Molecular Structure, Spin Density Distribution, and Hyperfine Coupling Constants of the η{CuNO}11 Adduct in the ZSM-5 Zeolite: DFT Calculations and Comparison with EPR Data

Structural Studies of Aluminated form of Zeolites-EXAFS and XRD Experiment, STEM Micrography, and DFT Modelling

In this article, the results of computational structural studies on Al-containing zeolites, via periodic DFT + D modelling and FDM (Finite Difference Method) to solve the Schrödinger equation (FDMNES) for XAS simulations, corroborated by EXAFS (Extended X-ray Absorption Fine Structure) spectroscopy and PXRD (powder X-ray diffractometry), are presented. The applicability of Radial Distribution Function (RDF) to screen out the postulated zeolite structure is also discussed. The structural conclusions are further verified by HR-TEM imaging.

Zeolites at the Molecular Level: What Can Be Learned from Molecular Modeling

This review puts the development of molecular modeling methods in the context of their applications to zeolitic active sites. We attempt to highlight the utmost necessity of close cooperation between theory and experiment, resulting both in advances in computational methods and in progress in experimental techniques.

Spin-resolved NOCV analysis of the zeolite framework influence on the interaction of NO with Cu(i/ii) sites in zeolites

In the present work the function of a zeolite framework in modifying the properties of copper sites interacting with NO has been studied.

Mono- and dinitrosyls on copper(I) site in a zeolite model: effects of static correlation

Multiconfigurational RASSCF/RASPT2 approach has been applied to investigate bonding of one and two nitric oxide (NO) molecules to a simple model of Cu(I) site in zeolite environment, Cu(I)[Al(OH)(4)]. Two binding modes were considered for the mononitrosyls and four alternative structures for the dinitrosyls (each one in either singlet or triplet state). Stabilities of the mono- and dinitrosyl complexes obtained from the multireference calculations were compared to the previously reported coupled cluster CCSD(T) results, as well as to DFT calculations performed here with various functionals, either hybrid or nonhybrid ones. RASSCF calculations provided also a qualitative insight into the electronic structure of the studied complexes, concerning mainly the interaction between the Cu and the NO ligand, and between the two NO fragments. Whereas the electronic structure of the mononitrosyls is dominated by a single configuration, the dinitrosyls have a considerably multireference character. Various effects of nondynamical correlation have been pointed out for these interesting species, trying to assess their impact on performance of the tested DFT methods.

EPR-ENDOR of the Cu(I)NO complex of nitrite reductase

With limited reductant and nitrite under anaerobic conditions, copper-containing nitrite reductase (NiR) of Rhodobacter sphaeroides yielded endogenous NO and the Cu(I)NO derivative of NiR. (14)N- and (15)N-nitrite substrates gave rise to characteristic (14)NO and (15)NO EPR hyperfine features indicating NO involvement, and enrichment of NiR with (63)Cu isotope caused an EPR line shape change showing copper involvement. A markedly similar Cu(I)NONiR complex was made by anaerobically adding a little endogenous NO gas to reduced protein and immediately freezing. The Cu(I)NONiR signal accounted for 60-90% of the integrated EPR intensity formerly associated with the Type 2 catalytic copper. Analysis of NO and Cu hyperfine couplings and comparison to couplings of inorganic Cu(I)NO model systems indicated approximately 50% spin on the N of NO and approximately 17% spin on Cu. ENDOR revealed weak nitrogen hyperfine coupling to one or more likely histidine ligands of copper. Although previous crystallography of the conservative I289V mutant had shown no structural change beyond the 289 position, this mutation, which eliminates the Cdelta1 methyl of I289, caused the Cu(I)NONiR EPR spectrum to change and proton ENDOR features to be significantly altered. The proton hyperfine coupling that was significantly altered was consistent with a dipolar interaction between the Cdelta1 protons of I289 and electron spin on the NO, where the NO would be located 3.0-3.7 A from these protons. Such a distance positions the NO of Cu(I)NO as an axial ligand to Type 2 Cu(I).

Determining the Geometry and Magnetic Parameters of Fluorinated Radicals by Simulation of Powder ESR Spectra and DFT Calculations: The Case of the Radical RCF2CF2• in Nafion Perfluorinated Ionomers

The ESR spectrum of the chain-end radical RCF2CF2* detected in Nafion perfluorinated membranes exposed to the photo-Fenton reagent was accurately simulated by an automatic fitting procedure, using as input the hyperfine coupling tensors of the two F alpha and two F beta nuclei as well as the corresponding directions of the principal values from density functional theory (DFT) calculations. An accurate fit was obtained only for different orientations of the hyperfine coupling tensors for the two F alpha nuclei, indicating a nonplanar structure about the C alpha radical center. The fitted isotropic hyperfine splittings for the two F beta nuclei in the Nafion radical, 24.9 and 27.5 G, are significantly larger than those for the chain-end radical in Teflon (15 G), implying different radical conformations in the two systems. The excellent fit indicated that the geometry and electronic structure of free radicals can be obtained not only from single-crystal ESR spectroscopy, but also, in certain cases, from powder spectra, by combination with data from DFT calculations. The optimized structures obtained by DFT calculations for the CF3CF2CF2CF2* or CF3OCF2CF2* radicals as models provided additional support for the pyramidal structure determined from the spectral fit. Comparison and analysis of calculated and fitted values for the hyperfine splittings of the two F beta nuclei suggested that the radical detected by ESR in Nafion is ROCF2CF2*, which originates from attack of oxygen radicals on the Nafion side chain. The combination of spectrum fitting and DFT is considered important in terms of understanding the hyperfine splittings from 19F nuclei and the different conformations of fluorinated chain-end-type radicals RCF2CF2* in different systems, and also for elucidating the mechanism of Nafion fragmentation when exposed to oxygen radicals in fuel cell conditions.

The binding of nitric oxide at the Cu(i) site of copper nitrite reductase and of inorganic models: DFT calculations of the energetics and EPR parameters of side-on and end-on structures

Density functional theory calculations have been used to probe the end-on and side-on bonding motifs of nitric oxide at the Cu(i) centre in the enzyme copper nitrite reductase and in three inorganic model systems. We find that irrespective of a range of functionals used, the end-on structure is preferred by up to 40 kJ mol(-1), although this preference is smaller for the enzyme than for the inorganic model systems. We have calculated the g-tensor and atomic hyperfine coupling constants for these structures. When compared to available experimental data, for one model compound the calculated EPR parameters definitely favour an end-on structure, although this preference is somewhat less for the enzyme. Our prediction of NO end-on binding in the enzyme is at variance with structural data.

DFT calculations of magnetic parameters for molybdenum complexes and hydroxymethyl intermediates trapped on silica surface

Density functional theory (DFT) calculations of EPR parameters and their structure sensitivity for selected surface paramagnetic species involved in oxidative dehydrogenation of methanol over silica grafted molybdenum catalyst were investigated. Two surface complexes, Mo(4c)/SiO2 and {O(-)-Mo(4c)}/SiO2, as well as *CH2OH radical trapped on the SiO2 matrix were taken as the examples. The spin-restricted zeroth order regular approximation (ZORA) implemented in the Amsterdam Density Functional suite was used to calculate the electronic g tensor for those species. The predicted values were in satisfactory agreement with experimental EPR results. Five different coordination modes of the *CH2OH radical on the silica surface were considered and the isotropic 13C, 17O, and 1H hyperfine coupling constants (HFCC) of the resultant surface complexes were calculated. Structure sensitivity of the HFCC values was discussed in terms of the angular deformations caused by hydrogen bonding with the silica surface.

Investigations on the Effect of Mn Ions on the Local Structure and Photocatalytic Activity of Cu(I)−ZSM-5 Catalysts

The introduction of Mn ions into Cu(I)-ZSM-5 was found to lead to an enhancement of the photocatalytic activity for the direct decomposition of N2O into N2 and O2 at 298 K. Various in-situ techniques such as ESR, photoluminescence, XAFS as well as a combination of CO-FT-IR and CO-TPD measurements revealed that the accommodation of Mn ions within ZSM-5 zeolite cavities significantly affects the location sites of the ion-exchanged Cu(II) ions as well as the local structure of the Cu(I) ion species formed by evacuation at high temperatures. Moreover, the introduction of Mn ions into ZSM-5 led to an increase in the amount of 3-coordinated Cu(I) species at the main channel of the zeolite, playing a major role as the active species for the photocatalytic decomposition of N2O into N2 and O2.

Electron spin resonance studies of Cu(I)-NO complexes formed over copper-exchanged three- and unidimensional zeolites

Cu(I)-NO complexes, one of the essential intermediates in the NO decomposition reaction, were formed over copper exchanged and autoreduced Cu-ZSM-5, Cu-MCM-58, Cu-ZSM-12, and Cu-L zeolites, and studied by electron spin resonance spectroscopy at X-, Q-, and W-band frequencies. The spin Hamiltonian parameters of the NO adsorption complexes formed over pretreated materials firmly confirm the formation of Cu(I)-NO moieties. Two different Cu(I)-NO species A and B that are formed on account of different numbers of framework oxygen atoms coordinating to the Cu(I) cation are observed for Cu-ZSM-5, Cu-MCM-58, and Cu-ZSM-12 zeolites, while formation of a single Cu(I)-NO species B is observed in Cu-L zeolite. On the basis of the isotropic copper hyperfine couplings and the different channel topologies of the studied zeolite frameworks, we assign species A and B to Cu(I)-NO complexes formed at M5(7)-type and I2-type Cu(I) cation sites with either three or two oxygen co-ligands, respectively, supporting the results of previous quantum chemical studies on the Cu-ZSM-5 reference system. Whereas accessible five- or six-membered rings are clearly a prerequisite for M5(7)-type Cu(I) adsorption sites, the formation of I2-type sites in the unidimensional Cu-MCM-48, Cu-ZSM-12, and Cu-L zeolites suggests that not just channel intersection but also other structural motifs with exposed AlO4 tetrahedra can constitute such I2-type sites provided that sufficiently large channels can freely accommodate the Cu(I)-NO species.

Relativistic Density Functional Calculations of EPR g Tensor for η{CuNO}11 Species in Discrete and Zeolite-Embedded States

Spin-unrestricted zeroth order regular approximation (ZORA) and the scalar relativistic method based on Pauli Hamiltonian implemented in the Amsterdam Density Functional suite were used to calculate the electronic g tensor for isolated covalent {CuNO}(11) and electrostatic {q-NO}(1) species and for various model molecular and nonmolecular {CuNO}(11)-containing systems, epitomizing copper nitrosyl cage adducts in the ZSM-5 zeolite. The predicted g tensor values using the ZORA/VWN scheme were in satisfactory agreement with experimental EPR results. Relativistic, diamagnetic, and paramagnetic contributions to the calculated g tensor were quantified. The nature of the observed Deltag shifts was discussed in terms of the molecular orbital contributions due to the magnetic field-induced couplings and their structure sensitivity. The influence of basis set and exchange-correlation functional on the results was also briefly evaluated.

Critical Assessment of Electron Spin Resonance Studies on Cu(I)−NO Complexes in Cu−ZSM-5 Zeolites Prepared by Solid- and Liquid-State Ion Exchange

Cu(I)-NO adsorption complexes were formed over Cu-ZSM-5 zeolites prepared by (i) solid-state ion exchange of NH(4)-ZSM-5 with CuCl and (ii) liquid-state ion exchange of ZSM-5 with Cu(CH(3)COO)(2). Electron spin resonance spectroscopy revealed the formation of two different Cu(I)-NO species A and B in both systems, whose spin Hamiltonian parameters are comparable with those already reported for the Cu(I)-NO species formed over 66% Cu(II) liquid-state ion-exchanged Cu-ZSM-5 materials. The population of the species A and B differs for the two systems studied. Formation of species B is more favored in the solid-state ion-exchanged Cu-ZSM-5 when compared to the liquid-state exchanged zeolite. The X-, Q- and W-band electron spin resonance spectra recorded at 6 and 77 K reveal the presence of a rigid geometry of the adsorption complexes at 6 K and a dynamic complex structure at higher temperatures such as 77 K. This is indicated by the change in the spin Hamiltonian parameters of the formed Cu(I)-NO species in both the liquid- and solid-state ion-exchanged Cu-ZSM-5 zeolites from 6 to 77 K. Possible models for the motional effects found at elevated temperatures are discussed. The temperature dependence of the electron spin phase memory time measured by two-pulse electron spin-echo experiments indicates, likewise, the onset of a motional process of the adsorbed NO molecules at temperatures above 10 K. The studies support previous assignments where the NO complexes are formed at two different Cu(I) cationic sites in the ZSM-5 framework and highlight that multifrequency electron spin resonance experiments at low temperatures are essential for reliable determination of the spin Hamiltonian parameters of the formed adsorption complexes for further comparison with Cu(I)-NO complex structures predicted by quantum chemical calculations.

Pulsed ENDOR Study of Cu(I)−NO Adsorption Complexes in Cu−L Zeolite

The local environments of Cu(I)-NO adsorption complexes formed in zeolites Cu-L and Cu-ZSM-5 were studied by electron spin resonance (ESR), pulsed electron nuclear double resonance (ENDOR), and hyperfine sublevel correlation spectroscopy (HYSCORE). Cu(I)-NO complexes have attracted special interest because they are important intermediates in the catalytic decomposition of nitric oxide over copper exchanged zeolites. Recently, detailed structures of the complexes in Cu-ZSM-5 zeolites, O2-Al-O2-Cu(I)-NO, have been proposed on the basis of quantum chemical calculations (Pietrzyk, et al. J. Phys. Chem. B 2003, 107, 6105. Dedecek, et al. Phys. Chem. Chem. Phys. 2002, 4, 5406). 27Al pulsed ENDOR and HYSCORE experiments allowed the hyperfine coupling parameters of an aluminum nuclei found in the vicinity of the Cu(I)-NO complex formed in zeolite Cu-L to be estimated. The data indicate that the aluminum atom is located in the third coordination sphere of the adsorbed NO molecule in agreement with the suggested geometry of the adsorption sites. Broad distributions of aluminum nuclear quadrupole and hyperfine coupling parameters and short electron spin relaxation times of the Cu(I)-NO species prevented the determination of the 27Al hyperfine couplings for zeolite Cu-ZSM-5.

Density functional theory study of NO adsorbed in A-zeolite

Density functional theory was employed to investigate the adsorption site and hyperfine interactions of nitric oxide adsorbed in Na-LTA (previous name NaA) zeolite. Three different cluster models of increasing complexity were used to represent the zeolite network: (1) a six-membered ring terminated by hydrogen atoms with one sodium ion above the ring, (2) as model 1 with the addition of three sodium ions located at the centers of three imagined four-membered rings adjacent to the six-membered ring, and (3) as model 2 with the addition of the three four-membered rings adjacent to the six-membered ring. Calculations on the largest system (model 3) showed very good agreement with measured electronic Zeeman interaction couplings, 14N hyperfine coupling tensors, and 23Na hyperfine and nuclear quadruple coupling tensors of the S = 1/2 Na+...N-O adsorption complex when the position of the sodium ion was relaxed. The optimized geometry of the complex agreed nicely with that estimated experimentally, except for the Na-N distance, where the present results indicate that the distance deduced from previous ENDOR experiments may be underestimated by as much as 0.5 angstroms.

Spectroscopy and Computations of Supported Metal Adducts. 1. DFT Study of CO and NO Adsorption and Coadsorption on Cu/SiO2

Interactions of the CO and NO molecules with the Cu(II) and Cu(I) isolated sites on the amorphous silica surface are investigated by means of density functional theory (DFT) methods within the finite cluster model approach. The clusters of silica of increasing nT size (T = Si) are used, with n from 2 to 6. The Cu(II) sites are characterized by calculated g-tensors and hyperfine coupling constants (HFCCs) and compared with experiment. On this basis, the three-coordinated complexes are the most plausible. Due to the charge transfer from the silica "ligand", the metal charge shrinks and the spin density is distributed over silanol and siloxy groups up to 50%. The reduced sites are exclusively two-coordinated. Strong interaction of CO with Cu(I)-nT sites (31-39 kcal/mol) gives rise to the formation of carbonyl adducts with planar coordination around copper. The population of the ligand pi system shifts downward the stretching frequency in agreement with experiment. Reaction with a second CO molecule gives a geminal dicarbonyl of very uniform structure independent of the site. Carbonyl complexes with Cu(II) are less stable and of tetrahedral coordination of the metal. Accumulation of the positive charge on the complex along with sigma overlap with d orbitals locates the calculated CO stretching frequency above free molecule value. NO molecule is preferably bound to the Cu(II)-nT sites, forming a tetrahedral complex with tilted adsorbate and NO stretching frequency blue-shifted with respect to the free molecule value. The full set of electron paramagnetic resonance (EPR) parameters and vibrational frequencies for the copper(I) mononitrosyl, {CuNO}(11), though not observed experimentally, are predicted and compared to the same magnetophore inside the ZSM-5 zeolite. The interaction energies show that in the CO/NO reaction mixture adsorption is selective and allows discrimination between Cu(I) and Cu(II) sites. However, for the Cu(I) complex, formation of mixed-ligand structures of the {Cu(CO)(NO)}(11) type is possible.

EPR Spectroscopy of Cu(I)−NO Adsorption Complexes Formed over Cu−ZSM-5 and Cu−MCM-22 Zeolites

The Cu(I)-NO adsorption complexes were formed over copper exchanged and autoreduced high siliceous Cu-ZSM-5 and Cu-MCM-22 zeolites and studied by EPR spectroscopy at X-, Q-, and W-band frequencies. The spin Hamiltonian parameters of the Cu(I)-NO species are indicative of a nitrogen-centered radical complex with a bent geometry and a significant contribution of the Cu(I) 4s atomic orbital to the wave function of the unpaired electron. Two different Cu(I)-NO species were found in both zeolites. It has been confirmed by comparing the experimental data with the results of previous theoretical studies that the presence of two different species is due to the formation of Cu(I)-NO adsorption complexes from two different Cu(I) sites in the zeolite matrix with different numbers of oxygen coligands. The structure of the two sites in the Cu-ZSM-5 and Cu-MCM-22 zeolites must be similar as the spin Hamiltonian parameters are found to be almost independent of the zeolite matrix, where the Cu(I)-NO complex is formed. The EPR signal intensity of the Cu(I)-NO species was studied as a function of the NO loading, and the formation of diamagnetic Cu(I)-(NO)(2) species with rising NO pressure at the expense of paramagnetic Cu(I)-NO monomers could be demonstrated for both systems at low temperatures.

Paramagnetic species on catalytic surfaces--DFT investigations into structure sensitivity of the hyperfine coupling constants

Structure sensitivity of the hyperfine coupling constants was investigated by means of DFT calculations for selected surface paramagnetic species. A *CH2OH radical trapped on silica and intrazeolite copper nitrosyl adducts encaged in ZSM-5 were taken as the examples. The surface of amorphous silica was modeled with a [Si5O8H10] cluster, whereas the zeolite hosting sites were epitomized by [Si4AlO5(OH)10]- cluster. Three different coordination modes of the *CH2OH radical were considered and the isotropic 13C and 1H hyperfine constants of the resultant van der Waals complexes, calculated with B3LYP/6-311G(d), were discussed in terms of the angular deformations caused by hydrogen bonds with the cluster. The magnetic parameters of the eta1-N[CuNO]11 and eta1-O[CuNO]11 linkage isomers were calculated at the BPW91/LanL2DZ and 6-311G(df) level. For the most stable eta1-N adduct a clear dependence of the spin density distribution within the Cu-NO moiety on changes in the Cu-N-O angle and the Cu-N bond distance was observed and accounted for by varying spin polarization and delocalization contributions.