1
|
Shettar SS, Bagewadi ZK, Yunus Khan T, Mohamed Shamsudeen S, Kolvekar HN. Biochemical characterization of immobilized recombinant subtilisin and synthesis and functional characterization of recombinant subtilisin capped silver and zinc oxide nanoparticles. Saudi J Biol Sci 2024; 31:104009. [PMID: 38766505 PMCID: PMC11101740 DOI: 10.1016/j.sjbs.2024.104009] [Citation(s) in RCA: 0] [Impact Index Per Article: 0] [Reference Citation Analysis] [Abstract] [Key Words] [Track Full Text] [Download PDF] [Figures] [Journal Information] [Subscribe] [Scholar Register] [Received: 04/08/2024] [Revised: 04/27/2024] [Accepted: 05/03/2024] [Indexed: 05/22/2024] Open
Abstract
This pioneering research explores the transformative potential of recombinant subtilisin, emphasizing its strategic immobilization and nanoparticle synthesis to elevate both stability and therapeutic efficacy. Achieving an impressive 95.25 % immobilization yield with 3 % alginate composed of sodium along with 0.2 M CaCl2 indicates heightened pH levels and thermal resistance, with optimal action around pH 10 as well as 80 °C temperature. Notably, the Ca-alginate-immobilized subtilisin exhibits exceptional storage longevity and recyclability, affirming its practical viability. Comprehensive analyses of the recombinant subtilisin under diverse conditions underscore its adaptability, reflected in kinetic enhancements with increased Vmax (10.7 ± 15 × 103 U/mg) and decreased Km (0.19 ± 0.3 mM) values post-immobilization using N-Suc-F-A-A-F-pNA. UV-visible spectroscopy confirms the successful capping of nanoparticles made of Ag and ZnO by recombinant subtilisin, imparting profound antibacterial efficacy against diverse organisms and compelling antioxidant properties. Cytotoxicity was detected against the MCF-7 breast cancer line of cells, exhibiting IC50 concentrations at 8.87 as well as 14.52 µg/mL of AgNP as well as ZnONP, correspondingly, indicating promising anticancer potential. Rigorous characterization, including FTIR, SEM-EDS, TGA and AFM robustly validate the properties of the capped nanoparticles. Beyond therapeutic implications, the investigation explores industrial applications, revealing the versatility of recombinant subtilisin in dehairing, blood clot dissolution, biosurfactant activity, and blood stain removal. In summary, this research unfolds the exceptional promise of recombinant subtilisin and its nanoparticles, presenting compelling opportunities for diverse therapeutic applications in medicine. These findings contribute substantively to biotechnology and healthcare and stimulate avenues for further innovation and exploration.
Collapse
Affiliation(s)
- Shreya S. Shettar
- Department of Biotechnology, KLE Technological University, Hubballi, Karnataka 580031, India
| | - Zabin K. Bagewadi
- Department of Biotechnology, KLE Technological University, Hubballi, Karnataka 580031, India
| | - T.M. Yunus Khan
- Department of Mechanical Engineering, College of Engineering, King Khalid University, Abha 61421, Saudi Arabia
| | - Shaik Mohamed Shamsudeen
- Department of Diagnostic Dental Science and Oral Biology, College of Dentistry, King Khalid University, Abha 61421, Saudi Arabia
| | - Harsh N. Kolvekar
- Department of Biotechnology, KLE Technological University, Hubballi, Karnataka 580031, India
| |
Collapse
|
2
|
Seiler M, Stock S, Drews A. pH-dependent electrostatic interactions between enzymes and nanoparticles in Pickering emulsions - Influence on activity and droplet size. J Biotechnol 2024; 382:28-36. [PMID: 38244698 DOI: 10.1016/j.jbiotec.2024.01.006] [Citation(s) in RCA: 0] [Impact Index Per Article: 0] [Reference Citation Analysis] [Abstract] [Key Words] [MESH Headings] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Received: 11/02/2023] [Revised: 01/11/2024] [Accepted: 01/14/2024] [Indexed: 01/22/2024]
Abstract
Pickering emulsions (PE) are liquid-liquid systems that are stabilized by solid (nano)particles at the fluid interface. They offer higher stability, easier separation and lower toxicity compared to classical emulsions stabilized by surfactants. Common applications range from food science to drug delivery. In the last decade they have become of more interest in the field of multiphasic biocatalysis. First, this study aims to present the influence of pH, salt strength and particle charge on enzyme activity. The different behavior of two lipases (CaLA and CRL) is shown. While the activity optimum of CaLA changed from pH 6.5 to pH 5 by applying particles with negative instead of positive surface charge, the CRL activity optimum stayed at pH 5-5.5. This enables particle charge as an additional parameter to optimize biocatalytic reactions in PEs. Second, the resulting drop sizes were measured to elucidate further interactions between the enzymes and particles in PEs. Drop sizes in PEs prepared with CaLA were not influenced by pH, but increased for positively and decreased for negatively charged particles upon the addition of CaLA. Electrostatic attraction between particles and CRL increased the droplet diameter from 10 μm up to 30 μm and therefore destabilized the PE for both particle types.
Collapse
Affiliation(s)
- Maximilian Seiler
- Process Engineering at Life Science Engineering, Wilhelminenhofstraße 75 A, Berlin, Germany.
| | - Sebastian Stock
- Department of Physics, Soft Matter at Interfaces, Technische Universität Darmstadt, Darmstadt, Germany
| | - Anja Drews
- Process Engineering at Life Science Engineering, Wilhelminenhofstraße 75 A, Berlin, Germany
| |
Collapse
|
3
|
Wan Y, Zhou J, Ni J, Cai Y, Cohen Stuart M, Wang J. Electrostatically Mediated In Situ Polymerization for Enzyme Immobilization and Activation. Biomacromolecules 2024; 25:809-818. [PMID: 38181098 DOI: 10.1021/acs.biomac.3c00993] [Citation(s) in RCA: 0] [Impact Index Per Article: 0] [Reference Citation Analysis] [Abstract] [MESH Headings] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Indexed: 01/07/2024]
Abstract
Enzyme immobilization in nanoparticles is of interest for boosting their catalytic applications, yet rational approaches to designs achieving both high enzyme loading and activation remain a challenge. Herein, we report an electrostatically mediated in situ polymerization strategy that simultaneously realizes enzyme immobilization and activation. This was achieved by copolymerizing cationic monomers with a cross-linker in the presence of the enzyme lipase (anionic) as the template, which produces enzyme-loaded nanogels. The effects of different control factors such as pH, lipase dosage, and cross-linker fraction on nanogel formation are investigated systematically, and optimal conditions for enzyme loading and activation have been determined. A central finding is that the cationic polymer network of the nanogel creates a favorable environment that not only protects the enzyme but also boosts enzymatic activity nearly 2-fold as compared to free lipase. The nanogels improve the stability of the lipase to tolerate a broader working range of pH (5.5-8.5) and temperature (25-70 °C) and allow recycling such that after six cycles of reaction, 70% of the initial activity is conserved. The established fabrication strategy can be applied generally to different cationic monomers, and most of these nanogels exhibit adequate immobilization and activation of lipase. Our study confirms that in situ polymerization based on electrostatic interaction provides a facile and robust strategy for enzyme immobilization and activation. The wide variety of ionic monomers, therefore, features great potential for developing functional platforms toward satisfying enzyme immobilization and demanding applications.
Collapse
Affiliation(s)
- Yuting Wan
- State-Key Laboratory of Chemical Engineering and Shanghai Key Laboratory of Multiphase Materials Chemical Engineering, East China University of Science and Technology, 130 Meilong Road, Shanghai 200237, People's Republic of China
| | - Jin Zhou
- State-Key Laboratory of Chemical Engineering and Shanghai Key Laboratory of Multiphase Materials Chemical Engineering, East China University of Science and Technology, 130 Meilong Road, Shanghai 200237, People's Republic of China
| | - Jiaying Ni
- State-Key Laboratory of Chemical Engineering and Shanghai Key Laboratory of Multiphase Materials Chemical Engineering, East China University of Science and Technology, 130 Meilong Road, Shanghai 200237, People's Republic of China
| | - Ying Cai
- State-Key Laboratory of Chemical Engineering and Shanghai Key Laboratory of Multiphase Materials Chemical Engineering, East China University of Science and Technology, 130 Meilong Road, Shanghai 200237, People's Republic of China
| | - Martien Cohen Stuart
- State-Key Laboratory of Chemical Engineering and Shanghai Key Laboratory of Multiphase Materials Chemical Engineering, East China University of Science and Technology, 130 Meilong Road, Shanghai 200237, People's Republic of China
| | - Junyou Wang
- State-Key Laboratory of Chemical Engineering and Shanghai Key Laboratory of Multiphase Materials Chemical Engineering, East China University of Science and Technology, 130 Meilong Road, Shanghai 200237, People's Republic of China
| |
Collapse
|
4
|
Selim MS, Mounier MM, Abdelhamid SA, Hamed AA, Abo Elsoud MM, Mohamed SS. Characterization, modeling, and anticancer activity of L.arginase production from marine Bacillus licheniformis OF2. BMC Biotechnol 2024; 24:6. [PMID: 38273334 PMCID: PMC10811824 DOI: 10.1186/s12896-024-00829-6] [Citation(s) in RCA: 0] [Impact Index Per Article: 0] [Reference Citation Analysis] [Abstract] [Key Words] [MESH Headings] [Grants] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Received: 11/12/2023] [Accepted: 01/03/2024] [Indexed: 01/27/2024] Open
Abstract
BACKGROUND L-arginase, is a powerful anticancer that hydrolyzes L-arginine to L-ornithine and urea. This enzyme is widely distributed and expressed in organisms like plants, fungi, however very scarce from bacteria. Our study is based on isolating, purifying, and screening the marine bacteria that can produce arginase. RESULTS The highest arginase producing bacteria will be identified by using microbiological and molecular biology methods as Bacillus licheniformis OF2. Characterization of arginase is the objective of this study. The activity of enzyme was screened, and estimated beside partial sequencing of arginase gene was analyzed. In silico homology modeling was applied to generate the protein's 3D structure, and COACH and COFACTOR were applied to determine the protein's binding sites and biological annotations based on the I-TASSER structure prediction. The purified enzyme was undergone an in vitro anticancer test. CONCLUSIONS L-arginase demonstrated more strong anti-cancer cells with an IC50 of 21.4 ug/ml in a dose-dependent manner. L-arginase underwent another investigation for its impact on the caspase 7 and BCL2 family of proteins (BCL2, Bax, and Bax/Bcl2). Through cell arrest in the G1/S phase, L-arginase signals the apoptotic cascade, which is supported by a flow cytometry analysis of cell cycle phases.
Collapse
Affiliation(s)
- Manal S Selim
- Microbial Biotechnology Department, National Research Centre, Cairo, Egypt
| | - Marwa M Mounier
- Pharmacognosy Department, National Research Centre, Cairo, Egypt
| | | | | | | | - Sahar S Mohamed
- Microbial Biotechnology Department, National Research Centre, Cairo, Egypt
| |
Collapse
|
5
|
Martin Del Campo M, Gómez-Secundino O, Camacho-Ruíz RM, Mateos Díaz JC, Müller-Santos M, Rodríguez JA. Effects of kosmotropic, chaotropic, and neutral salts on Candida antarctica B lipase: An analysis of the secondary structure and its hydrolytic activity on triglycerides. Biochim Biophys Acta Mol Cell Biol Lipids 2023; 1868:159380. [PMID: 37591327 DOI: 10.1016/j.bbalip.2023.159380] [Citation(s) in RCA: 0] [Impact Index Per Article: 0] [Reference Citation Analysis] [Abstract] [Key Words] [MESH Headings] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Received: 04/11/2023] [Revised: 07/22/2023] [Accepted: 08/10/2023] [Indexed: 08/19/2023]
Abstract
The effects of different concentrations of Hofmeister salts on the hydrolytic activity on triglycerides and the secondary structure of lipase B from Candida antarctica (CALB) were investigated. Structural changes after short- and long-time incubation at high salt concentrations were determined using circular dichroism (CD), fluorescence, and RMSD-RMSF simulations. At 5.2 M NaCl, the hydrolytic activity of CALB on tributyrin (TC4) and trioctanoin (TC8) was enhanced by 1.5 (from 817 ± 3.9 to 1228 ± 4.3 U/mg)- and 8.7 (from 25 ± 0.3 to 218 ± 2.3 U/mg)-folds compared with 0.15 M NaCl, respectively at pH 7.0 and 40 °C. An activity activation was seen with other salts tested; however, long-time incubation (24 h) did not result in retention of the activation effect for any of the salts tested. Secondary structure CD and fluorescence spectra showed that long-time incubation with NaCl, KCl, and CsCl provokes a compact structure without loss of native conformation, whereas chaotropic LiCl and CaCl2 induced an increase in the α-helical content, and kosmotropic Na2SO4 provoked a molten globule state with rich β-sheet content. The RMSD-RMSF simulation agreed with the CD analysis, highlighting a principal salt-induced effect at the α-helix 5 region, promoting two different conformational states (open and closed) depending on the type and concentration of salt. Lastly, an increase in the interfacial tension occurred when high salt concentrations were added to the reaction media, affecting the catalytic properties. The results indicate that high-salt environments, such as 2-5.2 M NaCl, can be used to increase the lipolytic activity of CALB on TC4 and TC8.
Collapse
Affiliation(s)
- Martha Martin Del Campo
- Biotecnología Industrial, Centro de Investigación y Asistencia en Tecnología y Diseño del Estado de Jalisco A.C, Camino el arenero 1227, El Bajío del arenal, 45019 Zapopan, Jalisco, Mexico; Fundamentos del Conocimiento, Centro Universitario del Norte, Universidad de Guadalajara, 46200 Colotlán, Jalisco, Mexico.
| | - Osvaldo Gómez-Secundino
- Biotecnología Industrial, Centro de Investigación y Asistencia en Tecnología y Diseño del Estado de Jalisco A.C, Camino el arenero 1227, El Bajío del arenal, 45019 Zapopan, Jalisco, Mexico.
| | - Rosa M Camacho-Ruíz
- Biotecnología Industrial, Centro de Investigación y Asistencia en Tecnología y Diseño del Estado de Jalisco A.C, Camino el arenero 1227, El Bajío del arenal, 45019 Zapopan, Jalisco, Mexico.
| | - Juan C Mateos Díaz
- Biotecnología Industrial, Centro de Investigación y Asistencia en Tecnología y Diseño del Estado de Jalisco A.C, Camino el arenero 1227, El Bajío del arenal, 45019 Zapopan, Jalisco, Mexico.
| | - Marcelo Müller-Santos
- Departamento de Bioquímica e Biología Molecular, Universidade Federal do Paraná, CP 19046, CEP 81531-980 Curitiba, PR, Brazil.
| | - Jorge A Rodríguez
- Biotecnología Industrial, Centro de Investigación y Asistencia en Tecnología y Diseño del Estado de Jalisco A.C, Camino el arenero 1227, El Bajío del arenal, 45019 Zapopan, Jalisco, Mexico.
| |
Collapse
|
6
|
Chatzigeorgiou S, Jílková J, Korecká L, Janyšková R, Hermannová M, Šimek M, Čožíková D, Slováková M, Bílková Z, Bobek J, Černý Z, Čihák M, Velebný V. Preparation of hyaluronan oligosaccharides by a prokaryotic beta-glucuronidase: Characterization of free and immobilized forms of the enzyme. Carbohydr Polym 2023; 317:121078. [PMID: 37364952 DOI: 10.1016/j.carbpol.2023.121078] [Citation(s) in RCA: 0] [Impact Index Per Article: 0] [Reference Citation Analysis] [Abstract] [Key Words] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Received: 03/09/2023] [Revised: 05/26/2023] [Accepted: 05/29/2023] [Indexed: 06/28/2023]
Abstract
Popularity of hyaluronan (HA) in the cosmetics and pharmaceutical industries, led to the investigation and development of new HA-based materials, with enzymes playing a key role. Beta-D-glucuronidases catalyze the hydrolysis of a beta-D-glucuronic acid residue from the non-reducing end of various substrates. However, lack of specificity towards HA for most beta-D-glucuronidases, in addition to the high cost and low purity of those active on HA, have prevented their widespread application. In this study, we investigated a recombinant beta-glucuronidase from Bacteroides fragilis (rBfGUS). We demonstrated the rBfGUS's activity on native, modified, and derivatized HA oligosaccharides (oHAs). Using chromogenic beta-glucuronidase substrate and oHAs, we characterized the enzyme's optimal conditions and kinetic parameters. Additionally, we evaluated rBfGUS's activity towards oHAs of various sizes and types. To increase reusability and ensure the preparation of enzyme-free oHA products, rBfGUS was immobilized on two types of magnetic macroporous bead cellulose particles. Both immobilized forms of rBfGUS demonstrated suitable operational and storage stabilities, and their activity parameters were comparable to the free form. Our findings suggest that native and derivatized oHAs can be prepared using this bacterial beta-glucuronidase, and a novel biocatalyst with enhanced operational parameters has been developed with a potential for industrial use.
Collapse
Affiliation(s)
- Sofia Chatzigeorgiou
- Contipro a.s., Dolní Dobrouč 401, 56102 Dolní Dobrouč, Czech Republic; Institute of Immunology and Microbiology, 1st Faculty of Medicine, Charles University, Prague, Czech Republic
| | - Jana Jílková
- Contipro a.s., Dolní Dobrouč 401, 56102 Dolní Dobrouč, Czech Republic; Department of Biochemistry, Faculty of Science, Masaryk University, Kamenice 5, 62500 Brno, Czech Republic.
| | - Lucie Korecká
- Department of Biological and Biochemical Sciences, Faculty of Chemical Technology, University of Pardubice, Studentska 573, 532 10 Pardubice, Czech Republic.
| | - Radka Janyšková
- Contipro a.s., Dolní Dobrouč 401, 56102 Dolní Dobrouč, Czech Republic
| | | | - Matej Šimek
- Contipro a.s., Dolní Dobrouč 401, 56102 Dolní Dobrouč, Czech Republic
| | - Dagmar Čožíková
- Contipro a.s., Dolní Dobrouč 401, 56102 Dolní Dobrouč, Czech Republic
| | - Marcela Slováková
- Department of Biological and Biochemical Sciences, Faculty of Chemical Technology, University of Pardubice, Studentska 573, 532 10 Pardubice, Czech Republic
| | - Zuzana Bílková
- Department of Biological and Biochemical Sciences, Faculty of Chemical Technology, University of Pardubice, Studentska 573, 532 10 Pardubice, Czech Republic
| | - Jan Bobek
- Institute of Immunology and Microbiology, 1st Faculty of Medicine, Charles University, Prague, Czech Republic; Faculty of Science, Jan Evangelista Purkyně University in Ústí nad Labem, České mládeže 8, 400 96 Ústí nad Labem, Czech Republic; Faculty of Biomedical Engineering, Czech Technical University in Prague, Sítná sq. 3105, 272 01 Kladno, Czech Republic
| | - Zbyněk Černý
- Contipro a.s., Dolní Dobrouč 401, 56102 Dolní Dobrouč, Czech Republic
| | - Matouš Čihák
- Contipro a.s., Dolní Dobrouč 401, 56102 Dolní Dobrouč, Czech Republic; Institute of Immunology and Microbiology, 1st Faculty of Medicine, Charles University, Prague, Czech Republic
| | - Vladimír Velebný
- Contipro a.s., Dolní Dobrouč 401, 56102 Dolní Dobrouč, Czech Republic
| |
Collapse
|
7
|
Rana AM, Devreese B, De Waele S, Sodhozai AR, Rozi M, Rashid S, Hameed A, Ali N. Immobilization and docking studies of Carlsberg subtilisin for application in poultry industry. PLoS One 2023; 18:e0269717. [PMID: 37585472 PMCID: PMC10431679 DOI: 10.1371/journal.pone.0269717] [Citation(s) in RCA: 0] [Impact Index Per Article: 0] [Reference Citation Analysis] [Abstract] [MESH Headings] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Received: 05/05/2021] [Accepted: 05/24/2022] [Indexed: 08/18/2023] Open
Abstract
Carlsberg subtilisin from Bacillus licheniformis PB1 was investigated as a potential feed supplement, through immobilizing on bentonite for improving the growth rate of broilers. Initially, the pre-optimized and partially-purified protease was extracted and characterized using SDS-PAGE with MW 27.0 KDa. The MALDI-TOF-MS/MS spectrum confirmed a tryptic peptide peak with m/z 1108.496 referring to the Carlsberg subtilisin as a protein-digesting enzyme with alkaline nature. The highest free enzyme activity (30 U/mg) was observed at 50°C, 1 M potassium phosphate, and pH 8.0. the enhanced stability was observed when the enzyme was adsorbed to an inert solid support with 86.39 ± 4.36% activity retention under 20 optimized conditions. Additionally, the dried immobilized enzyme exhibited only a 5% activity loss after two-week storage at room temperature. Structural modeling (Docking) revealed that hydrophobic interactions between bentonite and amino acids surrounding the catalytic triad keep the enzyme structure intact upon drying at RT. The prominent hygroscopic nature of bentonite facilitated protein structure retention upon drying. During a 46-days study, supplementation of boilers' feed with the subtilisin-bentonite complex promoted significant weight gain i.e. 15.03% in contrast to positive control (p = 0.001).
Collapse
Affiliation(s)
- Anum Munir Rana
- Department of Microbiology, Biological Sciences, Quaid-i-Azam University, Islamabad, Pakistan
| | - Bart Devreese
- Laboratory of Microbiology–Protein Research Unit, Ghent University, Karel Lodewijk Ghent, Belgium
| | - Stijn De Waele
- Laboratory of Microbiology–Protein Research Unit, Ghent University, Karel Lodewijk Ghent, Belgium
| | - Asma Rabbani Sodhozai
- Department of Microbiology, Biological Sciences, Quaid-i-Azam University, Islamabad, Pakistan
| | - Maryam Rozi
- National Center for Bioinformatics, Quaid-i-Azam University, Islamabad, Pakistan
| | - Sajid Rashid
- National Center for Bioinformatics, Quaid-i-Azam University, Islamabad, Pakistan
| | - Abdul Hameed
- Department of Microbiology, Biological Sciences, Quaid-i-Azam University, Islamabad, Pakistan
| | - Naeem Ali
- Department of Microbiology, Biological Sciences, Quaid-i-Azam University, Islamabad, Pakistan
| |
Collapse
|
8
|
Li W, Gao N, Zhang W, Feng K, Zhou K, Zhao H, He G, Liu W, Li G. Visual demonstration and prediction of the Hofmeister series based on a poly(ionic liquid) photonic array. NANOSCALE 2023. [PMID: 37194393 DOI: 10.1039/d3nr01531a] [Citation(s) in RCA: 0] [Impact Index Per Article: 0] [Reference Citation Analysis] [Abstract] [Track Full Text] [Subscribe] [Scholar Register] [Indexed: 05/18/2023]
Abstract
The Hofmeister effect and associated Hofmeister series (HS) are ubiquitous in physicochemical phenomena and have demonstrated fundamental importance in a myriad of fields ranging from chemistry to biology. Visualization of the HS not only helps to straightforwardly understand the underpinning mechanism, but also enables the prediction of new ion positions in the HS and directs the applications of the Hofmeister effect. Owing to the difficulties of sensing and reporting complete multiple and subtle inter- and intramolecular interactions involved in the Hofmeister effect, facile and accurate visual demonstration and prediction of the HS remain highly challenging. Herein, a poly(ionic liquid) (PIL)-based photonic array containing 6 inverse opal microspheres was rationally constructed to efficiently sense and report the ion effects of the HS. The PILs can not only directly conjugate with HS ions due to their ion-exchange properties, but also provide sufficient noncovalent binding diversity with these ions. Meanwhile, subtle PIL-ion interactions can be sensitively amplified to optical signals owing to their photonic structures. Therefore, synergistic integration of PILs and photonic structures gives rise to accurate visualization of the ion effect of the HS, as demonstrated by correctly ranking 7 common anions. More importantly, assisted by principal component analysis (PCA), the developed PIL photonic array can serve as a general platform to facilely, accurately, and robustly predict the HS positions of an unprecedented amount of important and useful anions and cations. These findings indicate that the PIL photonic platform is very promising for addressing challenges in the visual demonstration and prediction of HS and promoting a molecular-level understanding of the Hoffmeister effect.
Collapse
Affiliation(s)
- Wenyun Li
- Department of Chemistry, Key Lab of Organic Optoelectronics & Molecular Engineering, Tsinghua University, Beijing 100084, P. R. China.
| | - Ning Gao
- Department of Chemistry, Key Lab of Organic Optoelectronics & Molecular Engineering, Tsinghua University, Beijing 100084, P. R. China.
| | - Wanlin Zhang
- Department of Chemistry, Key Lab of Organic Optoelectronics & Molecular Engineering, Tsinghua University, Beijing 100084, P. R. China.
| | - Kai Feng
- Department of Chemistry, Key Lab of Organic Optoelectronics & Molecular Engineering, Tsinghua University, Beijing 100084, P. R. China.
| | - Kang Zhou
- Department of Chemistry, Key Lab of Organic Optoelectronics & Molecular Engineering, Tsinghua University, Beijing 100084, P. R. China.
| | - Hongwei Zhao
- Department of Chemistry, Key Lab of Organic Optoelectronics & Molecular Engineering, Tsinghua University, Beijing 100084, P. R. China.
| | - Guokang He
- Department of Chemistry, Key Lab of Organic Optoelectronics & Molecular Engineering, Tsinghua University, Beijing 100084, P. R. China.
| | - Weigang Liu
- Department of Chemistry, Key Lab of Organic Optoelectronics & Molecular Engineering, Tsinghua University, Beijing 100084, P. R. China.
| | - Guangtao Li
- Department of Chemistry, Key Lab of Organic Optoelectronics & Molecular Engineering, Tsinghua University, Beijing 100084, P. R. China.
| |
Collapse
|
9
|
Bourke T, Gregory KP, Page AJ. Hofmeister effects influence bulk nanostructure in a protic ionic liquid. J Colloid Interface Sci 2023; 645:420-428. [PMID: 37156150 DOI: 10.1016/j.jcis.2023.04.052] [Citation(s) in RCA: 0] [Impact Index Per Article: 0] [Reference Citation Analysis] [Abstract] [Key Words] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Received: 01/29/2023] [Revised: 04/04/2023] [Accepted: 04/12/2023] [Indexed: 05/10/2023]
Abstract
HYPOTHESIS The origins and behaviour of specific ion effects have been studied in water for more than a century, and more recently in nonaqueous molecular solvents. However, the impacts of specific ion effects on more complex solvents such as nanostructured ionic liquids remains unclear. Here, we hypothesise that the influence of dissolved ions on the hydrogen bonding in the nanostructured ionic liquid propylammonium nitrate (PAN) constitutes a specific ion effect. EXPERIMENTS We performed molecular dynamics simulations of bulk PAN and 1-50 mol% PAN-PAX (X = halide anions F-, Cl-, Br-, I-) and PAN-YNO3 (Y = alkali metal cations, Li+, Na+, K+ and Rb+) solutions to investigate how monovalent salts influence the bulk nanostructure in PAN. FINDINGS The key structural characteristic in PAN is a well-defined hydrogen bond network formed within the polar and non-polar domains in its nanostructure. We show that dissolved alkali metal cations and halide anions have significant and unique influences on the strength of this network. Cations (Li+, Na+, K+ and Rb+) consistently promote hydrogen bonding in the PAN polar domain. Conversely, the influence of halide anions (F-, Cl-, Br-, I-) is ion specific; while F- disrupts PAN hydrogen bonding, I- promotes it. The manipulation of PAN hydrogen bonding therefore constitutes a specific ion effect - i.e. a physicochemical phenomena caused by the presence of dissolved ions, which are dependent on these ions' identity. We analyse these results using a recently proposed predictor of specific ion effects developed for molecular solvents, and show that it is also capable of rationalising specific ion effects in the more complex solvent environment of an ionic liquid.
Collapse
Affiliation(s)
- Thomas Bourke
- Discipline of Chemistry, The University of Newcastle, Callaghan, NSW 2308, Australia
| | - Kasimir P Gregory
- Discipline of Chemistry, The University of Newcastle, Callaghan, NSW 2308, Australia; Department of Materials Physics, Research School of Physics, The Australian National University, Canberra, ACT 0200, Australia; Division of Biomedical Science and Biochemistry, Research School of Biology, The Australian National University, Canberra, ACT 0200, Australia
| | - Alister J Page
- Discipline of Chemistry, The University of Newcastle, Callaghan, NSW 2308, Australia.
| |
Collapse
|
10
|
Production of the Food Enzyme Acetolactate Decarboxylase (ALDC) from Bacillus subtilis ICA 56 Using Agro-Industrial Residues as Feedstock. FERMENTATION-BASEL 2022. [DOI: 10.3390/fermentation8120675] [Citation(s) in RCA: 0] [Impact Index Per Article: 0] [Reference Citation Analysis] [Abstract] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Indexed: 11/29/2022]
Abstract
During the beer brewing process, some compounds are formed in the primary fermentation step and may affect the final quality of beer. These compounds, called off flavors, such as diacetyl, are produced during fermentation and are related to a buttery taste. The use of acetolactate decarboxylase (ALDC) in the traditional beer brewing process may significantly increase productivity since it allows for a faster decrease in the adverse flavor caused by diacetyl. However, production costs directly impact its application. For this reason, we analyzed the effect of different cultivation media on ALDC production by Bacillus subtilis ICA 56 and process economics. Different carbon and nitrogen sources, including agro-industrial residues, were evaluated. The best result was obtained using sugarcane molasses and corn steep solids (CSS), allowing a 74% reduction in ALDC production cost and an enzyme activity of 4.43 ± 0.12 U·mL−1. The enzymatic extract was then characterized, showing an optimum temperature at 40 °C and stability at different pH levels, being able to maintain more than 80% of its catalytic capacity between pH values of 3.6 and 7.0, with higher enzymatic activity at pH 6.0 (50 mM MES Buffer), reaching an ALDC activity of 5.30 ± 0.06 U·mL−1.
Collapse
|
11
|
Effect of electrolytes on the sol-gel phase transitions in a Pluronic F127/carboxymethyl cellulose aqueous system: phase map, rheology and NMR self-diffusion study. Eur Polym J 2022. [DOI: 10.1016/j.eurpolymj.2022.111707] [Citation(s) in RCA: 0] [Impact Index Per Article: 0] [Reference Citation Analysis] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Indexed: 11/15/2022]
|
12
|
Specific Ion Effects on the Enzymatic Degradation of Polyester Films. CHINESE JOURNAL OF POLYMER SCIENCE 2022. [DOI: 10.1007/s10118-022-2869-z] [Citation(s) in RCA: 0] [Impact Index Per Article: 0] [Reference Citation Analysis] [Track Full Text] [Subscribe] [Scholar Register] [Indexed: 11/06/2022]
|
13
|
Dušeková E, Berta M, Sedláková D, Řeha D, Dzurillová V, Shaposhnikova A, Fadaei F, Tomková M, Minofar B, Sedlák E. Specific anion effect on properties of HRV 3C protease. Biophys Chem 2022; 287:106825. [PMID: 35597150 DOI: 10.1016/j.bpc.2022.106825] [Citation(s) in RCA: 1] [Impact Index Per Article: 0.5] [Reference Citation Analysis] [Abstract] [Key Words] [MESH Headings] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Received: 03/20/2022] [Revised: 04/19/2022] [Accepted: 05/07/2022] [Indexed: 12/12/2022]
Abstract
Specific salts effect is intensively studied from the prospective of modification of different physico-chemical properties of biomacromolecules. Limited knowledge of the specific salts effect on enzymes led us to address the influence of five sodium anions: sulfate, phosphate, chloride, bromide, and perchlorate, on catalytic and conformational properties of human rhinovirus-14 (HRV) 3C protease. The enzyme conformation was monitored by circular dichroism spectrum (CD) and by tyrosines fluorescence. Stability and flexibility of the enzyme have been analyzed by CD in the far-UV region, differential scanning calorimetry and molecular dynamics simulations, respectively. We showed significant influence of the anions on the enzyme properties in accordance with the Hofmeister effect. The HRV 3C protease in the presence of kosmotropic anions, in contrast with chaotropic anions, exhibits increased stability, rigidity. Correlations of stabilization effect of anions on the enzyme with their charge density and the rate constant of the enzyme with the viscosity B-coefficients of anions suggest direct interaction of the anions with HRV 3C protease. The role of stabilization and decreased fluctuation of the polypeptide chain of HRV 3C protease on its activation in the presence of kosmotropic anions is discussed within the frame of the macromolecular rate theory.
Collapse
Affiliation(s)
- Eva Dušeková
- Department of Biophysics, Faculty of Science, P. J. Šafárik University in Košice, Jesenná 5, 04154 Košice, Slovakia
| | - Martin Berta
- Department of Biophysics, Faculty of Science, P. J. Šafárik University in Košice, Jesenná 5, 04154 Košice, Slovakia
| | - Dagmar Sedláková
- Department of Biophysics, Faculty of Science, P. J. Šafárik University in Košice, Jesenná 5, 04154 Košice, Slovakia; Department of Biophysics, Institute of Experimental Physics, Slovak Academy of Sciences, Watsonova 47, 040 01 Košice, Slovakia
| | - David Řeha
- Faculty of Science, University of South Bohemia in České Budějovice, Branišovská 1645/31A, 37005 České Budějovice, Czech Republic
| | - Veronika Dzurillová
- Department of Biophysics, Faculty of Science, P. J. Šafárik University in Košice, Jesenná 5, 04154 Košice, Slovakia
| | - Anastasiia Shaposhnikova
- Faculty of Science, University of South Bohemia in České Budějovice, Branišovská 1645/31A, 37005 České Budějovice, Czech Republic; Laboratory of Structural Biology and Bioinformatics, Institute of Microbiology of the Czech Academy of Sciences, Zámek 136, 37333 Nové Hrady, Czech Republic
| | - Fatemeh Fadaei
- Faculty of Science, University of South Bohemia in České Budějovice, Branišovská 1645/31A, 37005 České Budějovice, Czech Republic; Laboratory of Structural Biology and Bioinformatics, Institute of Microbiology of the Czech Academy of Sciences, Zámek 136, 37333 Nové Hrady, Czech Republic
| | - Mária Tomková
- Centre for Interdisciplinary Biosciences, P. J. Šafárik University in Košice, Jesenná 5, 04154 Košice, Slovakia
| | - Babak Minofar
- Faculty of Science, University of South Bohemia in České Budějovice, Branišovská 1645/31A, 37005 České Budějovice, Czech Republic.
| | - Erik Sedlák
- Centre for Interdisciplinary Biosciences, P. J. Šafárik University in Košice, Jesenná 5, 04154 Košice, Slovakia.
| |
Collapse
|
14
|
Dušeková E, Garajová K, Yavaşer R, Tomková M, Sedláková D, Dzurillová V, Kulik N, Fadaei F, Shaposhnikova A, Minofar B, Sedlák E. Modulation of global stability, ligand binding and catalytic properties of trypsin by anions. Biophys Chem 2022; 288:106856. [PMID: 35872468 DOI: 10.1016/j.bpc.2022.106856] [Citation(s) in RCA: 0] [Impact Index Per Article: 0] [Reference Citation Analysis] [Abstract] [Key Words] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Received: 05/08/2022] [Revised: 07/02/2022] [Accepted: 07/13/2022] [Indexed: 12/01/2022]
Abstract
Specific salts effect is well-known on stability and solubility of proteins, however, relatively limited knowledge is known regarding the effect on catalytic properties of enzymes. Here, we examined the effect of four sodium anions on thermal stability and catalytic properties of trypsin and binding of the fluorescent probe, p-aminobenzamidine (PAB), to the enzyme. We show that the specific anions effect on trypsin properties agrees with the localization of the anions in the Hofmeister series. Thermal stability of trypsin, Tm, the affinity of the fluorescent probe to the binding site, Kd, and the rate constant, kcat, of trypsin-catalyzed hydrolysis of the substrate N-benzoyl-L-arginine ethyl ester (BAEE) increase with increasing kosmotropic character of anions in the order: perchlorate<bromide<chloride<sulfate, while the value of Michaelis constant, KM, decreases. Correlations between the values of Tm, Kd for PAB, kcat, and KM for BAEE in the presence of 1 M studied salts suggest interrelation among these parameters of the enzyme. Global stabilization as well as increased rigidity of trypsin is accompanied by strengthening of interaction with fluorescent probe PAB and in accordance with decreasing values of KM for the substrate BAEE. Strong correlations between parameters characterizing the trypsin properties with the charge densities of anions clearly indicate direct electrostatic interaction as a basis of the specific anion effect on the conformational and functional properties of the enzyme.
Collapse
Affiliation(s)
- Eva Dušeková
- Department of Biophysics, Faculty of Science, P. J. Šafárik University in Košice, Jesenná 5, 04154 Košice, Slovakia
| | - Katarína Garajová
- Department of Biochemistry, Faculty of Science, P. J. Šafárik University in Košice, Moyzesova 11, 04154 Košice, Slovakia
| | - Rukiye Yavaşer
- Department of Biochemistry, Faculty of Science, P. J. Šafárik University in Košice, Moyzesova 11, 04154 Košice, Slovakia; Chemistry Department, Faculty of Arts and Science, Aydın Adnan Menderes University, 09010 Aydın, Turkey
| | - Mária Tomková
- Center for Interdisciplinary Biosciences, P. J. Šafárik University in Košice, Jesenná 5, 04154 Košice, Slovakia
| | - Dagmar Sedláková
- Department of Biophysics, Institute of Experimental Physics, Slovak Academy of Sciences, Watsonova 47, 040 01 Košice, Slovakia
| | - Veronika Dzurillová
- Department of Biophysics, Faculty of Science, P. J. Šafárik University in Košice, Jesenná 5, 04154 Košice, Slovakia
| | - Natalia Kulik
- Faculty of Science, University of South Bohemia in České Budějovice, Branišovská 1645/31A, 37005 České Budějovice, Czech Republic
| | - Fatemeh Fadaei
- Faculty of Science, University of South Bohemia in České Budějovice, Branišovská 1645/31A, 37005 České Budějovice, Czech Republic; Laboratory of Structural Biology and Bioinformatics, Institute of Microbiology of the Czech Academy of Sciences, Zámek 136, 37333 Nové Hrady, Czech Republic
| | - Anastasiia Shaposhnikova
- Faculty of Science, University of South Bohemia in České Budějovice, Branišovská 1645/31A, 37005 České Budějovice, Czech Republic; Laboratory of Structural Biology and Bioinformatics, Institute of Microbiology of the Czech Academy of Sciences, Zámek 136, 37333 Nové Hrady, Czech Republic
| | - Babak Minofar
- Laboratory of Structural Biology and Bioinformatics, Institute of Microbiology of the Czech Academy of Sciences, Zámek 136, 37333 Nové Hrady, Czech Republic.
| | - Erik Sedlák
- Center for Interdisciplinary Biosciences, P. J. Šafárik University in Košice, Jesenná 5, 04154 Košice, Slovakia.
| |
Collapse
|
15
|
Hoog TG, Pawlak MR, Bachan BF, Engelhart AE. DNA G-quadruplexes are uniquely stable in the presence of denaturants and monovalent cations. Biochem Biophys Rep 2022; 30:101238. [PMID: 35243016 PMCID: PMC8885576 DOI: 10.1016/j.bbrep.2022.101238] [Citation(s) in RCA: 0] [Impact Index Per Article: 0] [Reference Citation Analysis] [Abstract] [Track Full Text] [Download PDF] [Figures] [Journal Information] [Subscribe] [Scholar Register] [Received: 12/05/2021] [Revised: 02/06/2022] [Accepted: 02/18/2022] [Indexed: 11/25/2022] Open
Abstract
Ions in the Hofmeister series exhibit varied effects on biopolymers. Those classed as kosmotropes generally stabilize secondary structure, and those classed as chaotropes generally destabilize secondary structure. Here, we report that several anionic chaotropes exhibit unique effects on one DNA secondary structure - a G quadruplex. These chaotropes exhibit the expected behaviour (destabilization of secondary structure) in two other structural contexts: a DNA duplex and i-Motifs. Uniquely among secondary structures, we observe that G quadruplexes are comparatively insensitive to the presence of anionic chaotropes, but not other denaturants. Further, the presence of equimolar NaCl provided greater mitigation of the destabilization caused by other non-anionic denaturants. These results are consistent with the presence of monovalent cations providing an especially pronounced stabilizing effect to G quadruplexes when studied in denaturing solution conditions. G-quadruplexes exhibit the lowest sensitivity to denaturation by anionic chaotropes among several DNA secondary structures. In G-quadruplexes, the destabilizing effect of other denaturants is uniquely well-mitigated by the presence of sodium ions. This phenomenon affords a structure-specific means of modulating nucleic acid folding.
Collapse
|
16
|
Gregory KP, Elliott GR, Robertson H, Kumar A, Wanless EJ, Webber GB, Craig VSJ, Andersson GG, Page AJ. Understanding specific ion effects and the Hofmeister series. Phys Chem Chem Phys 2022; 24:12682-12718. [PMID: 35543205 DOI: 10.1039/d2cp00847e] [Citation(s) in RCA: 87] [Impact Index Per Article: 43.5] [Reference Citation Analysis] [Abstract] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Indexed: 01/29/2023]
Abstract
Specific ion effects (SIE), encompassing the Hofmeister Series, have been known for more than 130 years since Hofmeister and Lewith's foundational work. SIEs are ubiquitous and are observed across the medical, biological, chemical and industrial sciences. Nevertheless, no general predictive theory has yet been able to explain ion specificity across these fields; it remains impossible to predict when, how, and to what magnitude, a SIE will be observed. In part, this is due to the complexity of real systems in which ions, counterions, solvents and cosolutes all play varying roles, which give rise to anomalies and reversals in anticipated SIEs. Herein we review the historical explanations for SIE in water and the key ion properties that have been attributed to them. Systems where the Hofmeister series is perturbed or reversed are explored, as is the behaviour of ions at the liquid-vapour interface. We discuss SIEs in mixed electrolytes, nonaqueous solvents, and in highly concentrated electrolyte solutions - exciting frontiers in this field with particular relevance to biological and electrochemical applications. We conclude the perspective by summarising the challenges and opportunities facing this SIE research that highlight potential pathways towards a general predictive theory of SIE.
Collapse
Affiliation(s)
- Kasimir P Gregory
- Discipline of Chemistry, School of Environmental and Life Sciences, The University of Newcastle, Callaghan, New South Wales 2308, Australia. .,Department of Materials Physics, Research School of Physics, Australian National University, Canberra, ACT 0200, Australia
| | - Gareth R Elliott
- Discipline of Chemistry, School of Environmental and Life Sciences, The University of Newcastle, Callaghan, New South Wales 2308, Australia.
| | - Hayden Robertson
- Discipline of Chemistry, School of Environmental and Life Sciences, The University of Newcastle, Callaghan, New South Wales 2308, Australia.
| | - Anand Kumar
- Flinders Institute of Nanoscale Science and Technology, College of Science and Engineering, Flinders University, South Australia 5001, Australia
| | - Erica J Wanless
- Discipline of Chemistry, School of Environmental and Life Sciences, The University of Newcastle, Callaghan, New South Wales 2308, Australia.
| | - Grant B Webber
- School of Engineering, The University of Newcastle, Callaghan, New South Wales 2308, Australia
| | - Vincent S J Craig
- Department of Materials Physics, Research School of Physics, Australian National University, Canberra, ACT 0200, Australia
| | - Gunther G Andersson
- Flinders Institute of Nanoscale Science and Technology, College of Science and Engineering, Flinders University, South Australia 5001, Australia
| | - Alister J Page
- Discipline of Chemistry, School of Environmental and Life Sciences, The University of Newcastle, Callaghan, New South Wales 2308, Australia.
| |
Collapse
|
17
|
Mali H, Shah C, Rudakiya DM, Patel DH, Trivedi U, Subramanian RB. A novel organophosphate hydrolase from Arthrobacter sp. HM01: Characterization and applications. BIORESOURCE TECHNOLOGY 2022; 349:126870. [PMID: 35192947 DOI: 10.1016/j.biortech.2022.126870] [Citation(s) in RCA: 4] [Impact Index Per Article: 2.0] [Reference Citation Analysis] [Abstract] [Key Words] [MESH Headings] [Track Full Text] [Subscribe] [Scholar Register] [Received: 01/07/2022] [Revised: 02/14/2022] [Accepted: 02/16/2022] [Indexed: 06/14/2023]
Abstract
Bioremediation systems coupled to efficient microbial enzymes have emerged as an attractive approach for the in-situ removal of hazardous organophosphates (OPs) pesticides from the polluted environment. However, the role of engineered enzymes in OPs-degradation is rarely studied. In this study, the potential OPs-hydrolase (opdH) gene (Arthrobacter sp. HM01) was isolated, cloned, expressed, and purified. The recombinant organophosphate hydrolase (ropdH) was ∼29 kDa; which catalyzed a broad-range of OPs-pesticides in organic-solvent (∼99 % in 30 min), and was found to increase the catalytic efficiency by 10-folds over the native enzyme (kcat/Km: 107 M-1s-1). The degraded metabolites were analyzed using HPLC/GCMS. Through site-directed mutagenesis, it was confirmed that, conserved metal-bridged residue (Lys-127), plays a crucial role in OPs-degradation, which shows ∼18-folds decline in OPs-degradation. Furthermore, the catalytic activity and its stability has been enhanced by >2.0-fold through biochemical optimization. Thus, the study suggests that ropdH has all the required properties for OPs bioremediation.
Collapse
Affiliation(s)
- Himanshu Mali
- P. G. Department of Biosciences, UGC-Centre of Advanced Studies, Satellite Campus, Sardar Patel University, Sardar Patel Maidan, Bakrol-Vadtal Road, Bakrol, Gujarat 388 315, India
| | - Chandni Shah
- P. G. Department of Biosciences, UGC-Centre of Advanced Studies, Satellite Campus, Sardar Patel University, Sardar Patel Maidan, Bakrol-Vadtal Road, Bakrol, Gujarat 388 315, India
| | - Darshan M Rudakiya
- Synergy Cignpost Diagnostics, 3 Mills Studio, London, E3 3DU, United Kingdom
| | - Darshan H Patel
- Charotar Institute of Paramedical Sciences, Charotar University of Science and Technology, (CHARUSAT), Changa, Gujarat 388421, India
| | - Ujjval Trivedi
- P. G. Department of Biosciences, UGC-Centre of Advanced Studies, Satellite Campus, Sardar Patel University, Sardar Patel Maidan, Bakrol-Vadtal Road, Bakrol, Gujarat 388 315, India
| | - R B Subramanian
- P. G. Department of Biosciences, UGC-Centre of Advanced Studies, Satellite Campus, Sardar Patel University, Sardar Patel Maidan, Bakrol-Vadtal Road, Bakrol, Gujarat 388 315, India.
| |
Collapse
|
18
|
How to improve the efficiency of biocatalysis in non-aqueous pure deep eutectic solvents: A case study on the lipase-catalyzed transesterification reaction. Biochem Eng J 2022. [DOI: 10.1016/j.bej.2022.108336] [Citation(s) in RCA: 3] [Impact Index Per Article: 1.5] [Reference Citation Analysis] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Indexed: 12/23/2022]
|
19
|
Enhanced activity and stability of protein-glutaminase by Hofmeister effects. MOLECULAR CATALYSIS 2022. [DOI: 10.1016/j.mcat.2021.112054] [Citation(s) in RCA: 2] [Impact Index Per Article: 1.0] [Reference Citation Analysis] [Track Full Text] [Subscribe] [Scholar Register] [Indexed: 11/23/2022]
|
20
|
Parsons DF, Carucci C, Salis A. Buffer-specific effects arise from ionic dispersion forces. Phys Chem Chem Phys 2022; 24:6544-6551. [DOI: 10.1039/d2cp00223j] [Citation(s) in RCA: 1] [Impact Index Per Article: 0.5] [Reference Citation Analysis] [Abstract] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Indexed: 11/21/2022]
Abstract
Buffer solutions do not simply regulate pH, but also change the properties of protein molecules. The zeta potential of lysozyme varies significantly at the same buffer concentration, in the order...
Collapse
|
21
|
Edwardes Moore E, Andrei V, Oliveira AR, Coito AM, Pereira IAC, Reisner E. A Semi‐artificial Photoelectrochemical Tandem Leaf with a CO
2
‐to‐Formate Efficiency Approaching 1 %. Angew Chem Int Ed Engl 2021. [DOI: 10.1002/ange.202110867] [Citation(s) in RCA: 0] [Impact Index Per Article: 0] [Reference Citation Analysis] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Indexed: 11/10/2022]
Affiliation(s)
- Esther Edwardes Moore
- Yusuf Hamied Department of Chemistry University of Cambridge Lensfield Road Cambridge CB2 1EW UK
| | - Virgil Andrei
- Yusuf Hamied Department of Chemistry University of Cambridge Lensfield Road Cambridge CB2 1EW UK
| | - Ana Rita Oliveira
- Instituto de Tecnologia Química e Biológica António Xavier Universidade Nova de Lisboa Av. da Republica 2780-157 Oeiras Portugal
| | - Ana Margarida Coito
- Instituto de Tecnologia Química e Biológica António Xavier Universidade Nova de Lisboa Av. da Republica 2780-157 Oeiras Portugal
| | - Inês A. C. Pereira
- Instituto de Tecnologia Química e Biológica António Xavier Universidade Nova de Lisboa Av. da Republica 2780-157 Oeiras Portugal
| | - Erwin Reisner
- Yusuf Hamied Department of Chemistry University of Cambridge Lensfield Road Cambridge CB2 1EW UK
| |
Collapse
|
22
|
Edwardes Moore E, Andrei V, Oliveira AR, Coito AM, Pereira IAC, Reisner E. A Semi-artificial Photoelectrochemical Tandem Leaf with a CO 2 -to-Formate Efficiency Approaching 1 . Angew Chem Int Ed Engl 2021; 60:26303-26307. [PMID: 34472692 DOI: 10.1002/anie.202110867] [Citation(s) in RCA: 11] [Impact Index Per Article: 3.7] [Reference Citation Analysis] [Abstract] [Key Words] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Received: 08/12/2021] [Indexed: 11/06/2022]
Abstract
Semi-artificial photoelectrochemistry can combine state-of-the-art photovoltaic light-absorbers with enzymes evolved for selective fuel-forming reactions such as CO2 reduction, but the overall performance of such hybrid systems has been limited to date. Here, the electrolyte constituents were first tuned to establish an optimal local environment for a W-formate dehydrogenase to perform electrocatalysis. The CO2 reductase was then interfaced with a triple cation lead mixed-halide perovskite through a hierarchically structured porous TiO2 scaffold to produce an integrated photocathode achieving a photocurrent density of -5 mA cm-2 at 0.4 V vs. the reversible hydrogen electrode during simulated solar light irradiation. Finally, the combination with a water-oxidizing BiVO4 photoanode produced a bias-free integrated biophotoelectrochemical tandem device (semi-artificial leaf) with a solar CO2 -to-formate energy conversion efficiency of 0.8 %.
Collapse
Affiliation(s)
- Esther Edwardes Moore
- Yusuf Hamied Department of Chemistry, University of Cambridge, Lensfield Road, Cambridge, CB2 1EW, UK
| | - Virgil Andrei
- Yusuf Hamied Department of Chemistry, University of Cambridge, Lensfield Road, Cambridge, CB2 1EW, UK
| | - Ana Rita Oliveira
- Instituto de Tecnologia Química e Biológica António Xavier, Universidade Nova de Lisboa, Av. da Republica, 2780-157, Oeiras, Portugal
| | - Ana Margarida Coito
- Instituto de Tecnologia Química e Biológica António Xavier, Universidade Nova de Lisboa, Av. da Republica, 2780-157, Oeiras, Portugal
| | - Inês A C Pereira
- Instituto de Tecnologia Química e Biológica António Xavier, Universidade Nova de Lisboa, Av. da Republica, 2780-157, Oeiras, Portugal
| | - Erwin Reisner
- Yusuf Hamied Department of Chemistry, University of Cambridge, Lensfield Road, Cambridge, CB2 1EW, UK
| |
Collapse
|
23
|
Ott F, Rabe KS, Niemeyer CM, Gygli G. Toward Reproducible Enzyme Modeling with Isothermal Titration Calorimetry. ACS Catal 2021. [DOI: 10.1021/acscatal.1c02076] [Citation(s) in RCA: 2] [Impact Index Per Article: 0.7] [Reference Citation Analysis] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Indexed: 12/12/2022]
Affiliation(s)
- Felix Ott
- Institute for Biological Interfaces (IBG 1), Karlsruhe Institute of Technology (KIT), Hermann-von-Helmholtz-Platz 1, 76344 Eggenstein-Leopoldshafen, Germany
| | - Kersten S. Rabe
- Institute for Biological Interfaces (IBG 1), Karlsruhe Institute of Technology (KIT), Hermann-von-Helmholtz-Platz 1, 76344 Eggenstein-Leopoldshafen, Germany
| | - Christof M. Niemeyer
- Institute for Biological Interfaces (IBG 1), Karlsruhe Institute of Technology (KIT), Hermann-von-Helmholtz-Platz 1, 76344 Eggenstein-Leopoldshafen, Germany
| | - Gudrun Gygli
- Institute for Biological Interfaces (IBG 1), Karlsruhe Institute of Technology (KIT), Hermann-von-Helmholtz-Platz 1, 76344 Eggenstein-Leopoldshafen, Germany
| |
Collapse
|
24
|
Lian L, Liu L, Ding Y, Hua Z, Liu G. Specific Anion Effects on Charged-Neutral Random Copolymers: Interplay between Different Anion-Polymer Interactions. LANGMUIR : THE ACS JOURNAL OF SURFACES AND COLLOIDS 2021; 37:1697-1706. [PMID: 33499598 DOI: 10.1021/acs.langmuir.0c02907] [Citation(s) in RCA: 3] [Impact Index Per Article: 1.0] [Reference Citation Analysis] [Abstract] [Track Full Text] [Subscribe] [Scholar Register] [Indexed: 06/12/2023]
Abstract
The study of ion specificities of charged-neutral random copolymers is of great importance for understanding specific ion effects on natural macromolecules. In the present work, we have investigated the specific anion effects on the thermoresponsive behavior of poly([2-(methacryloyloxy)ethyl trimethylammonium chloride]-co-N-isopropylacrylamide) [P(METAC-co-NIPAM)] random copolymers. Our study demonstrates that the anion specificities of the P(METAC-co-NIPAM) copolymers are dependent on their chemical compositions. The specific anion effects on the copolymers with high mole fractions of poly(N-isopropylacrylamide) (PNIPAM) are similar to those on the PNIPAM homopolymer. As the mole fraction of PNIPAM decreases to a certain value, a V-shaped anion series can be observed in terms of the anion-specific cloud point temperature of the copolymer, as induced by the interplay between different anion-polymer interactions. Our study also suggests that both the direct and the indirect anion-polymer interactions contribute to the anion specificities of the copolymers. This work would improve our understanding of the relationship between the ion specificities and the ion-macromolecule interactions for naturally occurring macromolecules.
Collapse
Affiliation(s)
- Leilei Lian
- Hefei National Laboratory for Physical Sciences at the Microscale, Key Laboratory of Surface and Interface Chemistry and Energy Catalysis of Anhui Higher Education Institutes, Department of Chemical Physics, University of Science and Technology of China, Hefei 230026, P. R. China
| | - Lvdan Liu
- Hefei National Laboratory for Physical Sciences at the Microscale, University of Science and Technology of China, Hefei 230026, P. R. China
| | - Yanwei Ding
- Hefei National Laboratory for Physical Sciences at the Microscale, University of Science and Technology of China, Hefei 230026, P. R. China
| | - Zan Hua
- Biomass Molecular Engineering Center, Department of Materials Science and Engineering, Anhui Agricultural University, Hefei 230036, P. R. China
| | - Guangming Liu
- Hefei National Laboratory for Physical Sciences at the Microscale, Key Laboratory of Surface and Interface Chemistry and Energy Catalysis of Anhui Higher Education Institutes, Department of Chemical Physics, University of Science and Technology of China, Hefei 230026, P. R. China
| |
Collapse
|
25
|
Mendes de Oliveira D, Ben-Amotz D. Spectroscopically Quantifying the Influence of Salts on Nonionic Surfactant Chemical Potentials and Micelle Formation. J Phys Chem Lett 2021; 12:355-360. [PMID: 33355467 DOI: 10.1021/acs.jpclett.0c03349] [Citation(s) in RCA: 4] [Impact Index Per Article: 1.3] [Reference Citation Analysis] [Abstract] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Indexed: 06/12/2023]
Abstract
The influence of two salts (NaSCN and Na2SO4) on the micellization of a nonionic surfactant (1,2-hexanediol) is quantified using Raman multivariate curve resolution spectroscopy, combined with a generalized theoretical analysis of the corresponding chemical potential changes. Although the SCN- and SO42- anions are on opposite ends of the Hofmeister series, they are both found to lower the critical micelle concentration. Our combined spectroscopic and theoretical analysis traces these observations to the fact that in both salt solutions the ions have a greater affinity for (or are less strongly expelled from) the hydration shell of the micelle than the free surfactant monomer, as quantified using the corresponding chemical potentials and Wyman-Tanford coefficients. This probe-free experimental and theoretical analysis strategy may readily be extended to micelle formation processes involving other surfactants, salts, and cosolvents, as well as to other sorts of aggregation and binding processes.
Collapse
Affiliation(s)
| | - Dor Ben-Amotz
- Department of Chemistry, Purdue University, West Lafayette, Indiana 47907, United States
| |
Collapse
|
26
|
Mao Y, Fan R, Li R, Ye X, Kulozik U. Flow-through enzymatic reactors using polymer monoliths: From motivation to application. Electrophoresis 2020; 42:2599-2614. [PMID: 33314167 DOI: 10.1002/elps.202000266] [Citation(s) in RCA: 3] [Impact Index Per Article: 0.8] [Reference Citation Analysis] [Abstract] [Key Words] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Received: 09/19/2020] [Revised: 11/01/2020] [Accepted: 12/04/2020] [Indexed: 11/06/2022]
Abstract
The application of monolithic materials as carriers for enzymes has rapidly expanded to the realization of flow-through analysis and bioconversion processes. This expansion is partly attributed to the absence from diffusion limitation in many monoliths-based enzyme reactors. Particularly, the relatively ease of introducing functional groups renders polymer monoliths attractive as enzyme carriers. After summarizing the motivation to develop enzymatic reactors using polymer monoliths, this review reports the most recent applications of such reactors. Besides, the present review focuses on the crucial characteristics of polymer monoliths affecting the immobilization of enzymes and the processing parameters dictating the performance of the resulting enzymatic reactors. This review is intended to provide a guideline for designing and applying flow-through enzymatic reactors using polymer monoliths.
Collapse
Affiliation(s)
- Yuhong Mao
- Fujian Key Laboratory of Marine Enzyme Engineering, College of Biological Science and Technology, Fuzhou University, Fuzhou, Fujian, P. R. China
| | - Rong Fan
- Institute of Bioprocess Engineering and Pharmaceutical Technology, University of Applied Sciences Mittelhessen, Giessen, Germany
| | - Renkuan Li
- Fujian Key Laboratory of Marine Enzyme Engineering, College of Biological Science and Technology, Fuzhou University, Fuzhou, Fujian, P. R. China
| | - Xiuyun Ye
- Fujian Key Laboratory of Marine Enzyme Engineering, College of Biological Science and Technology, Fuzhou University, Fuzhou, Fujian, P. R. China
| | - Ulrich Kulozik
- Chair of Food and Bioprocess Engineering, Technical University of Munich, Freising-Weihenstephan, Germany
| |
Collapse
|
27
|
Carvalho WSP, Lee C, Zhang Y, Czarnecki A, Serpe MJ. Probing the response of poly (N-isopropylacrylamide) microgels to solutions of various salts using etalons. J Colloid Interface Sci 2020; 585:195-204. [PMID: 33279702 DOI: 10.1016/j.jcis.2020.11.045] [Citation(s) in RCA: 8] [Impact Index Per Article: 2.0] [Reference Citation Analysis] [Abstract] [Key Words] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Received: 08/19/2020] [Revised: 10/20/2020] [Accepted: 11/10/2020] [Indexed: 12/20/2022]
Abstract
The Hofmeister series is a qualitative ordering of ions according to their ability to precipitate proteins in aqueous solution and is extremely important to consider when trying to understand materials and biomolecular structure and function. Herein, we utilized optical devices (etalons) composed of poly(N-isopropylacrylamide) (pNIPAm)-co-10% acrylic acid (AAc) or pNIPAm-based microgels to investigate how various salts in the Hofmeister series influenced the microgel hydration state. Etalons were exposed to a series of salts solutions at different concentrations and the position of the peaks in the reflectance spectra monitored using reflectance spectroscopy. As expected, pNIPAm-co-10%AAc microgel-based etalons responded to the presence of ions, although in this case the response to cations deviated from the Hofmeister series. However, when using etalons prepared with pNIPAm-based microgels, the responses followed the Hofmeister series for both cation and anions. Finally, we observed that the sensitivity of etalons prepared with pNIPAm microgels was significantly higher than the response obtained from etalons composed of pNIPAm-co-10%AAc microgels. This was explained by considering the charge on the pNIPAm-co-10%AAc microgels that influences how osmotic and Hofmeister effects impacts hydration state.
Collapse
Affiliation(s)
| | - Cayo Lee
- Department of Chemistry, University of Alberta, Edmonton, AB T6G 2G2, Canada
| | - Yingnan Zhang
- Department of Chemistry, University of Alberta, Edmonton, AB T6G 2G2, Canada
| | - Adam Czarnecki
- Department of Chemistry, University of Alberta, Edmonton, AB T6G 2G2, Canada
| | - Michael J Serpe
- Department of Chemistry, University of Alberta, Edmonton, AB T6G 2G2, Canada.
| |
Collapse
|
28
|
Verma SK, Ghosh KK, Verma R, Verma S. Influence of cationic surfactants and inorganic salts on the enzyme kinetic activity of
Mucor javanicus
lipase. INT J CHEM KINET 2020. [DOI: 10.1002/kin.21444] [Citation(s) in RCA: 1] [Impact Index Per Article: 0.3] [Reference Citation Analysis] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Indexed: 11/09/2022]
Affiliation(s)
- Santosh K. Verma
- School of Chemistry and Chemical Engineering Yulin University Yulin Shaanxi People's Republic of China
- Shaanxi Key Laboratory of Low Metamorphic Coal Clean Utilization Yulin University Yulin Shaanxi People's Republic of China
- School of Studies in Chemistry Pt. Ravishankar Shukla University Raipur Chhattisgarh India
| | - Kallol K. Ghosh
- School of Studies in Chemistry Pt. Ravishankar Shukla University Raipur Chhattisgarh India
| | - Rameshwari Verma
- School of Chemistry and Chemical Engineering Yulin University Yulin Shaanxi People's Republic of China
- Shaanxi Key Laboratory of Low Metamorphic Coal Clean Utilization Yulin University Yulin Shaanxi People's Republic of China
- School of Studies in Chemistry Pt. Ravishankar Shukla University Raipur Chhattisgarh India
| | - Shekhar Verma
- University College of Pharmacy Raipur Pt. Deendayal Upadhyay Memorial Health Sciences and Aayush University of Chhattisgarh Raipur India
| |
Collapse
|
29
|
Salis A, Cappai L, Carucci C, Parsons DF, Monduzzi M. Specific Buffer Effects on the Intermolecular Interactions among Protein Molecules at Physiological pH. J Phys Chem Lett 2020; 11:6805-6811. [PMID: 32787211 DOI: 10.1021/acs.jpclett.0c01900] [Citation(s) in RCA: 22] [Impact Index Per Article: 5.5] [Reference Citation Analysis] [Abstract] [MESH Headings] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Indexed: 06/11/2023]
Abstract
BSA and lysozyme molecular motion at pH 7.15 is buffer-specific. Adsorption of buffer ions on protein surfaces modulates the protein surface charge and thus protein-protein interactions. Interactions were estimated by means of the interaction parameter kD obtained from plots of diffusion coefficients at different protein concentrations (Dapp = D0[1 + kDCprotein]) via dynamic light scattering and nuclear magnetic resonance. The obtained results agree with recent findings confirming doubts regarding the validity of the Henderson-Hasselbalch equation, which has traditionally provided a basis for understanding pH buffers of primary importance in solution chemistry, electrochemistry, and biochemistry.
Collapse
Affiliation(s)
- Andrea Salis
- Department of Chemical and Geological Sciences, University of Cagliari, and Centro NanoBiotecnologie Sardegna (CNBS), Cittadella Universitaria, SS 554 bivio Sestu, 09042 Monserrato (CA), Italy
- Consorzio Interuniversitario per lo Sviluppo dei Sistemi a Grande Interfase (CSGI), Florence, Italy
- Unità Operativa University of Cagliari, Cagliari, Italy
| | - Luca Cappai
- Department of Chemical and Geological Sciences, University of Cagliari, and Centro NanoBiotecnologie Sardegna (CNBS), Cittadella Universitaria, SS 554 bivio Sestu, 09042 Monserrato (CA), Italy
| | - Cristina Carucci
- Department of Chemical and Geological Sciences, University of Cagliari, and Centro NanoBiotecnologie Sardegna (CNBS), Cittadella Universitaria, SS 554 bivio Sestu, 09042 Monserrato (CA), Italy
- Consorzio Interuniversitario per lo Sviluppo dei Sistemi a Grande Interfase (CSGI), Florence, Italy
- Unità Operativa University of Cagliari, Cagliari, Italy
| | - Drew F Parsons
- Discipline of Chemistry and Physics, College of Science, Health, Engineering & Education, Murdoch University, 90 South Street, Murdoch, WA 6150, Australia
| | - Maura Monduzzi
- Department of Chemical and Geological Sciences, University of Cagliari, and Centro NanoBiotecnologie Sardegna (CNBS), Cittadella Universitaria, SS 554 bivio Sestu, 09042 Monserrato (CA), Italy
- Consorzio Interuniversitario per lo Sviluppo dei Sistemi a Grande Interfase (CSGI), Florence, Italy
- Unità Operativa University of Cagliari, Cagliari, Italy
| |
Collapse
|
30
|
Batista JM, Brandão-Costa RM, Carneiro da Cunha MN, Rodrigues HO, Porto AL. Purification and biochemical characterization of an extracellular fructosyltransferase-rich extract produced by Aspergillus tamarii Kita UCP1279. BIOCATALYSIS AND AGRICULTURAL BIOTECHNOLOGY 2020. [DOI: 10.1016/j.bcab.2020.101647] [Citation(s) in RCA: 7] [Impact Index Per Article: 1.8] [Reference Citation Analysis] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Indexed: 02/02/2023]
|
31
|
Yuan H, Liu G. Ionic effects on synthetic polymers: from solutions to brushes and gels. SOFT MATTER 2020; 16:4087-4104. [PMID: 32292998 DOI: 10.1039/d0sm00199f] [Citation(s) in RCA: 15] [Impact Index Per Article: 3.8] [Reference Citation Analysis] [Abstract] [Track Full Text] [Subscribe] [Scholar Register] [Indexed: 06/11/2023]
Abstract
The ionic effects on synthetic polymers have attracted extensive attention due to the crucial role of ions in the determination of the properties of synthetic polymers. This review places the focus on specific ion effects, multivalent ion effects, and ionic hydrophilicity/hydrophobicity effects in synthetic polymer systems from solutions to brushes and gels. The specific ion effects on neutral polymers are determined by both the direct and indirect specific ion-polymer interactions, whereas the ion specificities of charged polymers are mainly dominated by the specific ion-pairing interactions. The ionic cross-linking effect exerted by the multivalent ions is widely used to tune the properties of polyelectrolytes, while the reentrant behavior of polyelectrolytes in the presence of multivalent ions still remains poorly understood. The ionic hydrophilicity/hydrophobicity effects not only can be applied to make strong polyelectrolytes thermosensitive, but also can be used to prepare polymeric nano-objects and to control the wettability of polyelectrolyte brush-modified surfaces. The not well-studied ionic hydrogen bond effects are also discussed in the last section of this review.
Collapse
Affiliation(s)
- Haiyang Yuan
- Hefei National Laboratory for Physical Sciences at the Microscale, Key Laboratory of Surface and Interface Chemistry and Energy Catalysis of Anhui Higher Education Institutes, Department of Chemical Physics, University of Science and Technology of China, No. 96, Jinzhai Road, Hefei 230026, P. R. China.
| | | |
Collapse
|
32
|
Miller RC, Aplin CP, Kay TM, Leighton R, Libal C, Simonet R, Cembran A, Heikal AA, Boersma AJ, Sheets ED. FRET Analysis of Ionic Strength Sensors in the Hofmeister Series of Salt Solutions Using Fluorescence Lifetime Measurements. J Phys Chem B 2020; 124:3447-3458. [PMID: 32267692 DOI: 10.1021/acs.jpcb.9b10498] [Citation(s) in RCA: 8] [Impact Index Per Article: 2.0] [Reference Citation Analysis] [Abstract] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Indexed: 11/29/2022]
Abstract
Living cells are complex, crowded, and dynamic and continually respond to environmental and intracellular stimuli. They also have heterogeneous ionic strength with compartmentalized variations in both intracellular concentrations and types of ions. These challenges would benefit from the development of quantitative, noninvasive approaches for mapping the heterogeneous ionic strength fluctuations in living cells. Here, we investigated a class of recently developed ionic strength sensors that consists of mCerulean3 (a cyan fluorescent protein) and mCitrine (a yellow fluorescent protein) tethered via a linker made of two charged α-helices and a flexible loop. The two helices are designed to bear opposite charges, which is hypothesized to increase the ionic screening and therefore a larger intermolecular distance. In these protein constructs, mCerulean3 and mCitrine act as a donor-acceptor pair undergoing Förster resonance energy transfer (FRET) that is dependent on both the linker amino acids and the environmental ionic strength. Using time-resolved fluorescence of the donor (mCerulean3), we determined the sensitivity of the energy transfer efficiencies and the donor-acceptor distances of these sensors at variable concentrations of the Hofmeister series of salts (KCl, LiCl, NaCl, NaBr, NaI, Na2SO4). As controls, similar measurements were carried out on the FRET-incapable, enzymatically cleaved counterparts of these sensors as well as a construct designed with two electrostatically neutral α-helices (E6G2). Our results show that the energy transfer efficiencies of these sensors are sensitive to both the linker amino acid sequence and the environmental ionic strength, whereas the sensitivity of these sensors to the identity of the dissolved ions of the Hofmeister series of salts seems limited. We also developed a theoretical framework to explain the observed trends as a function of the ionic strength in terms of the Debye screening of the electrostatic interaction between the two charged α-helices in the linker region. These controlled solution studies represent an important step toward the development of rationally designed FRET-based environmental sensors while offering different models for calculating the energy transfer efficiency using time-resolved fluorescence that is compatible with future in vivo studies.
Collapse
Affiliation(s)
| | | | | | | | | | | | | | | | - Arnold J Boersma
- DWI-Leibniz Institute for Interactive Materials, Forckenbeckstraße 50, 52056 Aachen, Germany
| | | |
Collapse
|
33
|
Chen Y, Li Y, Chao H, Wu J, Zhu W, Fang T, Gao X, Yan D. Molecular cloning and characterisation of a novel xanthine oxidase from Cellulosimicrobium cellulans ATCC21606. Process Biochem 2020. [DOI: 10.1016/j.procbio.2019.11.033] [Citation(s) in RCA: 1] [Impact Index Per Article: 0.3] [Reference Citation Analysis] [Track Full Text] [Journal Information] [Submit a Manuscript] [Subscribe] [Scholar Register] [Indexed: 11/15/2022]
|
34
|
Carucci C, Raccis F, Salis A, Magner E. Specific ion effects on the enzymatic activity of alcohol dehydrogenase fromSaccharomyces cerevisiae. Phys Chem Chem Phys 2020; 22:6749-6754. [DOI: 10.1039/c9cp06800g] [Citation(s) in RCA: 10] [Impact Index Per Article: 2.5] [Reference Citation Analysis] [Abstract] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Indexed: 11/21/2022]
Abstract
The specific activity andVmax, but notKm, of alcohol dehydrogenase fromSaccharomyces cerevisiaeare ion specific.
Collapse
Affiliation(s)
- Cristina Carucci
- Department of Chemical Sciences
- Synthesis and Solid State Pharmaceutical Centre (SSPC) and Bernal Institute
- University of Limerick
- Limerick
- Ireland
| | - Francesco Raccis
- Department of Chemical Sciences
- Synthesis and Solid State Pharmaceutical Centre (SSPC) and Bernal Institute
- University of Limerick
- Limerick
- Ireland
| | - Andrea Salis
- Department of Chemical and Geological Sciences
- University of Cagliari
- CSGI & CNBS
- Cittadella Universitaria
- 09042 Monserrato (CA)
| | - Edmond Magner
- Department of Chemical Sciences
- Synthesis and Solid State Pharmaceutical Centre (SSPC) and Bernal Institute
- University of Limerick
- Limerick
- Ireland
| |
Collapse
|
35
|
Exploiting the potential of metal and solvent tolerant laccase from Tricholoma giganteum AGDR1 for the removal of pesticides. Int J Biol Macromol 2019; 144:586-595. [PMID: 31830449 DOI: 10.1016/j.ijbiomac.2019.12.068] [Citation(s) in RCA: 14] [Impact Index Per Article: 2.8] [Reference Citation Analysis] [Abstract] [Key Words] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Received: 05/31/2019] [Revised: 08/21/2019] [Accepted: 12/09/2019] [Indexed: 11/22/2022]
Abstract
Laccase from previously reported hardwood degrading fungus, Tricholoma giganteum AGDR1, was isolated, identified at molecular level, biochemically characterized and also utilized for pesticide degradation. Laccase gene is comprised of 3752 bp, which encompassed 742-bp of 5' flanking upstream sequence with 12 introns and 12 exons. Mature enzyme possesses 391 amino acids and signal peptide, which is determined to be monomeric protein with an apparent molecular weight of 41 kDa and 6.45 pI. Higher optimal activities were observed at 45 °C and pH 3.0 and surprisingly, it exhibited more than 20% of relative activity at pH 1.5. Purified laccase was tolerant to 100 mM of metals (i.e. Se, Pb, Cu, Cr and Cd), organic solvents (ethyl acetate, methanol, ethanol and acetone) and potent inhibitors (hydroxylamine, thiourea, NaF and Na-azide) as compared to reported laccases. It was able to degrade 29%, 7% and 72% of chlorpyrifos, profenofos and thiophanate methyl within 15 h, respectively. Molecular docking analysis revealed that higher binding efficacy of these pesticides is observed with H83, H320, A95, V384, and P366 which are presented near to the catalytic site. Based on the results, T. giganteum AGDR1 laccase can be applied for the potential remediation and industrial applications under harsh conditions.
Collapse
|
36
|
Zhu J, Pan J, Ma C, Zhang G, Liu G. Specific Ion Effects on the Enzymatic Degradation of Polymeric Marine Antibiofouling Materials. LANGMUIR : THE ACS JOURNAL OF SURFACES AND COLLOIDS 2019; 35:11157-11166. [PMID: 31347852 DOI: 10.1021/acs.langmuir.9b01740] [Citation(s) in RCA: 4] [Impact Index Per Article: 0.8] [Reference Citation Analysis] [Abstract] [Track Full Text] [Subscribe] [Scholar Register] [Indexed: 06/10/2023]
Abstract
It is expected that the widely dispersed ions in seawater would have strong influence on the performance of polymeric marine antibiofouling materials through the modulation of enzymatic degradation of the materials. In this work, poly(ε-caprolactone)-based polyurethane and poly(triisopropylsilyl methacrylate-co-2-methylene-1,3-dioxepane) have been employed as model systems to explore the specific ion effects on the enzymatic degradation of polymeric marine antibiofouling materials. Our study demonstrates that the specific ion effects on the enzymatic degradation of the polymer films are closely correlated with the ion-specific enzymatic hydrolysis of the ester. In the presence of different cations, the effectiveness of the enzyme to degrade the polymer films is dominated by the direct specific interactions between the cations and the negatively charged enzyme molecules. In the presence of different anions, the kosmotropic anions give rise to a high enzyme activity in the degradation of polymer films induced by the salting-out effect, whereas the chaotropic anions lead to a low enzyme activity in the degradation of the polymer films owing to the salting-in effect. This work highlights the opportunities available for the use of specific ion effects to modulate the enzymatic degradation of polymeric antibiofouling materials in the marine environment.
Collapse
Affiliation(s)
- Jie Zhu
- Hefei National Laboratory for Physical Sciences at the Microscale, Key Laboratory of Surface and Interface Chemistry and Energy Catalysis of Anhui Higher Education Institutes, Department of Chemical Physics , University of Science and Technology of China , Hefei 230026 , P. R. China
| | - Jiansen Pan
- Faculty of Materials Science and Engineering , South China University of Technology , 510640 Guangzhou , P. R. China
| | - Chunfeng Ma
- Faculty of Materials Science and Engineering , South China University of Technology , 510640 Guangzhou , P. R. China
| | - Guangzhao Zhang
- Faculty of Materials Science and Engineering , South China University of Technology , 510640 Guangzhou , P. R. China
| | - Guangming Liu
- Hefei National Laboratory for Physical Sciences at the Microscale, Key Laboratory of Surface and Interface Chemistry and Energy Catalysis of Anhui Higher Education Institutes, Department of Chemical Physics , University of Science and Technology of China , Hefei 230026 , P. R. China
| |
Collapse
|
37
|
The Hofmeister series: Specific ion effects in aqueous polymer solutions. J Colloid Interface Sci 2019; 555:615-635. [PMID: 31408761 DOI: 10.1016/j.jcis.2019.07.067] [Citation(s) in RCA: 78] [Impact Index Per Article: 15.6] [Reference Citation Analysis] [Abstract] [Key Words] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Received: 03/13/2019] [Revised: 07/23/2019] [Accepted: 07/24/2019] [Indexed: 12/21/2022]
Abstract
Specific ion effects in aqueous polymer solutions have been under active investigation over the past few decades. The current state-of-the-art research is primarily focused on the understanding of the mechanisms through which ions interact with macromolecules and affect their solution stability. Hence, we herein first present the current opinion on the sources of ion-specific effects and review the relevant studies. This includes a summary of the molecular mechanisms through which ions can interact with polymers, quantification of the affinity of ions for the polymer surface, a thermodynamic description of the effects of salts on polymer stability, as well as a discussion on the different forces that contribute to ion-polymer interplay. Finally, we also highlight future research issues that call for further scrutiny. These include fundamental questions on the mechanisms of ion-specific effects and their correlation with polymer properties as well as a discussion on the specific ion effects in more complex systems such as mixed electrolyte solutions.
Collapse
|
38
|
|
39
|
Statistical optimization of lipase production from Sphingobacterium sp. strain S2 and evaluation of enzymatic depolymerization of Poly(lactic acid) at mesophilic temperature. Polym Degrad Stab 2019. [DOI: 10.1016/j.polymdegradstab.2018.11.030] [Citation(s) in RCA: 8] [Impact Index Per Article: 1.6] [Reference Citation Analysis] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Indexed: 11/21/2022]
|
40
|
Dušeková E, Garajová K, Yavaşer R, Varhač R, Sedlák E. Hofmeister effect on catalytic properties of chymotrypsin is substrate-dependent. Biophys Chem 2018; 243:8-16. [DOI: 10.1016/j.bpc.2018.10.002] [Citation(s) in RCA: 12] [Impact Index Per Article: 2.0] [Reference Citation Analysis] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Received: 08/16/2018] [Revised: 09/30/2018] [Accepted: 10/09/2018] [Indexed: 12/26/2022]
|
41
|
Ferreira EA, Rodezno SVA, Omori ÁT, Cunha RLOR. A study on the enzyme catalysed enantioselective hydrolysis of methyl 2-methyl-4-oxopentanoate, a precursor of chiral γ-butyrolactones. BIOCATAL BIOTRANSFOR 2018. [DOI: 10.1080/10242422.2018.1502274] [Citation(s) in RCA: 2] [Impact Index Per Article: 0.3] [Reference Citation Analysis] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Indexed: 10/27/2022]
Affiliation(s)
- Edgard A. Ferreira
- Centro de Ciências Naturais e Humanas, Universidade Federal do ABC, Santo André, Brasil
- Escola de Engenharia, Universidade Presbiteriana Mackenzie, São Paulo, Brasil
| | - Sindy V. A. Rodezno
- Centro de Ciências Naturais e Humanas, Universidade Federal do ABC, Santo André, Brasil
| | - Álvaro T. Omori
- Centro de Ciências Naturais e Humanas, Universidade Federal do ABC, Santo André, Brasil
| | | |
Collapse
|
42
|
Mao Y, Kulozik U. Selective hydrolysis of whey proteins using a flow-through monolithic reactor with large pore size and immobilised trypsin. Int Dairy J 2018. [DOI: 10.1016/j.idairyj.2018.05.015] [Citation(s) in RCA: 4] [Impact Index Per Article: 0.7] [Reference Citation Analysis] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Indexed: 10/14/2022]
|
43
|
Efficient resolution of (R,S)-1-(1-naphthyl)ethylamine by Candida antarctica lipase B in ionic liquids. MOLECULAR CATALYSIS 2018. [DOI: 10.1016/j.mcat.2018.01.026] [Citation(s) in RCA: 10] [Impact Index Per Article: 1.7] [Reference Citation Analysis] [Track Full Text] [Subscribe] [Scholar Register] [Indexed: 11/17/2022]
|
44
|
Senske M, Constantinescu-Aruxandei D, Havenith M, Herrmann C, Weingärtner H, Ebbinghaus S. The temperature dependence of the Hofmeister series: thermodynamic fingerprints of cosolute-protein interactions. Phys Chem Chem Phys 2018; 18:29698-29708. [PMID: 27806138 DOI: 10.1039/c6cp05080h] [Citation(s) in RCA: 47] [Impact Index Per Article: 7.8] [Reference Citation Analysis] [Abstract] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Indexed: 12/21/2022]
Abstract
The Hofmeister series is a universal homologous series to rank ion-specific effects on biomolecular properties such as protein stability or aggregation propensity. Although this ranking is widely used, outliers and exceptions are discussed controversially and a molecular level understanding is still lacking. Studying the thermal unfolding equilibrium of RNase A, we here show that this ambiguity arises from the oversimplified approach to determine the ion rankings. Instead of measuring salt effects on a single point of the protein folding stability curve (e.g. the melting point Tm), we here consider the salt induced shifts of the entire protein 'stability curve' (the temperature dependence of the unfolding free energy change, ΔGu(T)). We found multiple intersections of these curves, pinpointing a widely ignored fact: the Hofmeister cation and anion rankings are temperature dependent. We further developed a novel classification scheme of cosolute effects based on their thermodynamic fingerprints, reaching beyond salt effects to non-electrolytes.
Collapse
Affiliation(s)
- Michael Senske
- Department of Physical Chemistry II, Ruhr-Universität Bochum, 44780 Bochum, Germany.
| | | | - Martina Havenith
- Department of Physical Chemistry II, Ruhr-Universität Bochum, 44780 Bochum, Germany.
| | - Christian Herrmann
- Department of Physical Chemistry I, Ruhr-Universität Bochum, 44780 Bochum, Germany.
| | - Hermann Weingärtner
- Department of Physical Chemistry II, Ruhr-Universität Bochum, 44780 Bochum, Germany.
| | - Simon Ebbinghaus
- Department of Physical Chemistry II, Ruhr-Universität Bochum, 44780 Bochum, Germany.
| |
Collapse
|
45
|
De Hoe GX, Zumstein MT, Tiegs BJ, Brutman JP, McNeill K, Sander M, Coates GW, Hillmyer MA. Sustainable Polyester Elastomers from Lactones: Synthesis, Properties, and Enzymatic Hydrolyzability. J Am Chem Soc 2018; 140:963-973. [DOI: 10.1021/jacs.7b10173] [Citation(s) in RCA: 73] [Impact Index Per Article: 12.2] [Reference Citation Analysis] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Indexed: 12/16/2022]
Affiliation(s)
- Guilhem X. De Hoe
- Department
of Chemistry, University of Minnesota, Minneapolis, Minnesota 55455-0431, United States
| | - Michael T. Zumstein
- Department
of Environmental Systems Science, Institute of Biogeochemistry and
Pollutant Dynamics, Swiss Federal Institute of Technology (ETH) Zurich, 8092 Zürich, Switzerland
| | - Brandon J. Tiegs
- Department
of Chemistry and Chemical Biology, Baker Laboratory, Cornell University, Ithaca, New York 14853-1301, United States
| | - Jacob P. Brutman
- Department
of Chemistry, University of Minnesota, Minneapolis, Minnesota 55455-0431, United States
| | - Kristopher McNeill
- Department
of Environmental Systems Science, Institute of Biogeochemistry and
Pollutant Dynamics, Swiss Federal Institute of Technology (ETH) Zurich, 8092 Zürich, Switzerland
| | - Michael Sander
- Department
of Environmental Systems Science, Institute of Biogeochemistry and
Pollutant Dynamics, Swiss Federal Institute of Technology (ETH) Zurich, 8092 Zürich, Switzerland
| | - Geoffrey W. Coates
- Department
of Chemistry and Chemical Biology, Baker Laboratory, Cornell University, Ithaca, New York 14853-1301, United States
| | - Marc A. Hillmyer
- Department
of Chemistry, University of Minnesota, Minneapolis, Minnesota 55455-0431, United States
| |
Collapse
|
46
|
Chen G, Wang L, Miao M, Jia C, Feng B. Coupled effects of salt and pressure on catalytic ability of Rhizopus chinensis lipase. JOURNAL OF THE SCIENCE OF FOOD AND AGRICULTURE 2017; 97:5381-5387. [PMID: 28500670 DOI: 10.1002/jsfa.8427] [Citation(s) in RCA: 2] [Impact Index Per Article: 0.3] [Reference Citation Analysis] [Abstract] [Key Words] [MESH Headings] [Track Full Text] [Subscribe] [Scholar Register] [Received: 02/26/2017] [Revised: 05/01/2017] [Accepted: 05/09/2017] [Indexed: 06/07/2023]
Abstract
BACKGROUND Both high pressure and environmental factors could influence the catalytic abilities of enzymes. This work investigated coupled effects of pressure and salts on Rhizopus chinensis lipase (RCL) to provide significant information for its further applications. RESULTS The maximum activity of RCL was observed under 200 MPa at 40 °C. The highest activity was achieved at concentrations of 0.06-0.1 mol L-1 for tested salts. The effect of monovalent cations on RCL activity followed the Hofmeister series (K+ > Na+ > Li+ ) at 0.1 MPa but the order of Na+ and K+ was changed under 200 MPa. Meanwhile, the effects of anions did not follow the Hofmeister series. KCl slightly improved the thermostability of RCL at moderate concentration. At 60 °C, LiCl only stabilised RCL at 0.1 mol L-1 . The pre-transition unfolding point was shifted from 4.5 to 3.5 mol L-1 with pressure increasing from 0.1 to 600 MPa. In addition, KCl could not change the lipase's extrinsic fluorescence evolution versus pressure. CONCLUSION Pressure and salts could improve catalytic ability and stability of RCL under appropriate conditions. The effect of high pressure on RCL was influenced by salts. Meanwhile salts cannot prevent high pressure-induced damage to RCL. © 2017 Society of Chemical Industry.
Collapse
Affiliation(s)
- Gang Chen
- School of Food Science and Technology, Jiangnan University, Wuxi, Jiangsu, P.R. China
| | - Lu Wang
- School of Food Science and Technology, Jiangnan University, Wuxi, Jiangsu, P.R. China
| | - Ming Miao
- State Key Laboratory of Food Science and Technology, Jiangnan University, Wuxi, Jiangsu, P.R. China
| | - Chengsheng Jia
- School of Food Science and Technology, Jiangnan University, Wuxi, Jiangsu, P.R. China
| | - Biao Feng
- School of Food Science and Technology, Jiangnan University, Wuxi, Jiangsu, P.R. China
- State Key Laboratory of Food Science and Technology, Jiangnan University, Wuxi, Jiangsu, P.R. China
| |
Collapse
|
47
|
Carucci C, Salis A, Magner E. Specific Ion Effects on the Mediated Oxidation of NADH. ChemElectroChem 2017. [DOI: 10.1002/celc.201700672] [Citation(s) in RCA: 5] [Impact Index Per Article: 0.7] [Reference Citation Analysis] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Indexed: 12/11/2022]
Affiliation(s)
- Cristina Carucci
- Department of Chemical Sciences, Synthesis and Solid State Pharmaceutical Centre, Bernal Institute; University of Limerick; Limerick Ireland
| | - Andrea Salis
- Department of Chemical and Geological Sciences; University of Cagliari; Cittadella Universitaria, SS 554 bivio Sestu 09042 Monserrato (CA) Italy
| | - Edmond Magner
- Department of Chemical Sciences, Synthesis and Solid State Pharmaceutical Centre, Bernal Institute; University of Limerick; Limerick Ireland
| |
Collapse
|
48
|
Andreev M, Chremos A, de Pablo J, Douglas JF. Coarse-Grained Model of the Dynamics of Electrolyte Solutions. J Phys Chem B 2017; 121:8195-8202. [DOI: 10.1021/acs.jpcb.7b04297] [Citation(s) in RCA: 44] [Impact Index Per Article: 6.3] [Reference Citation Analysis] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Indexed: 11/29/2022]
Affiliation(s)
- Marat Andreev
- Institute
of Molecular Engineering, University of Chicago, Chicago, Illinois 60637, United States
- Center for Hierarchical Materials Design, Evanston, Illinois 60208, United States
| | - Alexandros Chremos
- National Institute of Standards and Technology, Gaithersburg, Maryland 20899, United States
| | - Juan de Pablo
- Institute
of Molecular Engineering, University of Chicago, Chicago, Illinois 60637, United States
| | - Jack F. Douglas
- National Institute of Standards and Technology, Gaithersburg, Maryland 20899, United States
| |
Collapse
|
49
|
Dynamical Approach to Multi-Equilibria Problems Considering the Debye–Hückel Theory of Electrolyte Solutions: Concentration Quotients as a Function of Ionic Strength. J SOLUTION CHEM 2017. [DOI: 10.1007/s10953-017-0593-z] [Citation(s) in RCA: 5] [Impact Index Per Article: 0.7] [Reference Citation Analysis] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Indexed: 10/19/2022]
|
50
|
Garajová K, Balogová A, Dušeková E, Sedláková D, Sedlák E, Varhač R. Correlation of lysozyme activity and stability in the presence of Hofmeister series anions. BIOCHIMICA ET BIOPHYSICA ACTA-PROTEINS AND PROTEOMICS 2017; 1865:281-288. [DOI: 10.1016/j.bbapap.2016.11.016] [Citation(s) in RCA: 27] [Impact Index Per Article: 3.9] [Reference Citation Analysis] [Track Full Text] [Subscribe] [Scholar Register] [Received: 09/22/2016] [Revised: 11/01/2016] [Accepted: 11/28/2016] [Indexed: 01/01/2023]
|