1
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Comparative Removal of Cr(VI) and F− Ions from Water by Freezing Technology. J CHEM-NY 2022. [DOI: 10.1155/2022/9143182] [Citation(s) in RCA: 0] [Impact Index Per Article: 0] [Reference Citation Analysis] [Abstract] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Indexed: 11/18/2022] Open
Abstract
Trace element ions, such as Cr(VI) and F−, are of particular interest due to their environmental impact. Both ions exhibit an anionic nature in water that can show similar removal tendencies except for their significant differences in ionic radius, speciation forms, and kosmotropic-chaotropic behaviors. Accordingly, partial freezing was performed to examine the comparative freeze separation efficiencies of Cr(VI) and F– from aqueous solutions. Freeze desalination influencing parameters such as initial ion concentration, salt addition, and freeze duration were explored. Under optimal operating conditions, freeze separation efficiencies of 90 ± 0.12 to 95 ± 0.54% and 58 ± 0.23% to 60 ± 0.34% from 5 mg/L of Cr(VI) and F–, respectively, were demonstrated. The salt addition into the F–-containing solutions revealed more F– ion intercalation into the ice, initiating the decrement of freeze separation efficiency. The influences of structuring-destructuring (kosmotropicity-chaotropicity) and the size-exclusion nature of ice crystals were used to explain the plausible mechanism for the difference in freeze separation efficiency between Cr(VI) and F– ions.
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2
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Gerber RB. My Trajectory in Molecular Reaction Dynamics and Spectroscopy. Annu Rev Phys Chem 2021; 72:1-34. [PMID: 33276702 DOI: 10.1146/annurev-physchem-090519-124238] [Citation(s) in RCA: 0] [Impact Index Per Article: 0] [Reference Citation Analysis] [Abstract] [Key Words] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Indexed: 11/09/2022]
Abstract
This is the story of a career in theoretical chemistry during a time of dramatic changes in the field due to phenomenal growth in the availability of computational power. It is likewise the story of the highly gifted graduate students and postdoctoral fellows that I was fortunate to mentor throughout my career. It includes reminiscences of the great mentors that I had and of the exciting collaborations with both experimentalists and theorists on which I built much of my research. This is an account of the developments of exciting scientific disciplines in which I was involved: vibrational spectroscopy, molecular reaction mechanisms and dynamics, e.g., in atmospheric chemistry, and the prediction of new, exotic molecules, in particular noble gas molecules. From my very first project to my current work, my career in science has brought me the excitement and fascination of research. What a wonderful pursuit!
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Affiliation(s)
- Robert Benny Gerber
- The Fritz Haber Research Center and Institute of Chemistry, The Hebrew University of Jerusalem, Jerusalem 91904, Israel; .,Department of Chemistry, University of California, Irvine, California 92697, USA
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3
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Mitra H, Roy TK. Comprehensive Benchmark Results for the Accuracy of Basis Sets for Anharmonic Molecular Vibrations. J Phys Chem A 2020; 124:9203-9221. [DOI: 10.1021/acs.jpca.0c06634] [Citation(s) in RCA: 15] [Impact Index Per Article: 3.8] [Reference Citation Analysis] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Indexed: 11/29/2022]
Affiliation(s)
- Hrishit Mitra
- Department of Chemistry and Chemical Sciences, Central University of Jammu, Rahya-Suchani (Bagla), Jammu, Jammu and Kashmir 181143, India
| | - Tapta Kanchan Roy
- Department of Chemistry and Chemical Sciences, Central University of Jammu, Rahya-Suchani (Bagla), Jammu, Jammu and Kashmir 181143, India
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4
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Abdo YA, Tschumper GS. Competition between Solvent-Solvent and Solvent-Solute Interactions in the Microhydration of the Hexafluorophosphate Anion, PF 6-(H 2O) n=1,2. J Phys Chem A 2020; 124:8744-8752. [PMID: 32993285 DOI: 10.1021/acs.jpca.0c06466] [Citation(s) in RCA: 1] [Impact Index Per Article: 0.3] [Reference Citation Analysis] [Abstract] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Indexed: 11/28/2022]
Abstract
This study systematically examines the interactions of the hexafluorophosphate anion (PF6-) with one or two solvent water molecules (PF6-(H2O)n where n = 1, 2). Full geometry optimizations and subsequent harmonic vibrational frequency computations are performed on each stationary point using a variety of common density functional theory methods (B3LYP, B3LYP-D3, M06-2X, and ωB97XD) and the MP2 and CCSD(T) ab initio methods with a triple-ζ correlation consistent basis set augmented with diffuse functions on all non-hydrogen atoms (cc-pVTZ for H and aug-cc-pVTZ for P, O, and F; denoted as haTZ). Five new stationary points of PF6-(H2O)2 have been identified, one of which has an electronic energy of approximately 2 kcal mol-1 lower than the only other dihydrate structure reported for this system. The CCSD(T) computations also reveal that the detailed interactions between PF6- and H2O can be quite difficult to model reliably, with some methods struggling to correctly characterize stationary points for n = 1 or accurately reproduce the vibrational frequency shifts induced by the formation of the hydrated complex. Although the interactions between the solvent and ionic solute are quite strong (CCSD(T) electronic dissociation energy ≈10 kcal mol-1 for the monohydrate minimum), the solvent-solvent interactions in the lowest-energy PF6-(H2O)2 minimum give rise to appreciable cooperative effects not observed in the other dihydrate minima. In addition, this newly identified structure exhibits the largest frequency shifts in the OH stretching vibrations for the waters of hydration (with Δω exceeding -100 cm-1 relative to the values for an isolated H2O molecule).
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Affiliation(s)
- Yasmeen A Abdo
- Department of Chemistry and Biochemistry, University of Mississippi, University, Mississippi 38677-1848, United States
| | - Gregory S Tschumper
- Department of Chemistry and Biochemistry, University of Mississippi, University, Mississippi 38677-1848, United States
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5
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Dvores MP, Çarçabal P, Maître P, Simons JP, Gerber RB. Gas phase dynamics, conformational transitions and spectroscopy of charged saccharides: the oxocarbenium ion, protonated anhydrogalactose and protonated methyl galactopyranoside. Phys Chem Chem Phys 2020; 22:4144-4157. [PMID: 32039431 DOI: 10.1039/c9cp06572e] [Citation(s) in RCA: 7] [Impact Index Per Article: 1.8] [Reference Citation Analysis] [Abstract] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Indexed: 12/19/2022]
Abstract
Protonated intermediates are postulated to be involved in the rate determining step of many sugar reactions. This paper presents a study of protonated sugar species, isolated in the gas phase, using a combination of infrared multiple photon dissociation (IRMPD) spectroscopy, classical ab initio molecular dynamics (AIMD) and quantum mechanical vibrational self-consistent field (VSCF) calculations. It provides a likely identification of the reactive intermediate oxocarbenium ion structure in a d-galactosyl system as well as the saccharide pyrolysis product anhydrogalactose (that suggests oxocarbenium ion stabilization), along with the spectrum of the protonated parent species: methyl d-galactopyranoside-H+. Its vibrational fingerprint indicates intramolecular proton sharing. Classical AIMD simulations for galactosyl oxocarbenium ions, conducted in the temperature range ∼300-350 K (using B3LYP potentials on-the-fly) reveal efficient transitions on the picosecond timescale. Multiple conformers are likely to exist under the experimental conditions and along with static VSCF calculations, they have facilitated the identification of the individual structural motifs of the galactosyl oxocarbenium ion and protonated anhydrogalactose ion conformers that contribute to the observed experimental spectra. These results demonstrate the power of experimental IRMPD spectroscopy combined with dynamics simulations and with computational spectroscopy at the anharmonic level to unravel conformer structures of protonated saccharides, and to provide information on their lifetimes.
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Affiliation(s)
- M P Dvores
- Institute of Chemistry and the Fritz Haber Research Center, The Hebrew University, Jerusalem 91904, Israel.
| | - P Çarçabal
- Université Paris-Saclay, CNRS, Institut des Sciences Moléculaires d'Orsay, 91405, Orsay, France
| | - P Maître
- Université Paris-Saclay, CNRS, Institut de Chimie Physique, 91405, Orsay, France
| | - J P Simons
- Department of Chemistry, Physical and Theoretical Chemistry Laboratory, Oxford University, South Parks Road, Oxford OX1 3QZ, UK
| | - R B Gerber
- Institute of Chemistry and the Fritz Haber Research Center, The Hebrew University, Jerusalem 91904, Israel. and Department of Chemistry, University of California Irvine, CA 92697, USA
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6
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Shahi A, McCaslin L, Albeck Y, Continetti RE, Gerber RB, Strasser D. Double Photodetachment of F -·H 2O: Experimental and Theoretical Studies of [F·H 2O] . J Phys Chem Lett 2018; 9:6808-6813. [PMID: 30433784 DOI: 10.1021/acs.jpclett.8b02562] [Citation(s) in RCA: 3] [Impact Index Per Article: 0.5] [Reference Citation Analysis] [Abstract] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Indexed: 06/09/2023]
Abstract
Double photodetachment of the cluster F-·H2O in a strong laser field is explored in a combined experimental-theoretical study. Products are observed experimentally by coincidence photofragment imaging following double ionization by intense laser pulses. Theoretically, equation of motion coupled cluster calculations (EOM-CC), suitable for modeling strong correlation effects in the electronic wave function, shed light on the Franck-Condon region, and ab initio molecular dynamics simulations also performed using EOM-CC methods reveal the fragmentation dynamics in time on the lowest-lying singlet and triplet states of [F·H2O]+. The simulations show the formation of H2O+ + F, which is the predominant experimentally observed product channel. Suggestions are proposed for the formation mechanisms of the minor products, for example, the very interesting H2F+, which involves significant geometrical rearrangement. Analysis of the results suggests interesting future directions for the exploration of photodetachment of anionic clusters in an intense laser field.
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Affiliation(s)
- Abhishek Shahi
- Institute of Chemistry , The Hebrew University of Jerusalem , Jerusalem 91904 , Israel
| | - Laura McCaslin
- Fritz Haber Center for Molecular Dynamics, Institute of Chemistry , The Hebrew University of Jerusalem , Jerusalem 91904 , Israel
| | - Yishai Albeck
- Institute of Chemistry , The Hebrew University of Jerusalem , Jerusalem 91904 , Israel
| | - Robert E Continetti
- Department of Chemistry and Biochemistry , University of California San Diego , La Jolla , California 92093-0340 , United States
| | - R Benny Gerber
- Fritz Haber Center for Molecular Dynamics, Institute of Chemistry , The Hebrew University of Jerusalem , Jerusalem 91904 , Israel
- Department of Chemistry , University of California , Irvine , California 92697 , United States
| | - Daniel Strasser
- Institute of Chemistry , The Hebrew University of Jerusalem , Jerusalem 91904 , Israel
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7
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Jian FF, Liu E, Ma J. Encapsulation of Chloride-water cluster anion [Cl6(H2O)8]6- in a cage structure based [Cu(DMAP)4]2+ aggregation. Supramol Chem 2018. [DOI: 10.1080/10610278.2018.1490021] [Citation(s) in RCA: 5] [Impact Index Per Article: 0.8] [Reference Citation Analysis] [Track Full Text] [Journal Information] [Submit a Manuscript] [Subscribe] [Scholar Register] [Indexed: 10/28/2022]
Affiliation(s)
- Fang Fang Jian
- Department of Chemical Enginerring, School of Chemical Engineering and Pharmaceutics, Henan University of Science and Technology, Luoyang, Henan, P. R. China
| | - E Liu
- Department of Chemical Enginerring, School of Chemical Engineering and Pharmaceutics, Henan University of Science and Technology, Luoyang, Henan, P. R. China
| | - Junying Ma
- Department of Chemical Enginerring, School of Chemical Engineering and Pharmaceutics, Henan University of Science and Technology, Luoyang, Henan, P. R. China
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8
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Hirshberg B, Gerber RB, Krylov AI. Autocorrelation of electronic wave-functions: a new approach for describing the evolution of electronic structure in the course of dynamics. Mol Phys 2018. [DOI: 10.1080/00268976.2018.1464675] [Citation(s) in RCA: 1] [Impact Index Per Article: 0.2] [Reference Citation Analysis] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Indexed: 10/17/2022]
Affiliation(s)
- Barak Hirshberg
- Fritz Haber Center for Molecular Dynamics, Institute of Chemistry , Jerusalem, Israel
| | - R. Benny Gerber
- Fritz Haber Center for Molecular Dynamics, Institute of Chemistry , Jerusalem, Israel
- Department of Chemistry, University of California , Irvine, CA, USA
| | - Anna I. Krylov
- Department of Chemistry, University of Southern California , Los Angeles, CA, USA
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9
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Mallory JD, Mandelshtam VA. Nuclear Quantum Effects and Thermodynamic Properties for Small (H2O)1–21X– Clusters (X– = F–, Cl–, Br–, I–). J Phys Chem A 2018; 122:4167-4180. [DOI: 10.1021/acs.jpca.8b00917] [Citation(s) in RCA: 6] [Impact Index Per Article: 1.0] [Reference Citation Analysis] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Indexed: 01/17/2023]
Affiliation(s)
- Joel D. Mallory
- Department of Chemistry, University of California, Irvine, California 92697, United States
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10
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Shi R, Wang P, Tang L, Huang X, Chen Y, Su Y, Zhao J. Structures and Spectroscopic Properties of F -(H 2O) n with n = 1-10 Clusters from a Global Search Based On Density Functional Theory. J Phys Chem A 2018; 122:3413-3422. [PMID: 29546760 DOI: 10.1021/acs.jpca.7b08872] [Citation(s) in RCA: 11] [Impact Index Per Article: 1.8] [Reference Citation Analysis] [Abstract] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Indexed: 11/28/2022]
Abstract
Using a genetic algorithm incorporated in density functional theory, we explore the ground state structures of fluoride anion-water clusters F-(H2O) n with n = 1-10. The F-(H2O) n clusters prefer structures in which the F- anion remains at the surface of the structure and coordinates with four water molecules, as the F-(H2O) n clusters have strong F--H2O interactions as well as strong hydrogen bonds between H2O molecules. The strong interaction between the F- anion and adjacent H2O molecule leads to a longer O-H distance in the adjacent molecule than in an individual water molecule. The simulated infrared (IR) spectra of the F-(H2O)1-5 clusters obtained via second-order vibrational perturbation theory (VPT2) and including anharmonic effects reproduce the experimental results quite well. The strong interaction between the F- anion and water molecules results in a large redshift (600-2300 cm-1) of the adjacent O-H stretching mode. Natural bond orbital (NBO) analysis of the lowest-energy structures of the F-(H2O)1-10 clusters illustrates that charge transfer from the lone pair electron orbital of F- to the antibonding orbital of the adjacent O-H is mainly responsible for the strong interaction between the F- anion and water molecules, which leads to distinctly different geometric and vibrational properties compared with neutral water clusters.
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Affiliation(s)
- Ruili Shi
- Key Laboratory of Materials Modification by Laser, Ion and Electron Beams , Dalian University of Technology, Ministry of Education , Dalian 116024 , China
| | - Pengju Wang
- Key Laboratory of Materials Modification by Laser, Ion and Electron Beams , Dalian University of Technology, Ministry of Education , Dalian 116024 , China
| | - Lingli Tang
- College of Science , Dalian Minzu University , Dalian 116600 , China
| | - Xiaoming Huang
- School of Ocean Science and Technology , Dalian University of Technology , Panjin Campus, Panjin 124221 , China
| | - Yonggang Chen
- Network and Information Center , Dalian University of Technology , Dalian 116024 , China
| | - Yan Su
- Key Laboratory of Materials Modification by Laser, Ion and Electron Beams , Dalian University of Technology, Ministry of Education , Dalian 116024 , China
| | - Jijun Zhao
- Key Laboratory of Materials Modification by Laser, Ion and Electron Beams , Dalian University of Technology, Ministry of Education , Dalian 116024 , China
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11
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Jian FF, Liu E, Ma JY. Interesting fluorine anion water clusters [F−·(H2O)n] in metal complex crystals. CrystEngComm 2018. [DOI: 10.1039/c8ce00532j] [Citation(s) in RCA: 5] [Impact Index Per Article: 0.8] [Reference Citation Analysis] [Abstract] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Indexed: 11/21/2022]
Abstract
Three crystalline complexes containing fluorine anion water cluster were reported. The fluoride anions and water molecules are H-bonded to each other in an alternating fashion within the fluoride–water hybrid cluster, where a fluoride anion plays the important role.
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Affiliation(s)
- Fang Fang Jian
- School of Chemical Engineering and Pharmaceutics
- Henan University of Science and Technology
- Luoyang
- P. R. China
| | - E. Liu
- School of Chemical Engineering and Pharmaceutics
- Henan University of Science and Technology
- Luoyang
- P. R. China
| | - Jun Ying Ma
- School of Chemical Engineering and Pharmaceutics
- Henan University of Science and Technology
- Luoyang
- P. R. China
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12
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Ray AW, Ma J, Otto R, Li J, Guo H, Continetti RE. Effects of vibrational excitation on the F + H 2O → HF + OH reaction: dissociative photodetachment of overtone-excited [F-H-OH] . Chem Sci 2017; 8:7821-7833. [PMID: 29163919 PMCID: PMC5674243 DOI: 10.1039/c7sc03364h] [Citation(s) in RCA: 15] [Impact Index Per Article: 2.1] [Reference Citation Analysis] [Abstract] [Track Full Text] [Download PDF] [Figures] [Journal Information] [Subscribe] [Scholar Register] [Received: 08/02/2017] [Accepted: 09/23/2017] [Indexed: 11/21/2022] Open
Abstract
Photodetaching vibrationally excited FH2O– channels energy into the reaction coordinate of the F + H2O reaction, as shown in this joint experimental-theoretical study.
The reaction F + H2O → HF + OH is a four-atom system that provides an important benchmark for reaction dynamics. Hydrogen atom transfer at the transition state for this reaction is expected to exhibit a strong dependence on reactant vibrational excitation. In the present study, the vibrational effects are examined by photodetachment of vibrationally excited F–(H2O) precursor anions using photoelectron-photofragment coincidence (PPC) spectroscopy and compared with full six-dimensional quantum dynamical calculations on ab initio potential energy surfaces. Prior to photodetachment at hνUV = 4.80 eV, the overtone of the ionic hydrogen bond mode in the precursor F–(H2O), 2νIHB at 2885 cm–1, was excited using a tunable IR laser. Experiment and theory show that vibrational energy in the anion can be effectively carried away by the photoelectron upon a Franck–Condon photodetachment, and also show evidence for an increase of branching into the F + H2O reactant channel. The experimental results suggest a greater role for product rotational excitation than theory. Improved potential energy surfaces and longer wavepacket propagation times would be helpful to further examine the nature of the discrepancy.
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Affiliation(s)
- Amelia W Ray
- Department of Chemistry and Biochemistry , University of California, San Diego , 9500 Gilman Drive , La Jolla , California 92093-0340 , USA .
| | - Jianyi Ma
- Institute of Atomic and Molecular Physics , Sichuan University , Chengdu , Sichuan 610065 , China .
| | - Rico Otto
- Department of Chemistry and Biochemistry , University of California, San Diego , 9500 Gilman Drive , La Jolla , California 92093-0340 , USA .
| | - Jun Li
- School of Chemistry and Chemical Engineering , Chongqing University , Chongqing 401331 , China
| | - Hua Guo
- Department of Chemistry and Chemical Biology , University of New Mexico , Albuquerque , New Mexico 87131 , USA
| | - Robert E Continetti
- Department of Chemistry and Biochemistry , University of California, San Diego , 9500 Gilman Drive , La Jolla , California 92093-0340 , USA .
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13
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Sarka J, Lauvergnat D, Brites V, Császár AG, Léonard C. Rovibrational energy levels of the F−(H2O) and F−(D2O) complexes. Phys Chem Chem Phys 2016; 18:17678-90. [DOI: 10.1039/c6cp02874h] [Citation(s) in RCA: 19] [Impact Index Per Article: 2.4] [Reference Citation Analysis] [Abstract] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Indexed: 11/21/2022]
Abstract
A new accurate 6D PES is determined obtained from CCSD(T)-F12 calculations including two dissociation channels (HF + OH− and F− + H2O). A novel way is developed to use complex coordinates in variational nuclear motion computations. The rovibrational energies of F−(H2O) (the complete set up to 3700 cm−1) and F−(D2O) have been computed. The tunneling splittings describing the two complexes are obtained.
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Affiliation(s)
- János Sarka
- Laboratory of Molecular Structure and Dynamics
- Institute of Chemistry
- Eötvös University and MTA-ELTE Complex Chemical Systems Research Group
- H-1518 Budapest 112
- Hungary
| | - David Lauvergnat
- Université Paris-Sud
- Laboratoire de Chimie Physique
- LCP UMR 8000 CNRS
- F-91405 Orsay
- France
| | - Vincent Brites
- Université Paris-Est
- Laboratoire Modélisation et Simulation Multi Echelle
- MSME UMR 8208 CNRS
- F-77454 Marne-la-Vallée
- France
| | - Attila G. Császár
- Laboratory of Molecular Structure and Dynamics
- Institute of Chemistry
- Eötvös University and MTA-ELTE Complex Chemical Systems Research Group
- H-1518 Budapest 112
- Hungary
| | - Celine Léonard
- Université Paris-Est
- Laboratoire Modélisation et Simulation Multi Echelle
- MSME UMR 8208 CNRS
- F-77454 Marne-la-Vallée
- France
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14
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Ishibashi C, Iwata S, Onoe K, Matsuzawa H. Hydrogen-Bonded Networks in Hydride Water Clusters, F-(H2O)n and Cl-(H2O)n: Cubic Form of F-(H2O)7 and Cl-(H2O)7. J Phys Chem A 2015; 119:10241-53. [PMID: 26371716 DOI: 10.1021/acs.jpca.5b07244] [Citation(s) in RCA: 8] [Impact Index Per Article: 0.9] [Reference Citation Analysis] [Abstract] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Indexed: 11/28/2022]
Abstract
The anion-water bonds and hydrogen bonds between water molecules in X(-)(H(2)O)(n) (X = F and Cl, n = 3-7) clusters are analyzed by evaluating the charge-transfer (CT) and dispersion terms for every pair of ions and molecules with the perturbation theory based on the locally projected molecular orbitals. In particular, the relative stabilities and the bond strengths in all 11 distinct cubic X(-)(H(2)O)(7) isomers are analyzed by classifying the ligand water (L) with the numbers of the donating (n) and accepting (m) OHs as LD(n)A(m). The number of LD(0)A(2) waters determines the relative stability. It is demonstrated that the strengths of the anion-ligand bonds are strongly influenced by two other hydrogen bonds of the water molecules adjacent to the ligand. When the model theory of Mulliken's charge-transfer interaction is applied to the anion-ligand and water-water hydrogen bonds, the dependence of the bond strengths on the chains of the hydrogen bonds is explained.
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Affiliation(s)
- Chiaki Ishibashi
- Department of Life and Environmental Sciences, Graduate School of Engineering, Chiba Institute of Technology , Tsudanuma, Narashino, Chiba 275-0016, Japan
| | - Suehiro Iwata
- Department of Chemistry, Faculty of Science and Technology, Keio University , Hiyoshi, Kohoku, Yokohama 223-8522, Japan
| | - Kaoru Onoe
- Department of Life and Environmental Sciences, Graduate School of Engineering, Chiba Institute of Technology , Tsudanuma, Narashino, Chiba 275-0016, Japan
| | - Hidenori Matsuzawa
- Department of Life and Environmental Sciences, Graduate School of Engineering, Chiba Institute of Technology , Tsudanuma, Narashino, Chiba 275-0016, Japan.,Department of Chemistry, Center of Education, Chiba Institute of Technology , Shibazono, Narashino, Chiba 275-0023, Japan
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15
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Sanchéz-Lozano M, Mandado M, Pérez-Juste I, Hermida-Ramón JM. Theoretical vibrational Raman and surface-enhanced Raman scattering spectra of water interacting with silver clusters. Chemphyschem 2014; 15:4067-76. [PMID: 25263101 DOI: 10.1002/cphc.201402454] [Citation(s) in RCA: 6] [Impact Index Per Article: 0.6] [Reference Citation Analysis] [Abstract] [Key Words] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Received: 06/25/2014] [Indexed: 11/11/2022]
Abstract
In this study, we analyzed the Raman spectrum of a water molecule adsorbed on a cluster of 20 silver atoms, and the plasmonic electromagnetic effect of the silver surface was also considered to give a theoretical prediction of the surface-enhanced Raman scattering spectrum. The calculations were performed at the density functional theory (DFT) level by using both frozen and unfrozen silver clusters. Two different models were used to consider the plasmonic enhancement; one of them was a modified classical (dipole) model and the other was the coupled perturbed Hartree-Fock method with excitation frequencies obtained from time-dependent DFT calculations and with proper detuning of these frequencies. The importance of small geometrical distortions of the silver surface in the orientation of the adsorbed water was shown. Moreover, it was shown how the symmetry of the transition dipole moment and the symmetry of the vibrational modes influence the Raman intensities of the SERS spectrum.
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Affiliation(s)
- Marta Sanchéz-Lozano
- Departamento de Química Física, Facultade de Química, Universidade de Vigo, Campus Lagoas Marcosende s/n, 36310 Vigo (Spain)
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16
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Ogata Y, Kawashima Y, Takahashi K, Tachikawa M. Is the structure of hydroxide dihydrate OH−(H2O)2? An ab initio path integral molecular dynamics study. Theor Chem Acc 2014. [DOI: 10.1007/s00214-014-1587-1] [Citation(s) in RCA: 2] [Impact Index Per Article: 0.2] [Reference Citation Analysis] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Indexed: 10/24/2022]
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17
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Lee HM, Youn IS, Kim KS. CO Capture and Conversion to HOCO Radical by Ionized Water Clusters. J Phys Chem A 2014; 118:7274-9. [DOI: 10.1021/jp410927a] [Citation(s) in RCA: 4] [Impact Index Per Article: 0.4] [Reference Citation Analysis] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Indexed: 01/17/2023]
Affiliation(s)
- Han Myoung Lee
- Department
of Chemistry, School of Natural Science, Ulsan National Institute of Science and Technology (UNIST), Ulsan 689-798, Korea
- Center for Superfunctional Materials, Department of Chemistry, Pohang University of Science and Technology, Pohang 790-784, Korea
| | - Il-Seung Youn
- Department
of Chemistry, School of Natural Science, Ulsan National Institute of Science and Technology (UNIST), Ulsan 689-798, Korea
- Center for Superfunctional Materials, Department of Chemistry, Pohang University of Science and Technology, Pohang 790-784, Korea
| | - Kwang S. Kim
- Department
of Chemistry, School of Natural Science, Ulsan National Institute of Science and Technology (UNIST), Ulsan 689-798, Korea
- Center for Superfunctional Materials, Department of Chemistry, Pohang University of Science and Technology, Pohang 790-784, Korea
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18
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H/D isotope effect on structures, binding energies, and basis set superposition errors in F−(H2O)n (n=1–3) clusters. Chem Phys 2014. [DOI: 10.1016/j.chemphys.2014.07.014] [Citation(s) in RCA: 6] [Impact Index Per Article: 0.6] [Reference Citation Analysis] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Indexed: 11/19/2022]
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19
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Werhahn JC, Akase D, Xantheas SS. Universal scaling of potential energy functions describing intermolecular interactions. II. The halide-water and alkali metal-water interactions. J Chem Phys 2014; 141:064118. [DOI: 10.1063/1.4891820] [Citation(s) in RCA: 18] [Impact Index Per Article: 1.8] [Reference Citation Analysis] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Indexed: 12/21/2022] Open
Affiliation(s)
- Jasper C. Werhahn
- Physik-Department E11, Technische Universität München, James-Franck-Strasse, D-85748 Garching, Germany
| | - Dai Akase
- Center for Quantum Life Sciences and Department of Chemistry, Graduate School of Science, Hiroshima University, 1-3-1 Kagamiyama, Higashi-Hiroshima 739-8526, Japan
| | - Sotiris S. Xantheas
- Physical Sciences Division, Pacific Northwest National Laboratory, 902 Battelle Boulevard, P.O. Box 999, MS K1-83, Richland, Washington 99352, USA
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Beck JP, Cimas A, Lisy JM, Gaigeot MP. O-H anharmonic vibrational motions in Cl(-)···(CH3OH)(1-2) ionic clusters. Combined IRPD experiments and AIMD simulations. SPECTROCHIMICA ACTA. PART A, MOLECULAR AND BIOMOLECULAR SPECTROSCOPY 2014; 119:12-17. [PMID: 23810567 DOI: 10.1016/j.saa.2013.05.073] [Citation(s) in RCA: 11] [Impact Index Per Article: 1.1] [Reference Citation Analysis] [Abstract] [Key Words] [MESH Headings] [Track Full Text] [Subscribe] [Scholar Register] [Received: 03/01/2013] [Revised: 05/15/2013] [Accepted: 05/19/2013] [Indexed: 06/02/2023]
Abstract
The structures of Cl(-)-(Methanol)1,2 clusters have been unraveled combining Infrared Predissociation (IR-PD) experiments and DFT-based molecular dynamics simulations (DFT-MD) at 100 K. The dynamical IR spectra extracted from DFT-MD provide the initial 600 cm(-1) large anharmonic red-shift of the O-H stretch from uncomplexed methanol (3682 cm(-1)) to Cl(-)-(Methanol)1 complex (3085 cm(-1)) as observed in the IR-PD experiment, as well as the subtle supplementary blue- and red-shifts of the O-H stretch in Cl(-)-(Methanol)2 depending on the structure. The anharmonic vibrational calculations remarkably provide the 100 cm(-1) O-H blue-shift when the two methanol molecules are simultaneously organized in the anion first hydration shell (conformer 2A), while they provide the 240 cm(-1) O-H red-shift when the second methanol is in the second hydration shell of Cl(-) (conformer 2B). RRKM calculations have also shown that 2A/2B conformers interconvert on a nanosecond time-scale at the estimated 100 K temperature of the clusters formed by evaporative cooling of argon prior to the IR-PD process.
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Affiliation(s)
- Jordan P Beck
- Concordia University Wisconsin, 12800 N. Lakeshore Drive, Mequon, WI 53097, USA.
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21
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Kamarchik E, Toffoli D, Christiansen O, Bowman JM. Ab initio potential energy and dipole moment surfaces of the F(-)(H2O) complex. SPECTROCHIMICA ACTA. PART A, MOLECULAR AND BIOMOLECULAR SPECTROSCOPY 2014; 119:59-62. [PMID: 23756053 DOI: 10.1016/j.saa.2013.04.076] [Citation(s) in RCA: 15] [Impact Index Per Article: 1.5] [Reference Citation Analysis] [Abstract] [Key Words] [MESH Headings] [Track Full Text] [Subscribe] [Scholar Register] [Received: 11/30/2012] [Revised: 04/16/2013] [Accepted: 04/22/2013] [Indexed: 06/02/2023]
Abstract
We present full-dimensional, ab initio potential energy and dipole moment surfaces for the F(-)(H2O) complex. The potential surface is a permutationally invariant fit to 16,114 coupled-cluster single double (triple)/aVTZ energies, while the dipole surface is a covariant fit to 11,395 CCSD(T)/aVTZ dipole moments. Vibrational self-consistent field/vibrational configuration interaction (VSCF/VCI) calculations of energies and the IR-spectrum are presented both for F(-)(H2O) and for the deuterated analog, F(-)(D2O). A one-dimensional calculation of the splitting of the ground state, due to equivalent double-well global minima, is also reported.
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Affiliation(s)
- Eugene Kamarchik
- Combustion Research Facility, Sandia National Laboratories, Livermore, CA 94551, USA
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22
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Kawashima Y, Suzuki K, Tachikawa M. Ab Initio Path Integral Simulations for the Fluoride Ion–Water Clusters: Competitive Nuclear Quantum Effect Between F––Water and Water–Water Hydrogen Bonds. J Phys Chem A 2013; 117:5205-10. [DOI: 10.1021/jp403295h] [Citation(s) in RCA: 16] [Impact Index Per Article: 1.5] [Reference Citation Analysis] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Indexed: 11/28/2022]
Affiliation(s)
- Yukio Kawashima
- Quantum Chemistry Division, Graduate School of Science, Graduate School of Nanobioscience, Yokohama City University , Yokohama 236-0027, Japan
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23
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Lee HM, Kim KS. Dynamics and structural changes of small water clusters on ionization. J Comput Chem 2013; 34:1589-97. [DOI: 10.1002/jcc.23296] [Citation(s) in RCA: 37] [Impact Index Per Article: 3.4] [Reference Citation Analysis] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Received: 01/31/2013] [Revised: 03/19/2013] [Accepted: 03/22/2013] [Indexed: 01/02/2023]
Affiliation(s)
- Han Myoung Lee
- Department of Chemistry; Center for Superfunctional Materials, Pohang University of Science and Technology; San 31, Hyojadong; Namgu; Pohang; 790-784; Korea
| | - Kwang S. Kim
- Department of Chemistry; Center for Superfunctional Materials, Pohang University of Science and Technology; San 31, Hyojadong; Namgu; Pohang; 790-784; Korea
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24
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Morita M, Takahashi K. Theoretical study on the difference of OH vibrational spectra between OH−(H2O)3 and OH−(H2O)4. Phys Chem Chem Phys 2012; 14:2797-808. [DOI: 10.1039/c2cp23203k] [Citation(s) in RCA: 28] [Impact Index Per Article: 2.3] [Reference Citation Analysis] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Indexed: 11/21/2022]
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25
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Toffoli D, Sparta M, Christiansen O. Vibrational spectroscopy of hydrogen-bonded systems: Six-dimensional simulation of the IR spectrum of F−(H2O) complex. Chem Phys Lett 2011. [DOI: 10.1016/j.cplett.2011.05.008] [Citation(s) in RCA: 10] [Impact Index Per Article: 0.8] [Reference Citation Analysis] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Indexed: 11/24/2022]
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26
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Meng K, Wang J. Anharmonic overtone and combination states of glycine and two model peptides examined by vibrational self-consistent field theory. Phys Chem Chem Phys 2011; 13:2001-13. [DOI: 10.1039/c0cp01177k] [Citation(s) in RCA: 13] [Impact Index Per Article: 1.0] [Reference Citation Analysis] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Indexed: 11/21/2022]
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27
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Xantheas SS. Anharmonic vibrational spectra of hydrogen bonded clusters: comparison between higher energy derivative and mean-field grid based methods. INT REV PHYS CHEM 2010. [DOI: 10.1080/01442350600922564] [Citation(s) in RCA: 16] [Impact Index Per Article: 1.1] [Reference Citation Analysis] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Indexed: 10/24/2022]
Affiliation(s)
- Sotiris S. Xantheas
- a Chemical Sciences Division , Pacific Northwest National Laboratory , 902 Battelle Boulevard, PO Box 999, MS K1-83, Richland , WA, 99352 , USA
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28
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Suzuki K, Tachikawa M, Shiga M. Efficient ab initio path integral hybrid Monte Carlo based on the fourth-order Trotter expansion: Application to fluoride ion-water cluster. J Chem Phys 2010; 132:144108. [DOI: 10.1063/1.3367724] [Citation(s) in RCA: 35] [Impact Index Per Article: 2.5] [Reference Citation Analysis] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Indexed: 11/15/2022] Open
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29
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Wild DA, Kuwata KT, Wong CK, Lobo JD, Deev A, Schindler TS, Okumura M, Bieske EJ. Infrared Spectra of Mass-Selected Br−−(NH3)n and I−−NH3 Clusters. J Phys Chem A 2010; 114:4762-9. [DOI: 10.1021/jp909237n] [Citation(s) in RCA: 7] [Impact Index Per Article: 0.5] [Reference Citation Analysis] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Indexed: 11/28/2022]
Affiliation(s)
- Duncan A. Wild
- School of Biomedical, Biomolecular & Chemical Sciences, The University of Western Australia, M313, Crawley, 6009, Australia, Chemistry Department, Macalester College, 1600 Grand Avenue, Saint Paul, Minnesota 55105, Arthur Amos Noyes Laboratory of Chemical Physics, Mail Code 127-72, California Institute of Technology, Pasadena, California 91125, School of Chemistry, University of Melbourne, Parkville 3010, Australia
| | - Keith T. Kuwata
- School of Biomedical, Biomolecular & Chemical Sciences, The University of Western Australia, M313, Crawley, 6009, Australia, Chemistry Department, Macalester College, 1600 Grand Avenue, Saint Paul, Minnesota 55105, Arthur Amos Noyes Laboratory of Chemical Physics, Mail Code 127-72, California Institute of Technology, Pasadena, California 91125, School of Chemistry, University of Melbourne, Parkville 3010, Australia
| | - Chi-Kin Wong
- School of Biomedical, Biomolecular & Chemical Sciences, The University of Western Australia, M313, Crawley, 6009, Australia, Chemistry Department, Macalester College, 1600 Grand Avenue, Saint Paul, Minnesota 55105, Arthur Amos Noyes Laboratory of Chemical Physics, Mail Code 127-72, California Institute of Technology, Pasadena, California 91125, School of Chemistry, University of Melbourne, Parkville 3010, Australia
| | - Julio D. Lobo
- School of Biomedical, Biomolecular & Chemical Sciences, The University of Western Australia, M313, Crawley, 6009, Australia, Chemistry Department, Macalester College, 1600 Grand Avenue, Saint Paul, Minnesota 55105, Arthur Amos Noyes Laboratory of Chemical Physics, Mail Code 127-72, California Institute of Technology, Pasadena, California 91125, School of Chemistry, University of Melbourne, Parkville 3010, Australia
| | - Andrei Deev
- School of Biomedical, Biomolecular & Chemical Sciences, The University of Western Australia, M313, Crawley, 6009, Australia, Chemistry Department, Macalester College, 1600 Grand Avenue, Saint Paul, Minnesota 55105, Arthur Amos Noyes Laboratory of Chemical Physics, Mail Code 127-72, California Institute of Technology, Pasadena, California 91125, School of Chemistry, University of Melbourne, Parkville 3010, Australia
| | - Thomas S. Schindler
- School of Biomedical, Biomolecular & Chemical Sciences, The University of Western Australia, M313, Crawley, 6009, Australia, Chemistry Department, Macalester College, 1600 Grand Avenue, Saint Paul, Minnesota 55105, Arthur Amos Noyes Laboratory of Chemical Physics, Mail Code 127-72, California Institute of Technology, Pasadena, California 91125, School of Chemistry, University of Melbourne, Parkville 3010, Australia
| | - Mitchio Okumura
- School of Biomedical, Biomolecular & Chemical Sciences, The University of Western Australia, M313, Crawley, 6009, Australia, Chemistry Department, Macalester College, 1600 Grand Avenue, Saint Paul, Minnesota 55105, Arthur Amos Noyes Laboratory of Chemical Physics, Mail Code 127-72, California Institute of Technology, Pasadena, California 91125, School of Chemistry, University of Melbourne, Parkville 3010, Australia
| | - Evan J. Bieske
- School of Biomedical, Biomolecular & Chemical Sciences, The University of Western Australia, M313, Crawley, 6009, Australia, Chemistry Department, Macalester College, 1600 Grand Avenue, Saint Paul, Minnesota 55105, Arthur Amos Noyes Laboratory of Chemical Physics, Mail Code 127-72, California Institute of Technology, Pasadena, California 91125, School of Chemistry, University of Melbourne, Parkville 3010, Australia
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30
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Elango M, Subramanian V, Sathyamurthy N. Structure and stability of spiro-cyclic water clusters. J CHEM SCI 2009. [DOI: 10.1007/s12039-009-0099-3] [Citation(s) in RCA: 5] [Impact Index Per Article: 0.3] [Reference Citation Analysis] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Indexed: 11/29/2022]
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31
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Plath KL, Takahashi K, Skodje RT, Vaida V. Fundamental and overtone vibrational spectra of gas-phase pyruvic acid. J Phys Chem A 2009; 113:7294-303. [PMID: 19260671 DOI: 10.1021/jp810687t] [Citation(s) in RCA: 59] [Impact Index Per Article: 3.9] [Reference Citation Analysis] [Abstract] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Indexed: 11/30/2022]
Abstract
Pyruvic acid (CH(3)COCOOH) is an important keto acid present in the atmosphere. In this study, the vibrational spectroscopy of gas-phase pyruvic acid has been investigated with special emphasis on the overtone transitions of the OH-stretch, with Delta v(OH) = 2, 4, 5. Assignments were made to fundamental and combination bands in the mid-IR. The two lowest energy rotational conformers of pyruvic acid are clearly observed in the spectrum. The lowest energy conformer possesses an intramolecular hydrogen bond, while the next lowest rotational conformer does not. This difference is clearly seen in the spectra of the OH vibrational overtone transitions, and it is reflected in the anharmonicities of the OH-stretching modes for each conformer. The spectra of the OH-stretching vibration for both conformers were investigated to establish the effect of the hydrogen bond on frequency, intensity, and line width.
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Affiliation(s)
- Kathryn L Plath
- Department of Chemistry and Biochemistry, University of Colorado, Campus Box 215, Boulder, Colorado 80309, USA
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32
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Schneider H, Takahashi K, Skodje RT, Weber JM. Infrared spectra of SF6(-) x HCOOH x Ar(n) (n = 0-2): infrared triggered reaction and Ar-induced reactive inhibition. J Chem Phys 2009; 130:174302. [PMID: 19425771 DOI: 10.1063/1.3125960] [Citation(s) in RCA: 6] [Impact Index Per Article: 0.4] [Reference Citation Analysis] [Abstract] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Indexed: 11/14/2022] Open
Abstract
We present the infrared spectra of SF(6)(-) x HCOOH x Ar(m) (m=0-2) complexes. We find that the binding motif involves a single hydrogen bond between the SF(6)(-) anion and the OH group of the formic acid, with the CH group weakly tethered to a neighboring F atom. Similar to the case of hydrated SF(6)(-), the SF bond involved in the (OH-F) bond is significantly stretched and weakened by the attachment of the HCOOH ligand. The bare complex undergoes reaction upon infrared absorption in the CH/OH stretching region of the formic acid moiety, leading predominantly to the formation of SF(4)(-) + 2HF + CO(2). The reaction can be inhibited by attachment of two Ar atoms. We discuss a likely reaction mechanism in the framework of ab initio calculations, suggesting that reaction proceeds via tunneling through the potential barrier.
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Affiliation(s)
- Holger Schneider
- JILA, NIST, and Department of Chemistry and Biochemistry, University of Colorado at Boulder, Boulder, Colorado 80309, USA
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33
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Gerber RB, Sebek J. Dynamics simulations of atmospherically relevant molecular reactions. INT REV PHYS CHEM 2009. [DOI: 10.1080/01442350903016684] [Citation(s) in RCA: 29] [Impact Index Per Article: 1.9] [Reference Citation Analysis] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Indexed: 10/20/2022]
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34
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Horvath S, McCoy AB, Roscioli JR, Johnson MA. Vibrationally Induced Proton Transfer in F−(H2O) and F−(D2O). J Phys Chem A 2008; 112:12337-44. [DOI: 10.1021/jp805616m] [Citation(s) in RCA: 42] [Impact Index Per Article: 2.6] [Reference Citation Analysis] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Indexed: 11/30/2022]
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35
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36
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Watanabe Y, Maeda S, Ohno K. Intramolecular vibrational frequencies of water clusters (H2O)n (n=2–5): Anharmonic analyses using potential functions based on the scaled hypersphere search method. J Chem Phys 2008; 129:074315. [DOI: 10.1063/1.2973605] [Citation(s) in RCA: 34] [Impact Index Per Article: 2.1] [Reference Citation Analysis] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Indexed: 11/15/2022] Open
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37
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Abstract
The low-lying electronic states of the NiH2 molecule were investigated by using the MCQDPT2 method. In order to accurately describe the strong correlation derived from the nickel 3d9 super-configuration, a set of diffuse secondary 3d' orbitals were included in the active space, yielding a large active space of 12 electrons in 13 orbitals. It is shown that the absolute minimum energy configuration of NiH2 is bent, in agreement with the experimental observation. The global ground state is 1A1 (or A1 in the spin-orbit coupling case), whereas the lowest linear state is 3Deltag (or 3g). Some other cheaper single-configurational and multi-configurational methods were also used to study both states, and their shortcomings are discussed. Our theoretical results suggest that the arrangement of the experimental frequencies of NiH2 and NiD2 may be incorrect.
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Affiliation(s)
- Wenli Zou
- Institute for Theoretical Chemistry, Chemistry and Biochemistry Department, The University of Texas at Austin, Austin, Texas 78712-0165, USA
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38
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Kjaergaard HG, Garden AL, Chaban GM, Gerber RB, Matthews DA, Stanton JF. Calculation of Vibrational Transition Frequencies and Intensities in Water Dimer: Comparison of Different Vibrational Approaches. J Phys Chem A 2008; 112:4324-35. [DOI: 10.1021/jp710066f] [Citation(s) in RCA: 152] [Impact Index Per Article: 9.5] [Reference Citation Analysis] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Indexed: 12/26/2022]
Affiliation(s)
| | | | - Galina M. Chaban
- NASA Ames Research Center, Mail Stop T27B-1, Moffett Field, California 94035-1000
| | - R. Benny Gerber
- Department of Chemistry, University of California, Irvine, California 92697 and Department of Physical Chemistry and The Fritz Haber Research Center, The Hebrew University, Jerusalem 91904, Israel
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39
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Wu DY, Duan S, Liu XM, Xu YC, Jiang YX, Ren B, Xu X, Lin SH, Tian ZQ. Theoretical study of binding interactions and vibrational Raman spectra of water in hydrogen-bonded anionic complexes: (H2O)n- (n = 2 and 3), H2O...X- (X = F, Cl, Br, and I), and H2O...M- (M = Cu, Ag, and Au). J Phys Chem A 2008; 112:1313-21. [PMID: 18215023 DOI: 10.1021/jp0722105] [Citation(s) in RCA: 53] [Impact Index Per Article: 3.3] [Reference Citation Analysis] [Abstract] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Indexed: 12/26/2022]
Abstract
Binding interactions and Raman spectra of water in hydrogen-bonded anionic complexes have been studied by using the hybrid density functional theory method (B3LYP) and ab initio (MP2) method. In order to explore the influence of hydrogen bond interactions and the anionic effect on the Raman intensities of water, model complexes, such as the negatively charged water clusters ((H2O)n-, n = 2 and 3), the water...halide anions (H2O...X-, X = F, Cl, Br, and I), and the water-metal atom anionic complexes (H2O...M-, M = Cu, Ag, and Au), have been employed in the present calculations. These model complexes contained different types of hydrogen bonds, such as O-H...X-, O-H...M-, O-H...O, and O-H...e-. In particular, the last one is a dipole-bound electron involved in the anionic water clusters. Our results showed that there exists a large enhancement in the off-resonance Raman intensities of both the H-O-H bending mode and the hydrogen-bonded O-H stretching mode, and the enhancement factor is more significant for the former than for the latter. The reasons for these spectral properties can be attributed to the strong polarization effect of the proton acceptors (X-, M-, O, and e-) in these hydrogen-bonded complexes. We proposed that the strong Raman signal of the H-O-H bending mode may be used as a fingerprint to address the local microstructures of water molecules in the chemical and biological systems.
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Affiliation(s)
- De-Yin Wu
- Department of Chemistry, College of Chemistry and Chemical Engineering, Xiamen University, Xiamen 361005, Fujian, People Republic of China.
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40
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Yagi K, Hirata S, Hirao K. Efficient configuration selection scheme for vibrational second-order perturbation theory. J Chem Phys 2007; 127:034111. [PMID: 17655435 DOI: 10.1063/1.2748774] [Citation(s) in RCA: 53] [Impact Index Per Article: 3.1] [Reference Citation Analysis] [Abstract] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Indexed: 11/14/2022] Open
Abstract
A fast algorithm of vibrational second-order Moller-Plesset perturbation theory is proposed, enabling a substantial reduction in the number of vibrational self-consistent-field (VSCF) configurations that need to be summed in the calculations. Important configurations are identified a priori by assuming that a reference VSCF wave function is approximated well by harmonic oscillator wave functions and that fifth- and higher-order anharmonicities are negligible. The proposed scheme has reduced the number of VSCF configurations by more than 100 times for formaldehyde, ethylene, and furazan with an error in computed frequencies being not more than a few cm(-1).
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Affiliation(s)
- Kiyoshi Yagi
- Department of Applied Chemistry, School of Engineering, The University of Tokyo, Tokyo 113-8656, Japan
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41
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Anharmonic vibrational spectroscopy calculations with electronic structure potentials: comparison of MP2 and DFT for organic molecules. Theor Chem Acc 2007. [DOI: 10.1007/s00214-007-0299-1] [Citation(s) in RCA: 44] [Impact Index Per Article: 2.6] [Reference Citation Analysis] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Indexed: 10/23/2022]
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42
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Barbera J, Horvath S, Dribinski V, McCoy AB, Lineberger WC. Femtosecond dynamics of Cu(CD3OD). J Chem Phys 2007; 126:084307. [PMID: 17343448 DOI: 10.1063/1.2464103] [Citation(s) in RCA: 5] [Impact Index Per Article: 0.3] [Reference Citation Analysis] [Abstract] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Indexed: 11/15/2022] Open
Abstract
We report the femtosecond nuclear dynamics of Cu(CD3OD) van der Waals clusters, investigated using photodetachment-photoionization spectroscopy. Photodetachment of an electron from Cu-(CD3OD) with a 150 fs, 398 nm laser pulse produces a vibrationally excited neutral complex that undergoes ligand reorientation and dissociation. The dynamics of Cu(CD3OD) on the neutral surface is interrogated by delayed femtosecond resonant two-photon ionization. Analysis of the resulting time-dependent signals indicates that the nascent Cu(CD3OD) complex dissociates on two distinct time scales of 3 and 30 ps. To understand the origins of the observed time scales, complimentary studies were performed. These included measurement of the photoelectron spectrum of Cu-(CD3OD) as well as a series of calculations of the structure and the electronic and vibrational energies of the anion and neutral complexes. Based on the comparisons of the experimental and calculated results for Cu(CD3OD) with those obtained from earlier studies of Cu(H2O), we conclude that the 3 ps time scale reflects the energy transfer from the rotation of CD3OD in the complex to the dissociation coordinate, while the 30 ps time scale reflects the energy transfer from the excited methyl torsion states to the dissociation coordinate.
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Affiliation(s)
- Jack Barbera
- JILA, and Department of Chemistry and Biochemistry, University of Colorado, Boulder, Colorado 80309, USA
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43
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Wild DA, Lenzer T. Structures, energetics, and infrared spectra of the Cl––(H2S)n and Br––(H2S)n anion clusters from ab initio calculations. Phys Chem Chem Phys 2007; 9:5776-84. [DOI: 10.1039/b710111b] [Citation(s) in RCA: 1] [Impact Index Per Article: 0.1] [Reference Citation Analysis] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Indexed: 12/14/2022]
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44
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Loh ZM, Wilson RL, Wild DA, Bieske EJ, Lisy JM, Njegic B, Gordon MS. Infrared Spectra and Ab Initio Calculations for the F-−(CH4)n (n = 1−8) Anion Clusters. J Phys Chem A 2006; 110:13736-43. [PMID: 17181329 DOI: 10.1021/jp0654112] [Citation(s) in RCA: 25] [Impact Index Per Article: 1.4] [Reference Citation Analysis] [Abstract] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Indexed: 11/30/2022]
Abstract
Infrared spectra of mass-selected F- -(CH4)n (n = 1-8) clusters are recorded in the CH stretching region (2500-3100 cm-1). Spectra for the n = 1-3 clusters are interpreted with the aid of ab initio calculations at the MP2/6-311++G(2df 2p) level, which suggest that the CH4 ligands bind to F- by equivalent, linear hydrogen bonds. Anharmonic frequencies for CH4 and F--CH4 are determined using the vibrational self-consistent field method with second-order perturbation theory correction. The n = 1 complex is predicted to have a C3v structure with a single CH group hydrogen bonded to F-. Its spectrum exhibits a parallel band associated with a stretching vibration of the hydrogen-bonded CH group that is red-shifted by 380 cm-1 from the nu1 band of free CH4 and a perpendicular band associated with the asymmetric stretching motion of the nonbonded CH groups, slightly red-shifted from the nu3 band of free CH4. As n increases, additional vibrational bands appear as a result of Fermi resonances between the hydrogen-bonded CH stretching vibrational mode and the 2nu4 overtone and nu2+nu4 combination levels of the methane solvent molecules. For clusters with n < or = 8, it appears that the CH4 molecules are accommodated in the first solvation shell, each being attached to the F- anion by equivalent hydrogen bonds.
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Affiliation(s)
- Z M Loh
- School of Chemistry, The University of Melbourne, Australia 3010
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45
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Abstract
Beginning in the mid-1980s, a number of innovative experimental studies on ionic clusters emerged from the laboratory of Yuan T. Lee combining infrared laser spectroscopy and tandem mass spectrometry. Coupled with modern electronic structure calculations, this research explored many facets of ionic clusters including solvation, structure, and dynamics. These efforts spawned a resurgence in gas-phase cluster spectroscopy. This paper will focus on the major areas of research initiated by the Lee group and how these studies stimulated and influenced others in what is currently a vibrant and growing field.
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Affiliation(s)
- James M Lisy
- Department of Chemistry, University of Illinois, Urbana, Illinois 61801, USA.
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46
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Herbert JM, Head-Gordon M. Charge Penetration and the Origin of Large O−H Vibrational Red-Shifts in Hydrated-Electron Clusters, (H2O)n-. J Am Chem Soc 2006; 128:13932-9. [PMID: 17044721 DOI: 10.1021/ja064949i] [Citation(s) in RCA: 57] [Impact Index Per Article: 3.2] [Reference Citation Analysis] [Abstract] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Indexed: 11/29/2022]
Abstract
The origin of O-H vibrational red-shifts observed experimentally in (H2O)n(-) clusters is analyzed using electronic structure calculations, including natural bond orbital analysis. The red-shifts are shown to arise from significant charge transfer and strong donor-acceptor stabilization between the unpaired electron and O-H sigma* orbitals on a nearby water molecule in a double hydrogen-bond-acceptor ("AA") configuration. The extent of e(-) --> sigma* charge transfer is comparable to the n --> sigma* charge transfer in the most strongly hydrogen-bonded X(-)(H2O) complexes (e.g., X = F, O, OH), even though the latter systems exhibit much larger vibrational red-shifts. In X(-)(H2O), the proton affinity of X(-) induces a low-energy XH...(-)OH diabatic state that becomes accessible in v = 1 of the shared-proton stretch, leading to substantial anharmonicity in this mode. In contrast, the H + (-)OH(H2O)(n-1) diabat of (H2O)n(-) is not energetically accessible; thus, the O-H stretching modes of the AA water are reasonably harmonic, and their red-shifts are less dramatic. Only a small amount of charge penetrates beyond the AA water molecule, even upon vibrational excitation of these AA modes. Implications for modeling of the aqueous electron are discussed.
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Affiliation(s)
- John M Herbert
- Department of Chemistry, University of California, Berkeley, California 94720, USA.
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47
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Odde S, Mhin BJ, Lee KH, Lee HM, Tarakeshwar P, Kim KS. Hydration and Dissociation of Hydrogen Fluoric Acid (HF). J Phys Chem A 2006; 110:7918-24. [PMID: 16789781 DOI: 10.1021/jp060149i] [Citation(s) in RCA: 36] [Impact Index Per Article: 2.0] [Reference Citation Analysis] [Abstract] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Indexed: 11/28/2022]
Abstract
The hydration and dissociation phenomena of HF(H(2)O)(n)() (n < or = 10) clusters have been studied by using both the density functional theory with the 6-311++G[sp] basis set and the Møller-Plesset second-order perturbation theory with the aug-cc-pVDZ+(2s2p/2s) basis set. The structures for n > or = 8 are first reported here. The dissociated form of the hydrogen-fluoric acid in HF(H(2)O)(n) clusters is found to be less stable at 0 K than the undissociated form until n = 10. HF may not be dissociated at 0 K solely by water molecules because the HF H bond is stronger than the OH H bond, against the expectation that the dissociated HF(H(2)O)(n) would be more stable than the undissociated one in the presence of a number of water molecules. The dissociation would be possible for only a fraction of a number of hydrated HF clusters by the Boltzmann distribution at finite temperatures. This is in sharp contrast to other hydrogen halide acids (HCl, HBr, HI) showing the dissociation phenomena at 0 K for n > or = 4. The IR spectra of dissociated and undissociated structures of HF(H(2)O)(n) are compared. The structures and binding energies of HF(H(2)O)(n) are found to be similar to those of (H(2)O)(n+1). It is interesting that HF(H(2)O)(n=5,6,10) are slightly less stable compared with other sizes of clusters, just like the fact that (H(2)O)(n=6,7,11) are slightly less stable. The present study would be useful for the experimental/spectroscopic investigation of not only the dissociation phenomena of HF but also the similarity of the HF-water clusters to the water clusters.
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Affiliation(s)
- Srinivas Odde
- Department of Chemistry, Pai Chai University, Daejeon, Korea
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Roscioli JR, Diken EG, Johnson MA, Horvath S, McCoy AB. Prying Apart a Water Molecule with Anionic H-Bonding: A Comparative Spectroscopic Study of the X-·H2O (X = OH, O, F, Cl, and Br) Binary Complexes in the 600−3800 cm-1 Region. J Phys Chem A 2006; 110:4943-52. [PMID: 16610811 DOI: 10.1021/jp056022v] [Citation(s) in RCA: 147] [Impact Index Per Article: 8.2] [Reference Citation Analysis] [Abstract] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Indexed: 11/28/2022]
Abstract
A detailed picture of the structural distortions suffered by a water molecule in direct contact with small inorganic anions (e.g., X = halide) is emerging from a series of recent vibrational spectroscopy studies of the gas-phase X-.H2O binary complexes. The extended spectral coverage (600-3800 cm(-1)) presently available with tabletop laser systems, when combined with versatile argon "messenger" techniques for acquiring action spectra of cold complexes, now provides a comprehensive survey of how the interaction evolves from an ion-solvent configuration into a three-center, two-electron covalent bond as the proton affinity of the anion increases. We focus on the behavior of H2O in the X-.H2O (X = Br, Cl, F, O, and OH) complexes, which all adopt asymmetric structures where one hydrogen atom is H-bonded to the ion while the other is free. The positions and intensities of the bands clearly reveal the mechanical consequences of both (zero-point) vibrationally averaged and infrared photoinduced excess charge delocalization mediated by intracluster proton transfer (X-.H2O --> HX.OH-). The fundamentals of the shared proton stretch become quite intense, for example, and exhibit extreme red-shifts as the intracluster proton-transfer process becomes available, first in the vibrationally excited states (F-.H2O) and then finally at the zero-point level (OH-.H2O). In the latter case, the loss of the water molecule's independent character is confirmed through the disappearance of the approximately 1600 cm(-1) HOH intramolecular bending transition and the dramatic (>3000 cm(-1)) red-shift of the shared proton stretch. An unexpected manifestation of vibrationally mediated charge transfer is also observed in the low frequency region, where the 2 <-- 0 overtones of the out-of-plane frustrated rotation of the water are remarkably intense in the Cl-.H2O and Br-.H2O spectra. This effect is traced to changes in the charge distribution along the X-.O axis as the shared proton is displaced perpendicular to it, reducing the charge transfer character of the H-bonding interaction and giving rise to a large quadratic contribution to the dipole moment component that is parallel to the bond axis. Thus, all of these systems are found to exhibit distinct spectral characteristics that can be directly traced to the crucial role of vibrationally mediated charge redistribution within the complex.
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Affiliation(s)
- Joseph R Roscioli
- Sterling Chemistry Laboratories, Yale University, P.O. Box 208107, New Haven, Connecticut 06520, USA
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McCoy AB. Diffusion Monte Carlo approaches for investigating the structure and vibrational spectra of fluxional systems. INT REV PHYS CHEM 2006. [DOI: 10.1080/01442350600679347] [Citation(s) in RCA: 97] [Impact Index Per Article: 5.4] [Reference Citation Analysis] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Indexed: 10/24/2022]
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Theoretical study of anharmonic vibrational spectra of HNO3, HNO3–H2O, HNO4: Fundamental, overtone and combination excitations. Chem Phys 2005. [DOI: 10.1016/j.chemphys.2005.01.012] [Citation(s) in RCA: 52] [Impact Index Per Article: 2.7] [Reference Citation Analysis] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Indexed: 11/20/2022]
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