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Sinitsa AS, Polynskaya YG, Matsokin NA, Kedalo YM, Knizhnik AA, Popov AM. Formation of the icosahedral C 60 fullerene via migration of single sp atoms and annihilation of sp-atom pairs. Phys Chem Chem Phys 2024; 26:21905-21911. [PMID: 39105668 DOI: 10.1039/d4cp02490g] [Citation(s) in RCA: 0] [Impact Index Per Article: 0] [Reference Citation Analysis] [Abstract] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Indexed: 08/07/2024]
Abstract
The disappearance of sp2 structural defects during abundant fullerene isomer formation is considered within the framework of the atomistic mechanism with participation of carbon atoms with sp hybridization. The study is carried out using the example of the icosahedral C60-Ih fullerene formation from the appropriate C58-C2v fullerene with a 7-ring. In this case the studied atomistic mechanism includes the following stages: (1) insertion of single carbon atoms into the fullerene from carbon vapor as an sp-atom instead of or above a bond, (2) directional migration of the sp-atom positions towards the 7-ring with decrease of energy, and (3) meeting of two sp atoms near the 7-ring with annihilation of the sp-atom pair and formation of the sp2 structure of the C60-Ih fullerene. The probabilities of all possible sp-atom positions on the appropriate C58-C2v fullerene shell are estimated as a function of temperature using the total energies of these positions obtained by spin-polarized density functional theory calculations using the PBE functional. Based on these estimations, it is shown that formation of the C60-Ih isomer is the most probable within the framework of the considered mechanism relative to other C60 isomers. The energetics of sp-atom pair annihilation in the formation of the C60-Ih isomer is also studied via DFT calculations. The advantages of the considered atomistic mechanism of the abundant fullerene isomer formation are discussed.
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Affiliation(s)
- Alexander S Sinitsa
- Kintech Lab Ltd., 3rd Khoroshevskaya Street 12, Moscow 123298, Russia.
- National Research Centre "Kurchatov Institute", Kurchatov Square 1, Moscow 123182, Russia
| | | | - Nikita A Matsokin
- Kintech Lab Ltd., 3rd Khoroshevskaya Street 12, Moscow 123298, Russia.
| | - Yegor M Kedalo
- Kintech Lab Ltd., 3rd Khoroshevskaya Street 12, Moscow 123298, Russia.
- National Research Centre "Kurchatov Institute", Kurchatov Square 1, Moscow 123182, Russia
- Moscow Institute of Physics and Technology, 9 Institutskiy per., Dolgoprudny 141700, Russia
| | - Andrey A Knizhnik
- Kintech Lab Ltd., 3rd Khoroshevskaya Street 12, Moscow 123298, Russia.
- National Research Centre "Kurchatov Institute", Kurchatov Square 1, Moscow 123182, Russia
| | - Andrey M Popov
- Institute of Spectroscopy of Russian Academy of Sciences, Fizicheskaya Street 5, Troitsk, Moscow 108840, Russia
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2
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Liu XY, Huang SC, Hsieh YT, Lu SI, Wang HH, Wang CC, Chuang YC. Detection of nitrofurazone with metal-organic frameworks and reduced graphene oxide composites: insights from molecular dynamics simulations. Mikrochim Acta 2023; 190:246. [PMID: 37256373 DOI: 10.1007/s00604-023-05829-5] [Citation(s) in RCA: 0] [Impact Index Per Article: 0] [Reference Citation Analysis] [Abstract] [Key Words] [Journal Information] [Subscribe] [Scholar Register] [Received: 03/17/2023] [Accepted: 05/04/2023] [Indexed: 06/01/2023]
Abstract
Two-dimensional metal-organic framework (MOF) composites were produced by incorporating Fe-MOFs into reduced graphene oxide (rGO) nanosheets to form Fe-MOF/rGO composites by hydrothermal synthesis. SEM, TEM, XRD, XPS, and measurements of contact angles were used to characterize the composites. TEM studies revealed that the rod-like-shaped Fe-MOFs were extensively dispersed on the rGO sheets. Incorporating Fe-MOF into rGO significantly improves performance due to the large surface area, chemical stability, and high electrical conductivity. The response signals for the electrochemical sensing performance of Fe-MOF/rGO-modified electrodes to nitrofurazone (NFZ) were significantly enhanced. Differential pulse voltammetry was used to detect the NFZ, and the MOF/rGO sensor possesses a lower detection limit (0.77μM) with two dynamic ranges from 0.6-60 to 128-499.3 μM and high sensitivity (1.909 μA·mM-1·cm-2). Moreover, the anti-interference properties of the sensor were quite reproducible and stable. To understand the mechanism responsible for the enhanced sensing performance of the composite, grand canonical Monte Carlo calculations were performed for Fe-MOF/rGO composites with five unit cells of Fe-MOF and four layers of rGO. We attributed the improvement to the fact that the interface between the Fe-MOF and rGO absorbed increased NFZ molecules. The findings reported herein confirm that such Fe-MOF/rGO composites have significantly improved electrochemical performance and practical applicability of sensing nitrofurazone.
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Affiliation(s)
- Xiu-Yu Liu
- Department of Chemistry, Soochow University, Taipei City, 11102, Taiwan
| | - Ssu-Chia Huang
- Department of Chemistry, Soochow University, Taipei City, 11102, Taiwan
| | - Yi-Ting Hsieh
- Department of Chemistry, Soochow University, Taipei City, 11102, Taiwan.
| | - Shih-I Lu
- Department of Chemistry, Soochow University, Taipei City, 11102, Taiwan.
| | - Hsaio-Hsun Wang
- Department of Chemistry, Soochow University, Taipei City, 11102, Taiwan
| | - Chih-Chieh Wang
- Department of Chemistry, Soochow University, Taipei City, 11102, Taiwan.
| | - Yu-Chun Chuang
- National Synchrotron Radiation Research Center, Hsinchu, 30076, Taiwan
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Owen AN, Esselman BJ, Woods RC, McMahon RJ. Carbon Condensation via [4 + 2] Cycloaddition of Highly Unsaturated Carbon Chains. J Phys Chem A 2023; 127:4277-4290. [PMID: 37146283 DOI: 10.1021/acs.jpca.3c00617] [Citation(s) in RCA: 0] [Impact Index Per Article: 0] [Reference Citation Analysis] [Abstract] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Indexed: 05/07/2023]
Abstract
We present computational studies of reaction pathways for alkyne/polyyne dimerization that represent plausible early steps in mechanisms for carbon condensation. A previous computational study of the ring coalescence and annealing model of C60 formation revealed that a 1,4-didehydrobenzocyclobutadiene intermediate (p-benzyne derivative) has little to no barrier to undergoing an unproductive retro-Bergman cyclization, which brings into question the relevance of that reaction pathway. The current study investigates an alternative model, which proceeds through an initial [4 + 2] cycloaddition instead of a [2 + 2] cycloaddition. In this pathway, the problematic intermediate is avoided, with the reaction proceeding via a (potentially) more kinetically stable tetradehydronaphthalene derivative. The computational studies of the [2 + 2] and [4 + 2] model systems, with increasing alkyne substitutions, reveal that the para-benzyne diradical of the [4 + 2] pathway has a significantly greater barrier to ring opening than the analogous intermediates of the [2 + 2] pathway and that alkyne substitution has little effect on this important barrier. These studies employ spin-flip, time-dependent density functional theory (SF-TDDFT) to provide suitable treatment of open-shell diradical intermediates.
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Affiliation(s)
- Andrew N Owen
- Department of Chemistry, University of Wisconsin-Madison, 1101 University Avenue, Madison, Wisconsin 53706, United States
| | - Brian J Esselman
- Department of Chemistry, University of Wisconsin-Madison, 1101 University Avenue, Madison, Wisconsin 53706, United States
| | - R Claude Woods
- Department of Chemistry, University of Wisconsin-Madison, 1101 University Avenue, Madison, Wisconsin 53706, United States
| | - Robert J McMahon
- Department of Chemistry, University of Wisconsin-Madison, 1101 University Avenue, Madison, Wisconsin 53706, United States
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Paukov M, Kramberger C, Begichev I, Kharlamova M, Burdanova M. Functionalized Fullerenes and Their Applications in Electrochemistry, Solar Cells, and Nanoelectronics. MATERIALS (BASEL, SWITZERLAND) 2023; 16:1276. [PMID: 36770286 PMCID: PMC9919315 DOI: 10.3390/ma16031276] [Citation(s) in RCA: 8] [Impact Index Per Article: 8.0] [Reference Citation Analysis] [Abstract] [Key Words] [Track Full Text] [Figures] [Subscribe] [Scholar Register] [Received: 12/15/2022] [Revised: 01/09/2023] [Accepted: 01/30/2023] [Indexed: 06/18/2023]
Abstract
Carbon-based nanomaterials have rapidly advanced over the last few decades. Fullerenes, carbon nanotubes, graphene and its derivatives, graphene oxide, nanodiamonds, and carbon-based quantum dots have been developed and intensively studied. Among them, fullerenes have attracted increasing research attention due to their unique chemical and physical properties, which have great potential in a wide range of applications. In this article, we offer a comprehensive review of recent progress in the synthesis and the chemical and physical properties of fullerenes and related composites. The review begins with the introduction of various methods for the synthesis of functionalized fullerenes. A discussion then follows on their chemical and physical properties. Thereafter, various intriguing applications, such as using carbon nanotubes as nanoreactors for fullerene chemical reactions, are highlighted. Finally, this review concludes with a summary of future research, major challenges to be met, and possible solutions.
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Affiliation(s)
- Maksim Paukov
- Center for Photonics and 2D Materials, Moscow Institute of Physics and Technology, 9 Institutsky Lane, 141700 Dolgoprudny, Russia
| | - Christian Kramberger
- Faculty of Physics, University of Vienna, Strudlhofgasse 4, 1090 Vienna, Austria
| | - Ilia Begichev
- Center for Photonics and 2D Materials, Moscow Institute of Physics and Technology, 9 Institutsky Lane, 141700 Dolgoprudny, Russia
- Center for Photonics and Quantum Materials, Skolkovo Institute of Science and Technology, 143026 Moscow, Russia
| | - Marianna Kharlamova
- Centre for Advanced Material Application (CEMEA), Slovak Academy of Sciences, Dúbravská cesta 5807/9, 854 11 Bratislava, Slovakia
- Institute of Materials Chemistry, Vienna University of Technology, Getreidemarkt 9-BC-2, 1060 Vienna, Austria
- Laboratory of Nanobiotechnologies, Moscow Institute of Physics and Technology, Institutskii Pereulok 9, 141700 Dolgoprudny, Russia
| | - Maria Burdanova
- Center for Photonics and 2D Materials, Moscow Institute of Physics and Technology, 9 Institutsky Lane, 141700 Dolgoprudny, Russia
- Institute of Solid State Physics, Russian Academy of Sciences, 142432 Chernogolovka, Russia
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Mitchell I, Qiu L, Page A, Lamb LD, Ding F. Role of Graphitic Bowls in Temperature Dependent Fullerene Formation. J Phys Chem A 2022; 126:8955-8963. [DOI: 10.1021/acs.jpca.2c05855] [Citation(s) in RCA: 0] [Impact Index Per Article: 0] [Reference Citation Analysis] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Indexed: 12/05/2022]
Affiliation(s)
- Izaac Mitchell
- Center for Multidimensional Carbon Materials, Institute for Basic Science (IBS), Ulsan44919, Republic of Korea
- School of Materials Science and Engineering, Ulsan National Institute of Science and Technology, Ulsan44919, South Korea
| | - Lu Qiu
- Center for Multidimensional Carbon Materials, Institute for Basic Science (IBS), Ulsan44919, Republic of Korea
- School of Materials Science and Engineering, Ulsan National Institute of Science and Technology, Ulsan44919, South Korea
| | - Alister Page
- School of Environmental and Life Sciences, The University of Newcastle, Callaghan, New South Wales2308, Australia
| | - Lowell D. Lamb
- Broadcom, Ltd., 1320 Ridder Park Drive, San Jose, California95131, United States
| | - Feng Ding
- Center for Multidimensional Carbon Materials, Institute for Basic Science (IBS), Ulsan44919, Republic of Korea
- School of Materials Science and Engineering, Ulsan National Institute of Science and Technology, Ulsan44919, South Korea
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6
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Li M, Zhao R, Dang J, Zhao X. Theoretical study on the stabilities, electronic structures, and reaction and formation mechanisms of fullerenes and endohedral metallofullerenes. Coord Chem Rev 2022. [DOI: 10.1016/j.ccr.2022.214762] [Citation(s) in RCA: 1] [Impact Index Per Article: 0.5] [Reference Citation Analysis] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Indexed: 12/31/2022]
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Thakur AK, Muralidharan K, Zega TJ, Ziurys LM. A nanometric window on fullerene formation in the interstellar medium: insights from molecular dynamics studies. J Chem Phys 2022; 156:154704. [DOI: 10.1063/5.0069166] [Citation(s) in RCA: 0] [Impact Index Per Article: 0] [Reference Citation Analysis] [Abstract] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Indexed: 11/14/2022] Open
Abstract
Understanding the fundamental mechanisms that underlie the synthesis of fullerene molecules in the interstellar medium (ISM) and in the environments of astrophysical objects is an open question. In this regard, using classical molecular dynamics, we demonstrate the possibility of in situ formation of fullerene molecules such as from graphite, which is known to occur in the ISM, in particular circumstellar environments . Specifically, when graphite is subjected to thermal and mechanical stimuli that are typical of circumstellar shells, we find that the graphite sheet edges undergo significant restructuring and curling, leading to edge-induced interlayer-interactions, and formation of mechanically strained five-membered-ring structural units. These units serve as precursors for the formation of fullerene structures such as pristine and metastable molecules. The pathways leading to molecular formation consist of a series of steps that involve bond-breakage and subsequent local rearrangement of atoms, with the activation energy barriers of the rate-limiting step(s) being comparable to the energetics of Stone-Wales rearrangement reactions. The identified chemical pathways provide fundamental insights into the mechanisms that underlie formation. Moreover, they clearly demonstrate that top-down synthesis of from graphitic sources is a viable synthesis route at conditions pertaining to circumstellar matter.
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Affiliation(s)
| | - Krishna Muralidharan
- Materials Science and Engineering, The University of Arizona, United States of America
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Sakhraoui T, Karlický F. DFTB investigations of the electronic and magnetic properties of fluorographene with vacancies and with adsorbed chemical groups. Phys Chem Chem Phys 2022; 24:3312-3321. [PMID: 35050289 DOI: 10.1039/d1cp00995h] [Citation(s) in RCA: 1] [Impact Index Per Article: 0.5] [Reference Citation Analysis] [Abstract] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Indexed: 02/03/2023]
Abstract
The electronic and magnetic properties of fluorographene (CF) in the presence of F-vacancy defects and/or chemical groups (-OH, -CN, or -NH2) were computationally investigated within the framework of the density functional tight-binding (DFTB) method. The current method parameterization allowed us to perform accurate electronic structure calculations (at the ab initio level of many-body methods in the particular case of CF) for hundreds of atoms in the computational cell. We show that the F-vacancy and/or chemical groups influence the magnetic structure, which depends on the number of defects and their distribution between the two sides of the graphene plane. Interestingly, we pointed out a possibility of imprinting local magnetism not only via F-vacancy and -OH combinations, but also using F-vacancies and -CN or -NH2 groups. In such structures, the magnetic ordering and the total magnetic moments depend on their adsorption sites and their presence in the same or on opposite sides of the graphene plane. We devote particular attention to the interacting chemical group with the F-vacancies. The interaction between the adsorbed chemical group and the unpaired spins associated with the F-vacancies in CF gives rise to interesting magnetic structures. Finally, the zigzag-like direction is shown as the most preferred for the defluorination of CF. Stable ferrimagnetic zigzag chains with interesting properties are considered to be basic magnetic features in perturbed CF. Our work provides new guidelines for engineering multifunctional spintronic components using CF as a base material. We believe, in particular, that the magnetism is predominantly controlled by the F-vacancies, and the ferromagnet can ideally be regulated via the adsorption of a chemical group on a defective CF supercell.
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Affiliation(s)
- Taoufik Sakhraoui
- Department of Physics, Faculty of Science, University of Ostrava, 701 03 Ostrava, Czech Republic.
| | - František Karlický
- Department of Physics, Faculty of Science, University of Ostrava, 701 03 Ostrava, Czech Republic.
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9
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Synthesis of Fullerenes from a Nonaromatic Chloroform through a Newly Developed Ultrahigh-Temperature Flash Vacuum Pyrolysis Apparatus. NANOMATERIALS 2021; 11:nano11113033. [PMID: 34835796 PMCID: PMC8618344 DOI: 10.3390/nano11113033] [Citation(s) in RCA: 2] [Impact Index Per Article: 0.7] [Reference Citation Analysis] [Abstract] [Key Words] [Track Full Text] [Download PDF] [Figures] [Subscribe] [Scholar Register] [Received: 10/14/2021] [Revised: 11/08/2021] [Accepted: 11/10/2021] [Indexed: 12/21/2022]
Abstract
The flash vacuum pyrolysis (FVP) technique is useful for preparing curved polycyclic aromatic compounds (PAHs) and caged nanocarbon molecules, such as the well-known corannulene and fullerene C60. However, the operating temperature of the traditional FVP apparatus is limited to ~1250 °C, which is not sufficient to overcome the high energy barriers of some reactions. Herein, we report an ultrahigh-temperature FVP (UT-FVP) apparatus with a controllable operating temperature of up to 2500 °C to synthesize fullerene C60 from a nonaromatic single carbon reactant, i.e., chloroform, at 1350 °C or above. Fullerene C60 cannot be obtained from CHCl3 using the traditional FVP apparatus because of the limitation of the reaction temperature. The significant improvements in the UT-FVP apparatus, compared to the traditional FVP apparatus, were the replacement of the quartz tube with a graphite tube and the direct heating of the graphite tube by impedance heating instead of indirect heating of the quartz tube using an electric furnace. Because of the higher temperature range, UT-FVP can not only synthesize fullerene C60 from single carbon nonaromatic reactants but sublimate some high-molecular-weight compounds to synthesize larger curved PAHs in the future.
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Jin H, Xing L, Yang J, Zhou Z, Qi F, Farooq A. Continuous Butadiyne Addition to Propargyl: A Radical-Efficient Pathway for Polycyclic Aromatic Hydrocarbons. J Phys Chem Lett 2021; 12:8109-8114. [PMID: 34410145 DOI: 10.1021/acs.jpclett.1c02062] [Citation(s) in RCA: 8] [Impact Index Per Article: 2.7] [Reference Citation Analysis] [Abstract] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Indexed: 06/13/2023]
Abstract
Polycyclic aromatic hydrocarbons (PAHs) play a crucial role in soot inception, interstellar evolution, and nanomaterial synthesis. Although several mechanisms, such as hydrogen-abstraction acetylene/vinylacetylene addition, have previously been proposed, PAH formation and growth are not yet fully understood. We propose an alternate PAH growth mechanism wherein propargyl radical reacts with butadiyne to form larger radicals containing newly fused aromatic rings. Butadiyne is an important intermediate in hydrocarbon oxidation and carbon rich stars, while propargyl is one of the most important resonantly stabilized radicals that persists for long times. Our proposed mechanism is validated by quantum chemical calculations, elementary reaction experiments, laminar flame analysis, and kinetic modeling. Our findings challenge the conventional wisdom that radical site regeneration, being central to PAH growth, requires sequential hydrogen elimination and/or abstraction. In our proposed mechanism, PAH growth does not depend on abundant free radical consumption, and could, therefore, help explain carbonaceous nanoparticle coalescence in radical-deficient reaction environments.
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Affiliation(s)
- Hanfeng Jin
- Clean Combustion Research Center, King Abdullah University of Science and Technology, Thuwal 23955-6900, Saudi Arabia
| | - Lili Xing
- Energy and Power Engineering Institute, Henan University of Science and Technology, Luoyang, Henan 471003, China
| | - Jiuzhong Yang
- National Synchrotron Radiation Laboratory, University of Science and Technology of China, Hefei, Anhui 230029, China
| | - Zhongyue Zhou
- Key Laboratory for Power Machinery and Engineering of MOE, Shanghai Jiao Tong University, Shanghai 200240, China
| | - Fei Qi
- Key Laboratory for Power Machinery and Engineering of MOE, Shanghai Jiao Tong University, Shanghai 200240, China
| | - Aamir Farooq
- Clean Combustion Research Center, King Abdullah University of Science and Technology, Thuwal 23955-6900, Saudi Arabia
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Mitchell I, Qiu L, Lamb LD, Ding F. High Temperature Accelerated Stone-Wales Transformation and the Threshold Temperature of IPR-C 60 Formation. J Phys Chem A 2021; 125:4548-4557. [PMID: 34032443 DOI: 10.1021/acs.jpca.1c02151] [Citation(s) in RCA: 0] [Impact Index Per Article: 0] [Reference Citation Analysis] [Abstract] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Indexed: 11/29/2022]
Abstract
The Stone-Wales bond rotation isomerization of nonicosahedral C60 (C2v-C60) into isolated-pentagon rule following icosahedral C60 (Ih-C60 or IPR-C60) is a limiting step in the synthesis of Ih-C60. However, extensive previous studies indicate that the potential energy barrier of the Stone-Wales bond rotation is between 6 and 8 eV, extremely high to allow for bond rotation at the temperatures used to produce fullerenes conventionally. This is also despite data indicating a possible fullerene road mechanism that necessitates low-temperature annealing. However, these previous investigations often have limiting factors, such as using the harmonic approximation to determine free energies at high temperatures or considering only the reverse Ih-C60 to C2v-C60 transition as a basis. Indeed, when the difference in energy between Ih-C60 and C2v-C60 is accounted for, this barrier is generally reduced by ∼1.5 eV. Thus, utilizing the recently developed density functional tight binding metadynamics (DFTB-MTD) interface, the effects of temperature on the bond rotation in the conversion of C2v-C60 to Ih-C60 have been investigated. We found that Stone-Wales bond rotations are complex processes with both in-plane and out-of-plane transition states, and which transition path dominates depends on temperature. Our results clearly show that at temperatures of 2000 K, the free energy for a C2v-C60 to Ih-C60 transition is only ∼4.21 eV and further reduces to ∼3.77 eV at 3000 K. This translates to transition times of ∼971 μs at 2000 K and ∼34 ns at 3000 K, indicating that defect healing is a fast process at temperatures typical of arc jet or laser ablation experiments. Conversely, below ∼2000 K, bond rotation becomes prohibitively slow, putting a lower threshold limit on the temperature of fullerene formation and subsequent annealing.
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Affiliation(s)
- Izaac Mitchell
- Center for Multidimensional Carbon Materials, Institute for Basic Science (IBS), Ulsan 44919, Republic of Korea.,School of Materials Science and Engineering, Ulsan National Institute of Science and Technology, Ulsan 44919, Republic of Korea
| | - Lu Qiu
- Center for Multidimensional Carbon Materials, Institute for Basic Science (IBS), Ulsan 44919, Republic of Korea.,School of Materials Science and Engineering, Ulsan National Institute of Science and Technology, Ulsan 44919, Republic of Korea
| | - Lowell D Lamb
- Broadcom Inc., 1320 Ridder Park Drive, San Jose, California 95131, United States
| | - Feng Ding
- Center for Multidimensional Carbon Materials, Institute for Basic Science (IBS), Ulsan 44919, Republic of Korea.,School of Materials Science and Engineering, Ulsan National Institute of Science and Technology, Ulsan 44919, Republic of Korea
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Heuser B, Mikkelsen KV, Avery JE. Simulating fullerene polyhedral formation from planar precursors. Phys Chem Chem Phys 2021; 23:6561-6573. [PMID: 33704274 DOI: 10.1039/d0cp04901h] [Citation(s) in RCA: 0] [Impact Index Per Article: 0] [Reference Citation Analysis] [Abstract] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Indexed: 11/21/2022]
Abstract
The synthesis path of the C60-Buckyball fullerene from a planar precursor developed by Scott et al. [Science, 2002, 295, 5559] is investigated with density functional theory (DFT) methods. Various theoretically possible closing paths are analysed with respect to structural and energetic properties. The initial geometries were obtained by geometric interpolation of a cardboard-like model comprising rigid rings connected by hinges, which were then fully optimized with a selection of DFT-functionals. Analysis of the fully optimised geometries shows remarkable stability of face planarity, bond lengths and bond angles for all studied geometries, indicating soundness of the "cardboard with hinges"-model for approximating reaction paths for molecules of this type. This raises hope for development of a force field description of fullerene precursor molecules that can aid in discovery and analysis of good precursor candidates for rational synthesis of new fullerenes.
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Affiliation(s)
- Benjamin Heuser
- Niels Bohr Institute, University of Copenhagen, Blegdamsvej 17, 2100 Copenhagen Ø, Denmark
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13
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Waite SL, Karton A, Chan B, Page AJ. Thermochemical stabilities of giant fullerenes using density functional tight binding theory and isodesmic-type reactions. J Comput Chem 2021; 42:222-230. [PMID: 33219554 DOI: 10.1002/jcc.26449] [Citation(s) in RCA: 4] [Impact Index Per Article: 1.3] [Reference Citation Analysis] [Abstract] [Key Words] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Received: 09/15/2020] [Revised: 10/22/2020] [Accepted: 10/25/2020] [Indexed: 12/24/2022]
Abstract
We present a systematic assessment of the density functional tight binding (DFTB) method for calculating heats of formation of fullerenes with isodesmic-type reaction schemes. We show that DFTB3-D/3ob can accurately predict Δf H values of the 1812 structural isomers of C60 , reproduce subtle trends in Δf H values for 24 isolated pentagon rule (IPR) isomers of C84 , and predict Δf H values of giant fullerenes that are in effectively exact agreement with benchmark DSD-PBEP86/def2-QZVPP calculations. For fullerenes up to C320 , DFTB Δf H values are within 1.0 kJ mol-1 of DSD-PBEP86/def2-QZVPP values per carbon atom, and on a per carbon atom basis DFTB3-D/3ob yields exactly the same numerical trend of (Δf H [per carbon] = 722n-0.72 + 5.2 kJ mol-1 ). DFTB3-D/3ob is therefore an accurate replacement for high-level DHDFT and composite thermochemical methods in predicting of thermochemical stabilities of giant fullerenes and analogous nanocarbon architectures.
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Affiliation(s)
- Simone L Waite
- School of Environmental and Life Sciences, The University of Newcastle, Callaghan, New South Wales, Australia
| | - Amir Karton
- School of Molecular Sciences, University of Western Australia, Perth, Western Australia, Australia
| | - Bun Chan
- Graduate School of Engineering, Nagasaki University, Nagasaki, Japan
| | - Alister J Page
- School of Environmental and Life Sciences, The University of Newcastle, Callaghan, New South Wales, Australia
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14
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Fuertes-Espinosa C, Pujals M, Ribas X. Supramolecular Purification and Regioselective Functionalization of Fullerenes and Endohedral Metallofullerenes. Chem 2020. [DOI: 10.1016/j.chempr.2020.11.003] [Citation(s) in RCA: 9] [Impact Index Per Article: 2.3] [Reference Citation Analysis] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Indexed: 10/22/2022]
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15
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Xu H, Wu B, Gan LH. Molecular dynamics simulation of the coalescence behavior of small carbon clusters at high temperature. Chem Phys 2020. [DOI: 10.1016/j.chemphys.2020.110931] [Citation(s) in RCA: 0] [Impact Index Per Article: 0] [Reference Citation Analysis] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Indexed: 10/23/2022]
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16
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Palacios-Rivera R, Malaspina DC, Tessler N, Solomeshch O, Faraudo J, Barrena E, Ocal C. Surface specificity and mechanistic pathway of de-fluorination of C 60F 48 on coinage metals. NANOSCALE ADVANCES 2020; 2:4529-4538. [PMID: 36132938 PMCID: PMC9419620 DOI: 10.1039/d0na00513d] [Citation(s) in RCA: 1] [Impact Index Per Article: 0.3] [Reference Citation Analysis] [Abstract] [Grants] [Track Full Text] [Download PDF] [Figures] [Subscribe] [Scholar Register] [Received: 06/23/2020] [Accepted: 08/31/2020] [Indexed: 06/16/2023]
Abstract
We provide experimental and theoretical understanding on fundamental processes taking place at room temperature when a fluorinated fullerene dopant gets close to a metal surface. By employing scanning tunneling microscopy and photoelectron spectroscopies, we demonstrate that the on-surface integrity of C60F48 depends on the interaction with the particular metal it approaches. Whereas on Au(111) the molecule preserves its chemical structure, on more reactive surfaces such as Cu(111) and Ni(111), molecules interacting with the bare metal surface lose the halogen atoms and transform to C60. Though fluorine-metal bonding can be detected depending on the molecular surface density, no ordered fluorine structures are observed. We show the implications of the metal-dependent de-fluorination in the electronic structure of the molecules and the energy alignment at the molecule-metal interface. Molecular dynamics simulations with ReaxFF reactive force field corroborate the experimental facts and provide a detailed mechanistic picture of the surface-induced de-fluorination, which involves the rotation of the molecule on the surface. Outstandingly, a thermodynamic analysis indicates that the effect of the metal surface is lowering and diminishing the energy barrier for C-F cleave, demonstrating the catalytic role of the surface. The present study contributes to in-depth knowledge of the mechanisms that affect the degree of stability of chemical species on surfaces, which is essential to advance our understanding of the chemical reactivity of metals and their role in on-surface chemical reactions.
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Affiliation(s)
- Rogger Palacios-Rivera
- Institut de Ciència de Materials de Barcelona (ICMAB-CSIC), Campus UAB Bellaterra E-08193 Barcelona Spain
| | - David C Malaspina
- Institut de Ciència de Materials de Barcelona (ICMAB-CSIC), Campus UAB Bellaterra E-08193 Barcelona Spain
| | - Nir Tessler
- Electrical Engineering Department, Nanoelectronic Center, Technion Haifa 32000 Israel
| | - Olga Solomeshch
- Electrical Engineering Department, Nanoelectronic Center, Technion Haifa 32000 Israel
| | - Jordi Faraudo
- Institut de Ciència de Materials de Barcelona (ICMAB-CSIC), Campus UAB Bellaterra E-08193 Barcelona Spain
| | - Esther Barrena
- Institut de Ciència de Materials de Barcelona (ICMAB-CSIC), Campus UAB Bellaterra E-08193 Barcelona Spain
| | - Carmen Ocal
- Institut de Ciència de Materials de Barcelona (ICMAB-CSIC), Campus UAB Bellaterra E-08193 Barcelona Spain
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17
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Chan B. Fullerene Thermochemical Stability: Accurate Heats of Formation for Small Fullerenes, the Importance of Structural Deformation on Reactivity, and the Special Stability of C 60. J Phys Chem A 2020; 124:6688-6698. [PMID: 32786665 DOI: 10.1021/acs.jpca.0c04732] [Citation(s) in RCA: 14] [Impact Index Per Article: 3.5] [Reference Citation Analysis] [Abstract] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Indexed: 02/07/2023]
Abstract
We have used quantum chemistry computations, in conjunction with isodesmic-type reactions, to obtain accurate heats of formation (HoFs) for the small fullerenes C20 (2358.2 ± 8.0 kJ mol-1), C24 (2566.2 ± 7.6), and the lowest-energy isomers of C32 (2461.1 ± 15.4), C42 (2629.0 ± 20.5), and C54 (2686.2 ± 25.3). As part of this endeavor, we have also obtained accurate HoFs for several medium-sized molecules, namely 216.6 ± 1.4 for fulvene, 375.5 ± 1.5 for pentalene, 670.8 ± 2.9 for acepentalene, and 262.7 ± 2.5 for acenaphthylene. We combine the energies of the small fullerenes and previously obtained energies for larger fullerenes (from C60 to C6000) into a full picture of fullerene thermochemical stability. In general, the per-carbon energies can be reasonably approximated by the "R+D" model that we have previously developed [Chan et al. J. Chem. Theory Comput. 2019, 15, 1255-1264], which takes into account Resonance and structural Deformation factors. In a case study on C54, we find that most of the high-deformation-energy atoms correspond to the sites of the C-Cl bond in the experimentally captured C54Cl8. In another case study, we find that C60 has the lowest value for the maximum local-deformation energy when compared with similar-sized fullerenes, which is consistent with its "special stability". These results are indicative of structural deformation playing an important role in the reactivity of fullerenes.
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Affiliation(s)
- Bun Chan
- Graduate School of Engineering, Nagasaki University, Bunkyo 1-14, Nagasaki-shi, Nagasaki 852-8521, Japan
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18
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Skeletal Rearrangements of the C240 Fullerene: Efficient Topological Descriptors for Monitoring Stone–Wales Transformations. MATHEMATICS 2020. [DOI: 10.3390/math8060968] [Citation(s) in RCA: 11] [Impact Index Per Article: 2.8] [Reference Citation Analysis] [Abstract] [Track Full Text] [Subscribe] [Scholar Register] [Indexed: 01/03/2023]
Abstract
Stone–Wales rearrangements of the fullerene surface are an uncharted field in theoretical chemistry. Here, we study them on the example of the giant icosahedral fullerene C240 to demonstrate the complex chemical mechanisms emerging on its carbon skeleton. The Stone–Wales transformations of C240 can produce the defected isomers containing heptagons, extra pentagons and other unordinary rings. Their formations have been described in terms of (i) quantum-chemically calculated energetic, molecular, and geometric parameters; and (ii) topological indices. We have found the correlations between the quantities from the two sets that point out the role of long-range topological defects in governing the formation and the chemical reactivity of fullerene molecules.
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19
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Miyamoto K, Narita S, Masumoto Y, Hashishin T, Osawa T, Kimura M, Ochiai M, Uchiyama M. Room-temperature chemical synthesis of C 2. Nat Commun 2020; 11:2134. [PMID: 32358541 PMCID: PMC7195449 DOI: 10.1038/s41467-020-16025-x] [Citation(s) in RCA: 14] [Impact Index Per Article: 3.5] [Reference Citation Analysis] [Abstract] [Key Words] [Grants] [Track Full Text] [Download PDF] [Figures] [Journal Information] [Subscribe] [Scholar Register] [Received: 08/13/2019] [Accepted: 04/02/2020] [Indexed: 11/09/2022] Open
Abstract
Diatomic carbon (C2) is historically an elusive chemical species. It has long been believed that the generation of C2 requires extremely high physical energy, such as an electric carbon arc or multiple photon excitation, and so it has been the general consensus that the inherent nature of C2 in the ground state is experimentally inaccessible. Here, we present the chemical synthesis of C2 from a hypervalent alkynyl-λ3-iodane in a flask at room temperature or below, providing experimental evidence to support theoretical predictions that C2 has a singlet biradical character with a quadruple bond, thus settling a long-standing controversy between experimental and theoretical chemists, and that C2 serves as a molecular element in the bottom-up chemical synthesis of nanocarbons such as graphite, carbon nanotubes, and C60.
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Affiliation(s)
- Kazunori Miyamoto
- Graduate School of Pharmaceutical Sciences, The University of Tokyo, 7-3-1 Hongo, Bunkyo-ku, Tokyo, 113-0033, Japan.
| | - Shodai Narita
- Graduate School of Pharmaceutical Sciences, The University of Tokyo, 7-3-1 Hongo, Bunkyo-ku, Tokyo, 113-0033, Japan
| | - Yui Masumoto
- Graduate School of Pharmaceutical Sciences, The University of Tokyo, 7-3-1 Hongo, Bunkyo-ku, Tokyo, 113-0033, Japan
| | - Takahiro Hashishin
- Graduate School of Pharmaceutical Sciences, The University of Tokyo, 7-3-1 Hongo, Bunkyo-ku, Tokyo, 113-0033, Japan
| | - Taisei Osawa
- Graduate School of Pharmaceutical Sciences, The University of Tokyo, 7-3-1 Hongo, Bunkyo-ku, Tokyo, 113-0033, Japan
| | - Mutsumi Kimura
- Division of Chemistry and Materials, Faculty of Textile Science and Technology, Shinshu University, Ueda, 386-8567, Japan
- Research Initiative for Supra-Materials (RISM), Shinshu University, Ueda, 386-8567, Japan
| | - Masahito Ochiai
- Graduate School of Pharmaceutical Sciences, University of Tokushima, 1-78 Shomachi, Tokushima, 770-8505, Japan
| | - Masanobu Uchiyama
- Graduate School of Pharmaceutical Sciences, The University of Tokyo, 7-3-1 Hongo, Bunkyo-ku, Tokyo, 113-0033, Japan.
- Research Initiative for Supra-Materials (RISM), Shinshu University, Ueda, 386-8567, Japan.
- Cluster of Pioneering Research (CPR), Advanced Elements Chemistry Laboratory, RIKEN, 2-1 Hirosawa, Wako-shi, Saitama, 351-0198, Japan.
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20
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Wu B, Jiang L, Luo Y, Wang C. The Effect of the Polyaromatic Hydrocarbon in the Formation of Fullerenes. Angew Chem Int Ed Engl 2020. [DOI: 10.1002/ange.201915228] [Citation(s) in RCA: 1] [Impact Index Per Article: 0.3] [Reference Citation Analysis] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Indexed: 11/07/2022]
Affiliation(s)
- Bo Wu
- Beijing National Laboratory for Molecular Sciences Key Laboratory of Molecular Nanostructure and Nanotecnology Institute of Chemistry Chinese Academy of Sciences Zhongguancun North First Street No. 2 Beijing 100190 China
| | - Li Jiang
- Beijing National Laboratory for Molecular Sciences Key Laboratory of Molecular Nanostructure and Nanotecnology Institute of Chemistry Chinese Academy of Sciences Zhongguancun North First Street No. 2 Beijing 100190 China
| | - Yi Luo
- Hefei National Laboratory for Physical Sciences at the Microscale Department of Chemical Physics Synergetic Innovation Center of Quantum Information and Quantum Physics University of Science and Technology of China Hefei Anhui 230026 China
- Department of Theoretical Chemistry School of Biotechnology Royal Institute of Technology AlbaNova 10691 Stockholm Sweden
| | - Chunru Wang
- Beijing National Laboratory for Molecular Sciences Key Laboratory of Molecular Nanostructure and Nanotecnology Institute of Chemistry Chinese Academy of Sciences Zhongguancun North First Street No. 2 Beijing 100190 China
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21
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Wu B, Jiang L, Luo Y, Wang C. The Effect of the Polyaromatic Hydrocarbon in the Formation of Fullerenes. Angew Chem Int Ed Engl 2020; 59:3942-3947. [PMID: 31883185 DOI: 10.1002/anie.201915228] [Citation(s) in RCA: 2] [Impact Index Per Article: 0.5] [Reference Citation Analysis] [Abstract] [Key Words] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Received: 11/28/2019] [Revised: 12/23/2019] [Indexed: 11/11/2022]
Abstract
Tremendous advances in nanoscience have been made since the discovery of fullerenes. However, the short timescale of the growth process and high-energy conditions of synthesis result in severe constraints to investigation of the mechanism of fullerene formation. In this work, we attempted to reveal the formation process by analyzing the variation in the yield of fullerenes under different conditions. Experiments and theoretical analysis show that the formation of fullerenes could be affected by the addition of polycyclic aromatic compounds. It is proposed that the formation of C60 during arc-discharge synthesis is fragment assembling, while the yield of C2m (m=35, 38, 39) is strongly enhanced by building-block splicing. In addition, several features of the building blocks are put forward to predict the extent of their influence to the formation of larger fullerenes C2n (n≥42). This work not only provides essential insight into the formation process of fullerenes, but more importantly also paves the way to improving the yield of larger fullerenes selectively.
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Affiliation(s)
- Bo Wu
- Beijing National Laboratory for Molecular Sciences, Key Laboratory of Molecular Nanostructure and Nanotecnology, Institute of Chemistry, Chinese Academy of Sciences, Zhongguancun North First Street No. 2, Beijing, 100190, China
| | - Li Jiang
- Beijing National Laboratory for Molecular Sciences, Key Laboratory of Molecular Nanostructure and Nanotecnology, Institute of Chemistry, Chinese Academy of Sciences, Zhongguancun North First Street No. 2, Beijing, 100190, China
| | - Yi Luo
- Hefei National Laboratory for Physical Sciences at the Microscale, Department of Chemical Physics, Synergetic Innovation Center of Quantum Information and Quantum Physics, University of Science and Technology of China, Hefei, Anhui, 230026, China.,Department of Theoretical Chemistry, School of Biotechnology, Royal Institute of Technology, AlbaNova, 10691, Stockholm, Sweden
| | - Chunru Wang
- Beijing National Laboratory for Molecular Sciences, Key Laboratory of Molecular Nanostructure and Nanotecnology, Institute of Chemistry, Chinese Academy of Sciences, Zhongguancun North First Street No. 2, Beijing, 100190, China
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22
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Lu SI. Discrete Solvent Reaction Field Calculations for One- and Two-Photon Absorptions of Solution-Phase Dimethylaminonitrostilbene Molecule. J Phys Chem A 2019; 123:5334-5340. [PMID: 31242735 DOI: 10.1021/acs.jpca.9b04041] [Citation(s) in RCA: 2] [Impact Index Per Article: 0.4] [Reference Citation Analysis] [Abstract] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Indexed: 11/30/2022]
Abstract
Based on the configurations generated by molecular dynamics (MD) simulations using the on-the-fly density-functional tight-bonding (DFTB) force field, we investigated performance of the discrete solvent reaction field (DRF) model coupled to time-dependent density functional theory (TD-DFT) for solvatochromic effect of one- and two-photon absorption phenomena. Dimethylaminonitrostilbene (DANS) molecule solvated in chloroform, dichloromethane, and dimethyl sulfoxide solvents was selected as a model system for our research purpose. For every selected MD/DFTB configuration, within the context of the DRF, solute molecule is represented by TD-DFT and solvent molecules are described by atomic charges and polarizabilities. The calculated one-photon absorption energies reproduce well the positive solvatochromic behavior of solvated DANS and are in good agreement with available experimental data. For the two-photon absorption cross section, even though our approach overshot the experimental data by about 20% in absolute magnitude, experimentally observed solvatochromic change was captured qualitatively in this work. At last, we examined the contributions of atomic charges and polarizabilities of solvent molecules to the solvatochromic shifts of properties of interest.
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Affiliation(s)
- Shih-I Lu
- Department of Chemistry Soochow University No. 70 Lin-Shih Road , Taipei City , 111 , Taiwan
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23
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Matera S, Schneider WF, Heyden A, Savara A. Progress in Accurate Chemical Kinetic Modeling, Simulations, and Parameter Estimation for Heterogeneous Catalysis. ACS Catal 2019. [DOI: 10.1021/acscatal.9b01234] [Citation(s) in RCA: 94] [Impact Index Per Article: 18.8] [Reference Citation Analysis] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Indexed: 11/30/2022]
Affiliation(s)
- Sebastian Matera
- Fachbereich Mathematik and Informatik, Freie Universität, 14195 Berlin, Germany
| | - William F. Schneider
- Department of Chemical and Biomolecular Engineering, University of Notre Dame, Notre Dame, Indiana 46556, United States
| | - Andreas Heyden
- Department of Chemical Engineering, University of South Carolina, Columbia, South Carolina 29208, United States
| | - Aditya Savara
- Chemical Sciences Division, Oak Ridge National Laboratory, Oak Ridge, Tennessee 37830, United States
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24
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Martin JW, Nyadong L, Ducati C, Manley-Harris M, Marshall AG, Kraft M. Nanostructure of Gasification Charcoal (Biochar). ENVIRONMENTAL SCIENCE & TECHNOLOGY 2019; 53:3538-3546. [PMID: 30865828 DOI: 10.1021/acs.est.8b06861] [Citation(s) in RCA: 1] [Impact Index Per Article: 0.2] [Reference Citation Analysis] [Abstract] [MESH Headings] [Track Full Text] [Subscribe] [Scholar Register] [Indexed: 06/09/2023]
Abstract
In this work, we investigate the molecular composition and nanostructure of gasification charcoal (biochar) by comparing it with heat-treated fullerene arc-soot. Using ultrahigh resolution Fourier transform ion-cyclotron resonance and laser desorption ionization time-of-flight mass spectrometry, Raman spectroscopy, and high resolution transmission electron microscopy we analyzed charcoal of low tar content obtained from gasification. Mass spectrometry revealed no magic number fullerenes such as C60 or C70 in the charcoal. The positive molecular ion m/ z 701, previously considered a graphitic part of the nanostructure, was found to be a breakdown product of pyrolysis and not part of the nanostructure. A higher mass distribution of ions similar to that found in thermally treated fullerene soot indicates that they share a nanostructure. Recent insights into the formation of all carbon fullerenes reveal that conditions in charcoal formation are not optimal for the formation of fullerenes, but instead, curved carbon structures coalesce into fulleroid-like structures. Microscopy and spectroscopy support such a stacked, fulleroid-like nanostructure, which was explored using reactive molecular dynamics simulations.
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Affiliation(s)
- Jacob W Martin
- Department of Chemical Engineering and Biotechnology , University of Cambridge , Philippa Fawcett Drive, West Site , CB3 0AS Cambridge , U.K
| | - Leonard Nyadong
- Phillips 66 Research Center , Highway 60 & 123, Bartlesville , Oklahoma 74003-6607 , United States
| | - Caterina Ducati
- Department of Materials Science and Metallurgy , University of Cambridge , Philippa Fawcett Drive, West Site , CB3 0FS Cambridge , U.K
| | | | - Alan G Marshall
- National High Magnetic Field Laboratory , Florida State University , 1800 E. Paul Dirac Drive , Tallahassee , Florida 32310-4005 , United States
| | - Markus Kraft
- Department of Chemical Engineering and Biotechnology , University of Cambridge , Philippa Fawcett Drive, West Site , CB3 0AS Cambridge , U.K
- Cambridge Centre for Advanced Research and Education in Singapore (CARES) , CREATE Tower, 1 Create Way, Singapore 138602
- School of Chemical and Biomedical Engineering , Nanyang Technological University , 62 Nanyang Drive , Singapore 637459
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25
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Chan B, Kawashima Y, Dawson W, Katouda M, Nakajima T, Hirao K. A Simple Model for Relative Energies of All Fullerenes Reveals the Interplay between Intrinsic Resonance and Structural Deformation Effects in Medium-Sized Fullerenes. J Chem Theory Comput 2019; 15:1255-1264. [PMID: 30701966 DOI: 10.1021/acs.jctc.8b00981] [Citation(s) in RCA: 14] [Impact Index Per Article: 2.8] [Reference Citation Analysis] [Abstract] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Indexed: 11/29/2022]
Abstract
Fullerenes are sheets of sp2 carbon atoms wrapped around to form spheres. With this simple consideration, we have in the present study devised and (with over 3600 DFT data points) successfully validated a simple model, termed R+D, for estimating the relative energies of fullerenes. This model contains a resonance component to account for the intrinsic differences between the π-energies of different fullerenes, and a deformation component for treating the distortions from planarity. Notably, we find that both terms (and they alone) are required to obtain good relative energies, which lends support to the formulation of the R+D model. An interesting finding is that for some medium-sized IPR fullerenes, their isomers show similar variations in the two components. We deduce that these fullerenes may represent a good opportunity for tuning molecular properties for practical applications. We hope that the promising results of the present study will encourage further investigations into fullerenes from a fundamental perspective.
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Affiliation(s)
- Bun Chan
- Graduate School of Engineering , Nagasaki University , Bunkyo 1-14 , Nagasaki-shi , Nagasaki 852-8521 , Japan
| | - Yukio Kawashima
- RIKEN Center for Computational Science , 7-1-26 Minatojima-minami-machi , Chuo-ku, Kobe , Hyogo 650-0047 , Japan
| | - William Dawson
- RIKEN Center for Computational Science , 7-1-26 Minatojima-minami-machi , Chuo-ku, Kobe , Hyogo 650-0047 , Japan
| | - Michio Katouda
- RIKEN Center for Computational Science , 7-1-26 Minatojima-minami-machi , Chuo-ku, Kobe , Hyogo 650-0047 , Japan
| | - Takahito Nakajima
- RIKEN Center for Computational Science , 7-1-26 Minatojima-minami-machi , Chuo-ku, Kobe , Hyogo 650-0047 , Japan
| | - Kimihiko Hirao
- RIKEN Center for Computational Science , 7-1-26 Minatojima-minami-machi , Chuo-ku, Kobe , Hyogo 650-0047 , Japan
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26
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Examining the Class B to A Shift of the 7.7 μm PAH Band with the NASA Ames PAH IR Spectroscopic Database. ACTA ACUST UNITED AC 2019. [DOI: 10.3847/1538-4357/aaf562] [Citation(s) in RCA: 14] [Impact Index Per Article: 2.8] [Reference Citation Analysis] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Indexed: 11/18/2022]
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27
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Wang Y, Díaz-Tendero S, Alcamí M, Martín F. Aromaticity, Coulomb repulsion, π delocalization or strain: who is who in endohedral metallofullerene stability? Phys Chem Chem Phys 2019; 21:124-131. [DOI: 10.1039/c8cp06707d] [Citation(s) in RCA: 7] [Impact Index Per Article: 1.4] [Reference Citation Analysis] [Abstract] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Indexed: 01/12/2023]
Abstract
Three different models for endohedral metallofullerene structure prediction are compared, revealing the physical origin of the stability of these compounds.
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Affiliation(s)
- Yang Wang
- School of Chemistry and Chemical Engineering
- Yangzhou University
- Yangzhou
- China
- Departamento de Química
| | - Sergio Díaz-Tendero
- Departamento de Química
- Módulo 13
- Universidad Autónoma de Madrid
- 28049 Madrid
- Spain
| | - Manuel Alcamí
- Departamento de Química
- Módulo 13
- Universidad Autónoma de Madrid
- 28049 Madrid
- Spain
| | - Fernando Martín
- Departamento de Química
- Módulo 13
- Universidad Autónoma de Madrid
- 28049 Madrid
- Spain
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28
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Lee KH, Schnupf U, Sumpter BG, Irle S. Performance of Density-Functional Tight-Binding in Comparison to Ab Initio and First-Principles Methods for Isomer Geometries and Energies of Glucose Epimers in Vacuo and Solution. ACS OMEGA 2018; 3:16899-16915. [PMID: 31458314 PMCID: PMC6643604 DOI: 10.1021/acsomega.8b02213] [Citation(s) in RCA: 2] [Impact Index Per Article: 0.3] [Reference Citation Analysis] [Abstract] [Track Full Text] [Subscribe] [Scholar Register] [Received: 08/29/2018] [Accepted: 11/07/2018] [Indexed: 05/12/2023]
Abstract
Density functional theory (DFT) is a widely used methodology for the computation of molecular and electronic structure, and we confirm that B3LYP and the high-level ab initio G3B3 method are in excellent agreement for the lowest-energy isomers of the 16 glucose epimers. Density-functional tight-binding (DFTB) is an approximate version of DFT with typically comparable accuracy that is 2 to 3 orders of magnitude faster, therefore generally very suitable for processing large numbers of complex structures. Conformational isomerism in sugars is well known to give rise to a large number of isomer structures. On the basis of a comprehensive study of glucose epimers in vacuo and aqueous solution, we found that the performance of DFTB is on par to B3LYP in terms of geometrical parameters excluding hydrogen bonds and isomer energies. However, DFTB underestimates both hydrogen bonding interactions as well as torsional barriers associated with rotations of the hydroxy groups, resulting in a counterintuitive overemphasis of hydrogen bonding in both gas phase as well as in water. Although the associated root mean squared deviation from B3LYP within epimer isomer groups is only on the order of 1 kcal/mol, this deviation affects the correct assignment of major isomer ordering, which span less than 10 kcal/mol. Both second- as well as third-order DFTB methods are exhibiting similar deviations from B3LYP. Even after the inclusion of empirical dispersion corrections in vacuum, these deviations remain for a large majority of isomer energies and geometries when compared to dispersion-corrected B3LYP.
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Affiliation(s)
- Ka Hung Lee
- Department
of Chemistry, Graduate School of Science, Nagoya University, Nagoya 464-8602, Japan
- Bredesen
Center for Interdisciplinary Research and Graduate Education, University of Tennessee, Knoxville, Tennessee 37996, United States
| | - Udo Schnupf
- Department
of Chemistry and Biochemistry, Bradley University, Peoria, Illinois 61625, United States
- E-mail: (U.S.)
| | - Bobby G. Sumpter
- Computational Sciences and Engineering Division &
Chemical Sciences
Division and Center for Nanophase Materials Sciences, Oak Ridge National Laboratory, Oak Ridge, Tennessee 37831, United States
| | - Stephan Irle
- Department
of Chemistry, Graduate School of Science, Nagoya University, Nagoya 464-8602, Japan
- Computational Sciences and Engineering Division &
Chemical Sciences
Division and Center for Nanophase Materials Sciences, Oak Ridge National Laboratory, Oak Ridge, Tennessee 37831, United States
- E-mail: (S.I.)
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29
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Ahmad S. Information-theoretic model of self-organizing fullerenes and the emergence of C60. Chem Phys Lett 2018. [DOI: 10.1016/j.cplett.2018.10.024] [Citation(s) in RCA: 4] [Impact Index Per Article: 0.7] [Reference Citation Analysis] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Indexed: 11/30/2022]
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30
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Patel LA, Kindt JT. Simulations of NaCl Aggregation from Solution: Solvent Determines Topography of Free Energy Landscape. J Comput Chem 2018; 40:135-147. [DOI: 10.1002/jcc.25554] [Citation(s) in RCA: 9] [Impact Index Per Article: 1.5] [Reference Citation Analysis] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Received: 04/27/2018] [Revised: 07/10/2018] [Accepted: 07/11/2018] [Indexed: 11/10/2022]
Affiliation(s)
- Lara A. Patel
- Department of Chemistry; Emory University; 1515 Dickey Drive, Atlanta Georgia 30322
| | - James T. Kindt
- Department of Chemistry; Emory University; 1515 Dickey Drive, Atlanta Georgia 30322
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31
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Krstic PS, Han L, Irle S, Nakai H. Simulations of the synthesis of boron-nitride nanostructures in a hot, high pressure gas volume. Chem Sci 2018; 9:3803-3819. [PMID: 29780513 PMCID: PMC5939839 DOI: 10.1039/c8sc00667a] [Citation(s) in RCA: 24] [Impact Index Per Article: 4.0] [Reference Citation Analysis] [Abstract] [Track Full Text] [Download PDF] [Figures] [Journal Information] [Subscribe] [Scholar Register] [Received: 02/08/2018] [Accepted: 03/16/2018] [Indexed: 11/21/2022] Open
Abstract
We performed nanosecond timescale computer simulations of clusterization and agglomeration processes of boron nitride (BN) nanostructures in hot, high pressure gas, starting from eleven different atomic and molecular precursor systems containing boron, nitrogen and hydrogen at various temperatures from 1500 to 6000 K. The synthesized BN nanostructures self-assemble in the form of cages, flakes, and tubes as well as amorphous structures. The simulations facilitate the analysis of chemical dynamics and we are able to predict the optimal conditions concerning temperature and chemical precursor composition for controlling the synthesis process in a high temperature gas volume, at high pressure. We identify the optimal precursor/temperature choices that lead to the nanostructures of highest quality with the highest rate of synthesis, using a novel parameter of the quality of the synthesis (PQS). Two distinct mechanisms of BN nanotube growth were found, neither of them based on the root-growth process. The simulations were performed using quantum-classical molecular dynamics (QCMD) based on the density-functional tight-binding (DFTB) quantum mechanics in conjunction with a divide-and-conquer (DC) linear scaling algorithm, as implemented in the DC-DFTB-K code, enabling the study of systems as large as 1300 atoms in canonical NVT ensembles for 1 ns time.
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Affiliation(s)
- Predrag S Krstic
- Institute for Advanced Computational Science , Stony Brook University , Stony Brook , NY 11794-5250 , USA . .,Department of Materials Science and Chemical Engineering , Stony Brook University , Stony Brook , NY 11794-2275 , USA
| | - Longtao Han
- Institute for Advanced Computational Science , Stony Brook University , Stony Brook , NY 11794-5250 , USA . .,Department of Materials Science and Chemical Engineering , Stony Brook University , Stony Brook , NY 11794-2275 , USA
| | - Stephan Irle
- Computational Sciences & Engineering Division , Oak Ridge National Laboratory , Oak Ridge TN , 37831-6493 , USA
| | - Hiromi Nakai
- Department of Chemistry and Biochemistry , School of Advanced Science and Engineering , Waseda University , Tokyo 169-8555 , Japan.,Waseda Research Institute for Science and Engineering , Waseda University , Tokyo 169-8555 , Japan
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32
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Habib MR, Liang T, Yu X, Pi X, Liu Y, Xu M. A review of theoretical study of graphene chemical vapor deposition synthesis on metals: nucleation, growth, and the role of hydrogen and oxygen. REPORTS ON PROGRESS IN PHYSICS. PHYSICAL SOCIETY (GREAT BRITAIN) 2018; 81:036501. [PMID: 29355108 DOI: 10.1088/1361-6633/aa9bbf] [Citation(s) in RCA: 6] [Impact Index Per Article: 1.0] [Reference Citation Analysis] [Abstract] [Track Full Text] [Subscribe] [Scholar Register] [Indexed: 06/07/2023]
Abstract
Graphene has attracted intense research interest due to its extraordinary properties and great application potential. Various methods have been proposed for the synthesis of graphene, among which chemical vapor deposition has drawn a great deal of attention for synthesizing large-area and high-quality graphene. Theoretical understanding of the synthesis mechanism is crucial for optimizing the experimental design for desired graphene production. In this review, we discuss the three fundamental steps of graphene synthesis in details, i.e. (1) decomposition of carbon feedstocks and formation of various active carbon species, (2) nucleation, and (3) attachment and extension. We provide a complete scenario of graphene synthesis on metal surfaces at atomistic level by means of density functional theory, molecular dynamics (MD), Monte Carlo (MC) and their combination and interface with other simulation methods such as quantum mechanical molecular dynamics, density functional tight binding molecular dynamics, and combination of MD and MC. We also address the latest investigation of the influences of the hydrogen and oxygen on the synthesis and the quality of the synthesized graphene.
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Affiliation(s)
- Mohammad Rezwan Habib
- State Key Laboratory of Silicon Materials, College of Information Science and Electronic Engineering, Zhejiang University, Hangzhou 310027, People's Republic of China
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33
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Wang Y, Díaz-Tendero S, Alcamí M, Martín F. Topology-Based Approach to Predict Relative Stabilities of Charged and Functionalized Fullerenes. J Chem Theory Comput 2018; 14:1791-1810. [DOI: 10.1021/acs.jctc.7b01048] [Citation(s) in RCA: 19] [Impact Index Per Article: 3.2] [Reference Citation Analysis] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Indexed: 11/29/2022]
Affiliation(s)
- Yang Wang
- Departamento de Química, Módulo 13, Universidad Autónoma de Madrid, 28049 Madrid, Spain
- Institute for Advanced Research in Chemical Sciences (IAdChem), Universidad Autónoma de Madrid, 28049 Madrid, Spain
| | - Sergio Díaz-Tendero
- Departamento de Química, Módulo 13, Universidad Autónoma de Madrid, 28049 Madrid, Spain
- Institute for Advanced Research in Chemical Sciences (IAdChem), Universidad Autónoma de Madrid, 28049 Madrid, Spain
- Condensed Matter Physics Center (IFIMAC), Universidad Autónoma de Madrid, 28049 Madrid, Spain
| | - Manuel Alcamí
- Departamento de Química, Módulo 13, Universidad Autónoma de Madrid, 28049 Madrid, Spain
- Institute for Advanced Research in Chemical Sciences (IAdChem), Universidad Autónoma de Madrid, 28049 Madrid, Spain
- Instituto Madrileño de Estudios Avanzados en Nanociencia (IMDEA-Nanociencia), 28049 Madrid, Spain
| | - Fernando Martín
- Departamento de Química, Módulo 13, Universidad Autónoma de Madrid, 28049 Madrid, Spain
- Condensed Matter Physics Center (IFIMAC), Universidad Autónoma de Madrid, 28049 Madrid, Spain
- Instituto Madrileño de Estudios Avanzados en Nanociencia (IMDEA-Nanociencia), 28049 Madrid, Spain
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34
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Wang WW, Dang JS, Zhao X, Nagase S. Revisit of the Saito-Dresselhaus-Dresselhaus C 2 ingestion model: on the mechanism of atomic-carbon-participated fullerene growth. NANOSCALE 2017; 9:16742-16748. [PMID: 29068022 DOI: 10.1039/c7nr04966h] [Citation(s) in RCA: 1] [Impact Index Per Article: 0.1] [Reference Citation Analysis] [Abstract] [Track Full Text] [Subscribe] [Scholar Register] [Indexed: 06/07/2023]
Abstract
We introduce a mechanistic study based on a controversial fullerene bottom-up growth model proposed by R. Saito, G. Dresselhaus, and M. S. Dresselhaus. The so-called SDD C2 addition model has been dismissed as chemically inadmissible but here we prove that it is feasible via successive atomic-carbon-participated addition and migration reactions. Kinetic calculations on the formation of isolated pentagon rule (IPR)-obeying C70 and Y3N@C80 are carried out by employing the SDD model for the first time. A stepwise mechanism is proposed with a considerably low barrier of ca. 2 eV which is about 3 eV lower than a conventional isomerization-containing fullerene growth pathway.
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Affiliation(s)
- Wei-Wei Wang
- Institute for Chemical Physics & Department of Chemistry, School of Science, Xi'an Jiaotong University, Xi'an 710049, China.
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35
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Abella L, Wang Y, Rodríguez-Fortea A, Chen N, Poblet JM. Current status of oxide clusterfullerenes. Inorganica Chim Acta 2017. [DOI: 10.1016/j.ica.2017.05.040] [Citation(s) in RCA: 14] [Impact Index Per Article: 2.0] [Reference Citation Analysis] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Indexed: 11/25/2022]
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36
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Transformation of doped graphite into cluster-encapsulated fullerene cages. Nat Commun 2017; 8:1222. [PMID: 29089497 PMCID: PMC5663703 DOI: 10.1038/s41467-017-01295-9] [Citation(s) in RCA: 15] [Impact Index Per Article: 2.1] [Reference Citation Analysis] [Abstract] [Track Full Text] [Download PDF] [Figures] [Journal Information] [Subscribe] [Scholar Register] [Received: 05/22/2017] [Accepted: 09/07/2017] [Indexed: 11/09/2022] Open
Abstract
An ultimate goal in carbon nanoscience is to decipher formation mechanisms of highly ordered systems. Here, we disclose chemical processes that result in formation of high-symmetry clusterfullerenes, which attract interest for use in applications that span biomedicine to molecular electronics. The conversion of doped graphite into a C80 cage is shown to occur through bottom-up self-assembly reactions. Unlike conventional forms of fullerene, the iconic Buckminsterfullerene cage, Ih-C60, is entirely avoided in the bottom-up formation mechanism to afford synthesis of group 3-based metallic nitride clusterfullerenes. The effects of structural motifs and cluster–cage interactions on formation of compounds in the solvent-extractable C70–C100 region are determined by in situ studies of defined clusterfullerenes under typical synthetic conditions. This work establishes the molecular origin and mechanism that underlie formation of unique carbon cage materials, which may be used as a benchmark to guide future nanocarbon explorations. An understanding of how caged carbon materials self-assemble from doped graphite is a long-standing challenge. Here, the authors show that distinct bottom-up processes lead to the synthesis of high-symmetry clusterfullerenes.
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37
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Gatchell M, Delaunay R, D'Angelo G, Mika A, Kulyk K, Domaracka A, Rousseau P, Zettergren H, Huber BA, Cederquist H. Ion-induced molecular growth in clusters of small hydrocarbon chains. Phys Chem Chem Phys 2017; 19:19665-19672. [PMID: 28503696 DOI: 10.1039/c7cp02090b] [Citation(s) in RCA: 7] [Impact Index Per Article: 1.0] [Reference Citation Analysis] [Abstract] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Indexed: 11/21/2022]
Abstract
We report on studies of collisions between 3 keV Ar+ projectile ions and neutral targets of isolated 1,3-butadiene (C4H6) molecules and cold, loosely bound clusters of these molecules. We identify molecular growth processes within the molecular clusters that appears to be driven by knockout processes and that could result in the formation of (aromatic) ring structures. These types of reactions are not unique to specific projectile ions and target molecules, but will occur whenever atoms or ions with suitable masses and kinetic energies collide with aggregates of matter, such as carbonaceous grains in the interstellar medium or aerosol nanoparticles in the atmosphere.
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Affiliation(s)
- Michael Gatchell
- Department of Physics, Stockholm University, SE-106 91 Stockholm, Sweden.
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38
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Kong X, Bao X. Formation of endohedral metallofullerene (EMF) ions of MnC2m+ (M = La, Y, n ≤ 6, 50 ≤ 2m ≤ 194) in the laser ablation process with graphene as precursor. RAPID COMMUNICATIONS IN MASS SPECTROMETRY : RCM 2017; 31:865-872. [PMID: 28339132 DOI: 10.1002/rcm.7856] [Citation(s) in RCA: 6] [Impact Index Per Article: 0.9] [Reference Citation Analysis] [Abstract] [Track Full Text] [Subscribe] [Scholar Register] [Received: 01/13/2017] [Revised: 03/13/2017] [Accepted: 03/17/2017] [Indexed: 06/06/2023]
Abstract
RATIONALE Graphene has proved to be a versatile precursor for the generation of mono-endohedral metallofullerenes (EMFs) of alkali and alkali earth metal atoms. Thus, it is important to investigate whether graphene is also a good precursor for the generation of EMFs including multi-metal atoms or some transition metal atoms. METHODS Experiments were performed on a 7.0 T Fourier transform ion cyclotron resonance (FT-ICR) mass spectrometer. Laser ablation mass spectra were obtained by laser irradiation on mixtures of graphene and LaCl3 , YCl3 or HAuCl4 on a stainless steel plate. A 355 nm Nd:YAG laser with a typical energy of 2.5 mJ/pulse was employed in these experiments. Tandem mass spectrometry was performed by on-resonance excitation collision-induced dissociation (CID) for selected single isotopic peaks. RESULTS Metallofullerene La1-6C2m+/ Y1-6C2m+ ions were observed in the laser ablation mass spectra of mixtures of graphene and LaCl3 /YCl3 . CID and reactant gas experiments on selected ions showed that these ions had endohedral structures. Considering the experimental condition applied here, a mechanism based on a top-down process for the generation of the EMF ions is suggested. Further experiments on HAuCl4 showed some weak signals of AuC2m+ for the first time. CONCLUSIONS Mono- and multi-EMF ions of MnC2m+ (M = La, Y, n = 1-6, 50 ≤ 2 m ≤ 194) were generated by laser ablation of graphene and the corresponding metal salts and detected by FT-ICR mass spectrometry. The results have shed light on the formation and generation of some new EMF species. Copyright © 2017 John Wiley & Sons, Ltd.
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Affiliation(s)
- Xianglei Kong
- State Key Laboratory and Institute of Elemento-Organic Chemistry, College of Chemistry, Nankai University, 300071, Tianjin, China
- Collaborative Innovation Center of Chemical Science and Engineering, Nankai University, 300071, Tianjin, China
| | - Xiaodi Bao
- State Key Laboratory and Institute of Elemento-Organic Chemistry, College of Chemistry, Nankai University, 300071, Tianjin, China
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39
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Sinitsa AS, Chamberlain TW, Zoberbier T, Lebedeva IV, Popov AM, Knizhnik AA, McSweeney RL, Biskupek J, Kaiser U, Khlobystov AN. Formation of Nickel Clusters Wrapped in Carbon Cages: Toward New Endohedral Metallofullerene Synthesis. NANO LETTERS 2017; 17:1082-1089. [PMID: 28075593 DOI: 10.1021/acs.nanolett.6b04607] [Citation(s) in RCA: 7] [Impact Index Per Article: 1.0] [Reference Citation Analysis] [Abstract] [Key Words] [MESH Headings] [Track Full Text] [Subscribe] [Scholar Register] [Indexed: 06/06/2023]
Abstract
Despite the high potential of endohedral metallofullerenes (EMFs) for application in biology, medicine and molecular electronics, and recent efforts in EMF synthesis, the variety of EMFs accessible by conventional synthetic methods remains limited and does not include, for example, EMFs of late transition metals. We propose a method in which EMF formation is initiated by electron irradiation in aberration-corrected high-resolution transmission electron spectroscopy (AC-HRTEM) of a metal cluster surrounded by amorphous carbon inside a carbon nanotube serving as a nanoreactor and apply this method for synthesis of nickel EMFs. The use of AC-HRTEM makes it possible not only to synthesize new, previously unattainable nanoobjects but also to study in situ the mechanism of structural transformations. Molecular dynamics simulations using the state-of-the-art approach for modeling the effect of electron irradiation are performed to rationalize the experimental observations and to link the observed processes with conditions of bulk EMF synthesis.
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Affiliation(s)
- Alexander S Sinitsa
- National Research Centre "Kurchatov Institute" , Kurchatov Square 1, Moscow 123182, Russia
| | - Thomas W Chamberlain
- Institute of Process Research and Development, School of Chemistry, University of Leeds , Leeds LS2 9JT, United Kingdom
| | - Thilo Zoberbier
- Group of Electron Microscopy of Materials Science, Central Facility for Electron Microscopy, Ulm University , Albert Einstein Allee 11, Ulm 89081, Germany
| | - Irina V Lebedeva
- Nano-Bio Spectroscopy Group and ETSF, Universidad del País Vasco, CFM CSIC-UPV/EHU , San Sebastian 20018, Spain
| | - Andrey M Popov
- Institute for Spectroscopy of Russian Academy of Sciences , Fizicheskaya Street 5, Troitsk, Moscow 108840, Russia
| | - Andrey A Knizhnik
- National Research Centre "Kurchatov Institute" , Kurchatov Square 1, Moscow 123182, Russia
- Kintech Lab Ltd. , 3rd Khoroshevskaya Street 12, Moscow 123298, Russia
| | - Robert L McSweeney
- School of Chemistry, University of Nottingham , University Park, Nottingham NG7 2RD, United Kingdom
| | - Johannes Biskupek
- Group of Electron Microscopy of Materials Science, Central Facility for Electron Microscopy, Ulm University , Albert Einstein Allee 11, Ulm 89081, Germany
| | - Ute Kaiser
- Group of Electron Microscopy of Materials Science, Central Facility for Electron Microscopy, Ulm University , Albert Einstein Allee 11, Ulm 89081, Germany
| | - Andrei N Khlobystov
- School of Chemistry, University of Nottingham , University Park, Nottingham NG7 2RD, United Kingdom
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40
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Sure R, Hansen A, Schwerdtfeger P, Grimme S. Comprehensive theoretical study of all 1812 C60 isomers. Phys Chem Chem Phys 2017; 19:14296-14305. [DOI: 10.1039/c7cp00735c] [Citation(s) in RCA: 53] [Impact Index Per Article: 7.6] [Reference Citation Analysis] [Abstract] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Indexed: 12/21/2022]
Abstract
All 1812 C60 isomers are investigated with high-level quantum chemical methods to benchmark semiempirical approaches and find appropriate stability criteria.
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Affiliation(s)
- Rebecca Sure
- Mulliken Center for Theoretical Chemistry
- Institut für Physikalische und Theoretische Chemie
- Universität Bonn
- 53115 Bonn
- Germany
| | - Andreas Hansen
- Mulliken Center for Theoretical Chemistry
- Institut für Physikalische und Theoretische Chemie
- Universität Bonn
- 53115 Bonn
- Germany
| | - Peter Schwerdtfeger
- Centre of Theoretical Chemistry and Physics
- The New Zealand Institute for Advanced Study
- Massey University Auckland
- 0745 Auckland
- New Zealand
| | - Stefan Grimme
- Mulliken Center for Theoretical Chemistry
- Institut für Physikalische und Theoretische Chemie
- Universität Bonn
- 53115 Bonn
- Germany
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41
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Wang Y, Díaz-Tendero S, Alcamí M, Martín F. Generalized structural motif model for studying the thermodynamic stability of fullerenes: from C60to graphene passing through giant fullerenes. Phys Chem Chem Phys 2017; 19:19646-19655. [DOI: 10.1039/c7cp01598d] [Citation(s) in RCA: 8] [Impact Index Per Article: 1.1] [Reference Citation Analysis] [Abstract] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Indexed: 12/11/2022]
Abstract
A generalized motif model to describe the stability of neutral fullerenes, covering the full range of cage sizes, starting from C60, going through giant fullerenes, and ultimately leading to graphene.
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Affiliation(s)
- Yang Wang
- Departamento de Química
- Módulo 13
- Universidad Autónoma de Madrid
- 28049 Madrid
- Spain
| | - Sergio Díaz-Tendero
- Departamento de Química
- Módulo 13
- Universidad Autónoma de Madrid
- 28049 Madrid
- Spain
| | - Manuel Alcamí
- Departamento de Química
- Módulo 13
- Universidad Autónoma de Madrid
- 28049 Madrid
- Spain
| | - Fernando Martín
- Departamento de Química
- Módulo 13
- Universidad Autónoma de Madrid
- 28049 Madrid
- Spain
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42
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Cabaleiro-Lago EM, Rodríguez-Otero J, Carrazana-García JA. A theoretical study of complexes between fullerenes and concave receptors with interest in photovoltaics. Phys Chem Chem Phys 2017; 19:26787-26798. [DOI: 10.1039/c7cp03665e] [Citation(s) in RCA: 21] [Impact Index Per Article: 3.0] [Reference Citation Analysis] [Abstract] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Indexed: 11/21/2022]
Abstract
The proper combination of host and guest allows controlling the stability and charge transfer capability of fullerene–concave receptor complexes.
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Affiliation(s)
- E. M. Cabaleiro-Lago
- Facultade de Ciencias (Dpto. de Química Física)
- Universidade de Santiago de Compostela
- 27002 Lugo
- Spain
| | - J. Rodríguez-Otero
- CIQUS and Facultade de Química (Dpto. de Química Física)
- Universidade de Santiago de Compostela
- 15782 Santiago de Compostela
- Spain
| | - J. A. Carrazana-García
- Facultade de Ciencias (Dpto. de Química Física)
- Universidade de Santiago de Compostela
- 27002 Lugo
- Spain
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43
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Han JY, Choi TS, Kim S, Lee JW, Ha Y, Jeong KS, Kim H, Choi HC, Kim HI. Probing Distinct Fullerene Formation Processes from Carbon Precursors of Different Sizes and Structures. Anal Chem 2016; 88:8232-8. [PMID: 27434606 DOI: 10.1021/acs.analchem.6b02076] [Citation(s) in RCA: 6] [Impact Index Per Article: 0.8] [Reference Citation Analysis] [Abstract] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Indexed: 11/28/2022]
Abstract
Fullerenes, cage-structured carbon allotropes, have been the subject of extensive research as new materials for diverse purposes. Yet, their formation process is still not clearly understood at the molecular level. In this study, we performed laser desorption ionization-ion mobility-mass spectrometry (LDI-IM-MS) of carbon substrates possessing different molecular sizes and structures to understand the formation process of fullerene. Our observations show that the formation process is strongly dependent on the size of the precursor used, with small precursors yielding small fullerenes and large graphitic precursors generally yielding larger fullerenes. These results clearly demonstrate that fullerene formation can proceed via both bottom-up and top-down processes, with the latter being favored for large precursors and more efficient at forming fullerenes. Furthermore, we observed that specific structures of carbon precursors could additionally affect the relative abundance of C60 fullerene. Overall, this study provides an advanced understanding of the mechanistic details underlying the formation processes of fullerene.
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Affiliation(s)
- Jong Yoon Han
- Department of Chemistry, Research Institute for Natural Sciences, Korea University , Seoul, 02841, Republic of Korea
| | - Tae Su Choi
- Department of Chemistry, Research Institute for Natural Sciences, Korea University , Seoul, 02841, Republic of Korea.,Department of Chemistry, Pohang University of Science and Technology (POSTECH) , Pohang, 37673, Republic of Korea
| | - Soyoung Kim
- Department of Chemistry, Pohang University of Science and Technology (POSTECH) , Pohang, 37673, Republic of Korea.,Center for Artificial Low Dimensional Electronic Systems, Institute for Basic Science (IBS) , Pohang 37673, Republic of Korea
| | - Jong Wha Lee
- Department of Chemistry, Research Institute for Natural Sciences, Korea University , Seoul, 02841, Republic of Korea.,Department of Chemistry, Pohang University of Science and Technology (POSTECH) , Pohang, 37673, Republic of Korea
| | - Yoonhoo Ha
- Graduate School of Energy, Environment, Water, and Sustainability (EEWS), Korea Advanced Institute of Science and Technology , Daejeon, 34141, Republic of Korea
| | - Kwang Seob Jeong
- Department of Chemistry, Research Institute for Natural Sciences, Korea University , Seoul, 02841, Republic of Korea
| | - Hyungjun Kim
- Graduate School of Energy, Environment, Water, and Sustainability (EEWS), Korea Advanced Institute of Science and Technology , Daejeon, 34141, Republic of Korea
| | - Hee Cheul Choi
- Department of Chemistry, Pohang University of Science and Technology (POSTECH) , Pohang, 37673, Republic of Korea.,Center for Artificial Low Dimensional Electronic Systems, Institute for Basic Science (IBS) , Pohang 37673, Republic of Korea
| | - Hugh I Kim
- Department of Chemistry, Research Institute for Natural Sciences, Korea University , Seoul, 02841, Republic of Korea
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44
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Maeda S, Harabuchi Y, Takagi M, Taketsugu T, Morokuma K. Artificial Force Induced Reaction (AFIR) Method for Exploring Quantum Chemical Potential Energy Surfaces. CHEM REC 2016; 16:2232-2248. [DOI: 10.1002/tcr.201600043] [Citation(s) in RCA: 94] [Impact Index Per Article: 11.8] [Reference Citation Analysis] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Received: 03/08/2016] [Indexed: 12/25/2022]
Affiliation(s)
- Satoshi Maeda
- Department of Chemistry, Faculty of Science; Hokkaido University; Sapporo 060-0810 Japan
| | - Yu Harabuchi
- Department of Chemistry, Faculty of Science; Hokkaido University; Sapporo 060-0810 Japan
| | - Makito Takagi
- Graduate School of Chemical Sciences and Engineering; Hokkaido University; Sapporo 060-8628 Japan
| | - Tetsuya Taketsugu
- Department of Chemistry, Faculty of Science; Hokkaido University; Sapporo 060-0810 Japan
| | - Keiji Morokuma
- Fukui Institute for Fundamental Chemistry, Kyoto University; Kyoto 606-8103 Japan
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45
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Lee C, Lee KH. Decomposition Patterns of Three C 20Isomer Clusters: Tight-binding Molecular Dynamics Simulation. B KOREAN CHEM SOC 2016. [DOI: 10.1002/bkcs.10801] [Citation(s) in RCA: 4] [Impact Index Per Article: 0.5] [Reference Citation Analysis] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Indexed: 11/09/2022]
Affiliation(s)
- Changhoon Lee
- Department of Chemistry; Pohang University of Sciences and Technology; Pohang Gyeongbuk 790-784 Korea
| | - Kee Hag Lee
- Department of Chemistry; Nanoscale Sciences and Technology Institute, Wonkwang University; Iksan Jeonbuk 570-749 Korea
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46
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Deng Q, Heine T, Irle S, Popov AA. Self-assembly of endohedral metallofullerenes: a decisive role of cooling gas and metal-carbon bonding. NANOSCALE 2016; 8:3796-808. [PMID: 26815243 PMCID: PMC4847527 DOI: 10.1039/c5nr08645k] [Citation(s) in RCA: 16] [Impact Index Per Article: 2.0] [Reference Citation Analysis] [Abstract] [Grants] [Track Full Text] [Subscribe] [Scholar Register] [Received: 12/05/2015] [Accepted: 01/15/2016] [Indexed: 05/12/2023]
Abstract
The endohedral metallofullerene (EMF) self-assembly process in Sc/carbon vapor in the presence and absence of an inert cooling gas (helium) is systematically investigated using quantum chemical molecular dynamics simulations. It is revealed that the presence of He atoms accelerates the formation of pentagons and hexagons and reduces the size of the self-assembled carbon cages in comparison with analogous He-free simulations. As a result, the Sc/C/He system simulations produce a larger number of successful trajectories (i.e. leading to Sc-EMFs) with more realistic cage-size distribution than simulations of the Sc/C system. The main Sc encapsulation mechanism involves nucleation of several hexagons and pentagons with Sc atoms already at the early stages of carbon vapor condensation. In such proto-cages, both Sc-C σ-bonds and coordination bonds between Sc atoms and the π-system of the carbon network are present. Sc atoms are thus rather labile and can move along the carbon network, but the overall bonding is sufficiently strong to prevent dissociation even at temperatures around 2000 kelvin. Further growth of the fullerene cage results in the encapsulation of one or two Sc atoms within the fullerene. In agreement with experimental studies, an extension of the simulations to Fe and Ti as the metal component showed that Fe-EMFs are not formed at all, whereas Ti is prone to form Ti-EMFs with small cage sizes, including Ti@C28-Td and Ti@C30-C2v(3).
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Affiliation(s)
- Qingming Deng
- Leibniz-Institute for Solid State and Materials Research (IFW Dresden) , D-01171 Dresden , Germany .
- Department of Physics and Earth Science , Jacobs University Bremen , Campus Ring 1 , 28759 Bremen , Germany
- Institute of Transformative Bio-Molecules (WPI-ITbM) & Department of Chemistry , Nagoya University , 464-8602 Nagoya , Japan
| | - Thomas Heine
- Department of Physics and Earth Science , Jacobs University Bremen , Campus Ring 1 , 28759 Bremen , Germany
- Wilhelm-Ostwald-Institut für Physikalische und Theoretische Chemie , Universität Leipzig , Linnéstr. 2 , 04103 Leipzig , Germany
| | - Stephan Irle
- Institute of Transformative Bio-Molecules (WPI-ITbM) & Department of Chemistry , Nagoya University , 464-8602 Nagoya , Japan
| | - Alexey A. Popov
- Leibniz-Institute for Solid State and Materials Research (IFW Dresden) , D-01171 Dresden , Germany .
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47
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Jiao M, Song W, Qian HJ, Wang Y, Wu Z, Irle S, Morokuma K. QM/MD studies on graphene growth from small islands on the Ni(111) surface. NANOSCALE 2016; 8:3067-3074. [PMID: 26785739 DOI: 10.1039/c5nr07680c] [Citation(s) in RCA: 8] [Impact Index Per Article: 1.0] [Reference Citation Analysis] [Abstract] [Track Full Text] [Subscribe] [Scholar Register] [Indexed: 06/05/2023]
Abstract
Quantum chemical molecular dynamics simulations of graphene growth from small island precursors in different carbon nucleation densities on the Ni(111) surface at high temperatures have been conducted. The results indicate that small islands are not static, i.e. lateral diffusion and vertical fluctuation are frequently observed. In the case of low carbon nucleation density, carbon atoms or small carbon patches diffuse and attach to the edge of the nuclei to expand the size of the growing carbon network. The growth of graphene precursors is accompanied by the corresponding changes in the bonding of nickel atoms with the precipitation of subsurface carbon atoms. This is because the carbon-carbon interaction is stronger than the nickel-carbon interaction. In the case of high carbon nucleation densities, the dominant ripening mechanism depends on different growth stages. In the initial stage, the coalescence of carbon islands takes place via the Smoluchowski ripening mechanism. In the later stage the Smoluchowski ripening process is damped owing to the higher diffusion barrier of larger clusters and the restriction of movement by self-assembled nickel step edges. The cross-linking mechanism eventually takes over by the coalescence of extended polyyne chains between graphene islands. In either case, the Ostwald ripening process is not found in our molecular dynamics simulations due to the stability of carbon-carbon bonds within the islands. These investigations should be instructive to the control of graphene growth in experiments.
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Affiliation(s)
- Menggai Jiao
- State Key Laboratory of Rare Earth Resource Utilization, Changchun Institute of Applied Chemistry, Chinese Academy of Sciences, Changchun 130022, China. and University of Chinese Academy of Sciences, Beijing 100049, China
| | - Wei Song
- Physics and Electronic Engineering Department, Xinxiang University, Xinxiang, 453003, China
| | - Hu-Jun Qian
- State Key Laboratory of Theoretical and Computational Chemistry, Institute of Theoretical Chemistry, Jilin University, Changchun 130023, China
| | - Ying Wang
- State Key Laboratory of Rare Earth Resource Utilization, Changchun Institute of Applied Chemistry, Chinese Academy of Sciences, Changchun 130022, China.
| | - Zhijian Wu
- State Key Laboratory of Rare Earth Resource Utilization, Changchun Institute of Applied Chemistry, Chinese Academy of Sciences, Changchun 130022, China.
| | - Stephan Irle
- Institute of Transformative Bio-Molecules (WPI-ITbM) and Department of Chemistry, Graduate School of Science, Nagoya University, Nagoya 464-8602, Japan
| | - Keiji Morokuma
- Fukui Institute for Fundamental Chemistry, Kyoto University, Kyoto 606-8103, Japan
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48
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Ohta Y. Possible mechanism of BN fullerene formation from a boron cluster: Density-functional tight-binding molecular dynamics simulations. J Comput Chem 2016; 37:886-95. [PMID: 26748592 DOI: 10.1002/jcc.24287] [Citation(s) in RCA: 11] [Impact Index Per Article: 1.4] [Reference Citation Analysis] [Abstract] [Key Words] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Received: 09/16/2015] [Revised: 11/10/2015] [Accepted: 12/01/2015] [Indexed: 12/20/2022]
Abstract
We simulate the formation of a BN fullerene from an amorphous B cluster at 2000 K by quantum mechanical molecular dynamics based on the density-functional tight-binding method. We run 30 trajectories 200 ps in length, where N atoms are supplied around the target cluster, which is initially an amorphous B36 cluster. Most of the incident N atoms are promptly incorporated into the target cluster to form B-N-B bridges or NB3 pyramidal local substructures. BN fullerene formation is initiated by alternating BN ring condensation. Spontaneous atomic rearrangement and N2 dissociation lead to the construction of an sp(2) single-shelled structure, during which the BN cluster undergoes a transition from a liquid-like to a solid-like state. Continual atomic rearrangement and sporadic N2 dissociation decrease the number of defective rings in the BN cluster and increase the number of six-membered rings, forming a more regular shell structure. The number of four-membered rings tends to remain constant, and contributes to more ordered isolated-tetragon-rule ring placement.
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Affiliation(s)
- Y Ohta
- Department of Chemistry, Faculty of Science, Nara Women's University, Kitauoya-nishi-Machi, Nara, 630-8506, Japan
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49
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Remya K, Suresh CH. Carbon rings: a DFT study on geometry, aromaticity, intermolecular carbon–carbon interactions and stability. RSC Adv 2016. [DOI: 10.1039/c6ra06833b] [Citation(s) in RCA: 24] [Impact Index Per Article: 3.0] [Reference Citation Analysis] [Abstract] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Indexed: 11/21/2022] Open
Abstract
Strong complimentary electrostatic interactions lead to large number of C⋯C interactions in doubly antiaromatic C4N dimers while the delocalized system of π electrons in doubly aromatic C4N+2 dimers suggest very few intermolecular C⋯C interactions.
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Affiliation(s)
- Karunakaran Remya
- Chemical Sciences and Technology Division
- CSIR-National Institute for Interdisciplinary Science and Technology
- Trivandrum
- India
| | - Cherumuttathu H. Suresh
- Chemical Sciences and Technology Division
- CSIR-National Institute for Interdisciplinary Science and Technology
- Trivandrum
- India
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50
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Watanabe HC, Banno M, Sakurai M. An adaptive quantum mechanics/molecular mechanics method for the infrared spectrum of water: incorporation of the quantum effect between solute and solvent. Phys Chem Chem Phys 2016; 18:7318-33. [DOI: 10.1039/c5cp07136d] [Citation(s) in RCA: 10] [Impact Index Per Article: 1.3] [Reference Citation Analysis] [Abstract] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Indexed: 11/21/2022]
Abstract
Quantum effects in solute–solvent interactions, such as the many-body effect and the dipole-induced dipole, are known to be critical factors influencing the infrared spectra of species in the liquid phase.
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Affiliation(s)
- Hiroshi C. Watanabe
- Research Center for Advanced Science and Technology
- The University of Tokyo
- Meguro-ku
- Japan
| | - Misa Banno
- Center for Biological Resources and Informatics
- Tokyo Institute of Technology
- Midori-ku
- Japan
| | - Minoru Sakurai
- Center for Biological Resources and Informatics
- Tokyo Institute of Technology
- Midori-ku
- Japan
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