and Berne, Phys. Rev. Lett. 1982, 49, 194). For the hetero clusters, we have also discussed two different ways of charge distribution, that is one in which both positive charges are on two Xe atoms and the other where the two charges are at a Xe atom and at an Ar atom. The fragmentation patterns observed by us are such that single ionic ejections are the favored dissociating pattern. © 2017 Wiley Periodicals, Inc.
Collapse
Affiliation(s)
- Sankar Ghorai
- Department of Chemistry, University of Calcutta, 92 A P C Road, Kolkata, 700 009, India
| | - Pinaki Chaudhury
- Department of Chemistry, University of Calcutta, 92 A P C Road, Kolkata, 700 009, India
| |
Collapse
|
16
|
Brown SE, Götz AW, Cheng X, Steele RP, Mandelshtam VA, Paesani F. Monitoring Water Clusters “Melt” Through Vibrational Spectroscopy. J Am Chem Soc 2017; 139:7082-7088. [DOI: 10.1021/jacs.7b03143] [Citation(s) in RCA: 55] [Impact Index Per Article: 7.9] [Reference Citation Analysis] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Indexed: 12/30/2022]
Affiliation(s)
| | | | - Xiaolu Cheng
- Department
of Chemistry and Henry Eyring Center for Theoretical Chemistry, University of Utah, Salt Lake City, Utah 84112, United States
| | - Ryan P. Steele
- Department
of Chemistry and Henry Eyring Center for Theoretical Chemistry, University of Utah, Salt Lake City, Utah 84112, United States
| | | | | |
Collapse
|
17
|
Affiliation(s)
- John M. Herbert
- Department of Chemistry and Biochemistry, The Ohio State University, Columbus, Ohio 43210
| | - Marc P. Coons
- Department of Chemistry and Biochemistry, The Ohio State University, Columbus, Ohio 43210
| |
Collapse
|
18
|
Pradzynski CC, Dierking CW, Zurheide F, Forck RM, Buck U, Zeuch T, Xantheas SS. Infrared detection of (H2O)20 isomers of exceptional stability: a drop-like and a face-sharing pentagonal prism cluster. Phys Chem Chem Phys 2015; 16:26691-6. [PMID: 25231162 DOI: 10.1039/c4cp03642e] [Citation(s) in RCA: 25] [Impact Index Per Article: 2.8] [Reference Citation Analysis] [Abstract] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Indexed: 11/21/2022]
Abstract
Water clusters with internally solvated water molecules are widespread models that mimic the local environment of the condensed phase. The appearance of stable (H2O)n cluster isomers having a fully coordinated interior molecule has been theoretically predicted to occur around the n = 20 size range. However, our current knowledge about the size regime in which those structures become energetically more stable has remained hypothetical from simulations in lieu of the absence of precisely size-resolved experimental measurements. Here we report size and isomer selective infrared (IR) spectra of (H2O)20 clusters tagged with a sodium atom by employing IR excitation modulated photoionization spectroscopy. The observed absorption patterns in the OH stretching region are consistent with the theoretically predicted spectra of two structurally distinct isomers of exceptional stability: a drop-like cluster with a fully coordinated (interior) water molecule and an edge-sharing pentagonal prism cluster in which all atoms are on the surface. The drop-like structure is the first experimentally detected water cluster exhibiting the local connectivity found in liquid water.
Collapse
Affiliation(s)
- Christoph C Pradzynski
- Institut für Physikalische Chemie, Universität Göttingen, Tammannstr. 6, 37077 Göttingen, Germany.
| | | | | | | | | | | | | |
Collapse
|
19
|
Tabor DP, Kusaka R, Walsh PS, Zwier TS, Sibert EL. Local Mode Approach to OH Stretch Spectra of Benzene–(H2O)n Clusters, n = 2–7. J Phys Chem A 2015; 119:9917-30. [PMID: 26340135 DOI: 10.1021/acs.jpca.5b06954] [Citation(s) in RCA: 26] [Impact Index Per Article: 2.9] [Reference Citation Analysis] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Indexed: 11/28/2022]
Affiliation(s)
- Daniel P. Tabor
- Department
of Chemistry and Theoretical Chemistry Institute, University of Wisconsin—Madison, Madison, Wisconsin 53706, United States
| | - Ryoji Kusaka
- Department
of Chemistry, Purdue University, West Lafayette, Indiana 47907, United States
| | - Patrick S. Walsh
- Department
of Chemistry, Purdue University, West Lafayette, Indiana 47907, United States
| | - Timothy S. Zwier
- Department
of Chemistry, Purdue University, West Lafayette, Indiana 47907, United States
| | - Edwin L. Sibert
- Department
of Chemistry and Theoretical Chemistry Institute, University of Wisconsin—Madison, Madison, Wisconsin 53706, United States
| |
Collapse
|
20
|
Tabor DP, Kusaka R, Walsh PS, Sibert EL, Zwier TS. Isomer-Specific Spectroscopy of Benzene-(H2O)n, n = 6,7: Benzene's Role in Reshaping Water's Three-Dimensional Networks. J Phys Chem Lett 2015; 6:1989-1995. [PMID: 26263279 DOI: 10.1021/acs.jpclett.5b00786] [Citation(s) in RCA: 33] [Impact Index Per Article: 3.7] [Reference Citation Analysis] [Abstract] [Key Words] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Indexed: 06/04/2023]
Abstract
The water hexamer and heptamer are the smallest sized water clusters that support three-dimensional hydrogen-bonded networks, with several competing structures that could be altered by interactions with a solute. Using infrared-ultraviolet double resonance spectroscopy, we record isomer-specific OH stretch infrared spectra of gas-phase benzene-(H2O)(6,7) clusters that demonstrate benzene's surprising role in reshaping (H2O)(6,7). The single observed isomer of benzene-(H2O)6 incorporates an inverted book structure rather than the cage or prism. The main conformer of benzene-(H2O)7 is an inserted-cubic structure in which benzene replaces one water molecule in the S4-symmetry cube of the water octamer, inserting itself into the water cluster by engaging as a π H-bond acceptor with one water and via C-H···O donor interactions with two others. The corresponding D(2d)-symmetry inserted-cube structure is not observed, consistent with the calculated energetic preference for the S4 over the D(2d) inserted cube. A reduced-dimension model that incorporates stretch-bend Fermi resonance accounts for the spectra in detail and sheds light on the hydrogen-bonding networks themselves and on the perturbations imposed on them by benzene.
Collapse
Affiliation(s)
- Daniel P Tabor
- †Department of Chemistry and Theoretical Chemistry Institute, University of Wisconsin-Madison, Madison, Wisconsin 53706, United States
| | - Ryoji Kusaka
- ‡Department of Chemistry, Purdue University, West Lafayette, Indiana 47907-2084, United States
- §Department of Chemistry, Graduate School of Science, Hiroshima University, Higashi-Hiroshima, 739-8526, Japan
| | - Patrick S Walsh
- ‡Department of Chemistry, Purdue University, West Lafayette, Indiana 47907-2084, United States
| | - Edwin L Sibert
- †Department of Chemistry and Theoretical Chemistry Institute, University of Wisconsin-Madison, Madison, Wisconsin 53706, United States
| | - Timothy S Zwier
- ‡Department of Chemistry, Purdue University, West Lafayette, Indiana 47907-2084, United States
| |
Collapse
|
21
|
Howard JC, Tschumper GS. Benchmark Structures and Harmonic Vibrational Frequencies Near the CCSD(T) Complete Basis Set Limit for Small Water Clusters: (H2O)n = 2, 3, 4, 5, 6. J Chem Theory Comput 2015; 11:2126-36. [DOI: 10.1021/acs.jctc.5b00225] [Citation(s) in RCA: 53] [Impact Index Per Article: 5.9] [Reference Citation Analysis] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Indexed: 11/30/2022]
Affiliation(s)
- J. Coleman Howard
- Department of Chemistry and
Biochemistry, University of Mississippi, University, Mississippi 38677−1848, United States
| | - Gregory S. Tschumper
- Department of Chemistry and
Biochemistry, University of Mississippi, University, Mississippi 38677−1848, United States
| |
Collapse
|
22
|
Shin BK, Choi TH. Investigation of potential energy landscapes of (H2O)7− and (H2O)8− clusters. Chem Phys Lett 2015. [DOI: 10.1016/j.cplett.2015.02.045] [Citation(s) in RCA: 0] [Impact Index Per Article: 0] [Reference Citation Analysis] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Indexed: 10/23/2022]
|
23
|
Bowman JM, Wang Y, Liu H, Mancini JS. Ab Initio Quantum Approaches to the IR Spectroscopy of Water and Hydrates. J Phys Chem Lett 2015; 6:366-373. [PMID: 26261949 DOI: 10.1021/jz502196f] [Citation(s) in RCA: 23] [Impact Index Per Article: 2.6] [Reference Citation Analysis] [Abstract] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Indexed: 06/04/2023]
Abstract
This Perspective highlights progress in ab initio quantum approaches to IR spectroscopy of water and hydrates. Here, "ab initio" refers to many-body potentials and dipole moment surfaces for flexible water and hydrates. Specifically, these are mathematical representations of two-body and three-body interactions based on permutationally invariant fitting of tens of thousands of ab initio electronic energies, a spectroscopically accurate one-body monomer potential, and four- and higher-body interactions described by the long-range interactions incorporated into, for example, the TTM3-F family of potentials. There are currently two such potentials of this type, denoted WHBB and MB-pol, which are being used in expanding applications. Here, the focus is on infrared spectroscopy, using the WHBB potential and dipole moment surface, with an embedded, local monomer quantum method to obtain vibrational energies and dipole transition moments. Comparisons are also made with the popular q-TIP4P/F potential. Brief mention is made of an application to small HCl-H2O clusters.
Collapse
Affiliation(s)
- Joel M Bowman
- Cherry L. Emerson Center for Scientific Computation and Department of Chemistry, Emory University, Atlanta, Georgia 30322, United States
| | - Yimin Wang
- Cherry L. Emerson Center for Scientific Computation and Department of Chemistry, Emory University, Atlanta, Georgia 30322, United States
| | - Hanchao Liu
- Cherry L. Emerson Center for Scientific Computation and Department of Chemistry, Emory University, Atlanta, Georgia 30322, United States
| | - John S Mancini
- Cherry L. Emerson Center for Scientific Computation and Department of Chemistry, Emory University, Atlanta, Georgia 30322, United States
| |
Collapse
|
24
|
Liu H, Wang Y, Bowman JM. Local-monomer calculations of the intramolecular IR spectra of the cage and prism isomers of HOD(D2O)5 and HOD and D2O ice Ih. J Phys Chem B 2014; 118:14124-31. [PMID: 25010120 DOI: 10.1021/jp5061182] [Citation(s) in RCA: 16] [Impact Index Per Article: 1.6] [Reference Citation Analysis] [Abstract] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Indexed: 11/29/2022]
Abstract
Dilute mixtures of HOD in pure H2O and D2O ices and liquid have been used by experimentalists to focus on the spectrum and vibrational dynamics of the local OH and OD stretches and bend of HOD in these complex and highly heterogeneous environments. The hexamer version of the mixture is HOD(D2O)5. The cage isomer of this cluster was recently studied and analyzed theoretically using local-mode calculations of the IR spectrum by Skinner and co-workers. This and the further possibility of experimental investigation of this cluster have stimulated us to study HOD(D2O)5 using the three-mode, local-monomer model, with the ab initio WHBB dipole moment and potential energy surfaces. Both the cage and prism isomers of this cluster are considered. In addition to providing additional insight into the HOD portion of the spectrum, the spectral signatures of each D2O are also presented in the range of 1000-4000 cm(-1). The OH stretch bands of both the prism and cage isotopomers exhibit rich structures in the range of 3100-3700 cm(-1) that are indicative of the position of the HOD in these hexamers. A preliminary investigation of the site preference of the HOD is also reported for both cage and prism HOD(D2O)5 using an harmonic zero-point energy analysis of the entire cluster. This indicates that the energies of free-OH sites are lower than the ones of H-bonded OH sites. Finally, following our earlier work on the IR spectra of H2O ice models, we present IR spectra of pure D2O and HOD.
Collapse
Affiliation(s)
- Hanchao Liu
- Cherry L. Emerson Center for Scientific Computation and Department of Chemistry, Emory University , Atlanta, Georgia 30322, United States
| | | | | |
Collapse
|
25
|
Fingerprints in IR OH vibrational spectra of H2O clusters from different H-bond conformations by means of quantum-chemical computations. J Mol Model 2014; 20:2281. [DOI: 10.1007/s00894-014-2281-x] [Citation(s) in RCA: 9] [Impact Index Per Article: 0.9] [Reference Citation Analysis] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Received: 02/13/2014] [Accepted: 04/25/2014] [Indexed: 11/25/2022]
|
26
|
Otto KE, Xue Z, Zielke P, Suhm MA. The Raman spectrum of isolated water clusters. Phys Chem Chem Phys 2014; 16:9849-58. [DOI: 10.1039/c3cp54272f] [Citation(s) in RCA: 66] [Impact Index Per Article: 6.6] [Reference Citation Analysis] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Indexed: 11/21/2022]
|
27
|
Buck U, Pradzynski CC, Zeuch T, Dieterich JM, Hartke B. A size resolved investigation of large water clusters. Phys Chem Chem Phys 2014; 16:6859-71. [DOI: 10.1039/c3cp55185g] [Citation(s) in RCA: 82] [Impact Index Per Article: 8.2] [Reference Citation Analysis] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Indexed: 11/21/2022]
|
28
|
Talukder S, Sen S, Neogi SG, Chaudhury P. A parallel tempering based study of Coulombic explosion and identification of dissociating fragments in charged noble gas clusters. J Chem Phys 2013; 139:164312. [PMID: 24182034 DOI: 10.1063/1.4825404] [Citation(s) in RCA: 10] [Impact Index Per Article: 0.9] [Reference Citation Analysis] [Abstract] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Indexed: 11/14/2022] Open
Abstract
In this communication, we would like to test the feasibility of a parallel tempering based study of dissociation in dicationic noble gas clusters, namely, Ar(n)(2+), Kr(n)(2+), and Xe(n)(2+), where "n" is the size of the cluster units. We would like to find out the correct limit for sizes of each of these systems, above which the clusters stay intact as a single unit and does not dissociate into fragments by the process of Coulomb explosion. Moreover, we would also like to, for a specific case, i.e., Ar(n)(2+), study in detail the fragmentation patterns and point out the switchover from the non-fission way to the fission mechanism of dissociation. In all these calculations, we would like to analyse, how close we are in our predictions with that of experimental results. As a further check on the dissociating patterns found out by parallel tempering, we also conduct basin hopping based study on representative sizes of the clusters and find that parallel tempering, as used for this present work as an optimizer, is able to predict correct features when compared with other celebrated methods like the basin hopping algorithm.
Collapse
Affiliation(s)
- Srijeeta Talukder
- Department of Chemistry, University of Calcutta, 92 A P C Road, Kolkata 700 009, India
| | | | | | | |
Collapse
|
29
|
|
30
|
Foley JJ, Mazziotti DA. Cage versus Prism: Electronic Energies of the Water Hexamer. J Phys Chem A 2013; 117:6712-6. [DOI: 10.1021/jp405739d] [Citation(s) in RCA: 16] [Impact Index Per Article: 1.5] [Reference Citation Analysis] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Indexed: 10/26/2022]
Affiliation(s)
- Jonathan J. Foley
- Department of Chemistry and The James
Franck Institute, The University of Chicago, Chicago, Illinois 60637, United States
- Center for Nanoscale Materials, Argonne National Laboratory, Argonne, Illinois 60439, United
States
| | - David A. Mazziotti
- Department of Chemistry and The James
Franck Institute, The University of Chicago, Chicago, Illinois 60637, United States
| |
Collapse
|
31
|
Simon A, Spiegelman F. Water clusters adsorbed on polycyclic aromatic hydrocarbons: Energetics and conformational dynamics. J Chem Phys 2013; 138:194309. [DOI: 10.1063/1.4805015] [Citation(s) in RCA: 25] [Impact Index Per Article: 2.3] [Reference Citation Analysis] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Indexed: 11/14/2022] Open
|
32
|
|
33
|
Wang Y, Bowman JM. IR Spectra of the Water Hexamer: Theory, with Inclusion of the Monomer Bend Overtone, and Experiment Are in Agreement. J Phys Chem Lett 2013; 4:1104-1108. [PMID: 26282028 DOI: 10.1021/jz400414a] [Citation(s) in RCA: 51] [Impact Index Per Article: 4.6] [Reference Citation Analysis] [Abstract] [Key Words] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Indexed: 06/04/2023]
Abstract
Signature IR spectra of isomers of the water hexamer in the spectral range 3000-3800 cm(-1) have been reported by experimentalists, but crucial theoretical interpretation has still not been definitive. Using ab initio potential and dipole moment surfaces and a fully coupled quantum treatment of the intramolecular modes, the ring and book are assigned to spectra obtained in the He nanodroplet and Ar tagging experiments, respectively. The overtone of the intramolecular bend at ca. 3200 cm(-1) is a new calculated feature that completes an important missing piece in previous experimental and theoretical comparisons and leads to a consistent assignment of these two experimental spectra. Calculated IR spectra for the lowest energy forms of the water heptamer and octomer are also presented and compared to experiment. In all the calculated spectra, the bend overtone is demonstrated to be a noticeable feature, and this is one important conclusion from the work. Also, the danger in using scaled double-harmonic spectra to assign spectra is demonstrated.
Collapse
Affiliation(s)
- Yimin Wang
- Department of Chemistry and Cherry L. Emerson Center for Scientific Computation, Emory University, Atlanta, Georgia 30322, United States
| | - Joel M Bowman
- Department of Chemistry and Cherry L. Emerson Center for Scientific Computation, Emory University, Atlanta, Georgia 30322, United States
| |
Collapse
|
34
|
Tainter CJ, Skinner JL. The water hexamer: three-body interactions, structures, energetics, and OH-stretch spectroscopy at finite temperature. J Chem Phys 2013; 137:104304. [PMID: 22979856 DOI: 10.1063/1.4746157] [Citation(s) in RCA: 76] [Impact Index Per Article: 6.9] [Reference Citation Analysis] [Abstract] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Indexed: 11/14/2022] Open
Abstract
Using a newly developed and recently parameterized classical empirical simulation model for water that involves explicit three-body interactions, we determine the eleven most stable isomers of the water hexamer. We find that the lowest energy isomer is one of the cage structures, in agreement with far-IR and microwave experiments. The energy ordering for the binding energies is cage > glove > book > bag > chair > boat > chaise, and energies relative to the cage are in good agreement with CCSD(T) calculations. The three-body contributions to the cage, book, and chair are also in reasonable agreement with CCSD(T) results. The energy of each isomer results from a delicate balance involving the number of hydrogen bonds, the strain of these hydrogen bonds, and cooperative and anti-cooperative three-body interactions, whose contribution we can understand simply from the form of the three-body interactions in the simulation model. Oxygen-oxygen distances in the cage and book isomers are in good agreement with microwave experiments. Hydrogen-bond distances depend on both donor and acceptor, which can again be understood from the three-body model. Fully anharmonic OH-stretch spectra are calculated for these low-energy structures, and compared with shifted harmonic results from ab initio and density functional theory calculations. Replica-exchange molecular dynamics simulations were performed from 40 to 194 K, which show that the cage isomer has the lowest free energy from 0 to 70 K, and the book isomer has the lowest free energy from 70 to 194 K. OH-stretch spectra were calculated between 40 and 194 K, and results at 40, 63, and 79 K were compared to recent experiments, leading to re-assignment of the peaks in the experimental spectra. We calculate local OH-stretch cumulative spectral densities for different donor-acceptor types and compare to analogous results for liquid water.
Collapse
Affiliation(s)
- C J Tainter
- Theoretical Chemistry Institute and Department of Chemistry, University of Wisconsin, Madison, Wisconsin 53706, USA
| | | |
Collapse
|
35
|
Tainter CJ, Ni Y, Shi L, Skinner JL. Hydrogen Bonding and OH-Stretch Spectroscopy in Water: Hexamer (Cage), Liquid Surface, Liquid, and Ice. J Phys Chem Lett 2013; 4:12-17. [PMID: 26291204 DOI: 10.1021/jz301780k] [Citation(s) in RCA: 77] [Impact Index Per Article: 7.0] [Reference Citation Analysis] [Abstract] [Key Words] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Indexed: 06/04/2023]
Abstract
We present a unified picture of how OH-stretch spectroscopy in water can be understood in terms of hydrogen bonding for the four systems listed in the title. To understand the strength, and hence OH-stretch frequency, of a hydrogen bond, it is crucial to consider the number of additional acceptor hydrogen bonds made by both the donor and acceptor molecules. This necessity for focusing on the hydrogen-bond environment of both donor and acceptor molecules follows from quantum chemical considerations and is related to the three-body interactions in water. Armed with this understanding we can make a detailed interpretation of the OH-stretch IR absorption spectrum of the cage conformer for HOD(D2O)5 and the imaginary part of the ssp OH-stretch sum-frequency spectrum of the surface of liquid D2O with dilute HOD.
Collapse
Affiliation(s)
- C J Tainter
- Theoretical Chemistry Institute and Department of Chemistry, University of Wisconsin, Madison, Wisconsin 53706, United States
| | - Y Ni
- Theoretical Chemistry Institute and Department of Chemistry, University of Wisconsin, Madison, Wisconsin 53706, United States
| | - L Shi
- Theoretical Chemistry Institute and Department of Chemistry, University of Wisconsin, Madison, Wisconsin 53706, United States
| | - J L Skinner
- Theoretical Chemistry Institute and Department of Chemistry, University of Wisconsin, Madison, Wisconsin 53706, United States
| |
Collapse
|
36
|
Pradzynski CC, Forck RM, Zeuch T, Slavicek P, Buck U. A Fully Size-Resolved Perspective on the Crystallization of Water Clusters. Science 2012; 337:1529-32. [DOI: 10.1126/science.1225468] [Citation(s) in RCA: 154] [Impact Index Per Article: 12.8] [Reference Citation Analysis] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Indexed: 11/02/2022]
|
37
|
Knurr BJ, Adams CL, Weber JM. Infrared spectroscopy of hydrated naphthalene cluster anions. J Chem Phys 2012; 137:104303. [DOI: 10.1063/1.4750371] [Citation(s) in RCA: 8] [Impact Index Per Article: 0.7] [Reference Citation Analysis] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Indexed: 11/14/2022] Open
Affiliation(s)
- Benjamin J. Knurr
- JILA, NIST, and Department of Chemistry and Biochemistry, University of Colorado at Boulder, Boulder, Colorado 80309, USA
| | - Christopher L. Adams
- JILA, NIST, and Department of Chemistry and Biochemistry, University of Colorado at Boulder, Boulder, Colorado 80309, USA
| | - J. Mathias Weber
- JILA, NIST, and Department of Chemistry and Biochemistry, University of Colorado at Boulder, Boulder, Colorado 80309, USA
| |
Collapse
|
38
|
León I, Montero R, Castaño F, Longarte A, Fernández JA. Mass-Resolved Infrared Spectroscopy of Complexes without Chromophore by Nonresonant Femtosecond Ionization Detection. J Phys Chem A 2012; 116:6798-803. [DOI: 10.1021/jp303937h] [Citation(s) in RCA: 16] [Impact Index Per Article: 1.3] [Reference Citation Analysis] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Indexed: 11/28/2022]
Affiliation(s)
- Iker León
- Dpto. Química Física, Fac. Ciencia y
Tecnología, Universidad del País Vasco-UPV/EHU, B° Sarriena, s/n, 48940 Leioa, Spain
| | - Raúl Montero
- Dpto. Química Física, Fac. Ciencia y
Tecnología, Universidad del País Vasco-UPV/EHU, B° Sarriena, s/n, 48940 Leioa, Spain
| | - Fernando Castaño
- Dpto. Química Física, Fac. Ciencia y
Tecnología, Universidad del País Vasco-UPV/EHU, B° Sarriena, s/n, 48940 Leioa, Spain
| | - Asier Longarte
- Dpto. Química Física, Fac. Ciencia y
Tecnología, Universidad del País Vasco-UPV/EHU, B° Sarriena, s/n, 48940 Leioa, Spain
| | - José A. Fernández
- Dpto. Química Física, Fac. Ciencia y
Tecnología, Universidad del País Vasco-UPV/EHU, B° Sarriena, s/n, 48940 Leioa, Spain
| |
Collapse
|
39
|
Perez C, Muckle MT, Zaleski DP, Seifert NA, Temelso B, Shields GC, Kisiel Z, Pate BH. Structures of Cage, Prism, and Book Isomers of Water Hexamer from Broadband Rotational Spectroscopy. Science 2012; 336:897-901. [DOI: 10.1126/science.1220574] [Citation(s) in RCA: 335] [Impact Index Per Article: 27.9] [Reference Citation Analysis] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Indexed: 11/02/2022]
|
40
|
Ceponkus J, Uvdal P, Nelander B. Water Tetramer, Pentamer, and Hexamer in Inert Matrices. J Phys Chem A 2012; 116:4842-50. [DOI: 10.1021/jp301521b] [Citation(s) in RCA: 71] [Impact Index Per Article: 5.9] [Reference Citation Analysis] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Indexed: 01/04/2023]
Affiliation(s)
- J. Ceponkus
- MAX-IV Laboratory, Lund University, P.O.
Box 118, SE-22100 Lund, Sweden
| | - P. Uvdal
- MAX-IV Laboratory, Lund University, P.O.
Box 118, SE-22100 Lund, Sweden
- Chemical Physics, Department of
Chemistry, Lund University, P.O. Box 124,
SE-22100 Lund, Sweden
| | - B. Nelander
- MAX-IV Laboratory, Lund University, P.O.
Box 118, SE-22100 Lund, Sweden
| |
Collapse
|
41
|
Forck RM, Pradzynski CC, Wolff S, Ončák M, Slavíček P, Zeuch T. Size resolved infrared spectroscopy of Na(CH3OH)n (n = 4–7) clusters in the OH stretching region: unravelling the interaction of methanol clusters with a sodium atom and the emergence of the solvated electron. Phys Chem Chem Phys 2012; 14:3004-16. [DOI: 10.1039/c2cp23301k] [Citation(s) in RCA: 18] [Impact Index Per Article: 1.5] [Reference Citation Analysis] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Indexed: 11/21/2022]
|
42
|
Góra U, Podeszwa R, Cencek W, Szalewicz K. Interaction energies of large clusters from many-body expansion. J Chem Phys 2011; 135:224102. [DOI: 10.1063/1.3664730] [Citation(s) in RCA: 119] [Impact Index Per Article: 9.2] [Reference Citation Analysis] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Indexed: 11/14/2022] Open
|
43
|
Guha S, Ray S, Chaudhury P. Study of coulomb explosion and dissociation channels in dicationic argon clusters: a study based on stochastic optimization. Struct Chem 2011. [DOI: 10.1007/s11224-011-9796-x] [Citation(s) in RCA: 13] [Impact Index Per Article: 1.0] [Reference Citation Analysis] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Indexed: 10/18/2022]
|
44
|
Choi TH, Sommerfeld T, Yilmaz SL, Jordan KD. Discrete Variable Representation Implementation of the One-Electron Polarization Model. J Chem Theory Comput 2010; 6:2388-94. [DOI: 10.1021/ct100263r] [Citation(s) in RCA: 5] [Impact Index Per Article: 0.4] [Reference Citation Analysis] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Indexed: 12/27/2022]
Affiliation(s)
- Tae Hoon Choi
- Department of Chemistry, University of Pittsburgh, Pittsburgh, Pennsylvania 15260, Southeastern Louisiana University, Hammond, Louisiana 70402, and Center for Simulation and Modeling, University of Pittsburgh, Pittsburgh, Pennsylvania 15260
| | - Thomas Sommerfeld
- Department of Chemistry, University of Pittsburgh, Pittsburgh, Pennsylvania 15260, Southeastern Louisiana University, Hammond, Louisiana 70402, and Center for Simulation and Modeling, University of Pittsburgh, Pittsburgh, Pennsylvania 15260
| | - S Levent Yilmaz
- Department of Chemistry, University of Pittsburgh, Pittsburgh, Pennsylvania 15260, Southeastern Louisiana University, Hammond, Louisiana 70402, and Center for Simulation and Modeling, University of Pittsburgh, Pittsburgh, Pennsylvania 15260
| | - Kenneth D Jordan
- Department of Chemistry, University of Pittsburgh, Pittsburgh, Pennsylvania 15260, Southeastern Louisiana University, Hammond, Louisiana 70402, and Center for Simulation and Modeling, University of Pittsburgh, Pittsburgh, Pennsylvania 15260
| |
Collapse
|
45
|
|
46
|
McCunn LR, Gardenier GH, Guasco TL, Elliott BM, Bopp JC, Relph RA, Johnson MA. Probing isomer interconversion in anionic water clusters using an Ar-mediated pump-probe approach: Combining vibrational predissociation and velocity-map photoelectron imaging spectroscopies. J Chem Phys 2008; 128:234311. [DOI: 10.1063/1.2932104] [Citation(s) in RCA: 14] [Impact Index Per Article: 0.9] [Reference Citation Analysis] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Indexed: 01/03/2023] Open
|
47
|
|
48
|
Li HN, Dai HX, He H, Tong Au C. Facile Route Using Highly Arrayed PMMA Spheres as Hard Template for the Fabrication of 3D Ordered Nanoporous MgO. CHINESE J CHEM PHYS 2007. [DOI: 10.1088/1674-0068/20/06/697-700] [Citation(s) in RCA: 1] [Impact Index Per Article: 0.1] [Reference Citation Analysis] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Indexed: 11/12/2022]
|
49
|
Hirabayashi S, Yamada KM. The monocyclic water hexamer detected in neon matrices by infrared spectroscopy. Chem Phys Lett 2007. [DOI: 10.1016/j.cplett.2006.12.083] [Citation(s) in RCA: 21] [Impact Index Per Article: 1.2] [Reference Citation Analysis] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Indexed: 11/30/2022]
|
50
|
Sommerfeld T, Gardner SD, DeFusco A, Jordan KD. Low-lying isomers and finite temperature behavior of (H2O)6−. J Chem Phys 2006; 125:174301. [PMID: 17100433 DOI: 10.1063/1.2358984] [Citation(s) in RCA: 42] [Impact Index Per Article: 2.3] [Reference Citation Analysis] [Abstract] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Indexed: 01/01/2023] Open
Abstract
(H2O)(6) (-) appears as a "magic" number water cluster in (H2O)(n) (-) mass spectra. The structure of the (H2O)(6) (-) isomer dominating the experimental population has been established only recently [N. I. Hammer et al., J. Phys. Chem. A 109, 7896 (2005)], and the most noteworthy characteristic of this isomer is the localization of the excess electron in the vicinity of a double-acceptor monomer. In the present work, we use a quantum Drude model to characterize the low-energy isomers and the finite temperature properties of (H2O)(6) (-). Comparison with ab initio calculations shows that the use of a water model employing distributed polarizabilities and distributed repulsive sites is necessary to correctly reproduce the energy ordering of the low-lying isomers. Both the simulations and the ab initio calculations predict that there are several isomers of (H2O)(6) (-) significantly lower in energy than the experimentally observed species, suggesting that the experimental distribution is far from equilibrium.
Collapse
Affiliation(s)
- Thomas Sommerfeld
- Department of Chemistry and Center for Molecular and Materials Simulation, University of Pittsburgh, Chevron Science Center, Pittsburgh, PA 15260, USA.
| | | | | | | |
Collapse
|