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Engstler J, Giovambattista N. Comparative Study of the Effects of Temperature and Pressure on the Water-Mediated Interactions between Apolar Nanoscale Solutes. J Phys Chem B 2019; 123:1116-1128. [PMID: 30592598 DOI: 10.1021/acs.jpcb.8b10296] [Citation(s) in RCA: 4] [Impact Index Per Article: 0.8] [Reference Citation Analysis] [Abstract] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Indexed: 11/30/2022]
Abstract
We perform molecular dynamics simulations to study the effects of temperature and pressure on the water-mediated interaction (WMI) between two nanoscale (apolar) graphene plates at 240 ≤ T ≤ 400 K and -100 ≤ P ≤ 1200 MPa. These are thermodynamic conditions relevant to, for example, cooling-, heating-, compression-, and decompression-induced protein denaturation. We find that at all ( T, P) studied, the potential of mean force between the graphene plates, as a function of plate separation r, exhibits local minima at specific plate separations r = r n that can accommodate n water layers ( n = 0,1,2,3). In particular, our results show that isobaric cooling and isothermal compression have a similar effect on WMI between the plates; both processes tend to suppress the attraction and ultimate collapse of the graphene plates by kinetically trapping the plates at the metastable states with r = r n ( n > 0). In addition, isobaric heating and isothermal decompression also have a similar effect; both processes tend to reduce the range and strength of the interactions between the graphene plates. Interestingly, at low temperatures, the WMI between the plates is affected by crystallization. However, crystallization depends deeply on the water model considered, SPC/E and TIP4P/2005 water models, with the crystallization occurring at different ( T, P) conditions, into different forms of ice.
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Affiliation(s)
- Justin Engstler
- Department of Physics , Brooklyn College of the City University of New York , Brooklyn , New York 11210 , United States
| | - Nicolas Giovambattista
- Department of Physics , Brooklyn College of the City University of New York , Brooklyn , New York 11210 , United States.,Ph.D. Programs in Chemistry and Physics , The Graduate Center of the City University of New York , New York , New York 10016 , United States
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Jabes BS, Bratko D, Luzar A. Extent of Surface Force Additivity on Chemically Heterogeneous Substrates at Varied Orientations. J Phys Chem B 2018; 122:3596-3603. [PMID: 29185778 DOI: 10.1021/acs.jpcb.7b10790] [Citation(s) in RCA: 0] [Impact Index Per Article: 0] [Reference Citation Analysis] [Abstract] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Indexed: 11/30/2022]
Abstract
Surface interactions between chemically mixed surfaces, as well as those among dissolved biomolecules, comprise distinct contributions from polar and hydrophobic moieties. These contributions are often context dependent. Approximate compliance to the Cassie additivity equation for the wetting free energies on mixed surfaces in water is, however, indicative of similarly additive forces between individual surface elements, suggesting a quadratic interpolation model for total force from the forces between pure surfaces. We use molecular dynamics/umbrella sampling simulations of parallel and nonparallel mixed surfaces with demonstrable Cassie-like behavior to verify how well the total surface force between the heterogeneous, molecularly rough surfaces can be approximated as a combination of forces among the homogeneous ones. When accounting for dissimilar distances of approach between functional groups of different types, our results for graphene surfaces with mixed methyl and nitrile coating show such a superposition to provide a reasonable first order approximation of interactions between the platelets. Deviations from additivity are more prominent in parallel-plate configurations, at high content of hydrophobic groups, and small separations. The inclusion of water polarizability does not visibly alter the observed behavior regardless of platelet orientations. The outcome of this study determines the necessary molecular conditions for observing force additivity that emphasize the context dependence of hydrophobic interaction in the presence of polar groups. This notion provides guidelines for the syntheses of new, chemically heterogeneous materials with tailored function-oriented properties in aqueous media.
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Affiliation(s)
- B Shadrack Jabes
- Department of Chemistry , Virginia Commonwealth University , Richmond , Virginia 23284 , United States
| | - Dusan Bratko
- Department of Chemistry , Virginia Commonwealth University , Richmond , Virginia 23284 , United States
| | - Alenka Luzar
- Department of Chemistry , Virginia Commonwealth University , Richmond , Virginia 23284 , United States
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Ou SC, Cui D, Wezowicz M, Taufer M, Patel S. Free energetics of carbon nanotube association in aqueous inorganic NaI salt solutions: Temperature effects using all-atom molecular dynamics simulations. J Comput Chem 2015; 36:1196-212. [PMID: 25868455 PMCID: PMC4445429 DOI: 10.1002/jcc.23906] [Citation(s) in RCA: 2] [Impact Index Per Article: 0.2] [Reference Citation Analysis] [Abstract] [Key Words] [MESH Headings] [Grants] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Received: 10/16/2014] [Revised: 01/22/2015] [Accepted: 02/21/2015] [Indexed: 11/06/2022]
Abstract
In this study, we examine the temperature dependence of free energetics of nanotube association using graphical processing unit-enabled all-atom molecular dynamics simulations (FEN ZI) with two (10,10) single-walled carbon nanotubes in 3 m NaI aqueous salt solution. Results suggest that the free energy, enthalpy and entropy changes for the association process are all reduced at the high temperature, in agreement with previous investigations using other hydrophobes. Via the decomposition of free energy into individual components, we found that solvent contribution (including water, anion, and cation contributions) is correlated with the spatial distribution of the corresponding species and is influenced distinctly by the temperature. We studied the spatial distribution and the structure of the solvent in different regions: intertube, intratube and the bulk solvent. By calculating the fluctuation of coarse-grained tube-solvent surfaces, we found that tube-water interfacial fluctuation exhibits the strongest temperature dependence. By taking ions to be a solvent-like medium in the absence of water, tube-anion interfacial fluctuation shows similar but weaker dependence on temperature, while tube-cation interfacial fluctuation shows no dependence in general. These characteristics are discussed via the malleability of their corresponding solvation shells relative to the nanotube surface. Hydrogen bonding profiles and tetrahedrality of water arrangement are also computed to compare the structure of solvent in the solvent bulk and intertube region. The hydrophobic confinement induces a relatively lower concentration environment in the intertube region, therefore causing different intertube solvent structures which depend on the tube separation. This study is relevant in the continuing discourse on hydrophobic interactions (as they impact generally a broad class of phenomena in biology, biochemistry, and materials science and soft condensed matter research), and interpretations of hydrophobicity in terms of alternative but parallel signatures such as interfacial fluctuations, dewetting transitions, and enhanced fluctuation probabilities at interfaces.
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Affiliation(s)
- Shu-Ching Ou
- Department of Chemistry and Biochemistry, University of Delaware, Newark, Delaware 19716, USA
| | - Di Cui
- Department of Chemistry and Biochemistry, University of Delaware, Newark, Delaware 19716, USA
| | - Matthew Wezowicz
- Department of Computer and Information Sciences, University of Delaware, Newark, Delaware 19716, USA
| | - Michela Taufer
- Department of Computer and Information Sciences, University of Delaware, Newark, Delaware 19716, USA
| | - Sandeep Patel
- Department of Chemistry and Biochemistry, University of Delaware, Newark, Delaware 19716, USA
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Ou SC, Patel S. Electrostatic contribution from solvent in modulating single-walled carbon nanotube association. J Chem Phys 2014; 141:114906. [PMID: 25240371 PMCID: PMC4187323 DOI: 10.1063/1.4892566] [Citation(s) in RCA: 2] [Impact Index Per Article: 0.2] [Reference Citation Analysis] [Abstract] [MESH Headings] [Grants] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Received: 06/20/2014] [Accepted: 07/28/2014] [Indexed: 11/14/2022] Open
Abstract
We perform all-atom molecular dynamics simulations to compute the potential of mean force (PMF) between two (10,10) single-walled carbon nanotubes solvated in pure nonpolarizable SPC/E and polarizable TIP4P-FQ water, at various temperatures. In general, the reversible work required to bring two nanotubes from a dissociated state (free energy reference) to contact state (free energy minimum) is more favorable and less temperature-dependent in TIP4P-FQ than in SPC/E water models. In contrast, molecular properties and behavior of water such as the spatially-resolved water number density (intertube, intratube, or outer regions), for TIP4P-FQ are more sensitive to temperature than SPC/E. Decomposition of the solvent-induced PMF into different spatial regions suggests that TIP4P-FQ has stronger temperature dependence; the opposing destabilizing/stabilizing contributions from intertube water and more distal water balance each other and suppress the temperature dependence of total association free energy. Further investigation of hydrogen bonding network in intertube water reveals that TIP4P-FQ retains fewer hydrogen bonds than SPC/E, which correlates with the lower water number density in this region. This reduction of hydrogen bonds affects the intertube water dipoles. As the intertube volume decreases, TIP4P-FQ dipole moment approaches the gas phase value; the distribution of dipole magnitude also becomes narrower due to less average polarization/perturbation from other water molecules. Our results imply that the reduction of water under confinement may seem trivial, but underlying effects to structure and free energetics are non-negligible.
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Affiliation(s)
- Shu-Ching Ou
- Department of Chemistry and Biochemistry, University of Delaware, Newark, Delaware 19716, USA
| | - Sandeep Patel
- Department of Chemistry and Biochemistry, University of Delaware, Newark, Delaware 19716, USA
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Ou S, Hu Y, Patel S, Wan H. Spherical monovalent ions at aqueous liquid-vapor interfaces: interfacial stability and induced interface fluctuations. J Phys Chem B 2013; 117:11732-42. [PMID: 24032752 DOI: 10.1021/jp406001b] [Citation(s) in RCA: 16] [Impact Index Per Article: 1.5] [Reference Citation Analysis] [Abstract] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Indexed: 01/18/2023]
Abstract
Ion-specific interfacial behaviors of monovalent halides impact processes such as protein denaturation, interfacial stability, and surface tension modulation, and as such, their molecular and thermodynamic underpinnings garner much attention. We use molecular dynamics simulations of monovalent anions in water to explore effects on distant interfaces. We observe long-ranged ion-induced perturbations of the aqueous environment, as suggested by experiment and theory. Surface stable ions, characterized as such by minima in potentials of mean force computed using umbrella sampling MD simulations, induce larger interfacial fluctuations compared to nonsurface active species, conferring more entropy approaching the interface. Smaller anions and cations show no interfacial potential of mean force minima. The difference is traced to hydration shell properties of the anions, and the coupling of these shells with distant solvent. The effects correlate with the positions of the anions in the Hofmeister series (acknowledging variations in force field ability to recapitulate essential underlying physics), suggesting how differences in induced, nonlocal perturbations of interfaces may be related to different specific-ion effects in dilute biophysical and nanomaterial systems.
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Affiliation(s)
- Shuching Ou
- Department of Chemistry and Biochemistry, University of Delaware , Newark, Delaware 19716, United States
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Ou S, Patel S, Bauer BA. Free energetics of carbon nanotube association in pure and aqueous ionic solutions. J Phys Chem B 2012; 116:8154-68. [PMID: 22780909 PMCID: PMC3562760 DOI: 10.1021/jp3025717] [Citation(s) in RCA: 24] [Impact Index Per Article: 2.0] [Reference Citation Analysis] [Abstract] [Key Words] [MESH Headings] [Grants] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Indexed: 12/27/2022]
Abstract
Carbon nanotubes are a promising platform across a broad spectrum of applications ranging from separations technology, drug delivery, to bio(electronic) sensors. Proper dispersion of carbon nanotube materials is important to retaining the electronic properties of nanotubes. Experimentally it has been shown that salts can regulate the dispersing properties of CNTs in aqueous system with surfactants (Niyogi, S.; Densmore, C. G.; Doorn, S. K. J. Am. Chem. Soc.2009, 131, 1144-1153); details of the physicochemical mechanisms underlying such effects continue to be explored. We address the effects of inorganic monovalent salts (NaCl and NaI) on dispersion stability of carbon nanotubes.We perform all-atom molecular dynamics simulations using nonpolarizable interaction models to compute the potential of mean force between two (10,10) single-walled carbon nanotubes (SWNTs) in the presence of NaCl/NaI and compare to the potential of mean force between SWNTs in pure water. Addition of salts enhances stability of the contact state between two SWNT's on the order of 4 kcal/mol. The ion-specific spatial distribution of different halide anions gives rise to starkly different contributions to the free energy stability of nanotubes in the contact state. Iodide anion directly stabilizes the contact state to a much greater extent than chloride anion. The enhanced stability arises from the locally repulsive forces imposed on nanotubes by the surface-segregated iodide anion. Within the time scale of our simulations, both NaI and NaCl solutions stabilize the contact state by equivalent amounts. The marginally higher stability for contact state in salt solutions recapitulates results for small hydrophobic solutes in NaCl solutions (Athawale, M. V.; Sarupria, S.; Garde, S. J. Phys. Chem. B2008, 112, 5661-5670) as well as single-walled carbon nanotubes in NaCl and CaCl2 aqueous solutions.
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Affiliation(s)
- Shuching Ou
- Department of Chemistry and Biochemistry, University of Delaware, Newark, Delaware 19716, USA
| | - Sandeep Patel
- Department of Chemistry and Biochemistry, University of Delaware, Newark, Delaware 19716, USA
| | - Brad A. Bauer
- Department of Physical and Biological Sciences, The College of Saint Rose, Albany, New York 12203, USA
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Giovambattista N, Rossky P, Debenedetti P. Computational Studies of Pressure, Temperature, and Surface Effects on the Structure and Thermodynamics of Confined Water. Annu Rev Phys Chem 2012; 63:179-200. [DOI: 10.1146/annurev-physchem-032811-112007] [Citation(s) in RCA: 106] [Impact Index Per Article: 8.8] [Reference Citation Analysis] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Indexed: 11/09/2022]
Affiliation(s)
- N. Giovambattista
- Department of Physics, Brooklyn College of the City University of New York, Brooklyn, New York 11210;
| | - P.J. Rossky
- Institute for Computational Engineering and Sciences, Department of Chemistry and Biochemistry, University of Texas at Austin, Austin, Texas 78712;
| | - P.G. Debenedetti
- Department of Chemical and Biological Engineering, Princeton University, Princeton, New Jersey 08544-5263;
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Bauer BA, Ou S, Siva K, Patel S. Dynamics and energetics of hydrophobically confined water. PHYSICAL REVIEW. E, STATISTICAL, NONLINEAR, AND SOFT MATTER PHYSICS 2012; 85:051506. [PMID: 23004766 PMCID: PMC4214077 DOI: 10.1103/physreve.85.051506] [Citation(s) in RCA: 11] [Impact Index Per Article: 0.9] [Reference Citation Analysis] [Abstract] [Key Words] [MESH Headings] [Grants] [Track Full Text] [Subscribe] [Scholar Register] [Received: 01/02/2012] [Indexed: 06/01/2023]
Abstract
The effects of water confined in regions between self-assembling entities is relevant to numerous contexts such as macromolecular association, protein folding, protein-ligand association, and nanomaterials self-assembly. Thus assessing the impact of confined water, and the ability of current modeling techniques to capture the salient features of confined water is important and timely. We present molecular dynamics simulation results investigating the effect of confined water on qualitative features of potentials of mean force describing the free energetics of self-assembly of large planar hydrophobic plates. We consider several common explicit water models including the TIP3P, TIP4P, SPC/E, TIP4P-FQ, and SWM4-NDP, the latter two being polarizable models. Examination of the free energies for filling and unfilling the volume confined between the two plates (both in the context of average number of confined water molecules and "depth" of occupancy) suggests TIP4P-FQ water molecules generally occupy the confined volume at separation distances larger than observed for other models under the same conditions. The connection between this tendency of TIP4P-FQ water and the lack of a pronounced barrier in the potential of mean force for plate-plate association in TIP4P-FQ water is explored by artificially, but systematically, populating the confined volume with TIP4P-FQ water at low plate-plate separation distances. When the critical separation distance [denoting the crossover from an unoccupied (dry) confined interior to a filled (wet) interior] for TIP4P-FQ is reduced by 0.5 Å using this approach, a barrier is observed; we rationalize this effect based on increased resistant forces introduced by confined water molecules at these low separations. We also consider the dynamics of water molecules in the confined region between the hydrophobes. We find that the TIP4P-FQ water model exhibits nonbulklike dynamics, with enhanced lateral diffusion relative to bulk. This is consistent with the reduced intermolecular water-water interaction indicated by a decreased molecular dipole moment in the interplate region. Analysis of velocity autocorrelation functions and associated power spectra indicate that the interplate region for TIP4P-FQ at a plate separation of 14.4 Å approaches characteristics of the pure water liquid-vapor interface. This is in stark contrast to the other water models (including the polarizable SWM4-NDP model).
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Bauer BA, Patel S. Recent applications and developments of charge equilibration force fields for modeling dynamical charges in classical molecular dynamics simulations. Theor Chem Acc 2012. [DOI: 10.1007/s00214-012-1153-7] [Citation(s) in RCA: 37] [Impact Index Per Article: 3.1] [Reference Citation Analysis] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Indexed: 12/22/2022]
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Bauer BA, Ou S, Patel S. Role of spatial ionic distribution on the energetics of hydrophobic assembly and properties of the water/hydrophobe interface. Phys Chem Chem Phys 2012; 14:1892-906. [PMID: 22231014 DOI: 10.1039/c1cp20839j] [Citation(s) in RCA: 11] [Impact Index Per Article: 0.9] [Reference Citation Analysis] [Abstract] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Indexed: 12/24/2022]
Abstract
We present results from all-atom molecular dynamics simulations of large-scale hydrophobic plates solvated in NaCl and NaI salt solutions. As observed in studies of ions at the air-water interface, the density of iodide near the water-plate interface is significantly enhanced relative to chloride and in the bulk. This allows for the partial hydration of iodide while chloride remains more fully hydrated. In 1 M solutions, iodide directly pushes the hydrophobes together (contributing -2.51 kcal mol(-1)) to the PMF. Chloride, however, strengthens the water-induced contribution to the PMF by ~-2.84 kcal mol(-1). These observations are enhanced in 3 M solutions, consistent with the increased ion density in the vicinity of the hydrophobes. The different salt solutions influence changes in the critical hydrophobe separation distance and characteristic wetting/dewetting transitions. These differences are largely influenced by the ion-specific expulsion of iodide from bulk water. Results of this study are of general interest to the study of ions at interfaces and may lend insight to the mechanisms underlying the Hofmeister series.
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Affiliation(s)
- Brad A Bauer
- Department of Chemistry and Biochemistry, University of Delaware, Newark, Delaware 19716, USA
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Abstract
Potentials of mean force for single, nonpolarizable monovalent halide anions and alkali cations are computed for transversing the water-air interface (modeling using polarizable TIP4P-FQ and TIP4P-QDP). Iodide and bromide in TIP4P-FQ show interfacial stability, whereas chloride, bromide, and iodide show interfacial stability in TIP4P-QDP. A monotonic decrease in coordination number and an increasingly anisotropic distribution of solvating water molecules is shown to accompany movement of the ions towards vapor conditions; these effects are most noticeable with increases in ion size/decreases in magnitude of hydration free energy.
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Matysiak S, Debenedetti PG, Rossky PJ. Dissecting the Energetics of Hydrophobic Hydration of Polypeptides. J Phys Chem B 2011; 115:14859-65. [DOI: 10.1021/jp2079633] [Citation(s) in RCA: 34] [Impact Index Per Article: 2.6] [Reference Citation Analysis] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Indexed: 11/29/2022]
Affiliation(s)
- Silvina Matysiak
- Institute for Computational Engineering and Sciences and Department of Chemistry and Biochemistry, University of Texas at Austin, Austin, Texas, 78712 United States
- Fischell Department of Bioengineering, University of Maryland, College Park, Maryland, 20742 United States
| | - Pablo G. Debenedetti
- Department of Chemical and Biological Engineering, Princeton University, Princeton, New Jersey, 08544 United States
| | - Peter J. Rossky
- Institute for Computational Engineering and Sciences and Department of Chemistry and Biochemistry, University of Texas at Austin, Austin, Texas, 78712 United States
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